<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 20:06:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733802" ref_strand="+" ref_description="SGN-E733802 [LB10DH11]">
      <seq>cggttaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaaatgaaattgagcacctgtgtgtattgcattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8261" stop="4705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7963" g_stop="7765" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="283" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="335" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="492" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5006" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="788" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="789" polyA_stop="799"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E733802" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7963" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</genome_strand>
        <mrna_strand>CGGTTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371646" ref_strand="-" ref_description="SGN-E371646 [TUS-29-E14](-)">
      <seq>ttttctgattctgatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaaatgaaattgagcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8292" stop="4731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7992" g_stop="7765" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="312" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="364" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="521" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5028" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="795" r_length="274" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E371646" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371646" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7992" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCT</genome_strand>
        <mrna_strand>TTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371647" ref_strand="-" ref_description="SGN-E371647 [TUS-29-E14]">
      <seq>tcactttccgctttaaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaatgaaattgagcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8214" stop="4731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7914" g_stop="7765" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="234" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="286" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="443" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5028" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="716" r_length="273" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E371647" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371647" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7914" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCT</genome_strand>
        <mrna_strand>TCACTTTCCGCTTTAAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGT-AATGAAATTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280591" ref_strand="+" ref_description="SGN-E280591 [cLER-1-D23]">
      <seq>tttttttgctcaatttcatttacaacatctagcaattggacaaagctggtattgaaatcatgtattgctcaacttgttaaagattacatgtaagaacagaaggtgaaaggaatatgtgaaaactgagaaaggcagagagaggggatgaacataaatgaattttacacaattttgtgtcaatatattcaggtcaaaatgacaggtcttctagacaataaacaagttgtggcatccatgctgagtattcttccatatataatcatcgaccttgaattccctgcgatcaaggtaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="4731" stop="5620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5030" g_stop="5318" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="294" r_length="289" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E280591" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5030" e_stop="5318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCAATTTCATTTACAACATCTAGCAATTGGACAAAGCTGGTATTGAAATCATGTATTGCTCAACTTGTTAAAGATTACATGTAAGAACAGAAGGTGAAAGGAATATGTGAAAACTGAGAAAGGCAGAGAGAGGGGATGAACATAAATGAATTTTACACAATTTTGTGTCAATATATTCAGGTCAAAATGACAGGTCTTCTAGACAATAAACAAGTTGTGGCATCCATGCTGAGTATTCTTCCATATCTAATCATCGTCCTTGAATTCCCTGTCGAGAAGAAGATG</genome_strand>
        <mrna_strand>TTGCTCAATTTCATTTACAACATCTAGCAATTGGACAAAGCTGGTATTGAAATCATGTATTGCTCAACTTGTTAAAGATTACATGTAAGAACAGAAGGTGAAAGGAATATGTGAAAACTGAGAAAGGCAGAGAGAGGGGATGAACATAAATGAATTTTACACAATTTTGTGTCAATATATTCAGGTCAAAATGACAGGTCTTCTAGACAATAAACAAGTTGTGGCATCCATGCTGAGTATTCTTCCATATATAATCATCGACCTTGAATTCCCTGCGATCAAGGTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420547" ref_strand="+" ref_description="SGN-E420547 [STM-31-K18]">
      <seq>gccaaacgaacgaagctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgatggtgctggtggtttgacttgcacaacttgtttattgtctagaagtcctgtcattttgacctgaatatattaacaaaaaattctgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacacattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8269" stop="4755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7972" g_stop="7765" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="210" r_length="206" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="294" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="346" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5494" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="461" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5493" i_stop="5247" i_length="247">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5246" g_stop="5055" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="652" r_length="191" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E420547" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7972" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5494"/>
          <exon e_start="5246" e_stop="5055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCT</genome_strand>
        <mrna_strand>AACGAACGA-AGCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGATGGTGCTGGTGGTTTGACTTGCACAAC.......................................................................................................................................................................................................................................................TTGTTTATTGTCTAGAAGTCCTGTCATTTTGACCTGAATATATTAACAAAAAATTCTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACACATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCC-ATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462236" ref_strand="+" ref_description="SGN-E462236 [cPRO-11-E13]">
      <seq>aaaatccatagccaaacgaacgaagctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgatggtgctggtggtttgacttgcacaacatgtcaaggaagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgacgattagatatggaaaaatattcaccttggatgccacaacttgtttattgtctagaagtcctgtcattttgacctgaatatattaacaaaaaattctgtaaaaatcatttatgttcatcccctctctctgcctttctcagttttcacacattcctttcaccttctggtcttacatgtaatctttaaacagttgagcaatacatgattttcataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8269" stop="4774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7972" g_stop="7765" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="220" r_length="206" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="304" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="356" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="513" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5067" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="748" r_length="235" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E462236" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7972" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTT</genome_strand>
        <mrna_strand>AACGAACGA-AGCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGATGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGAAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGACGATTAGATATGGAAAAATATTCACCTTGGATGCCACAACTTGTTTATTGTCTAGAAGTCCTGTCATTTTGACCTGAATATATTAACAAAAAATTCTGTAAAAATCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACACATTCCTTTCACCTTCTGGTCTTACATGTAATCTTTAAACAGTTGAGCAATACATGATTTTCATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728582" ref_strand="+" ref_description="SGN-E728582 [LA18BB08]">
      <seq>accagttggtgtcagtttcagaatttcttgtttttctgattctgatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggttcttttctttctcaagttctctttttgtgtttttctccatgattattgtttaatttcagttgatctcatatgggttttttttattttttttttatttttggggaaattgtgatgtacttggcaggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcaaaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaaggttgagcaatacctgattttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8323" stop="4774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8023" g_stop="7555" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="521" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="678" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5301" g_stop="5079" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="902" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="905" polyA_stop="922"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E728582" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8023" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAA-GTTGAGCAATACATGATTT</genome_strand>
        <mrna_strand>ACCAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGGTTGAGCAATACCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430692" ref_strand="-" ref_description="SGN-E430692 [STM-54-I13]">
      <seq>ggggtgctcagtgttgctattggagttggaattccagttttttatgagccccaaattgataattctgcaaaaagagagaccagtcagccctgtttcccctgcactggctctggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgatggtgctggtggtttgatttgcacaacatgtcaaggaagtggcattcaacctcggtaccttgattgcagggaattcaaggacgacgattagatatggaaaaatattcaccttggatgccacaacttgtttattgtctagaagtcctgtcattttgacctgaatatattaacaaaaaattctgtaaaattcatttatgttcatcccctctctgtgccattctcagttttcacacattcctttcaccttctgttcttacatgtagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="7920" stop="4803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7620" g_stop="7555" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="118" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="275" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5301" g_stop="5103" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="474" r_length="199" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E430692" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430692" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7620" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTT</genome_strand>
        <mrna_strand>GGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGCCCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGACCAGTCAGCCCTGTTTCCCCTGCACTGGCTCTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGATGGTGCTGGTGGTTTGATTTGCACAACATGTCAAGGAAGTGGCATTCAACCTCGGTACCTTGATTGCAG......................................................................................................................................................GGAATTCAAGGACGACGATTAGATATGGAAAAATATTCACCTTGGATGCCACAACTTGTTTATTGTCTAGAAGTCCTGTCATTTTGACCTGAATATATTAACAAAAAATTCTGTAAAATTCATTTATGTTCATCCCCTCTCTGTGCCATTCTCAGTTTTCACACATTCCTTTCACCTTCTGTTCTTACATGTAGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295012" ref_strand="+" ref_description="SGN-E295012 [cLET-17-P20]">
      <seq>ttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaaatctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatgcgctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="7941" stop="4858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7778" g_stop="7765" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="98" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="150" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="307" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5158" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E295012" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7778" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCT</genome_strand>
        <mrna_strand>TTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAATCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATGCGCTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614246" ref_strand="+" ref_description="SGN-E614246 [64030]">
      <seq>gctaaacaaaagatagaaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttctttcattcagaaatttcattcaaacacatcgtaggcgaaattcttacccatgtattagagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtcttgctattggagttggaattccagttttttatgaaacccaaattgataatgctgcaaaaagagagaatacgcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagtgggtgagacagaagtctctcggtgtatcaactgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgacgattagatatggaaaaatattcaccttggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacaaaaaattctgtaaaaaaaacaaaaacagacacaaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8261" stop="4884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7961" g_stop="7765" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="282" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="334" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="491" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5185" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="608" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="619"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E614246" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7961" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCA-TCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAA</genome_strand>
        <mrna_strand>GCTAAACAAAAGATAGAAAAAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTCTTTCATTCAGAAATTTCATTCAAACACATCGTAGGCGAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTCTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAAACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAATACGCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGTGGGTGAGACAGAAGTCTCTCGGTGTATCAACTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGACGATTAGATATGGAAAAATATTCACCTTGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACAAAAAATTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288337" ref_strand="+" ref_description="SGN-E288337 [cLES-16-L18]">
      <seq>gatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8277" stop="4898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7977" g_stop="7765" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="297" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="349" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="506" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5198" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="610" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E288337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7977" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACAC</genome_strand>
        <mrna_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293664" ref_strand="+" ref_description="SGN-E293664 [cLET-21-I1]">
      <seq>gatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8280" stop="4954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7980" g_stop="7765" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="300" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="509" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5254" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="557" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E293664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7980" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466772" ref_strand="+" ref_description="SGN-E466772 [cPRO-26-C19]">
      <seq>gctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggaaggggtgagacagaagtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8261" stop="5238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7961" g_stop="7765" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="280" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5538" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="403" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E466772" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7961" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCT</genome_strand>
        <mrna_strand>GCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAAGGGGTGAGACAGAAGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466762" ref_strand="+" ref_description="SGN-E466762 [cPRO-26-A19]">
      <seq>gctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacagtggagcttggagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8261" stop="5255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7961" g_stop="7765" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="280" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5555" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="386" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E466762" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7961" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGG</genome_strand>
        <mrna_strand>GCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACAGTGGAGCTTGGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468474" ref_strand="+" ref_description="SGN-E468474 [cSTB-4-L6]">
      <seq>catttatcaactcacctcttaagcgggctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattatagctgtggatcttgatcaaaatacggttcttttctttctcaagttctctttttgtggttttcttccatgattgttgcttaatttcagttgatctcatatgggtgtttttatttcttattttttggggattgtaatgtacttggcaggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgctttccctgcactggcactggtgctcgtaagtatttcttaaactagactttccattctgttgtttctttaaatgttctatccgataagtacaaatgagcctagaggtatattgttacgtccacaagtgtacttaaaatacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8165" stop="6786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7892" g_stop="7555" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7255" g_stop="7086" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="503" r_length="170" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E468474" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7892" e_stop="7555"/>
          <exon e_start="7255" e_stop="7086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTC-TCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAA</genome_strand>
        <mrna_strand>CATTTATCAACTCACCTCTTAAGCGGGCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTATAGCTGTGGATCTTGATCAAAATACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGGTTTTCTTCCATGATTGTTGCTTAATTTCAGTTGATCTCATATGGG-TGTTTTTA--TTTCTTAT-TTTTTGGGG--ATTGTAATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTTCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTAAATGTTCTATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTACGTCCACAAGTGTACTTAAAATACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411329" ref_strand="+" ref_description="SGN-E411329 [STM-14-D5]">
      <seq>catttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcacaaatttcatcaaacacatcgtcggctaaattcttacccatgtattattagctgtggatcttgatcaaaatacggttcttttctttctcaagttctctttttgtggttttcttccatgattgttgcttaatttcacttgatctcatatgggtgttcctattttttattctttggggattgtaatgtacttggcaggtgatagcaattacaggtggggtgctcagtgttgctattggagttggaattccagttttttatgagacccacattgataattctgcaaaaagagagaacactcagccctgcttgccctgcactggcactggtgctcgtaagtatttcttaaactagactatccattctgtcgttactttaaatgttctatccgataagtacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8192" stop="6836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7892" g_stop="7555" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7255" g_stop="7136" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="454" r_length="120" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E411329" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7892" e_stop="7555"/>
          <exon e_start="7255" e_stop="7136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTA-AAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTC-TCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAA</genome_strand>
        <mrna_strand>CATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCACAAATTTCATCAAACACATCGTCGGCTAAATTCTTACCCATGTATTATTAGCTGTGGATCTTGATCAAAATACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGGTTTTCTTCCATGATTGTTGCTTAATTTCACTTGATCTCATATGGG-TGTTCCTA--TTTTTTAT-TCTTTGGGG--ATTGTAATGTACTTGGCAGGTGATAGCAATTACAGGTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCACATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTGCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTATCCATTCTGTCGTTACTTTAAATGTTCTATCCGATAAGTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296486" ref_strand="+" ref_description="SGN-E296486 [cLET-19-F16]">
      <seq>gatgatagcaaaatccatagctaatactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagctgcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8280" stop="7260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7980" g_stop="7765" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7560" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="296" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E296486" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7980" e_stop="7765"/>
          <exon e_start="7638" e_stop="7560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAA-ACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATA</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAATACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTGCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292489" ref_strand="+" ref_description="SGN-E292489 [cLET-16-B2]">
      <seq>gatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8277" stop="7467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7977" g_stop="7767" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E292489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7977" e_stop="7767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACA</genome_strand>
        <mrna_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293623" ref_strand="+" ref_description="SGN-E293623 [cLET-15-J8]">
      <seq>aaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagacaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaaattctagctcatatattgtatcatacattttacagttctaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9295" stop="8321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8995" g_stop="8614" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E293623" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8995" e_stop="8614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</genome_strand>
        <mrna_strand>AAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546290" ref_strand="+" ref_description="SGN-E546290 [TUS-69-J7](-)">
      <seq>cctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcaaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagttatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagagaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacaaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactaatgttcaatctgagtttgtgtcacaactcacaaaataatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactgtatgtattcacatttgggatgtgttacaagttctagctcatatattatatcatacattttacagttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11247" stop="8321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10947" g_stop="10911" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="159" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="230" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="345" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9042" g_stop="8618" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="774" r_length="429" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E546290" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10947" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACT-A---TCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTT</genome_strand>
        <mrna_strand>CCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCAAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGTTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGAGAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACAAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTAATGTTCAATCTGAGTTTGTGTCACAACTCACAAAATAATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTGTATGTATTCACATTTGGGATGTGTTACAAGTTCTAGCTCATATATTATATCATACATTTTACAGTTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711292" ref_strand="+" ref_description="SGN-E711292 [FB01CD06]">
      <seq>tgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9636" stop="8366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9336" g_stop="9301" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="151" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9042" g_stop="8669" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="524" r_length="373" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="543"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E711292" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9336" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</genome_strand>
        <mrna_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATC-ATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711311" ref_strand="+" ref_description="SGN-E711311 [FB01CF06]">
      <seq>tgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9636" stop="8366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9336" g_stop="9301" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="151" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9042" g_stop="8669" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="524" r_length="373" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="543"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E711311" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9336" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</genome_strand>
        <mrna_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATC-ATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733019" ref_strand="+" ref_description="SGN-E733019 [LB03DA08]">
      <seq>cttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9528" stop="8368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9228" g_stop="9119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9042" g_stop="8669" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="484" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="508"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E733019" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9228" e_stop="9119"/>
          <exon e_start="9042" e_stop="8669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</genome_strand>
        <mrna_strand>CTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728216" ref_strand="+" ref_description="SGN-E728216 [LA17AC12]">
      <seq>acactgcaatggagagcgctcttctatctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattacagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggntactggatgcaaactatatgtattcacatttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11975" stop="8378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11675" g_stop="11619" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="191" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="264" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="347" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="386" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="457" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="572" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9042" g_stop="8678" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="937" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E728216" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11675" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAAT</genome_strand>
        <mrna_strand>ACACTGCAATGGAGAGCGCTCTTCTATCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGNTACTGGATGCAAACTATATGTATTCACATTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433778" ref_strand="-" ref_description="SGN-E433778 [STM-59-A13]">
      <seq>agtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcgaaggtatgaagctcaacgaggttaaggaactcgttattgagttacaagatgtggtttgatcaattaatgtatattccctttcatgtttttacgtttctgtaaaatcacaaagataaaataatgctcattcttagtttgtgtcacaaattcatgtatttatatagcacttttacatatgaaggcgcggtaactggatgcaaactttctgtactctagctcatatattatatcatacattttacagttccatttaaaaaaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11284" stop="8329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11220" g_stop="11217" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11216" i_stop="10984" i_length="233">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="77" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="160" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="199" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="270" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="385" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9042" g_stop="8699" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="724" r_length="339" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E433778" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433778" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11220" e_stop="11217"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAG-GCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>AGTG.........................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCGAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTTA-TTGAGTTACAAGATGTGGTTTGATCAATTAATGTATATTCCCTTTCATGTTTTTACGTTTCTGTAAAATCACAAAGATAAA--ATAATGCTCATTCTTAGT-TTGTGTCACAAATTCATGTATT-TATATAGCACTTTTAC-ATATGAAGGCGCGGTAACTGGATGCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434698" ref_strand="+" ref_description="SGN-E434698 [STM-60-G12]">
      <seq>ggagcttcttctattgcaccggatctagtaacaaatcatctgttcattctgcttattatcttaatttccttgatcttgttcattcatttagcatctatcaggctggcattccttattgattcacatcgtttttcccttgcagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcgaaggtatgaagctcaacgaggttaaggaactcgttattgagttacaagatgtggtttgatcaattaatgtatattccctttcatgtttttacgtttctgtaaaatcacaaagataaaataatgctcattcttagtttgtgtcacaaattcatgtatttatatagcacttttacatatgaaggcgcggtaactggatgcaaactttctgtactctagctcatatattatatcatacattttacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9968" stop="8332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9668" g_stop="9488" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="252" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="367" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9042" g_stop="8699" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="706" r_length="339" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E434698" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9668" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAG-GCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAAATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTTGTTCATTCATTTAGCATCTATCAGGCTGGCATTCCTTATTGATTCACATCGTTTTTCCCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCGAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTTA-TTGAGTTACAAGATGTGGTTTGATCAATTAATGTATATTCCCTTTCATGTTTTTACGTTTCTGTAAAATCACAAAGATAAA--ATAATGCTCATTCTTAGT-TTGTGTCACAAATTCATGTATT-TATATAGCACTTTTAC-ATATGAAGGCGCGGTAACTGGATGCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268625" ref_strand="+" ref_description="SGN-E268625 [cLEI-13-L16]">
      <seq>cccgggctgcaggcaaaaactagcggaccaaagtattttaacatgatctccagggagaagacgaatgggagccatacaaaccatacagggcagaatttgtggcaaaggtatgaagctcaacgaggttaatgaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9296" stop="8401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8996" g_stop="8699" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="312" r_length="299" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E268625" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8996" e_stop="8699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACA-ATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>CAAAAACTAGCGGACCAAAGTATTTTAACATGATCTCCAGGGAGAAGACGAATGGGAGCCATACAAACCATACAGGGCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAATGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730550" ref_strand="+" ref_description="SGN-E730550 [LA24BH05]">
      <seq>ataatctgcaatggagagcgctcttctatctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattacagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11977" stop="8438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11677" g_stop="11619" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="266" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="349" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="388" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="574" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9042" g_stop="8738" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="879" r_length="305" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E730550" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11677" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTAT</genome_strand>
        <mrna_strand>ATAATCTGCAATGGAGAGCGCTCTTCTATCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733988" ref_strand="+" ref_description="SGN-E733988 [LB11BH12]">
      <seq>agaaactgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgatccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaggcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagacaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11977" stop="8472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11677" g_stop="11619" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="266" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="349" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="388" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="574" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9042" g_stop="8772" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="845" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E733988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11677" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATG</genome_strand>
        <mrna_strand>AGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409719" ref_strand="+" ref_description="SGN-E409719 [PPI-14-L6]">
      <seq>ggagcttcttctattgcaccggatctagtaacaaatcatctgttcattctgcttattatcttaatttccttgatcttgttcattcatttagcatctatcaggctggcattccttattgattcacatcgtttttcccttgcagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcgaaggtatgaaagctcacgaggttaaggaactcgttattgagttacaagatgtggtttgatcaattaatgtatattccctttcatgtttttacgtttctgtaaaatcacaaagataaataatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9968" stop="8486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9668" g_stop="9488" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="252" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="367" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9042" g_stop="8780" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="628" r_length="261" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E409719" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9668" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATG-AAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATC</genome_strand>
        <mrna_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAAATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTTGTTCATTCATTTAGCATCTATCAGGCTGGCATTCCTTATTGATTCACATCGTTTTTCCCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCGAAGGTATGAAAGCTC-ACGAGGTTAAGGAACTCGTTA-TTGAGTTACAAGATGTGGTTTGATCAATTAATGTATATTCCCTTTCATGTTTTTACGTTTCTGTAAAATCACAAAGATAAA-TAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325856" ref_strand="+" ref_description="SGN-E325856 [cTOC-12-H12]">
      <seq>actgttgttcctgatccagattaccgaagtgctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgcgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaggcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagacaaaccatacaatcagaatttgtggcaaaggattgaaactcaacgaggttaaagaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11256" stop="8513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10956" g_stop="10911" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="129" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="239" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="354" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9042" g_stop="8813" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="584" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E325856" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10956" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACA</genome_strand>
        <mrna_strand>ACTGTTGTTCCTGATCCAGATTACCGAAGTGCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGCGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGATTGAAACTCAACGAGGTTAAAGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585414" ref_strand="+" ref_description="SGN-E585414 [67874]">
      <seq>gctcttctctctgcttcccgcttcactactgctttgcacaaagcagaaagagaagtagttggtgggcctgtggctgtgaggaaattacagagctcattctatggcaaagagatcaatagtcatgctcttttcactagaaacttcaaaaaaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattgctcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggagagcagctcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaacagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcagcatgagctccagggagaagacgaatatgagccagacaaagcatatgatcagaatttgtggcaaagttatgaaggaagctcaaccgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11958" stop="8596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11658" g_stop="11619" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="174" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="247" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="330" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="369" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="440" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="556" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9042" g_stop="8897" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="702" r_length="146" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E585414" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11658" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAA-AGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAA</genome_strand>
        <mrna_strand>GCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTTTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTTGGTGGGCCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATCAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTGCTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGAGAGCAGCTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAACAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAGCATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAAGCATATGATCAGAATTTGTGGCAAAGTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433777" ref_strand="+" ref_description="SGN-E433777 [STM-59-A13]">
      <seq>ctgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacatagcagaaagagaagtagtaggtgggcctgtggctgtgagaaaattacagagctcattctatggcaaagagattaatagtcatgctcttttcactagaaacttcaaaagaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11972" stop="8608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11672" g_stop="11619" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="188" r_length="134" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="261" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="344" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="383" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="454" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="569" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9042" g_stop="8907" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="705" r_length="136" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E433777" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11672" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCA</genome_strand>
        <mrna_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................TAGCAGAAAGAGAAGTAGTAGGTGGGCCTGTGGCTGTGAGAAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAGAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546249" ref_strand="+" ref_description="SGN-E546249 [TUS-69-I7]">
      <seq>gcgctcttctctctgcttcccgcttcactactgctctgcacagttgagcaaaatttctgtaaaactagactttgttaagcttatcttaaaattttcttgtattgtaaactaatttttgttttgtatttatcagaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatggtcatggtcttttcactagaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcaaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagttatggtggccaaactttccgattttggtttatttttaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttacggggagcaactgtacgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11960" stop="8819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11660" g_stop="11394" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="340" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="423" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="462" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="533" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="648" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9042" g_stop="9020" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="670" r_length="22" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E546249" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11660" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="9020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGC</genome_strand>
        <mrna_strand>GCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAACTAGACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATGGTCATGGTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCAAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGTTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTTAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................-ACGGGGAGCAACTGTACGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583331" ref_strand="+" ref_description="SGN-E583331 [9152]">
      <seq>cttcactactgctttgcacaaagcagaaagagaagtagttggtgggcctgtggctgtgaggaaattacagagctcattctatggcaaagagatcaatagtcatgctcttttcactagaaacttcaaaaaaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattgctcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggagagcagctcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11839" stop="8835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11638" g_stop="11619" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="154" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="227" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="310" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="420" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9233" g_stop="9135" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="519" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E583331" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11638" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTT</genome_strand>
        <mrna_strand>CTTCACTACTGCTTTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTTGGTGGGCCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATCAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTGCTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGAGAGCAGCTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404195" ref_strand="+" ref_description="SGN-E404195 [PPC-12-P2]">
      <seq>ctgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacatagcagaaagagaagtagtaggtgggcctgtggctgtgagaaaattacagagctcattctatggcaaagagattaatagtcatgctcttttcactagaaacttcaaaagaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctggtattccagacaacaagagtgagatttgtctttgatgatgaagctctggaagtgaaagttggggaaccactccaggagtcaagtgaaaatggtttcctgggtggaaagaaccgctggaaatattcttcatttgtgaactgggaactatggtggccaaactttccgaatttggtttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11972" stop="8874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11672" g_stop="11619" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="188" r_length="134" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="261" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="344" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="383" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="454" r_length="71" r_score="0.901"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9233" g_stop="9174" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="514" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E404195" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11672" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTT</genome_strand>
        <mrna_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................TAGCAGAAAGAGAAGTAGTAGGTGGGCCTGTGGCTGTGAGAAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAGAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGGTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAAGCTCTG....................................................................................................................GAAGTGAAAGTTGGGGAACCACTCCAGGAGTCAAGTGAAAATGGTTTCCTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAACTATGGTGGCCAAACTTTCCGAATTTGGTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265774" ref_strand="+" ref_description="SGN-E265774 [cLEI-11-D24]">
      <seq>ctcactcttttcaatttcagagaagctgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgatccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagatcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcaaggagtcaggtgaaaatgttttcgtgggtggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11997" stop="9012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11697" g_stop="11619" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="213" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="286" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="369" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="408" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9371" g_stop="9312" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E265774" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11697" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTTTTCAATTTCAGAGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAG</genome_strand>
        <mrna_strand>CTCACTCTTTTCAATTTCAGAGAAGCTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGATCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCAAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295631" ref_strand="+" ref_description="SGN-E295631 [cLET-25-O3]">
      <seq>ggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgatccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11788" stop="9196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11488" g_stop="11394" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="168" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="251" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9526" g_stop="9496" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="282" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E295631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11488" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATG</genome_strand>
        <mrna_strand>GGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358628" ref_strand="+" ref_description="SGN-E358628 [cLHT-22-I19]">
      <seq>cgctcttctctctgcttcccgcttcactactgctctgcacagttgagcaaaatttctgtaaaactagactttgttaagcttatcttaaaattttcttgtattgtaaactaatttttgttttgtatttatcagaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatggtcatggtcttttcactagaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctaaggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11959" stop="9209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11659" g_stop="11394" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="339" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="422" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9526" g_stop="9509" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="440" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E358628" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11659" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTT</genome_strand>
        <mrna_strand>CGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAACTAGACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATGGTCATGGTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316601" ref_strand="+" ref_description="SGN-E316601 [cTOA-25-J20]">
      <seq>ctcttctctctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaattacagagctcattctatggcaaagagattaatagtcatactcttnttcactnaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactggttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11957" stop="10648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11657" g_stop="11619" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="174" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10983" g_stop="10948" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="211" r_length="37" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E316601" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11657" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTT-TTCACT-AAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACT-GTTGTT</genome_strand>
        <mrna_strand>CTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGG-AATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTNTTCACTNAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606036" ref_strand="+" ref_description="SGN-E606036 [21971]">
      <seq>cacccccgtatctctctctcatacacctctcttacgccgacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaattaactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtatagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttgcagtacattgcttcgcagtcaaatccacctccccccatcagcacaaaggcaaagcagtaaggtcgtcaacccacaagatcactaaaatcgcagatcatctgtttcagcaacacaagtacaggctgaagaacaagcaccccggggcttcttctgaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="14671" stop="18007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14971" g_stop="15154" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15155" i_stop="15749" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15750" g_stop="15790" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="232" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15791" i_stop="15893" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15894" g_stop="15992" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="331" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16073" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16074" g_stop="16130" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="388" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16131" i_stop="16251" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16252" g_stop="16315" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="452" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16412" g_stop="16618" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="658" r_length="206" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16619" i_stop="17588" i_length="970">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17589" g_stop="17707" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="777" r_length="119" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E606036" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14971" e_stop="15154"/>
          <exon e_start="15750" e_stop="15790"/>
          <exon e_start="15894" e_stop="15992"/>
          <exon e_start="16074" e_stop="16130"/>
          <exon e_start="16252" e_stop="16315"/>
          <exon e_start="16412" e_stop="16618"/>
          <exon e_start="17589" e_stop="17707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCCGTAAATCTCTTTCACACACCTCT-TCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT--AAAA--AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACT-AAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCC-GTGCTTCTTCTGAATCTTC</genome_strand>
        <mrna_strand>CACCCCCGTATCTCTCTCTCATACACCTCTCTTACGCCGACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATTAACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTATAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCA-TCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-CACAAAGGCAAAGCAGTA-AGGTCGTCAACCCACAAGATCACTAAAATCGCAGATCATCTGTTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGGGGCTTCTTCTGAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605705" ref_strand="+" ref_description="SGN-E605705 [21632]">
      <seq>cccgtatctctctctcatacaccctctcttacgccgaacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaattactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtatagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttgcagtacattgcttcgcagtcaaatccacctccccccactcagccacaaaggcaaagcagtagaggtcgtcaaccacagcatcactaaatcgcagatcatctgcttcagcaacacaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="14675" stop="17967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14975" g_stop="15154" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15155" i_stop="15749" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15750" g_stop="15790" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="229" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15791" i_stop="15893" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15894" g_stop="15992" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="328" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16073" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16074" g_stop="16130" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="385" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16131" i_stop="16251" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16252" g_stop="16315" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="449" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16412" g_stop="16618" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="656" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16619" i_stop="17588" i_length="970">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17589" g_stop="17667" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="734" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E605705" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14975" e_stop="15154"/>
          <exon e_start="15750" e_stop="15790"/>
          <exon e_start="15894" e_stop="15992"/>
          <exon e_start="16074" e_stop="16130"/>
          <exon e_start="16252" e_stop="16315"/>
          <exon e_start="16412" e_stop="16618"/>
          <exon e_start="17589" e_stop="17667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTAAATCTCTTTCACACA-CCTCT-TCTCGCC-AACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT-AAAAA--ACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTAC</genome_strand>
        <mrna_strand>CCCGTATCTCTCTCTCATACACCCTCTCTTACGCCGAACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATTACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTATAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAGGTCGTCAA-CCACAGCATCACTAAATCGCAGATCATCTGCTTCAGCAACACAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412379" ref_strand="+" ref_description="SGN-E412379 [STM-16-M21]">
      <seq>cccgtatctctctcacacacacctctcttccgccaacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctaaaatattaactccgtttacttgcctgctttgctctaactaactgccaattcgccggattttctagtcagtttgccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtcaaatccacctncccccactcagccacaaaggcaaagcagtagaagtcgtcaacccacagcatcactaaatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="14675" stop="17939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14975" g_stop="15154" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15155" i_stop="15749" i_length="595">
            <donor d_prob="0.841" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15750" g_stop="15790" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="228" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15791" i_stop="15893" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15894" g_stop="15992" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="327" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16073" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16074" g_stop="16130" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="384" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16131" i_stop="16251" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16252" g_stop="16315" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="448" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16412" g_stop="16618" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="655" r_length="207" r_score="0.961"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16619" i_stop="17588" i_length="970">
            <donor d_prob="0.633" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17589" g_stop="17639" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="706" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E412379" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14975" e_stop="15154"/>
          <exon e_start="15750" e_stop="15790"/>
          <exon e_start="15894" e_stop="15992"/>
          <exon e_start="16074" e_stop="16130"/>
          <exon e_start="16252" e_stop="16315"/>
          <exon e_start="16412" e_stop="16618"/>
          <exon e_start="17589" e_stop="17639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTAAATCTCTTTCACACACCTCT-TCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT-AAA-A--AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGC</genome_strand>
        <mrna_strand>CCCGTATCTCTCTCACACACACCTCTCTTCCGCCAACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTAAAATATTAACTCCGTTTACTTGCCTGCTTTGCTCTAACTAACTGCCAATTCGCCGGATTTTCTAGTCAGTTTGCCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTCAAATCCACCTNCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAAGTCGTCAACCCACAGCATCACTAAATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462696" ref_strand="+" ref_description="SGN-E462696 [cPRO-12-O2]">
      <seq>ctctctcacacacacctctcttccgccgacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaataactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="14683" stop="16618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14982" g_stop="15154" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15155" i_stop="15749" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15750" g_stop="15790" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="220" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15791" i_stop="15893" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15894" g_stop="15992" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="319" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16073" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16074" g_stop="16130" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="376" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16131" i_stop="16251" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16252" g_stop="16315" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="440" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16412" g_stop="16440" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="469" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E462696" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14982" e_stop="15154"/>
          <exon e_start="15750" e_stop="15790"/>
          <exon e_start="15894" e_stop="15992"/>
          <exon e_start="16074" e_stop="16130"/>
          <exon e_start="16252" e_stop="16315"/>
          <exon e_start="16412" e_stop="16440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTTCACACACCTCT-TCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT--AAAA-AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTT</genome_strand>
        <mrna_strand>CTCTCTCACACACACCTCTCTTCCGCCGACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATAACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443570" ref_strand="+" ref_description="SGN-E443570 [cSTA-38-N4]">
      <seq>ctcttccgccgacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaattaactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgcctttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="14697" stop="16896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14997" g_stop="15154" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15155" i_stop="15749" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15750" g_stop="15790" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="204" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15791" i_stop="15893" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15894" g_stop="15992" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="303" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15993" i_stop="16073" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16074" g_stop="16130" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="360" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16131" i_stop="16251" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16252" g_stop="16315" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="424" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16412" g_stop="16596" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="610" r_length="186" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E443570" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14997" e_stop="15154"/>
          <exon e_start="15750" e_stop="15790"/>
          <exon e_start="15894" e_stop="15992"/>
          <exon e_start="16074" e_stop="16130"/>
          <exon e_start="16252" e_stop="16315"/>
          <exon e_start="16412" e_stop="16596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT--AAAA--AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCC-TTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTC</genome_strand>
        <mrna_strand>CTCTTC-CGCCGACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATTAACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463125" ref_strand="+" ref_description="SGN-E463125 [cPRO-13-N11]">
      <seq>ctttgttcttttcaagggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtcaaatccacctccccccactcagccacaaaggcaaagcagtagaggtcgtcaacccacagcatcactaaatcgcagatcatctgcttcagcaacacaagtacaggctgaagaacaagcaccccgtgcttcttctgaatcttcaagcgaggatgaagcagattcagcagaagaggcaggatcctccaaaggtcctccaccggcttccactgcagctgcaaatgcacaaaaaacaactccctccaaatcactggtttcaactgtagctgcttctctgaacacacaaaaagcatctccatccagagcccttgctgaaatcatgaaaccttccacgtctgttgaaactcgagtggtgcagattgattctgtgccttcctcggccactgaaagtgttaaccctcctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="15937" stop="18270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16237" g_stop="16315" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16412" g_stop="16618" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="287" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16619" i_stop="17588" i_length="970">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17589" g_stop="17970" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="669" r_length="382" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E463125" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16237" e_stop="16315"/>
          <exon e_start="16412" e_stop="16618"/>
          <exon e_start="17589" e_stop="17970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTT-TTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTG</genome_strand>
        <mrna_strand>CTTTGTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGATCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCGGCTTCCACTGCAGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCATCCAGAGCCCTTGCTGAAATCATGAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTTCCTCGGCCACTGAAAGTGTTAACCCTCCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466979" ref_strand="+" ref_description="SGN-E466979 [cPRO-26-N19]">
      <seq>gttttttcaagggttccaatgtatagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttgcagtacattgcttcgcagtcaaatccacctccccccactcaggttttcattaagatgtgtttcagagtttatatgcaagcccaatcattttcagcatttctttactaaatgatagtcttagctgtttgacatttgaagatcttattcattttagagttttgcatgcttatgaatccatacagctgtgttgcgatgcaactccacaaagtccttctctaactgtccgtgctgatttgaaggttaaggagtgattattcatcagactcttaatatataacacatgcttgtgaatactagataggttgaatctttttagacttagcagtggggaagttgggggttcagtgtaggtgatagccagattacagataatgaactgttgcattttctgatggtttgctgtgtggatttgttgtgtttgtcattctaatttggattcgctaattaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="15941" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16241" g_stop="16315" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16412" g_stop="16982" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="626" r_length="551" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E466979" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16241" e_stop="16315"/>
          <exon e_start="16412" e_stop="16982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGA-ATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATT</genome_strand>
        <mrna_strand>GTTTTTTCAAGGGTTCCAATGTATAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTTTCATTAAGATGTGTTTCAGAGTTTATATGCAAGCCCAATCATTTTCAGCATTT----C-T-----TTACTAAATGATAGTCTTAGCTGTTTGACATTTGAAGATCTTATTCATTTTAGAGTTTTGCATGCTTATGAATCCATACAGCTGTGTTGCGATGCAACTCCACAAAGTCCTTCTCTAACTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATCAGACTCTTAATATATAACACATGCTTGTGAA-----------TACTAGATAGGTTGAATCTTTTTAGACTTAGCAGTGGGGAAGTTGGGGGTTCAGTGTAGGTGATAGCCAGATTACAGATAATGAACTGTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465350" ref_strand="+" ref_description="SGN-E465350 [cPRO-20-H22]">
      <seq>tttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtcaaatccacctccccccactcagccacaaaggcaaagcagtagaggtcgtcaacccacagcatcactaaatcgcagatcatctgcttcagcaacacaagtacaggctgaagaacaagcaccccgtgcttcttctgaatcttcaagcgaggatgaagcagattcagcagaagaggcaggatccctcaaaggtcctccanncggcttcactgcagctgcaaatgcacaaaaaacaactccctccaatcactggttttcactgtagctgcttctctgaacacacaaaaagcatctccatccagagcccttgctgaaatcatgaaaccttccacgtctggtgaaaactcagtggtgcagattgattctgtgcctccntcggccactgaaaagtgtaaccctcctactgagacagccttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="15990" stop="18283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16290" g_stop="16315" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16412" g_stop="16618" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="233" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16619" i_stop="17588" i_length="970">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17589" g_stop="17984" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="628" r_length="395" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E465350" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16290" e_stop="16315"/>
          <exon e_start="16412" e_stop="16618"/>
          <exon e_start="17589" e_stop="17984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCA-CCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTGAGACAGCCTTGGAG</genome_strand>
        <mrna_strand>TTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGATCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCCTCAAAGGTCCTCCANNCGGCTT-CACTGCAGCTGCAAATGCACAAAAAACAACTCCCTCC-AATCACTGGTTTTCACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCATCCAGAGCCCTTGCTGAAATCATGAAACCTTCCACGTCTGGTGAAAACTCAGTGGTGCAGATTGATTCTGTGCCTCCNTCGGCCACTGAAAAGTGTAACCCTCCTACTGAGACAGCCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350494" ref_strand="+" ref_description="SGN-E350494 [cTOS-5-I3]">
      <seq>aaagacaaggacctcaaacaacccttgatttatgtcatcaagtacttaaccccccatggtaatttgaatatgtagtttatatacatcggaaaaaggattggttcttcaatgtacatctggcatatcttagttcattcattactgttgtccatgattttttagcatggctcgaaaagtataagggtcgtcgagtgtgtaggattgccagatgcaattaccattcattattaaatatccaaattatagtacttacgtttgtgtgaaggtgggaaaatgatcatgaatctatgaagttaagagttatcttagaggatcactgtacatacatataaacatctggttcttgagatggcttggttgatgtactgaatggtaattggaatgggactgggcttctataattgtatctcttctaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="17717" stop="18736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18017" g_stop="18444" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E350494" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18017" e_stop="18444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</genome_strand>
        <mrna_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354342" ref_strand="+" ref_description="SGN-E354342 [cTOS-17-E1]">
      <seq>aaagacaaggacctcaaacaacccttgatttatgtcatcaagtacttaaccccccatggtaatttgaatatgtagtttatatacatcggaaaaaggattggttcttcaatgtacatctggcatatcttagttcattcattactgttgtccatgattttttagcatggctcgaaaagtataagggtcgtcgagtgtgtaggattgccagatgcaattaccattcattattaaatatccaaattatagtacttacgtttgtgtgaaggtgggaaaatgatcatgaatctatgaagttaagagttatcttagaggatcactgtacatacatataaacatctggttcttgagatggcttggttgatgtactgaatggtaattggaatgggactgggcttctataattgtatctcttctaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="17717" stop="18736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18017" g_stop="18444" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E354342" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18017" e_stop="18444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</genome_strand>
        <mrna_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318126" ref_strand="+" ref_description="SGN-E318126 [cTOA-29-F10]">
      <seq>tataagcttattcttagaagcacaacagggccgatagatttgtttctcttgagcaaacagggtaggcagcatgaggacataaccatcaaacatgacaagtccatggattcagtgtctgctgcaaaaaagatggatgatgcttacccatccccagcacatccttgctctttagattcaacagactcaaagctctcgggtgtccataaaatagtaccttctcataacagtatagatgatgattactggttgcgctcggaggaggcggttagcgcaactgctctgtggggcattgaataatctttaaaattgagcctggttacaaactccatatatggataccagaagatatacagaaataaggcttcttataaacatgtaaatatcttttgaagctaaaaagctttacatatctctagccagattatagtaagaaacaactggtttcagggaaactcctacaacttttgcgtacaactatatggttcacaggaatatcagtcttatgattaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="20455" stop="18859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20155" g_stop="20103" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20102" i_stop="19909" i_length="194">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19908" g_stop="19734" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="228" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19733" i_stop="19445" i_length="289">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19444" g_stop="19151" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="522" r_length="294" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E318126" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20155" e_stop="20103"/>
          <exon e_start="19908" e_stop="19734"/>
          <exon e_start="19444" e_stop="19151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAGGTATCTCCACTACATGACTAGCTTCTCTCCTTTTGTAACATATGGGTGTATGTATAGCTTGGCTGGTTCACTAATTCTCTTTGTGTAGTAGTAGTCTCCCCTAAAAAGAAAGTGATATTTTACTGTACAAGCAAAAAAAATAAAGAAAGAAACTTCAAGGCCCAATTAACTAACATAATTATCAACAAATGCAGCAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGTGTAAGTATATGACTGAACCCCTCTCTTTCCCTTTCGAATTTATTGGTATCTCTTCCTCTATTGCATAAGTTAAAATGCATGTGAATCAGTATGGTTAAACACCATCAGCCTTGTTGTTTTGAAGTGACTAAGTAATTCGAAGCAATGGGCTATCCCTTTTTTAATATTAACCGGCAAAGTAATCCAATTAATAAGCCGTCAATTCTTGTAACAATAGTTATTCTATAGTAGTGAATTCATATGAAAACACTGATTATAATCCACAACATGTTCTTCCCCTAAACTGCAGATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</genome_strand>
        <mrna_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG..................................................................................................................................................................................................CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT.................................................................................................................................................................................................................................................................................................ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745186" ref_strand="+" ref_description="SGN-E745186 [GI|47105942]">
      <seq>gatcgtttagggttctagggtttaaactaacagagaactgaagcttatagtgtaacttccttctctactgcttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgcaaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcgaggccatcaagtcgtggaaagaaaacggtttttccagcctaataattgctgctccggaactggacccatggggcattattaaagaagtgcttcctcttttatcattttcagctccttttgctgtttatcaccagtatgctcagcccctagctacgtgtatgcacaacctgcagattgagaaaatggcgattggattacaaatttctgaaccttggctacgtgaatatcaggtactcccatcaagaacccatccacatatgcagatgagcgcgtttggtggttatatactaagtggcacgaaaatatcgagcagtgactcccttaccagctctaactaggataaatttttttggcatctcactctgcttggttgtacatgtcgcttgacgataccattttcgtctttcgagaatattccctgttagaatagatgtagggattatcttgtctcttttctggggcagaaacaaggttactcatgttgtacttttattcattgattgatgtatgcttgcttttgtatgagcaattcttctaaatcaaaagactaaagggtctttttcctcttactttataaagtatttgaagattaagtggtaaattgtagaattatattgttgtctttcttggatcaagcaattgaagtctgttttgttgaagaaatataaaatatgtaatacaacattaacaattattcttcaactccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33410" stop="26781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33111" g_stop="32868" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="372" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="481" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="563" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="634" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30129" g_stop="30088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="677" r_length="43" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282">
            <donor d_prob="0.994" d_score="0.95"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29805" g_stop="29681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="802" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29680" i_stop="29378" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29377" g_stop="29284" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="896" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29283" i_stop="29130" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29129" g_stop="29063" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="963" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="29062" i_stop="28951" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28950" g_stop="28763" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1151" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28762" i_stop="28681" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="28680" g_stop="28575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1152" r_stop="1257" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="28574" i_stop="28028" i_length="547">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="28027" g_stop="27941" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1258" r_stop="1344" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="27940" i_stop="27564" i_length="377">
            <donor d_prob="0.145" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="27563" g_stop="27084" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1345" r_stop="1824" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1825" polyA_stop="1837"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E745186" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1823</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33111" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30807"/>
          <exon e_start="30129" e_stop="30088"/>
          <exon e_start="29805" e_stop="29681"/>
          <exon e_start="29377" e_stop="29284"/>
          <exon e_start="29129" e_stop="29063"/>
          <exon e_start="28950" e_stop="28763"/>
          <exon e_start="28680" e_stop="28575"/>
          <exon e_start="28027" e_stop="27941"/>
          <exon e_start="27563" e_stop="27084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTG-AAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAGGTTTGAATTTAATCTGGGTTTTATTCTTTTCTTTGACACATAATGTTTCTCCTTCTATCTCATTTCCAATATAATATTTCAGCCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAGGTATTGTTCTTAGCTTGCCAATCTTATTTAATGTTTCTTAGCCTGCCAGGCTGCTCATTCATTGTTCACACACACAGCCCTTTCTTATTCACTTATGCAATAGCCCAACTTCTGCATTCTTTATATGTCTAGAAAAATTTTCTAAGGATGAAGTTTAGATAAACATTTTTTAATAGTAAAACCTTATGTTATTGGATTTAGGCATCCTGTAGTGAGCATGTGGTAGCAAATCAATATCCTTTTTTCTGCTCTTTAATGTCCAAAGCTGAGTAAATAAGTCGAAGAACTAAAATAGATTTTCAGAAGGTCATTCTCATTTTCCATTTGAGAGATGCAAGCATTTGAGAGGAGATCCTGCAACAGGATCACGTCACTGCTTATATTTTGGCTAGATTTTTGTTAAAAGACTCTGCTTTCTCCCATAAACTGGTGTGGATGGGTAGGTGGGCGGGCTGTTGTGTCAATAATTGGAGCGCACTCTTTGTCACATCACCTTCCCTTTCTGTTGGAAAAATAAGACAAAACTAATCCTTTGTTTTCATTGCAGCCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAGGTTTGTTTTAACTAAACCGAAACGACCCCGAAAAGGGGATCTGACCACTTACATGATTACTTAACTTTATATTTATTTGCATTCTCCAGGGAGATTCTGTCAAGCAGATAATAGAAATTTAACTATAGCTCCACTTGAAGTAGTTTGACATGTGTACACTTTTTTTTTTTTTACTGACAACTTCTTTTTCTGTACTTGTGATCAGAATTTAGGATCTAAAGTCAATAGGTTTAAACTGAGTCTAATACACACACAAAAACTTGCATGTTTATTTGTGGATCGAACCAAAAACAATGTGTTCAGTTGAACCTGCCTCTAGATCTGCCTATGTTTGCTATAGCTTGTTAATTGTGCCTGAAATACTTGAAAACATGCAGGTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</genome_strand>
        <mrna_strand>GATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG..................................................................................CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209925" ref_strand="+" ref_description="SGN-E209925 [cLEC-52-F2]">
      <seq>ccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="30431" stop="28499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30129" g_stop="30088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="56" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29805" g_stop="29681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="181" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29680" i_stop="29378" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29377" g_stop="29284" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="275" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29283" i_stop="29130" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29129" g_stop="29063" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29062" i_stop="28951" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28950" g_stop="28799" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="494" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E209925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30129" e_stop="30088"/>
          <exon e_start="29805" e_stop="29681"/>
          <exon e_start="29377" e_stop="29284"/>
          <exon e_start="29129" e_stop="29063"/>
          <exon e_start="28950" e_stop="28799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</genome_strand>
        <mrna_strand>CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345277" ref_strand="+" ref_description="SGN-E345277 [cTOF-13-N17]">
      <seq>taatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtactttgtagtggacatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33334" stop="29421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33034" g_stop="32868" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="295" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="404" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="486" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="557" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30129" g_stop="30088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="599" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29805" g_stop="29721" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="685" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E345277" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33034" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30807"/>
          <exon e_start="30129" e_stop="30088"/>
          <exon e_start="29805" e_stop="29721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTAC-TTGTAGTGGACATGCTC</genome_strand>
        <mrna_strand>TAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTTGTAGTGGACATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451840" ref_strand="+" ref_description="SGN-E451840 [cSTS-14-K2]">
      <seq>cgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaaaaagatgtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagtcgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagatgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatatcgacgagatgcgaaatcagggggcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagaaaagtatagggttaagaaacagaagaaatatgcacctcgagtactaattgangcgtccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggattcactatctctactactctgcttggggaatgttactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33199" stop="29450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32899" g_stop="32868" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="160" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="269" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="351" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30129" g_stop="30088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="465" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29805" g_stop="29750" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="521" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E451840" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32899" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30807"/>
          <exon e_start="30129" e_stop="30088"/>
          <exon e_start="29805" e_stop="29750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACT-TTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAA</genome_strand>
        <mrna_strand>CGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAAAAAGATGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGTCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGATGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATCGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGGGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GAAAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTAATTGANGCGTCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATTCACTATCTCTACTACTCTGCTTGGGGAATGTTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335225" ref_strand="+" ref_description="SGN-E335225 [cTOE-1-G23]">
      <seq>ttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33340" stop="30514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33040" g_stop="32868" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="301" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="410" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="492" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30814" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="556" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E335225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33040" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTG</genome_strand>
        <mrna_strand>TTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323733" ref_strand="+" ref_description="SGN-E323733 [cTOC-2-L16]">
      <seq>cttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33341" stop="30643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33041" g_stop="32868" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="493" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30870" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="501" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E323733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33041" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTA</genome_strand>
        <mrna_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439268" ref_strand="+" ref_description="SGN-E439268 [cSTA-11-D15]">
      <seq>tgaaaaagcagttgatgaggatttgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccatttgggtctctgtttcaagtggagtcgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaatggccttgaagaaaaagatgtggatggatctaaagacaaccgtgcacttgttgataataatactgctcagagtctcactagtgaagatatcgatgagatgcgaaatcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33293" stop="30663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32993" g_stop="32868" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="363" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30963" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="430" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E439268" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32993" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAG</genome_strand>
        <mrna_strand>TGAAAAAGCAGTTGATGAGGATTTGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTTGGGTCTCTGTTTCAAGTGGAGTCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCCTTGAAGAAAAAGATGTGGATGGATCTAAAGACAACCGTGCACTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATCGATGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332403" ref_strand="+" ref_description="SGN-E332403 [cTOD-17-C10]">
      <seq>aaacttctctctctctttttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgtaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatgatccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="36259" stop="38070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36559" g_stop="36909" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37381" g_stop="37632" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="603" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37735" g_stop="37770" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="639" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E332403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36559" e_stop="36909"/>
          <exon e_start="37381" e_stop="37632"/>
          <exon e_start="37735" e_stop="37770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCC</genome_strand>
        <mrna_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332209" ref_strand="+" ref_description="SGN-E332209 [cTOD-17-C11]">
      <seq>aaacttctctctctctttttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgtaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatgatccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttacaangtcaacaatttgtgcatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="36259" stop="38069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36559" g_stop="36909" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37381" g_stop="37632" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="603" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37735" g_stop="37769" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="637" r_length="34" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E332209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36559" e_stop="36909"/>
          <exon e_start="37381" e_stop="37632"/>
          <exon e_start="37735" e_stop="37769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTC</genome_strand>
        <mrna_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTA-CAANGTCAACAATTTGTGCATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549403" ref_strand="+" ref_description="SGN-E549403 [TUS-70-B14]">
      <seq>ttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcttgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttcttcttcttctgctcctactgctggagcttattctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaactttacatcatggtccttcgtcttcaagttcgagatctcttgctagatcgaacggtagtggtagctccacgtatactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggatgatttcagccgtaacatagtagaaataatcttcaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="36277" stop="39447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36577" g_stop="36909" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37381" g_stop="37632" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="585" r_length="252" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="686" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39088" g_stop="39147" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="746" r_length="60" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E549403" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36577" e_stop="36909"/>
          <exon e_start="37381" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
          <exon e_start="39088" e_stop="39147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAA</genome_strand>
        <mrna_strand>TTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCTTGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTTCTTCTTCTGCTCCTACTGCTGGAGCTTATTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTTACATCATGGTCCTTCGTCTTCAAGTTCGAGATCTCTTGCTAGATCGAACGGTAGTGGTAGCTCCACGTATACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGATGATTTCAGCCGTAACATAGTAGAAATAATCTTCAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358035" ref_strand="+" ref_description="SGN-E358035 [cLHT-32-B11]">
      <seq>tctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcttgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttcttcttcttctgctcctactgctggagcttattctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaactttacatcatggtccttcgtcttcaagttcgagatctcttgctagatcgaacggtagtggtagctccacgtatactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="36278" stop="37916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36578" g_stop="36909" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37381" g_stop="37616" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="568" r_length="236" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E358035" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36578" e_stop="36909"/>
          <exon e_start="37381" e_stop="37616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGA</genome_strand>
        <mrna_strand>TCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCTTGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTTCTTCTTCTGCTCCTACTGCTGGAGCTTATTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTTACATCATGGTCCTTCGTCTTCAAGTTCGAGATCTCTTGCTAGATCGAACGGTAGTGGTAGCTCCACGTATACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729692" ref_strand="+" ref_description="SGN-E729692 [LA21DC05]">
      <seq>aagagaacttcttcttcatcttcttcaacaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttcttcttcttctgctgctgctcctgctccagcttattctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatggcccttcatcttcgagttcgagatctcttgccagatcgaacggtagtggtagctccgcgtatactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="36297" stop="39526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36598" g_stop="36909" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="338" r_length="315" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37381" g_stop="37632" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="590" r_length="252" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="691" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39088" g_stop="39226" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="830" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E729692" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36598" e_stop="36909"/>
          <exon e_start="37381" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
          <exon e_start="39088" e_stop="39226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCT-C--CTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACG</genome_strand>
        <mrna_strand>TTCAACAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTTCTTCTTCTGCTGCTGCTCCTGCTCCAGCTTATTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGGCCCTTCATCTTCGAGTTCGAGATCTCTTGCCAGATCGAACGGTAGTGGTAGCTCCGCGTATACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201785" ref_strand="+" ref_description="SGN-E201785 [cLEC-11-H3]">
      <seq>aaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatgatccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="36524" stop="38139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36824" g_stop="36909" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37381" g_stop="37632" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="338" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="439" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E201785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36824" e_stop="36909"/>
          <exon e_start="37381" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG</genome_strand>
        <mrna_strand>AAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540785" ref_strand="+" ref_description="SGN-E540785 [TUS-61-D20]">
      <seq>ttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtagggacgcggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagatgttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcaaggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagatgaggaagattgctctggctctggttctggttctggttctggcttgtctgctactggctctacatatacattcagtagctggacatgtagggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="37204" stop="39978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37504" g_stop="37632" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="230" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39088" g_stop="39678" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="819" r_length="589" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E540785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37504" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
          <exon e_start="39088" e_stop="39678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTT</genome_strand>
        <mrna_strand>TTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATGTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAAGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGATGAGGAAGATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTA-CATATAC-ATTCAGTAGCTGGACATGTAGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292043" ref_strand="+" ref_description="SGN-E292043 [cLET-7-N12]">
      <seq>ttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttatcaagaggaatgcaatttcgaagctatctggatgttatgagtgacatgatataatctacaggtacccttaccaaggcaacaattggctgtcagattgggagaagtttcaaaaattgagagcttaaacatataagcagtaaacatgctggtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtaaggacgcggtgaagatacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="37210" stop="39562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37510" g_stop="37632" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="202" r_length="87" r_score="0.861"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39088" g_stop="39262" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E292043" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.061" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37510" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
          <exon e_start="39088" e_stop="39262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGC</genome_strand>
        <mrna_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTT-ATCAAGAGGAATGCAATTTCG-AAGCTATCTGGATGTTATGAGTG--ACATGATA-TA-AT-CTA-CAG......................................................................................................GTACCC-TTACCAAGG-CAACAA-TTG-GC-TGT-CAGATTG-GGAGAAG--TTT-CAAAAATTGAGAGCTTA-AACAT-AT-AAGCAG-TAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAAGGACGCGGTGAAGATACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266417" ref_strand="+" ref_description="SGN-E266417 [cLEI-3-H17]">
      <seq>caggtattttttaccaaggtcaacaatttgtgcgtgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtagggacgcggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgcccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="37441" stop="39748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37630" g_stop="37632" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="104" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39088" g_stop="39448" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="465" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E266417" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37630" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
          <exon e_start="39088" e_stop="39448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGT</genome_strand>
        <mrna_strand>CAG......................................................................................................GTATTTTTTACCAAGGTCAACAATTTGTGCGTGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGCCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372294" ref_strand="+" ref_description="SGN-E372294 [TUS-30-B5](-)">
      <seq>ggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="38948" stop="39981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39248" g_stop="39681" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E372294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39248" e_stop="39681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</genome_strand>
        <mrna_strand>GGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372295" ref_strand="+" ref_description="SGN-E372295 [TUS-30-B5]">
      <seq>gtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="38949" stop="39982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39249" g_stop="39682" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E372295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39249" e_stop="39682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTC</genome_strand>
        <mrna_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282785" ref_strand="+" ref_description="SGN-E282785 [cLER-15-K15]">
      <seq>gtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcacggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="38949" stop="39981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39249" g_stop="39681" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E282785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39249" e_stop="39681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</genome_strand>
        <mrna_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCACGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540782" ref_strand="+" ref_description="SGN-E540782 [TUS-61-D20](-)">
      <seq>gaaaaacccaagatgtgcagctgatgaaaatgagctgcttagattttactgcacgagctttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccaatgctttgttgtgatatacgaagcattggaatcttaggcttaatgtttttttttttttaatttgtacatgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccaactatgatttttgtaaatatttatttattttaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="38978" stop="40245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39278" g_stop="39944" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="686"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E540782" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39278" e_stop="39944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCC-ATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTT</genome_strand>
        <mrna_strand>GAAAAACCCAAGATGTGCAGCTGATGAAAATGAGCTGCTTAGATTTTACTGCACGAGCTTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCAATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACATGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546632" ref_strand="+" ref_description="SGN-E546632 [TUS-70-B14](-)">
      <seq>acccggctgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggggtccacacaactgctagtagtgggcgggcccacgattgtcttggtagtggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgccggtagagtcaagcagaatgtgggcgcttctcccacgattgaggaggagaattgctctggttctggttctggttctggcttgtctgctactggctctaccatatacgattcagtagctggacatgtagggatttactcgaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgtttttttttttaatttctacttgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaanaagttgtaacacccgtgagataatgctgatccaactnatgatttttgtaaatatttatttattttatttatttgccctttttacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="39086" stop="40266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39386" g_stop="39966" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E546632" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39386" e_stop="39966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACT-ATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>ACCCGGCTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGGGTCCACACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGTGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCCGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGATTGAGGAGGAGAA----T-T-GCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACGATTCAGTAGCTGGACATGTAGGGATTTACTCGAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG--TTTTTTTTTTTAATTTCTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAANAAGTTGTAACACCCGTGAGATAATGCTGATCCAACTNATGATTTTTGTAAATATTTATTTATTTTATTTATTTGCCCTTTTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218112" ref_strand="+" ref_description="SGN-E218112 [cLEL-23-O7](-)">
      <seq>atgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctgattctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgttttttttttttaatttgtacttgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccacctatgatttttgtaaatacttacttattttatttatttgtcctttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="39256" stop="40266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39556" g_stop="39966" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="422"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E218112" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39556" e_stop="39966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>ATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGATTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG-TTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCACCTATGATTTTTGTAAATACTTACTTATTTTATTTATTTGTCCTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218036" ref_strand="+" ref_description="SGN-E218036 [cLEL-23-O7](-)">
      <seq>attgctctggctctggttctgattctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgttttttttttttaatttgtacttgaactgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccaactatgatttttgtaaatatttatttattttatttatttgtcccctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="39289" stop="40266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39589" g_stop="39966" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="389"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E218036" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39589" e_stop="39966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>ATTGCTCTGGCTCTGGTTCTGATTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG-TTTTTTTTTTTTAATTTGTACTTGAACTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCCCTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730175" ref_strand="+" ref_description="SGN-E730175 [LA23BC01]">
      <seq>cataaaagctgtaatgctctctgctacggtttagtttcagcactatgaaagtaacgaacagttatatagttagccaaattcttatattctttcattaaatcctcatcaatattttattgaaattcaactgtttttcatcattattttatttgaaattcaactgttcaaacaaactttttttttttagtgttaaaagttgaaatcttgaaacactctgtttcaacgtcaccatttattgtctctctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccaatccttccatgtttcacaatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcaaaaaaattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccaataatatgcgggccgggcttgccgtcaacggcggcagtgatctgaaaatgatccttagttatgtcgacactctaccaactgggaatgaaaaaggcttgttttatgcgttggaccttggtggaacaaatttccgggtgctaagggtgcagctaggtggtaaaaaagagcgtgatacccccactgagtttgagcaagtctctataccccaaaaactgatgtttgctacctccaaggaactgttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49318" stop="51259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49618" g_stop="50197" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="725" r_length="151" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51054" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="736" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E730175" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49618" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGA</genome_strand>
        <mrna_strand>CATAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTATATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCT--CATCAATATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAAC--TTTTTTTTTTT--AGTGTTAAAAGTTGAAATCTTGAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCAATCCTTCCATGTTTCACAATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAAAAAAATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCAATAATATGCGGGCCGGGCTTGCCGTCAACGGCGGCAGTGATCTGAAAATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGAACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAAAAGAGCGTGATACCCCCACTGAGTTTGAGCAAGTCTCTATACCCCAAAAACTGATGTTTGCTACCTCCAAG.....................................................................................GAACTGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257079" ref_strand="+" ref_description="SGN-E257079 [cLEG-44-L5]">
      <seq>cactctgtggtaacgtcaccatttattgtctctttttttttctccgtcacacaggggaattggggtcactgttacctaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatatctgccggccgatctactgacagcttaggagtagcaccaattttgacgaagttgcagaaagattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccgatgatatgagggccgggcttgccgtcgacggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgggtgctaagggtgcagctaggtggtaaagaagaacgtgtagtcgccactgagtttgagcaagtctctataccccaagaactgatgtttgctacctccgaggagcttttcgatttcatagcttctgcgctaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49545" stop="51379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49834" g_stop="50197" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="515" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51079" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="551" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E257079" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49834" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAA</genome_strand>
        <mrna_strand>CACTCTGTGGTAACGTCACCATTTATTGTCTCTTTTTTTTTCTCCGTCACACAGGGGAATTGGGGTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGGCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAACGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445598" ref_strand="+" ref_description="SGN-E445598 [cSTA-9-P3]">
      <seq>atttattgtccccctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctataggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagactgtgctactcctctcccagttctgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49554" stop="51135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49854" g_stop="50197" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50835" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="372" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E445598" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49854" e_stop="50197"/>
          <exon e_start="50808" e_stop="50835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTG</genome_strand>
        <mrna_strand>ATTTATTGTCCCCCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTATAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGACTGTGCTACTCCTCTCCCAGTTCTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624472" ref_strand="+" ref_description="SGN-E624472 [GI|18026820]">
      <seq>gccgctcccctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctataggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagactgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgatttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccagtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactgcaggaaaagatgttgttgcttgtttaaatgaagccatggagaggcggggaatggatatgcaagtgtctgccctggtcaatgacactgtgggaacacttgccggagcaagatactgggatgatgatgccatggttgctgtcattcttgggactggaaccaatgcttgctatgtagaacgtgtggatgctattcctaagctgacaaaaaggatgtccaagtctccaataacgattgtgaatactgaatggggagctttctcaaatggccttcctttaactgagtttgatagagaaatggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctgcaaactcaaagtatgaacatgattattaaggagaatgctaaatttcatgtctttcaaaggtttgcttgaggaaaaattacatgagcatttgtaattttcttgtaatttagaatgttctaagaaggattgatcattggacttctcattctttaagtagaggctcttgtttgtgatgccatttttgtactcccattagtgatgtacgaagaagtgaggattcatatagccaaccccaatttgtttgggaccgaggcatagttgttgttgtattatgcagcagtgacttatttatgtgataaaagcagatgtatcagtaaatatagaacatcttgtttgtttataattatgaaataagcacatttctttggtgttttagcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49563" stop="54046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49858" g_stop="50197" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="491" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51226" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="674" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51227" i_stop="51789" i_length="563">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51790" g_stop="51864" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="749" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51865" i_stop="51962" i_length="98">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51963" g_stop="52118" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="905" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52119" i_stop="52204" i_length="86">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52205" g_stop="52300" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="906" r_stop="1001" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52403" g_stop="52536" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1002" r_stop="1135" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52632" g_stop="52713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1136" r_stop="1217" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53118" g_stop="53768" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1887" r_length="670" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E624472" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>1868</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49858" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51226"/>
          <exon e_start="51790" e_stop="51864"/>
          <exon e_start="51963" e_stop="52118"/>
          <exon e_start="52205" e_stop="52300"/>
          <exon e_start="52403" e_stop="52536"/>
          <exon e_start="52632" e_stop="52713"/>
          <exon e_start="53118" e_stop="53768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTGTTAGTATTTCTTGACTCTCTTATTTGTGTAAAGGAGTGGCAGATTTTAGACATCTTACTAATTTAGCCTATGACTGATTCTGGAACCATACATCGCTAAGAAGGCCAATCAATTCTGCGTTATTTTAGTTTCAGTAAAGATGGCCAATTTCCCTCGAACTACTAAAACTTCCAACGAACGTTACGGTTTTACCTTTTTCTGAAGAAAGCACCGGAATCATCTAGTTGGTAAAATCCTGTAATTCCATCCCCAATCGATTGTGCATGTGAGATTTTCTGTTTTCTGGACAACCGAGTGTTTCATATTCGTGAGTCCATTTTTTTCAAGATACAACAAATTTGTAAGAGTACTGGTTACACTATGATAACTGATTAGTAAGTTGTGTAATTAGAGGGATCATTTCATCGCTTTGTTCTTACAAGTCGAATCGGAAAATACTGGATTCCAAACTAGTAGAGAAGATCGAGTTCCTTAACATTGACTTTTAACTTTGTCTCTCTTATCATTATCATTTTCATTTTACCTGCCGATTATTTTTTGATTCCATCATAACATGGAACAGGCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTGGTAGGTTCTTGCTCAACTTCATGTGTATTGTAGAAATGTTGGAGAATAGTCTGGCGCTTCCTTAGTTCAATCATTTCATGATTTCATTGTCAAGTTAGGTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACGGTAAGTAGAGCCCAAATCTCCTTCGTCAAGTTATTTCATGAACAGATTTTAGCAACCATTGAGTTTGATACATCATTATATTTTAGATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGT-GTTCAAAGGTTTGCTTGAGGAAAAA-TACATGAGC-------A---T-TTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGG-------A---TTT-A-TAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGATAAAAAGCACATGTATCAGTAAATATAGAACATCTTGTTTGTTTTGTAATTGTGAAATAAGCACAA</genome_strand>
        <mrna_strand>GCCGCTCCCCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTATAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGACTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCAGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAAAAGATGTTGTTGCTTGTTTAAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG..................................................................................................GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGACAAAAAGGATGTCCAAGTCTCCAATAACG......................................................................................ATTGTGAATACTGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTGCAAACTCAAAGTATGAACATGATTATTAAGGAGAATGCTAAATTTCATGTCTTTCAAAGGTTTGCTTGAGGAAAAATTACATGAGCATTTGTAATTTTCTTGTAATTTAGAATGTTCT-AAGAAGGATTGATCATTGGACTTCTCATTCTTTAAGTAGAGGCTCTTGTTTGTGATGCCA-TTTTTGTACTCCCATTAGTGATGTACGAAGAAGTGAGGATTCATATAGCCAACCCCAATTTGTTTGGGACCGAGGCATAGTTGTTGTTGTA-T-TATGCAGCAGTGACTTATTTATGTGAT-AAAAGCAGATGTATCAGTAAATATAGAACATCTTGTTTG-TTTATAATTATGAAATAAGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570239" ref_strand="+" ref_description="SGN-E570239 [14792]">
      <seq>gttgtccccctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgtcagctcgccggccgtccgatcgttccatgtttcacgatcacctcataaaacgatctataggccacgtgtcattatgtctgctgtccgatctactgatagcttaggagtagcaccaattttgactaagttgcagaaagactgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcattggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgatttcatagcttctgcactaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggcaaataggattcacgttttcttttccagtgaaacagacttcacataagaaactggaatcctaatccacatggacaaaaggttttgctgtctctggaactgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49559" stop="51527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49858" g_stop="50197" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="491" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51226" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="678" r_length="187" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E570239" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49858" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGG-AAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCA-ATAAG-AACTGGAATCCTAAT-CAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT</genome_strand>
        <mrna_strand>GTTGTCCCCCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTCAGCTCGCCGGCCGTCCGATCGTTCCATGTTTCACGATCACCTCATAAAACGATCTATAGGCCACGTGTCATTATGTCTGCTGTCCGATCTACTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGACTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCATTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGATTTCATAGCTTCTGCACTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGCAAATAGGATTCACGTTTTCTTTTCCAGTGAAACAGACTTCACATAAGAAACTGGAATCCTAATCCACATGGACAAAAGGTTTTGCTGTCTCTGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591131" ref_strand="+" ref_description="SGN-E591131 [44836]">
      <seq>acacaattgaattgatctcactgttacccaaaatgtcggtcaccgtaagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagattgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgacttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccagtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49582" stop="51527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49882" g_stop="50197" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="467" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51227" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="651" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E591131" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49882" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTG</genome_strand>
        <mrna_strand>ACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTAAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGATTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGACTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCAGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560273" ref_strand="+" ref_description="SGN-E560273 [19902]">
      <seq>cacaattgaattgatctcactgttacccaaaatgtcggtcaccgtaagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagattgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgacttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49583" stop="51448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49883" g_stop="50197" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="466" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51148" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="571" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E560273" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49883" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTT</genome_strand>
        <mrna_strand>CACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTAAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGATTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGACTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745064" ref_strand="+" ref_description="SGN-E745064 [GI|67003901]">
      <seq>ggcacgagagatctcactgttacctaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcagaaagattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccgatgatatgagggccgggcttgccgtcgacggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgggtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctataccccaagaactgatgtttgctacctccgaggagcttttcgatttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccggtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactgcgggaaaagatgttgttgcttgtctgaatgaagccatggagaggcggggaatggatatgcaagtgtctgccctggtcaatgacactgtgggaacacttgccggagcaagatactgggatgatgatgccatggttgctgtcattcttgggactggaaccaatgcttgctatgtagaacgtgtggatgctattcctaagctggcaaaaaggatgtctaagtctccaataacgattgtgaataccgaatggggagctttctcaaatggccttcctttaactgagtttgatagagaaatggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctctggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatggccaaggttgggggcttatttggtagcagctatgttccggagaagctagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaatagatcttgaagctgttgagtctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctagctggtgcaggaattgttggtatattacagaaaatggaggaagattctaaaggtctcatctttggtaaaagaacagttgtagcaatggatggaggcttatatgagcactatcctcagtacagaggatacctccaagaagctgtcacagagctactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggatctggtattggagctgcattattagctgctgcaaattcaaagtatgaacatgatgattaagggaaaagctaaatttcatgtgttcaaaggtttgcttgaggaaaaatacatgagcatttgtaatttagaatgttctaaagaaggattgatgattggatttatagaggctcttgtttgtgatgccattttttgtactcccattaatgaagtacgaagaagtgaggatttatatagccaaccccaatttatttggaatcgaggcgtagttgtaattgtattatatgcagcactgacttatttatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49595" stop="54002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49895" g_stop="50197" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="312" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="463" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51226" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="646" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51227" i_stop="51789" i_length="563">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51790" g_stop="51864" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="721" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51865" i_stop="51962" i_length="98">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51963" g_stop="52118" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="877" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52119" i_stop="52204" i_length="86">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52205" g_stop="52300" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="973" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52403" g_stop="52536" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="974" r_stop="1107" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52632" g_stop="52713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1108" r_stop="1189" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53118" g_stop="53702" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1774" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E745064" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1765</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49895" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51226"/>
          <exon e_start="51790" e_stop="51864"/>
          <exon e_start="51963" e_stop="52118"/>
          <exon e_start="52205" e_stop="52300"/>
          <exon e_start="52403" e_stop="52536"/>
          <exon e_start="52632" e_stop="52713"/>
          <exon e_start="53118" e_stop="53702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTGTTAGTATTTCTTGACTCTCTTATTTGTGTAAAGGAGTGGCAGATTTTAGACATCTTACTAATTTAGCCTATGACTGATTCTGGAACCATACATCGCTAAGAAGGCCAATCAATTCTGCGTTATTTTAGTTTCAGTAAAGATGGCCAATTTCCCTCGAACTACTAAAACTTCCAACGAACGTTACGGTTTTACCTTTTTCTGAAGAAAGCACCGGAATCATCTAGTTGGTAAAATCCTGTAATTCCATCCCCAATCGATTGTGCATGTGAGATTTTCTGTTTTCTGGACAACCGAGTGTTTCATATTCGTGAGTCCATTTTTTTCAAGATACAACAAATTTGTAAGAGTACTGGTTACACTATGATAACTGATTAGTAAGTTGTGTAATTAGAGGGATCATTTCATCGCTTTGTTCTTACAAGTCGAATCGGAAAATACTGGATTCCAAACTAGTAGAGAAGATCGAGTTCCTTAACATTGACTTTTAACTTTGTCTCTCTTATCATTATCATTTTCATTTTACCTGCCGATTATTTTTTGATTCCATCATAACATGGAACAGGCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTGGTAGGTTCTTGCTCAACTTCATGTGTATTGTAGAAATGTTGGAGAATAGTCTGGCGCTTCCTTAGTTCAATCATTTCATGATTTCATTGTCAAGTTAGGTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACGGTAAGTAGAGCCCAAATCTCCTTCGTCAAGTTATTTCATGAACAGATTTTAGCAACCATTGAGTTTGATACATCATTATATTTTAGATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</genome_strand>
        <mrna_strand>GATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG..................................................................................................GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG......................................................................................ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAGAAGCTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560817" ref_strand="+" ref_description="SGN-E560817 [20530]">
      <seq>ccggccgtccgatccttccatgtttcacgatcacctcataaaaacgatctcttaggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaaattttgactaagttgcaaaagattgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgacttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgtgttcttttccagtgaaacagactttcaataagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49635" stop="51481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49935" g_stop="50197" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="416" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51181" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="555" r_length="139" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E560817" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49935" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCAT-AAAACGATCTC-TAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACC-AATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGAC-TTCAATAAGAACT</genome_strand>
        <mrna_strand>CCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAAACGATCTCTTAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAAATTTTGACTAAGTTGCA-AAAGATTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGACTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTGTTCTTTTCCAGTGAAACAGACTTTCAATAAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429483" ref_strand="+" ref_description="SGN-E429483 [STM-52-K11]">
      <seq>ggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctgcaaactcaaagtatgaacatgattattaaggagaatgctaaatttcatgtcttcaaaggtttgcttgangaaaaattacatgagcatttgtaattttcttgtaatttagaaatgtctaagaaggattgatcattggacttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="51970" stop="53822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52270" g_stop="52300" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52403" g_stop="52536" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="165" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52632" g_stop="52713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53118" g_stop="53522" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="653" r_length="406" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E429483" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52270" e_stop="52300"/>
          <exon e_start="52403" e_stop="52536"/>
          <exon e_start="52632" e_stop="52713"/>
          <exon e_start="53118" e_stop="53522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAA-TACATGAGCATTTGTAATTT</genome_strand>
        <mrna_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTGCAAACTCAAAGTATGAACATGATTATTAAGGAGAATGCTAAATTTCATGTCTTCAAAGGTTTGCTTGANGAAAAATTACATGAGCATTTGTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457362" ref_strand="+" ref_description="SGN-E457362 [cPRO-2-B21]">
      <seq>ggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctgcaaactcaaagtatgaacatgattattaaggagaatgctaaatttcatgtcttcaaaggtttgcttgangaaaaattacatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="51970" stop="53810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52270" g_stop="52300" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52403" g_stop="52536" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="165" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52632" g_stop="52713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53118" g_stop="53510" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="641" r_length="394" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E457362" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52270" e_stop="52300"/>
          <exon e_start="52403" e_stop="52536"/>
          <exon e_start="52632" e_stop="52713"/>
          <exon e_start="53118" e_stop="53510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAA-TACATGAG</genome_strand>
        <mrna_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTGCAAACTCAAAGTATGAACATGATTATTAAGGAGAATGCTAAATTTCATGTCTTCAAAGGTTTGCTTGANGAAAAATTACATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458324" ref_strand="+" ref_description="SGN-E458324 [cPRO-5-I12]">
      <seq>ggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttccgaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="51970" stop="53727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52270" g_stop="52300" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52403" g_stop="52536" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="165" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52632" g_stop="52713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53118" g_stop="53427" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="557" r_length="310" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E458324" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52270" e_stop="52300"/>
          <exon e_start="52403" e_stop="52536"/>
          <exon e_start="52632" e_stop="52713"/>
          <exon e_start="53118" e_stop="53427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTG</genome_strand>
        <mrna_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCCGAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310662" ref_strand="+" ref_description="SGN-E310662 [cLEZ-19-H20]">
      <seq>tctctggcacctcagttgtgaccctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56661" stop="60157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56961" g_stop="57081" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="271" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="445" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="59857" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="536" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E310662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56961" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="59857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGA</genome_strand>
        <mrna_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711258" ref_strand="+" ref_description="SGN-E711258 [FB01BH02]">
      <seq>cctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56683" stop="60341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56983" g_stop="57081" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="198" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="249" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="423" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="483" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60042" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="699" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60043" i_stop="60122" i_length="80">
            <donor d_prob="0.653" d_score="0.98"/>
            <acceptor a_prob="0.614" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60123" g_stop="60130" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="707" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E711258" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56983" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60042"/>
          <exon e_start="60123" e_stop="60130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATA</genome_strand>
        <mrna_strand>CCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAA................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405367" ref_strand="+" ref_description="SGN-E405367 [PPC-18-E11]">
      <seq>gtttttacaaattaaagaatcaaagagatttctccaacttttttcaattgtttctccagctattttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcaggagtgaagatttctgtgctttgctcaagagtcgaaacaaacactttccttttccttcatcatctgcacttctcttccggctggttgtatttactgcattagacattctgtatcctgttgataccttcatgttgatgcngcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctcttatcttttcccagtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56729" stop="60397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57028" g_stop="57081" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="91" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="190" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="241" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="415" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="475" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60096" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="745" r_length="270" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E405367" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57028" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTC-TATCTATTCCCAGTTTAAATATGA</genome_strand>
        <mrna_strand>CTTTTTTCAATTGTTTCTCCAGCTATTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACAAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCGGCTGGTTGTATTTACTGCATTAGACATTCTGTATCCTGTTGATACCTTCATGTTGATGCNGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTTATCTTTTCCCAGTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462597" ref_strand="+" ref_description="SGN-E462597 [cPRO-12-M5]">
      <seq>gtttttacaaattaaagaatcaaagagatttctccaacttttttcaattgtttctccagctattttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggtccatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcangagtgaagatttctgtgctttgctcaagagtcgaaaccaacactttccttttccttcatcatctgcacttctcttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56729" stop="60241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57028" g_stop="57081" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="91" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="190" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="241" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="415" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="475" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="59941" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="589" r_length="114" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E462597" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57028" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="59941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCG</genome_strand>
        <mrna_strand>CTTTTTTCAATTGTTTCTCCAGCTATTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTCCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCANGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACCAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403149" ref_strand="+" ref_description="SGN-E403149 [PPC-9-D18]">
      <seq>cagatcttctgaacaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcangagtgaagatttctgtgctttgctcaagagtcgaaacaaacactttccttttccttcatcatctgcacttctcttccggctggttgtatttactgcattanacattctgtatcctgttgataccttcatgttgatgcggcctcatttaatacaagatttgttcattcatacattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56762" stop="60341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57062" g_stop="57081" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="118" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="169" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="343" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60042" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="618" r_length="215" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="629"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E403149" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57062" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAG</genome_strand>
        <mrna_strand>CAGATCTTCTGAACAAA-TG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCANGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACAAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCGGCTGGTTGTATTTACTGCATTANACATTCTGTATCCTGTTGATACCTTCATGTTGATGCGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308425" ref_strand="+" ref_description="SGN-E308425 [cLEY-25-F6]">
      <seq>ttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttagagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56927" stop="60341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57068" g_stop="57081" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="113" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="164" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="338" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="398" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60042" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="614" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E308425" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57068" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAG</genome_strand>
        <mrna_strand>TTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTAGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295390" ref_strand="+" ref_description="SGN-E295390 [cLET-23-D11]">
      <seq>ctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56927" stop="60300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57070" g_stop="57081" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="111" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="162" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="336" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="396" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60000" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="570" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E295390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57070" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGT</genome_strand>
        <mrna_strand>CTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374620" ref_strand="+" ref_description="SGN-E374620 [TUS-15-D11]">
      <seq>tgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaatatgaatatctttatcttttgttaactccaaaaactatattgttgttggaagtaggaaaagggttatttcaatccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaacctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56927" stop="60470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57071" g_stop="57081" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="161" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="335" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60169" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="738" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="777"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E374620" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57071" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</genome_strand>
        <mrna_strand>TGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAAAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204176" ref_strand="+" ref_description="SGN-E204176 [cLEC-13-A6]">
      <seq>tgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtgctcacaaggtaatatacagaagatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56927" stop="59096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57071" g_stop="57081" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="161" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58796" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="195" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E204176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57071" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATG</genome_strand>
        <mrna_strand>TGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGCTCACAAGGTAATATACAGAAGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251645" ref_strand="+" ref_description="SGN-E251645 [cLEG-15-M10]">
      <seq>aaaatgtgattatctgtcttgttttcgatctatagaacaccatactaagcgaatttgctacaattgtgctaaggcaaagggttctctttcgctagcctttaattttctaaaagtagtaatgtgtaactatcttatactgtgagaggatgatgtcctcttggtggagaactattttgctttccctctacactacgcctgcacattatcatgacatttcacattattggtgaagtaatatcaagatggattatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgtggtttcctaatacaggatcttggctttagaaaatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="57281" stop="58359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57581" g_stop="58060" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E251645" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57581" e_stop="58060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAG</genome_strand>
        <mrna_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTGTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACACTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGATTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTGGTTTCCTAATACAGGATCTTGGCTTTAGAAAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689068" ref_strand="+" ref_description="SGN-E689068 [t3_tus_55_P11]">
      <seq>gtaatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaaggatcaagaaagaagagccatttcccttttgcttgtgcatgattagaggatttatttagaatcatatacagactactttttatgcatcattctagcttcaatattgngtgtaatattcctgngatctgatttcttaaagaatcaaaaaatgttaacctgcaaaaggaaacaaaagaagcattgtgttttaactttgttgggtaatcctttctcatgagatgcttcgtgaagtataacatactatttaaaagtcctcgatgacataaagtacaaagcaagatatcggacagaagctcttttttcctaagtaagtgatttatccttggagctgtaagggggaaggtaaagccaaggaagagagagaaaaccagtttgaggtttgaacttgtgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="57512" stop="58787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57812" g_stop="58487" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E689068" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57812" e_stop="58487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTG-GTGTAATATTCCTG-GATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</genome_strand>
        <mrna_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGNGTGTAATATTCCTGNGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCCAAGGAAGAGAGAGAAAACCAGTTTGAGGTTTGAACTTGTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551238" ref_strand="+" ref_description="SGN-E551238 [TUS-55-P11]">
      <seq>gtaatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaaggatcaagaaagaagagccatttcccttttgcttgtgcatgattagaggatttatttagaatcatatacagactactttttatgcatcattctagcttcaatattgngtgtaatattcctgngatctgatttcttaaagaatcaaaaaatgttaacctgcaaaaggaaacaaaagaagcattgtgttttaactttgttgggtaatcctttctcatgagatgcttcgtgaagtataacatactatttaaaagtcctcgatgacataaagtacaaagcaagatatcggacagaagctcttttttcctaagtaagtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="57512" stop="58711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57812" g_stop="58411" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E551238" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57812" e_stop="58411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTG-GTGTAATATTCCTG-GATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTT</genome_strand>
        <mrna_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGNGTGTAATATTCCTGNGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265123" ref_strand="+" ref_description="SGN-E265123 [cLEI-2-E19]">
      <seq>taatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaggaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttactatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="57513" stop="58398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57813" g_stop="58098" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E265123" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57813" e_stop="58098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCA-AAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGA</genome_strand>
        <mrna_strand>TAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAGGAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTACTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308564" ref_strand="+" ref_description="SGN-E308564 [cLEY-21-I3]">
      <seq>tttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="59652" stop="60399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59952" g_stop="60096" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E308564" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>145</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59952" e_stop="60096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGA</genome_strand>
        <mrna_strand>TTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227747" ref_strand="+" ref_description="SGN-E227747 [cLEL-39-C5](-)">
      <seq>tttcaattgattatagagtaacaacttcagaaatggttgttggtttttccctagatggaaagaaactttatgtgtctgagaaggttattgacttgtagtatacacaagaagaagaatggcaatgaaaaaaattgcagctgctttaaatttctttcagcaattttcaggaaaataaagtgttcttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="61066" stop="60276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60766" g_stop="60577" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="191" polyA_stop="206"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E227747" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60766" e_stop="60577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</genome_strand>
        <mrna_strand>TTTCAATTGATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375603" ref_strand="+" ref_description="SGN-E375603 [TUS-35-C1](-)">
      <seq>cagtacaagtttggtggagtctctacctcacaaatgcgagactggcaaaatgcagggcgaccaatgcctatctttggaccttctcaagctcaattggcagcttcttcttcctcgatggaagcactttcttccaagtatgttccacccttgttgaacgagcaggagcttatgtccatttttacgtcacgaactaattcaaggatcaaaggacaatattacagtttcccttctggcttggaaggaagtggacatggactctaccccaataatgtgccttcattgcagcttctttgcaatgatcgtcgttaatacggagagccatggcaccatgtccataatatcagagcgaaactcctgcaaatcataattgatttattcttttctttgcttatgcatgagagttggtgttcattctgttactgaatataaggaacacaaaaaagggaggatatagtaaatttcatgtcccttattagatgcttattctgtttcagtttcaattaattatagagtaacaacttcagaaatggttgttggtttttccctagatggaaagaaactttatgtgtctgagaaggttattgacttgtagtatacacaagaagaagaatggcaatgaaaaaaattgcagctgctttaaatttctttcagcaattttcaggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="61560" stop="60291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61260" g_stop="60587" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E375603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61260" e_stop="60587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGT</genome_strand>
        <mrna_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTTTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATTTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703524" ref_strand="+" ref_description="SGN-E703524 [FA21DA05]">
      <seq>aaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtctaccaaccatgaaggattctcaagttccacttgagttgaggaagtcatttaagaggtgtgctgctcatgtttatataagtcggctgactaagggcttacagacttcgatgagaggtgacacagtctcctcgcatccttctcagtcctcacctcctgatggagtgaagcaagagcctcctataattcagaacagcccaactgtaaaggtgaatgatatgcatggaattgtttctactgggaatgttgcctctactgttgagaagaatccaactgaagttagaaatgcaatccttttgcaccaaagactcctccaagatcagcaacaggcttctactacatctgggttcaattctttaccaaagcagaatgcagatttcctttcattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="63769" stop="61801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63469" g_stop="63394" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="255" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="310" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62876" g_stop="62807" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="380" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62730" g_stop="62640" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="471" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62543" g_stop="62193" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="822" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62192" i_stop="62125" i_length="68">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62124" g_stop="62101" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="846" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E703524" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63469" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62807"/>
          <exon e_start="62730" e_stop="62640"/>
          <exon e_start="62543" e_stop="62193"/>
          <exon e_start="62124" e_stop="62101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAGGTGTTTTAGCACTTCGATATAGCTTTCAGTTACTCTCATGTACTTTGTTCCATTCTGAACAACTATATGGAACACTCATTTGATTTGATTATGCAGGATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAGGTTAGTTATCTTCAATAATGTGTGATATTCTTCATCCATACACGATAATAATCCTCTTTCTTTCGCAGAATGCAGATTTCCTTTCATTGTCA</genome_strand>
        <mrna_strand>AAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG................................................................................................GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTACCAAAGCAG....................................................................AATGCAGATTTCCTTTCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709386" ref_strand="+" ref_description="SGN-E709386 [FA51DA05]">
      <seq>cgttaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagacgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtctaccaaccatgaaggattctcaagttccacttgagttgaggaagccatttaagaggtgtgctgctccatgtttatataagtccggctaactaagggcttacagacttccatgagaggtgacacagtctccttcgcatccttctcagtcctcaccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="63846" stop="62104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63550" g_stop="63394" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="336" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="391" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62876" g_stop="62807" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="461" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62730" g_stop="62640" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="552" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62543" g_stop="62404" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="696" r_length="144" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E709386" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63550" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62807"/>
          <exon e_start="62730" e_stop="62640"/>
          <exon e_start="62543" e_stop="62404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAGGTGTTTTAGCACTTCGATATAGCTTTCAGTTACTCTCATGTACTTTGTTCCATTCTGAACAACTATATGGAACACTCATTTGATTTGATTATGCAGGATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCT-CATGTTTATATAAGT-CGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCC-TCGCATCCTTCTCAGTCCTCA-CCTCC</genome_strand>
        <mrna_strand>CGTTAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGACGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG................................................................................................GATTCTCAAGTTCCACTTGAGTTGAGGAAGCCATTTAAGAGGTGTGCTGCTCCATGTTTATATAAGTCCGGCTAACTAAGGGCTTACAGACTTCCATGAGAGGTGACACAGTCTCCTTCGCATCCTTCTCAGTCCTCACCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248048" ref_strand="+" ref_description="SGN-E248048 [cLEF-47-B21]">
      <seq>tttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64119" stop="62352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63819" g_stop="63735" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="293" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="472" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="527" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62876" g_stop="62807" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="597" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62730" g_stop="62652" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="676" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E248048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63819" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62807"/>
          <exon e_start="62730" e_stop="62652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</genome_strand>
        <mrna_strand>TTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378710" ref_strand="+" ref_description="SGN-E378710 [TUS-35-C1]">
      <seq>ttcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcggggcggtgtataaaggaagagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcggcagagagcgggtanaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64141" stop="62515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63841" g_stop="63735" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="315" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="494" r_length="179" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="549" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62876" g_stop="62815" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="611" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E378710" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63841" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCT</genome_strand>
        <mrna_strand>TTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCGGGGCGGTGTATAAAGGAAGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCGGCAGAGAGCGGGTANAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375604" ref_strand="+" ref_description="SGN-E375604 [TUS-35-C1]">
      <seq>gattgtactggccaagtttctggttttaatctcttataagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64279" stop="62533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63979" g_stop="63940" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63939" i_stop="63857" i_length="83">
            <donor d_prob="0.476" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63856" g_stop="63735" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="162" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="370" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="549" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="604" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62876" g_stop="62833" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="648" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E375604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63979" e_stop="63940"/>
          <exon e_start="63856" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGT</genome_strand>
        <mrna_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG...................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255230" ref_strand="+" ref_description="SGN-E255230 [cLEG-31-L7]">
      <seq>gattgtactggccaagtttctggttttaatctcttataagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64279" stop="62692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63979" g_stop="63940" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63939" i_stop="63857" i_length="83">
            <donor d_prob="0.476" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63856" g_stop="63735" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="162" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="370" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="549" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="604" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62876" g_stop="62870" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="611" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E255230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63979" e_stop="63940"/>
          <exon e_start="63856" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATT</genome_strand>
        <mrna_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG...................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255555" ref_strand="+" ref_description="SGN-E255555 [cLEG-30-L4]">
      <seq>gattgtactggccaagtttctggttttaatctcttataagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64279" stop="62692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63979" g_stop="63940" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63939" i_stop="63857" i_length="83">
            <donor d_prob="0.476" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63856" g_stop="63735" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="162" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="370" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="549" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="604" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62876" g_stop="62870" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="611" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E255555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63979" e_stop="63940"/>
          <exon e_start="63856" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATT</genome_strand>
        <mrna_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG...................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255376" ref_strand="+" ref_description="SGN-E255376 [cLEG-30-H9]">
      <seq>aagtttctggttttaatctcttattaggtgaattggttcttgtttgagttaaactttggactggcaattgatcataaattgtttgcttttggatcctttgccctttgtagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64266" stop="62850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63966" g_stop="63735" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="440" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63308" g_stop="63150" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="599" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E255376" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63966" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGC</genome_strand>
        <mrna_strand>AAGTTTCTGGTTTTAATCTCTTATTAGGTGAATTGGTTCTTGTTTGAGTTAAACTTTGGACTGGCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590191" ref_strand="+" ref_description="SGN-E590191 [43781]">
      <seq>gtcttctttcgctttttatacctttggaatcattaaaaagtacttaatctgcaatgttgggtgattgtactggccaagtttctgattttactctcttattaggtgaaatggttcttgtttgagttaaactttggacttccaattgatcataagttgttcacttggatccttttccctttgtagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcaaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgatggtccaatcaccaaagatgaagaggaagtggcagaaaccttggtatgctttggctggtatgatcccagacgttgacaccttggagcgaaagcaaaataaatagtcaacttccggaagtgaaatctttggacttaccggaacctgaggcttctgtaattgcaagtggagttgtaacaacagagcaggacataaggacaaacaggtcccaattcagtgctgaagctttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64340" stop="62947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64040" g_stop="63735" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="515" r_length="210" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63308" g_stop="63247" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="577" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E590191" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64040" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAAT-TTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTT-GTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTT-GAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAG</genome_strand>
        <mrna_strand>GTCTTCTTTCGCTTTTTATACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATGTTGGGTGATTGTACTGGCCAAGTTTCTGATTTTACTCTCTTATTAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAGTTG-TT-CACTTGGATCCTTTTCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCAAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATGGTCCAATCACCAAAGATGAAGAGGAAGTGGCAGAAACCTTGGTATGCTTTGGCTGGTATGATCCCAGACGTTGACACCTTGGAGCGAAAGCAAAATAAATAGTCAACTTCCGGAAGTGAAATCTTTGGACTTACCGGAACCTGAGGCTTCTGTAATTGCAAGTGGAG.....................................................................................TTGTAACAACAGAGCAGGACATAAGGACAAACAGGTCCCAATTCAGTGCTGAAGCTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554340" ref_strand="+" ref_description="SGN-E554340 [cTSC-3-P5]">
      <seq>aaacagagtaactgatcgttttcgtgtgaaatcttgagagaatcgggtaatcaaaaaccgaaagcttcggtttttccgtttgttaagcagaaatattctcagatagctaaatcgttactatttggattgtaagggaggaaatgaaataattgcgaagaaatcgaagaaagggggagaaagattgagtggtgctggtgaagtttagtccagtatgaacaacattgaaatgggttgtttaaagtctgatgataacgatgagattcattccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggatgagcttgattgtccaatcacccaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccatatgttgacaccttgagcgaaagcaaaataaatagtccaactttcctgaagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="66007" stop="63141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65707" g_stop="65583" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65582" i_stop="64555" i_length="1028">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64554" g_stop="64373" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64292" g_stop="64235" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63856" g_stop="63735" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="487" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63601" g_stop="63441" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="650" r_length="163" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E554340" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65707" e_stop="65583"/>
          <exon e_start="64554" e_stop="64373"/>
          <exon e_start="64292" e_stop="64235"/>
          <exon e_start="63856" e_stop="63735"/>
          <exon e_start="63601" e_stop="63441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGGGTAAATCAAAAATTTATTCTTTTTGTTTGTTTGTTTGTTCTTGTTCAGTTATGAGTTGTTGCAACAGATTGTAAGCTGGATTAATTTTTTTTTTCATGATTCTCTGTTGTTTGTTCATGGAAATGACTGAGTTTTTTGTTTTCTGCATTTTGAATTTTTGCGTTTTCGATCTGAAAGAGTGATGAGATTATGCTTTTTCTGAAGAAAATGTACGTTTGATCTATATAATCTGATATGTTGATCTGTTTTAATGGGGTTTTGTTGATGAATAGAGATGGTACTGTAATTTCTCTACATGGGGTTGATTTTTTTTAGGTACTTTGCGTGTGTGTTGTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTTTGGGGGTTGATGAGTACGAGTGTGACAGACTCACAGTGAGAGAGCGGCTTTATTATGTGAAGAAGAACCCGATTCGTTGTACATAAAGGACCAAATTCAGTTTTCTTCTTCTTCTTCCCTTTTTAACCATTTTTAGAGTTTTTAAATGTTAGTACTGTAAAACCCAAAAGCCTTTAATGTTTCTGTATCGGGTTTTTAGATTCACTACCAAAAGTTCTGAATTTTGGAGGTTCTTGTTTGATGATTAGAGAATTGATTGTAGCTGGGTCTGGAAAAAAAATTGTTTTCAATTCAATTTTGTTGCAGTATTTTTTTTCCAGAAATGGACAAGAATCGGTAATGCTTAAGTGTGAAAGTGAATTTTATTGTTTCGTCTTTGTATTAAAATCAAACGGTTACTAGACAACAAGACCCATCAATGCGTCTATTGTCTGTTTCTGCAAATATATTCTTATTCTTATTCATCTATATGTGGATTTTGGTGTTTGCGAGGTTGAGAAACGCGTGTCGTCTTGTATTCCTCCTTTTCTCCTCTCTTTTTTTCTTTTTTGGTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGT-CAAC-TTCCTGAAGTGAA</genome_strand>
        <mrna_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGATGAGCTTGATTGTCCAATCACCCAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCATATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCCAACTTTCCTGAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458541" ref_strand="+" ref_description="SGN-E458541 [cPRO-6-G7]">
      <seq>gttatctgttacagttctttatccttctttttgttttgattttacttgtgatttctgtttttcacacaaaattctctgataatatttctgggttttgctttggatgcttagattgtaagggaggaaatgaaataattgcgaagaaagtggaagaggggaaatttagtggtgttggtgaagtctaatccagtatgaacaacattgaaatgggttgttcaaggtctgatgataacgatgagattcatcccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagctatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgactcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgatggtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="64965" stop="63205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64665" g_stop="64373" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64292" g_stop="64235" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="345" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63856" g_stop="63735" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="467" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63601" g_stop="63505" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="564" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E458541" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64665" e_stop="64373"/>
          <exon e_start="64292" e_stop="64235"/>
          <exon e_start="63856" e_stop="63735"/>
          <exon e_start="63601" e_stop="63505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTG</genome_strand>
        <mrna_strand>GTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTACTTGTGATTTCTGTTTTTCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGGATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAA--G-TGGAAGAGGG-G-AA-ATTTAGTGGTGTTGGTGAAGTCTAATCCAGTATGAACAACATTGAAATGGGTTGTTCAAGGTCTGATGATAACGATGAGATTCATCCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................CTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGACTCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATGGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336634" ref_strand="+" ref_description="SGN-E336634 [cTOE-4-J5]">
      <seq>tacatttctcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgcccggcactctagctgaattcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68562" stop="70078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68862" g_stop="69037" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69778" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="474" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E336634" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68862" e_stop="69037"/>
          <exon e_start="69481" e_stop="69778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACT</genome_strand>
        <mrna_strand>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCCGGCACTCTAGCTGAATTCACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390694" ref_strand="+" ref_description="SGN-E390694 [TUS-46-J14]">
      <seq>atttctcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68565" stop="70129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68865" g_stop="69037" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69829" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="522" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E390694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68865" e_stop="69037"/>
          <exon e_start="69481" e_stop="69829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTA</genome_strand>
        <mrna_strand>ATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323393" ref_strand="+" ref_description="SGN-E323393 [cTOC-10-O23]">
      <seq>atttctcctttttccatttttaagaagaacgagaanaggtagaatgctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68565" stop="70063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68865" g_stop="69037" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69763" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="456" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E323393" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68865" e_stop="69037"/>
          <exon e_start="69481" e_stop="69763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCT</genome_strand>
        <mrna_strand>ATTTCTCCTTTTTCCATTTTTAAGAAGAACGAGAANAGGTAGAATGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304013" ref_strand="+" ref_description="SGN-E304013 [cLEX-6-E5]">
      <seq>tttctcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68566" stop="70143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68866" g_stop="69037" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69843" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="535" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E304013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68866" e_stop="69037"/>
          <exon e_start="69481" e_stop="69843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGC</genome_strand>
        <mrna_strand>TTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317412" ref_strand="+" ref_description="SGN-E317412 [cTOA-28-D21]">
      <seq>tcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagctgaaagtaatgagcctgggaagcgaaaacgtcgcgggtaagagcgcgtgtgaagcttttcgaaaagatgagtattgttgcgccggagcgtttataaatccgacacttgtaaaccatcatcgtattcaacgttgnttaaaaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68570" stop="70419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68870" g_stop="69037" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="70119" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="806" r_length="638" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E317412" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68870" e_stop="69037"/>
          <exon e_start="69481" e_stop="70119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCT</genome_strand>
        <mrna_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAAGCGAAAACGTCGCGGGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTATAAATCCGAC-ACTTGTAAACCATCATCGTATTCAACGTTGNTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321815" ref_strand="+" ref_description="SGN-E321815 [cTOB-25-B12]">
      <seq>tcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaagtggttctggtacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68570" stop="70177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68870" g_stop="69037" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69877" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="564" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E321815" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68870" e_stop="69037"/>
          <exon e_start="69481" e_stop="69877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTG</genome_strand>
        <mrna_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAAGTGGTTCTGGT-ACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338317" ref_strand="+" ref_description="SGN-E338317 [cTOE-13-L5]">
      <seq>tcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68570" stop="69963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68870" g_stop="69037" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69663" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="351" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E338317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68870" e_stop="69037"/>
          <exon e_start="69481" e_stop="69663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATT</genome_strand>
        <mrna_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726477" ref_strand="+" ref_description="SGN-E726477 [LA11DF12]">
      <seq>cctttttccatttttaagtggaagaagaaggaggagaaggctagggattttgattcacaagctctcttttgcatcattaatattcattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctcttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaataagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggcggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagttgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcctgtgaagcttttcgaaaagatgagtattgttgcgccggtgcgttcaataatccgacgacttgtaaaccatcatcatattcaacgttgtttaagaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacattttgtccttcacctaataccagtcaaaaatcgtcatcatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68571" stop="70499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68871" g_stop="69037" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="70177" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="868" r_length="697" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E726477" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68871" e_stop="69037"/>
          <exon e_start="69481" e_stop="70177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATT-A-A-T-ATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG</genome_strand>
        <mrna_strand>CCTTTTTCCATTTTTAAGTGGAAGAAGAAGGAGGAGAAGGCTAGGGATTTTGATTCACAAGCTCTCTTTTGCATCATTAATATTCATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTCTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATAAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGCGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGTTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCCTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGTGCGTTCAATAATCCGACGACTTGTAAACCATCATCATATTCAACGTTGTTTAAGAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272543" ref_strand="+" ref_description="SGN-E272543 [cLEM-21-E8]">
      <seq>cctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68571" stop="70145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68871" g_stop="69037" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69845" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="532" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E272543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68871" e_stop="69037"/>
          <exon e_start="69481" e_stop="69845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTT</genome_strand>
        <mrna_strand>CCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205659" ref_strand="+" ref_description="SGN-E205659 [cLEC-21-N16]">
      <seq>ctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68572" stop="70121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68872" g_stop="69037" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69821" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="507" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E205659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68872" e_stop="69037"/>
          <exon e_start="69481" e_stop="69821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTC</genome_strand>
        <mrna_strand>CTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244441" ref_strand="+" ref_description="SGN-E244441 [cLEF-3-G8]">
      <seq>ctttttccatttttaagaggaagaacaacaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagagaaactgctctgtctatatgctctgttcttaactattacacagctgctcatagcacgtgtaaattcagctgcaacatttacaatggtgaataaatgtcaccaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccgccgattgcggctccggtaagctcgaatgcgccggtggcaaccctgcaccgccagcaactctagctgaattcacactctacggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68572" stop="70086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68872" g_stop="69037" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69786" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="472" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E244441" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68872" e_stop="69037"/>
          <exon e_start="69481" e_stop="69786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGAT</genome_strand>
        <mrna_strand>CTTTTTCCATTTTTAAGAGGAAGAACAACAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGAGAAACTGCTCTGTCTATATGCTCTGTTCTTAACTATTACACAGCTGCTCATAGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCACCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGCCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACCCTGCACCGCCAGCAACTCTAGCTGAATTCACACTCTACGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201801" ref_strand="+" ref_description="SGN-E201801 [cLEC-11-N1]">
      <seq>tttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68573" stop="70206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68873" g_stop="69037" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69906" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="591" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E201801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68873" e_stop="69037"/>
          <exon e_start="69481" e_stop="69906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGA</genome_strand>
        <mrna_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212869" ref_strand="+" ref_description="SGN-E212869 [cLEC-73-D5]">
      <seq>tttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68573" stop="70147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68873" g_stop="69037" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="69847" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="532" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E212869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68873" e_stop="69037"/>
          <exon e_start="69481" e_stop="69847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGT</genome_strand>
        <mrna_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559278" ref_strand="+" ref_description="SGN-E559278 [18750]">
      <seq>ttcaagaggaggaagaagaagaaggagaggactagggattttgattcacaagctctcttttgcatcattaattcattgatattcccactttcttcttcaatggcgcaattgaaagttctctgtctctttgctctgtttttaacaattacagagctcttcataacaggtgtaaattcagctgcaacatttacaatggtgaataaatgccagcaaacaatttggcctggattattatctaacgccggaattgctccactttccaccactggttttgttctacaaaaaggcgaatcgaaaacaatcagtgtacccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggttccggtaagctcgaatgcgccggcggcaacgctctaccgccggcaactctagctgaattcacactagatggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttgccaatgcttgtggtaccacaaggtggttccggtaacaactgtacaagtaccggatgcgtggttgatttgaacggcgcgtgtccgtcggagctgacagtgatgaggcgttggaggtgaaaatgtcgcgtgtaagagcgcgtgtgaagcttttcgaaaagatgagtattgttgcgccggcgcgtataataatccaacgacgtgttaaaccatcgtcatatccacgttgttaagaaggttgtcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68586" stop="70382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68944" g_stop="69037" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="166" r_length="94" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="70082" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="766" r_length="600" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E559278" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68944" e_stop="69037"/>
          <exon e_start="69481" e_stop="70082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGA-GCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTG-TAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGT</genome_strand>
        <mrna_strand>TCATTGATATTCCCACTTTCTTCTTCAATGGCGCAATTGAAAGTTCTCTGTCTCTTTGCTCTGTTTTTAACAATTACAGAGCTCTTCATAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGCCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATTGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGGCGAATCGAAAACAATCAGTGTACCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGTTCCGGTAAGCTCGAATGCGCCGGCGGCAACGCTCTACCGCCGGCAACTCTAGCTGAATTCACACTAGATGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTGCCAATGCTTGTGGTACCACAAGGTGGTTCCGGTAACAACTGTACAAGTACCGGATGCGTGGTTGATTTGAACGGCGCGTGTCCGTCGGAGCTGACAGTGATGAGGCGTTGGAGGTGAAAATGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGCGCGTATAATAATCCAACGACGTGTTAAACCATCGTCATA-TCCACGTTG-TT-AAGAAGGTTGT-CGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600162" ref_strand="+" ref_description="SGN-E600162 [53166]">
      <seq>gagaagactagggattttgattcacaagctctcttttgcatcattaattcattaatattcccaccttcttcttcaatggcgcaagtgaaagtgctctgtttctttgctctgtttttaactattacagagctcttcataacaggtgtaaattcagctgcaacatttacaatggtgaataaatgcaagcaaacaatttggcctggattattatctaacgccggaattgctccactttccaccactggttttgttctacaaaaaggcgaatcgaaaacaatcagtgtacccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggttccggtaagctcgaatgcgccggcggcaacgctctaccgccggcaactctagctgaattcacactagatggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttgccaatgcttgtggtaccacaaggtggttccggtaacaattgtacaagtaccggatgtgaggtggatttgaacggcgcgtgtccatcggagctgaaagtgatgagcatgggaggtgaaaatgtcgcgtgtaagagcgcgtgtgaagcttttcgaaacgatgagtattgttgcgccggcgcgtataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68604" stop="70324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68944" g_stop="69037" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="142" r_length="94" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="70024" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="686" r_length="544" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E600162" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68944" e_stop="69037"/>
          <exon e_start="69481" e_stop="70024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAA</genome_strand>
        <mrna_strand>TCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAAGTGCTCTGTTTCTTTGCTCTGTTTTTAACTATTACAGAGCTCTTCATAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGCAAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATTGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGGCGAATCGAAAACAATCAGTGTACCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGTTCCGGTAAGCTCGAATGCGCCGGCGGCAACGCTCTACCGCCGGCAACTCTAGCTGAATTCACACTAGATGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTGCCAATGCTTGTGGTACCACAAGGTGGTTCCGGTAACAATTGTACAAGTACCGGATGTGAGGTGGATTTGAACGGCGCGTGTCCATCGGAGCTGAAAGTGATGAGCATGGGAGGTGAAAATGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAACGATGAGTATTGTTGCGCCGGCGCGTATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702053" ref_strand="+" ref_description="SGN-E702053 [FA17CF12]">
      <seq>cgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagctgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcgtgtgaagcttttcgaaaagatgagtattgttgcgccggagcgtttaataatccgacaacttgtaaaccatcatcgtattcaacgttgtttaaaaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacattttgtccttcacctaataccagtcaaaagtcgtcatcatcatcaagtggacaaaatcaaaaaccagaagatagtaacaatcaaaacgacaacgataataacaacgagccatcaacgatcaacaactctatggtatatgatggtgcatgggatatcaatagtgcatcttcaaccaccacgtgcatgcacgtgttcagttcaccggccatagccggtgccgtcgccttcttaacagcctctttccagntgcatcgtcagctctactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="69254" stop="71396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69554" g_stop="70177" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70852" g_stop="71096" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="869" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E702053" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69554" e_stop="70177"/>
          <exon e_start="70852" e_stop="71096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAGGTAAACTTACTTATTCATCTTCTCTAATTTTTTTCCTCACAAATTCATACCAACAAACAATTTAATCAAATTTAGATAGTTAACTACGTGAGCTCGTTATATTTTTTTTTTAATTTACAAAATTAACTTGGGATGGGTGGGGGGACACATTGGGATTGAGTTGGGAATGTGGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAAT</genome_strand>
        <mrna_strand>CGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGNTGCATCGTCAGCTCTACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266383" ref_strand="+" ref_description="SGN-E266383 [cLEI-3-E16]">
      <seq>cggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagctgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcgtgtgaagcttttcgaaaagatgagtattgttgcgccggagcgtttaataatccgacaacttgtaaaccatcatcgtattcaacgttgtttaaaaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="69257" stop="70458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69557" g_stop="70158" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E266383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69557" e_stop="70158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTT</genome_strand>
        <mrna_strand>CGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730609" ref_strand="+" ref_description="SGN-E730609 [LA24CF03]">
      <seq>gcaataaataagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggcggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttctacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagttgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcctgtgaagcttttcgaaaagatgagtattgttgcgccggtgcgttcaataatccgacgacttgtaaaccatcatcatattcaacgttgtttaagaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacattttgtccttcacctaataccagtcaaaaatcgtcatcatcatcaagcggacaaaatcaaaaaccagaagatagtaacaaccaaaacgacaacgataataacaacgagccatcaacgatcaacaactctatggtatatgatggtgcatgggatatcagtagtgcatcttcaaccaccacgtgcatgcacgtgttcagttcaccggccatagccggtgccgtcgccttcttaacagccactttccagttgcatcgtcagctctactaattttttatttttgactttttgttgacactcaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="69309" stop="71437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69608" g_stop="70177" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70852" g_stop="71137" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="856" r_length="286" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E730609" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69608" e_stop="70177"/>
          <exon e_start="70852" e_stop="71137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAGGTAAACTTACTTATTCATCTTCTCTAATTTTTTTCCTCACAAATTCATACCAACAAACAATTTAATCAAATTTAGATAGTTAACTACGTGAGCTCGTTATATTTTTTTTTTAATTTACAAAATTAACTTGGGATGGGTGGGGGGACACATTGGGATTGAGTTGGGAATGTGGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAAT</genome_strand>
        <mrna_strand>GCAATAAATAAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGCGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCTACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGTTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCCTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGTGCGTTCAATAATCCGACGACTTGTAAACCATCATCATATTCAACGTTGTTTAAGAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAATCGTCATCATCATCAAGCGGACAAAATCAAAAACCAGAAGATAGTAACAACCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAGTAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCACTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCAAAAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204088" ref_strand="+" ref_description="SGN-E204088 [cLEC-27-M13]">
      <seq>cttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagctgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcgtgtgaagcttttcgaaaagatgagtattgttgcgccggagcgtttaataatccgacaacttgtaaaccatcatcgtattcaacgttgtttaaaaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacattttgtccttcacctaataccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="69328" stop="70477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69628" g_stop="70177" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E204088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69628" e_stop="70177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG</genome_strand>
        <mrna_strand>CTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731099" ref_strand="+" ref_description="SGN-E731099 [LA26AE09]">
      <seq>ggggaccgataccgaattcgcactatatggagccaaaataacaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggcggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagttgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcctgtgaagcttttcgaaaagatgagtattgttgcgccggtgcgttcaataatccgacgacttgtaaaccatcatcatattcaacgttgtttaagaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacattttgtccttcacctaataccagtcaaaaatcgtcatcatcatcaagcggacaaaatcaaaaaccagaagatagtaacaaccaaaacgacaacgataataacaacgagccatcaacgatcaacaactctatgtatatgatggtgcatgggatatcagtagtgcatcttcaaccaccacgtgcatgcacgtgttcagttcaccggccatagccggtgccgtcgccttcttaacagccactttccagttgcatcgtcagctctactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="69358" stop="71395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69636" g_stop="70177" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70852" g_stop="71095" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="785" r_length="243" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E731099" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69636" e_stop="70177"/>
          <exon e_start="70852" e_stop="71095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAGGTAAACTTACTTATTCATCTTCTCTAATTTTTTTCCTCACAAATTCATACCAACAAACAATTTAATCAAATTTAGATAGTTAACTACGTGAGCTCGTTATATTTTTTTTTTAATTTACAAAATTAACTTGGGATGGGTGGGGGGACACATTGGGATTGAGTTGGGAATGTGGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAA</genome_strand>
        <mrna_strand>GGGGACCGATACCGAATTCGCACTATATGGAGCCAAAATAACACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGCGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGTTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCCTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGTGCGTTCAATAATCCGACGACTTGTAAACCATCATCATATTCAACGTTGTTTAAGAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAATCGTCATCATCATCAAGCGGACAAAATCAAAAACCAGAAGATAGTAACAACCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTAT-GTATATGATGGTGCATGGGATATCAGTAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCACTTTCCAGTTGCATCGTCAGCTCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258253" ref_strand="+" ref_description="SGN-E258253 [cLEG-49-A21]">
      <seq>ggaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagctgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcgtgtgaagcttttcgaaaagatgagtattgttgcgccggagcgtttaataatccgacaacttgtaaaccatcatcgtattcaacgttgtttaaaaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacattttgtccttcacctaataccagtcaaaagtcgtcatcatcatcaagtggacaaaatcaaaaaccagaagatagtaacaatcaaaacgacaacgataataacaacgagccatcaacgatcaacaactctatggtatatgatggtgcatgggatatcaatagtgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="69382" stop="71295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69682" g_stop="70177" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70852" g_stop="70995" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="640" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E258253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69682" e_stop="70177"/>
          <exon e_start="70852" e_stop="70995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAGGTAAACTTACTTATTCATCTTCTCTAATTTTTTTCCTCACAAATTCATACCAACAAACAATTTAATCAAATTTAGATAGTTAACTACGTGAGCTCGTTATATTTTTTTTTTAATTTACAAAATTAACTTGGGATGGGTGGGGGGACACATTGGGATTGAGTTGGGAATGTGGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATC</genome_strand>
        <mrna_strand>GGAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279956" ref_strand="+" ref_description="SGN-E279956 [cLER-8-H17]">
      <seq>cttatcacattttgtccttcacctaataccagtcaaaagtcgtcatcatcatcaagtggacaaaatcaaaaaccagaagatagtaacaatcaaaacgacaacgataataacaacgagccatcaacgatcaacaactctatggtatatgatggtgcatgggatatcaatagtgcatcttcaaccaccacgtgcatgcacgtgttcagttcaccggccatagccggtgccgtcgccttcttaacagcctctttccagttgcatcgtcagctctactaattttttatttttgactttttgttgacactcgaaaaaaaaaattaggcgaaaaggccggcctgacccggcccatgttattttgtcggaatttggggtgttgtatcacgtgtggaccattaaattgggccttgtgacccacatgtgtggcccatgtgacggggaaatgagtcagcttacgtgtcaatttaattgacgtacaccgaattaccttttaattggtgaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="69846" stop="71623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70146" g_stop="70177" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70852" g_stop="71323" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="504" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E279956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70146" e_stop="70177"/>
          <exon e_start="70852" e_stop="71323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCACATTTTGTCCTTCACCTAATACCAGGTAAACTTACTTATTCATCTTCTCTAATTTTTTTCCTCACAAATTCATACCAACAAACAATTTAATCAAATTTAGATAGTTAACTACGTGAGCTCGTTATATTTTTTTTTTAATTTACAAAATTAACTTGGGATGGGTGGGGGGACACATTGGGATTGAGTTGGGAATGTGGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAG</genome_strand>
        <mrna_strand>CTTATCACATTTTGTCCTTCACCTAATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212936" ref_strand="+" ref_description="SGN-E212936 [cLEC-73-N10]">
      <seq>ggcctgtcaaatggaacgttaggacgttattttcaatttaaagaaaaaatatctgacatcatattattcgtaggggtatgtgggctataaggaaattagtaggggtattttagtactttacatagtatgtgagatcatttttataggagaatgggttccacgtatagtgaattagtactttataacataatatatgaggtcattgtaataggggtatgtggttatatataggggtattttagtacttgtgctaactaagtcagctttgggaattgggaaaaatatcaaacttaacggcttaaagagattctctgacccaagactatgaattgtcctttttatccaagtagccatagcccaccaattggtctagttctgcgtgaattcgtcaaatttattccaatcaaatggttattaaaatatattttatttttataaaataagaattgatcgacattaataaggatttatatagctgattcaataatacaatttccattgcagtcaaaagtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="70048" stop="71162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70348" g_stop="70862" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E212936" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70348" e_stop="70862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGT</genome_strand>
        <mrna_strand>GGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTAGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCCAATCAAATGGTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620540" ref_strand="+" ref_description="SGN-E620540 [71242]">
      <seq>caaaatcaagaaccagaagatagtaacaatcaaaacaacgacaacaataacaatgagccatcaacgatcaacaactctatggtatatgatggtgcatgggatatcagtagtgcatcttcaaccaccacgtgcatgcacgtgttcagatcaccggccatagccggtgccgtcgccttcttaacagccactttccagtggcatcgtcagctcttctaactttttatttttgacgttttgttgacacccaaaaaaaaaaattaggcgaaaagggcggcccaacccggcccatgttattttgtcggaatttggggtgttgtatcacgtgtggaccattaaattgggccttgtgactcacatgtgtggcccatgtgacggggaaatgagtcagcttacgtgtcaatttaattgacgtacacctattttaccttttaattggtgaaaaaagaggtacctctatagccacaaaatttagattttttaggttatttaattttttatttgactttttttagtgttatatttttaatttgaattaagattgggattaggtttaggagagggagattcatttgttaggtaggttttagaaaaattatgtataatatgctttatatttgtaaccattccagttggtggaaattatatacacttaaaaaaatggattggtgatttatttcttaaaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="70580" stop="71877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70880" g_stop="71574" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="691"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E620540" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70880" e_stop="71574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGA-ATTACCTTTTAATTGGTGAAAAAAGAGGT--CTCCATAGCCACAAAATTTAGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAGAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGTGATTTATTTCTT</genome_strand>
        <mrna_strand>CAAAATCAAGAACCAGAAGATAGTAACAATCAAAACAACGACAACAATAACAATGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAGTAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGATCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCACTTTCCAGTGGCATCGTCAGCTCTTCTAACTTTTTATTTTTGACGTTTTGTTGACACCCAAAAAAAAAAATTAGGCGAAAAGGGCGGCCCAACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACTCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCTATTTTACCTTTTAATTGGTGAAAAAAGAGGTACCTCTATAGCCACAAAATTTAGA-TTTTTTAGGTTATTT-A------A--TT-TTTTATTTGAC-TTTTTTTAGTGTTATATTTTTAATTTGAATTAAGATTGGGATTAGG-TTTAGGAGAGGGAGATTCATTTGTTAGGTAGG--TT--TTAGAAAAATTATGTATAATATGC-TTTATATTTGTAACCATTCC-AGTTGGTGGAAATTATATACACTTAAAAAAATGGATTGGTGATTTATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390943" ref_strand="+" ref_description="SGN-E390943 [TUS-46-J14](-)">
      <seq>tttttaacagcctttttccagttgcatcgtcagcttttataattttttatttttgactttttgttgacccttgaaaaaaaaaattaggggaaaaggccggcctgacccggcccatgttattttgtcggaatttggggggttgtatcacgtgtggaccattaaattgggccttgtgacccccatgtgtggcccatgtgacggggaaatgagtcagcttacgtgtcaatttaattgacgtaccccgaattaccttttaattggtgaaaaaagaggtttccatagccccaaaattttgagttttggaggttatttaattttttattttattttatttgacttttttttagttttatattttaaattttaattaagattgggattaggtttttggggggggggattcatttggtaggtaggttttagttagaaaaattatgtataatatgcttttatgtttgtaaccattccaagttggtggaaattatataaacttaaaaaaatggattggggatttattttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="70754" stop="71877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71054" g_stop="71574" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="557"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E390943" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71054" e_stop="71574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAGAGGTCTCCATAGCCACAAAATTTAGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAGAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGTGATTTATTTCTT</genome_strand>
        <mrna_strand>TTTTTAACAGCCTTTTTCCAGTTGCATCGTCAGCTTTTATAATTTTTTATTTTTGACTTTTTGTTGACCCTTGAAAAAAAAAATTAGGGGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGGGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCCCATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACCCCGAATTACCTTTTAATTGGTGAAAAAAGAGGTTTCCATAGCCCCAAAATTTTGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTTGGGGGGGGGGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGGGATTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304151" ref_strand="+" ref_description="SGN-E304151 [cLEX-6-E5](-)">
      <seq>tttttatttttgactttttgttgacactcgaaaaaaaaaattaggcgaaaaggccggcctgacccggcccatgttattttgtcggaatttggggtgttgtatcacgtgtggaccattaaattgggccttgtgacccacatgtgtggcccatgtgacggggaaatgagtcagcttacgtgtcaatttaattgacgtacaccgaattaccttttaattggtgaaaaaaaaggtttccatagccccaaaatttagagttttggagggtatttaattttttattttattttatttgacttttttttagttttaaattttaaattttaattaagattgggattaggttttaggaaagggagattcatttggtaggtaggttttagttagaaaaattatgtataatatgcttttatgtttgtaaccattccaagttggtggaaattatataaacttaaaaaaatggattggtgatttattttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="70797" stop="71877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71097" g_stop="71574" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="513"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E304151" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71097" e_stop="71574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAGAGGTCTCCATAGCCACAAAATTTAGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAGAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGTGATTTATTTCTT</genome_strand>
        <mrna_strand>TTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAAAGGTTTCCATAGCCCCAAAATTTAGAGTTTTGGAGGGTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTAAATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAAAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGTGATTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431806" ref_strand="+" ref_description="SGN-E431806 [STM-56-E11]">
      <seq>gcgagacgacgggttgtgcgaaggatttgaaccgaatgtgcccaaatgagttacgggtcggggacgggcaagcatgtaaaagtgcatgtgaagcatttggtacccctgaatattgttgcagcggcgcgtacgcttcaccttccacctgtaagccatctagctactcagcaatgtttaaaaacgcgtgcccaaaatcgtatagctacgcatatgatgatcctacgagtacttttacgtgtaccggagctgattatacgataacattctgtccttcattaacaagtcaaaaatcatcgagagactcttcgccgttgaacggcaacggaaaaggattttctatcggaaatggcgggtccgggtcggattctagtccggcggaggatccatttccatttggcaattcatggttaccggattttatgacgggggactcatcacgaacaaaattttcttattttgacataaaaattgcatttttaatcttttcttttcttcactttttattaatattttaatttttccaatttaatttctacattttgatggtgacttgagatattcacatttgaagaagatcaaagaaaaaaaaaaaggctgatgatttttttcttcttcttgtaaagcacatttttttaggtttcatatgtatagagatttaatttgcaatttctcaaagtagtacttattatttcagtgttcatatttgcttttgtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="87512" stop="90016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87812" g_stop="88094" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88095" i_stop="89283" i_length="1189">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89284" g_stop="89716" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="717" r_length="434" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E431806" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87812" e_stop="88094"/>
          <exon e_start="89284" e_stop="89716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATACGACGGGTTGTGTGAAGGATTTGAACCGAATGTGCCCGAATGAGTTACGGGTCGGGGACGGGCAAGCATGCAAAAGTGCATGTGAAGCATTTGGTACGCCGGAATATTGTTGCAGCGGCGCGTACGGTTCACCTTCCACCTGTAAGCCGTCAAGTTACTCGGCGATGTTTAAAAACGCGTGCCCAAAATCGTATAGCTACGCATACGATGATCCTACGAGTACATTTACGTGTACAGGAGCTGATTATACGATAACATTCTGTCCTTCATTAACAAGGTAAAAATATTAATAAATTAAAAATATCCTTTTTATCGTAATATTATTATTCAGATTTTTATTCTGCGACTTTATTACAATTTTTTATAATTTTTTTTTATCATCGTCGCTGTCCGTTGATTTATTCATAAAGTAATAAAAGTATGTAATAATGACGTGTTATTCTGAATCAAAATTGCTTTTTTTTTTTTTAATTGGAAACACTTTTTTTTTCCTAACTAGCTTTTAGCTCATTGTAGCACAAGGCTGAGTAGATATTACTGTACTACTTTAGAGCATATTTCAAGTTGTACCTTTTGATCTTCGTCTTGATGAAGTGTAAAATAATATTATCTTTTTATTATGTTGAAAAGACAATTTAAATTATAATTAGTGTCAGGTATTTTATTGACTACGACGTTATCTGCTAGTCAAGTTACACAAATTCATTCAAAAAATTTAAAGTTAATTAGTTTATTGAGTGTTCGGTCAAAAATATTTATAAATTTCTGACAAATATTCATATGTTATATATTTTTTGAGGTGGACAACTATTTAAGATGAGTGATTAGTGACATTCGAGGTTGTTAGATTAGTTGTTACTTTTTAATTAAGAAAATTAATAGAATATTAGTGAGAGTATTAAAGAATATAAGAGTAAGTATTAGTTGGCAATTTCTAATATATAGAATCTTTTAGTGGCTTCATTTTGTTATCTTATCTTGAACATTTTGTCTTCTTTTTTTTCCAACCTTTTTCTTCCGTAGAACAAATGAAATAGTATAGCTTCTTTTGATTATTTTTTCCCCCTCAAATGTCCATTTACACTTTATCCTTTTAACTGGATAAACTTGTTAGTGTTACATCACATCAAACGACTGGAAAGCTTTTTTATACAAGTTTTCGATGTCATATATGTATTAACTATCAAACAGTAATCTATCGAAAACAATTTTTTTATCCTCATAAGTTACGTGGTAGGTGAAATGCTGAGTGCACTCCATCTTGTATACAGATTTACTTGTAAAATTACATCAACTATGTTATTATTGTTTAAATATAAAAATGTCAAATTAATGTATTATTGCATGTTAACAACGTGAGTTTCATGCAATAAATTTGGACAATATGAATTATTATTATTTATTATAGATGACATTCTTTTAAAGTAAGATTTAAACCTCATACGACTTTATATATTTGATTGCAGTCAAAAATCTTCGAGAGATTCTTCGCCATTGAACGGCAACGGAAAGGGATTTTCGATCGGAAATGGCGGATCCGGGTCGGGTACCAGTCCAGCGGAGGATCCATTTCCATTTGGCAGTTCATGGTTACCAGATTTTATGACAGGGGACTCATCACAAACAAAATTTTCTAATTTTCACTTAAAAATTGCATTATTTATCTTTTTATTTCTTCACCTTTTATTAATATTTTAATTTTTTCCGATTTAATTTCTATA-TTTCATGGTGACTTTGAGATATTCACATTTGAAGGAGATC-AAG-AAAAAAAAAAGGCTGATGATTTTTTT-TTCTTCATGTAAAGCACATTTTTATAGGTTTCACATGTATAGAGATTTTAATTTGCAATTTTTTGAAGTAGTAAATATTATTTCAGTGTTCACATTTGCTTTTGTACTA</genome_strand>
        <mrna_strand>GCGAGACGACGGGTTGTGCGAAGGATTTGAACCGAATGTGCCCAAATGAGTTACGGGTCGGGGACGGGCAAGCATGTAAAAGTGCATGTGAAGCATTTGGTACCCCTGAATATTGTTGCAGCGGCGCGTACGCTTCACCTTCCACCTGTAAGCCATCTAGCTACTCAGCAATGTTTAAAAACGCGTGCCCAAAATCGTATAGCTACGCATATGATGATCCTACGAGTACTTTTACGTGTACCGGAGCTGATTATACGATAACATTCTGTCCTTCATTAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAATCATCGAGAGACTCTTCGCCGTTGAACGGCAACGGAAAAGGATTTTCTATCGGAAATGGCGGGTCCGGGTCGGATTCTAGTCCGGCGGAGGATCCATTTCCATTTGGCAATTCATGGTTACCGGATTTTATGACGGGGGACTCATCACGAACAAAATTTTCTTATTTTGACATAAAAATTGCATTTTTAATCTTTTCTTTTCTTCACTTTTTATTAATATTTTAA-TTTTTCCAATTTAATTTCTACATTTTGATGGTGAC-TTGAGATATTCACATTTGAAGAAGATCAAAGAAAAAAAAAAAGGCTGATGATTTTTTTCTTCTTCTTGTAAAGCACATTTTTTTAGGTTTCATATGTATAGAGA-TTTAATTTGCAATTTCTCAAAGTAGTACTTATTATTTCAGTGTTCATATTTGCTTTTGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465094" ref_strand="+" ref_description="SGN-E465094 [cPRO-20-G1]">
      <seq>gcgagacgacgggttgtgcgaaggatttgaaccgaatgtgcccaaatgagttacgggtcggggacgggcaagcatgtaaaagtgcatgtgaagcatttggtacccctgaatattgttgcagcggcgcgtacgcttcaccttccacctgtaagccatctagctactcagcaatgtttaaaaacgcgtgcccaaaatcgtatagctacgcatatgatgatcctacgagtacttttacgtgtaccggagctgattatacgataacattctgtccttcattaacaagtcaaaaatcatcgagagactcttcgccgttgaacggcaacggaaaaggattttctatcggaaatggcgggtccgggtcggattctagtccggcggaggatccatttccatttggcaattcatggttaccggattttatgacgggggactcatcacgaacaaaattttcttattttgacataaaaattgcatttttaatcttttcttttcttcactttttattaatattttaatttttccaatttaatttctacattttgatggtgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="87512" stop="89841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87812" g_stop="88094" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88095" i_stop="89283" i_length="1189">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89284" g_stop="89553" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="553" r_length="270" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-E465094" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87812" e_stop="88094"/>
          <exon e_start="89284" e_stop="89553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATACGACGGGTTGTGTGAAGGATTTGAACCGAATGTGCCCGAATGAGTTACGGGTCGGGGACGGGCAAGCATGCAAAAGTGCATGTGAAGCATTTGGTACGCCGGAATATTGTTGCAGCGGCGCGTACGGTTCACCTTCCACCTGTAAGCCGTCAAGTTACTCGGCGATGTTTAAAAACGCGTGCCCAAAATCGTATAGCTACGCATACGATGATCCTACGAGTACATTTACGTGTACAGGAGCTGATTATACGATAACATTCTGTCCTTCATTAACAAGGTAAAAATATTAATAAATTAAAAATATCCTTTTTATCGTAATATTATTATTCAGATTTTTATTCTGCGACTTTATTACAATTTTTTATAATTTTTTTTTATCATCGTCGCTGTCCGTTGATTTATTCATAAAGTAATAAAAGTATGTAATAATGACGTGTTATTCTGAATCAAAATTGCTTTTTTTTTTTTTAATTGGAAACACTTTTTTTTTCCTAACTAGCTTTTAGCTCATTGTAGCACAAGGCTGAGTAGATATTACTGTACTACTTTAGAGCATATTTCAAGTTGTACCTTTTGATCTTCGTCTTGATGAAGTGTAAAATAATATTATCTTTTTATTATGTTGAAAAGACAATTTAAATTATAATTAGTGTCAGGTATTTTATTGACTACGACGTTATCTGCTAGTCAAGTTACACAAATTCATTCAAAAAATTTAAAGTTAATTAGTTTATTGAGTGTTCGGTCAAAAATATTTATAAATTTCTGACAAATATTCATATGTTATATATTTTTTGAGGTGGACAACTATTTAAGATGAGTGATTAGTGACATTCGAGGTTGTTAGATTAGTTGTTACTTTTTAATTAAGAAAATTAATAGAATATTAGTGAGAGTATTAAAGAATATAAGAGTAAGTATTAGTTGGCAATTTCTAATATATAGAATCTTTTAGTGGCTTCATTTTGTTATCTTATCTTGAACATTTTGTCTTCTTTTTTTTCCAACCTTTTTCTTCCGTAGAACAAATGAAATAGTATAGCTTCTTTTGATTATTTTTTCCCCCTCAAATGTCCATTTACACTTTATCCTTTTAACTGGATAAACTTGTTAGTGTTACATCACATCAAACGACTGGAAAGCTTTTTTATACAAGTTTTCGATGTCATATATGTATTAACTATCAAACAGTAATCTATCGAAAACAATTTTTTTATCCTCATAAGTTACGTGGTAGGTGAAATGCTGAGTGCACTCCATCTTGTATACAGATTTACTTGTAAAATTACATCAACTATGTTATTATTGTTTAAATATAAAAATGTCAAATTAATGTATTATTGCATGTTAACAACGTGAGTTTCATGCAATAAATTTGGACAATATGAATTATTATTATTTATTATAGATGACATTCTTTTAAAGTAAGATTTAAACCTCATACGACTTTATATATTTGATTGCAGTCAAAAATCTTCGAGAGATTCTTCGCCATTGAACGGCAACGGAAAGGGATTTTCGATCGGAAATGGCGGATCCGGGTCGGGTACCAGTCCAGCGGAGGATCCATTTCCATTTGGCAGTTCATGGTTACCAGATTTTATGACAGGGGACTCATCACAAACAAAATTTTCTAATTTTCACTTAAAAATTGCATTATTTATCTTTTTATTTCTTCACCTTTTATTAATATTTTAATTTTTTCCGATTTAATTTCTATA-TTTCATGGTGACTTT</genome_strand>
        <mrna_strand>GCGAGACGACGGGTTGTGCGAAGGATTTGAACCGAATGTGCCCAAATGAGTTACGGGTCGGGGACGGGCAAGCATGTAAAAGTGCATGTGAAGCATTTGGTACCCCTGAATATTGTTGCAGCGGCGCGTACGCTTCACCTTCCACCTGTAAGCCATCTAGCTACTCAGCAATGTTTAAAAACGCGTGCCCAAAATCGTATAGCTACGCATATGATGATCCTACGAGTACTTTTACGTGTACCGGAGCTGATTATACGATAACATTCTGTCCTTCATTAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAATCATCGAGAGACTCTTCGCCGTTGAACGGCAACGGAAAAGGATTTTCTATCGGAAATGGCGGGTCCGGGTCGGATTCTAGTCCGGCGGAGGATCCATTTCCATTTGGCAATTCATGGTTACCGGATTTTATGACGGGGGACTCATCACGAACAAAATTTTCTTATTTTGACATAAAAATTGCATTTTTAATCTTTTCTTTTCTTCACTTTTTATTAATATTTTAA-TTTTTCCAATTTAATTTCTACATTTTGATGGTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221096" ref_strand="+" ref_description="SGN-E221096 [cLEL-22-B5](-)">
      <seq>actcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattatcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttgcaattgtttttctttctaaattttactggaaaaataagtagtgcttgagcatgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92300" stop="91374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92000" g_stop="91651" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E221096" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92000" e_stop="91651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATGATTTGATAGTGTCAAATCAAAAAA</genome_strand>
        <mrna_strand>ACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTATCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATGAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336859" ref_strand="+" ref_description="SGN-E336859 [cTOE-5-O19]">
      <seq>tttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttgcaattgtttttctttctaaattttactggaaaaataagtagtgcttgagcatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92196" stop="91374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91896" g_stop="91659" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E336859" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91896" e_stop="91659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATGATTTGATAGTGTCAAA</genome_strand>
        <mrna_strand>TTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713471" ref_strand="+" ref_description="SGN-E713471 [FB08CH09]">
      <seq>aacagacccagaggacgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttacaattgtttttctttctaaattttactgaaaaataagtagtgcttgagcatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92528" stop="91374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92322" g_stop="92310" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91675" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="562" r_length="549" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="581"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E713471" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92322" e_stop="92310"/>
          <exon e_start="92224" e_stop="91675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATG</genome_strand>
        <mrna_strand>AACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTACAATTGTTTTTCTTTCTAAATTTTACT-GAAAAATAAGTAGTGCTTGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220739" ref_strand="+" ref_description="SGN-E220739 [cLEL-22-B5](-)">
      <seq>gaagaacctaagactgaaaccaagccagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttgcaattgtttttctttctaaattttactggaaaaataagtagtgcttgagcatgaaaaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92356" stop="91374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92056" g_stop="91675" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="406"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E220739" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92056" e_stop="91675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATG</genome_strand>
        <mrna_strand>GAAGAACCTAAGACTGAAACCAAGCCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283732" ref_strand="+" ref_description="SGN-E283732 [cLES-1-G9](-)">
      <seq>acatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92695" stop="91425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92395" g_stop="92310" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91718" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="593" r_length="507" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E283732" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92395" e_stop="92310"/>
          <exon e_start="92224" e_stop="91718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTT</genome_strand>
        <mrna_strand>ACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713394" ref_strand="+" ref_description="SGN-E713394 [FB08CA10]">
      <seq>gtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92859" stop="91429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92559" g_stop="92310" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91727" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="748" r_length="498" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E713394" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92559" e_stop="92310"/>
          <exon e_start="92224" e_stop="91727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGC</genome_strand>
        <mrna_strand>GTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737146" ref_strand="+" ref_description="SGN-E737146 [LC08CF01]">
      <seq>cgcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaaacaatctggaaggtcttgttttttcctaattggaaactggtaaagctctagtttttctaaggaaatcaacttttgacgtgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92966" stop="91425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92668" g_stop="92310" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91729" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="855" r_length="496" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="871"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E737146" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92668" e_stop="92310"/>
          <exon e_start="92224" e_stop="91729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGG-AACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTT</genome_strand>
        <mrna_strand>CGCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAAACAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAAACTGGT-AAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736088" ref_strand="+" ref_description="SGN-E736088 [LC04BB12]">
      <seq>tagtaacagacccagaggacgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92626" stop="91425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92326" g_stop="92310" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91729" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="513" r_length="496" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="563"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E736088" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92326" e_stop="92310"/>
          <exon e_start="92224" e_stop="91729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTT</genome_strand>
        <mrna_strand>TAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418884" ref_strand="-" ref_description="SGN-E418884 [STM-28-D23]">
      <seq>tagtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagattgaaaccaaggcagaagaggaatctgcatccgaagagtctgaactcaaggatgagctatagataatttcctaagatatgttcttttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttattgtatgagtttgtcggtccgtgtaacaaatctggaaggtcttgtttttcctaattggaactggtaaaagctctagttttctaaggaaaccaacttttaacgtattaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92782" stop="91425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92482" g_stop="92310" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91732" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="661" r_length="488" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="675"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E418884" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418884" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92482" e_stop="92310"/>
          <exon e_start="92224" e_stop="91732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGT</genome_strand>
        <mrna_strand>TAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAGGAATCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAATTTCCTAAGATATGTTCTTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTATTGTATGAGTTTGTCGGTCCGTGTAACAAATCTGGAAGGTCTTG-TTTTTCCTAATTGGAACTGGTAAAAGCTCTAG-TTTTCTAAGGAAACCAACTTTTAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413365" ref_strand="-" ref_description="SGN-E413365 [STM-17-D22]">
      <seq>gaaaataatgcattcacaaaccctgtcagatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcaggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagatgaagctgaagaacctgagattgaaaccaaggcagaagaggagtctgcatccgaagagtctgaactcaaggatgagctatagataatgtccttaagatatgttcctttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttagtgtatgagtttgtcggtccgtataacaaatctggaaggtcttgtttttcctaattggaactggtaaaagctctagttttctaagagaaacaacttttaacgtaaaccctttttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92742" stop="91432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92442" g_stop="92310" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91732" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="622" r_length="489" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E413365" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92442" e_stop="92310"/>
          <exon e_start="92224" e_stop="91732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCC-TAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGT</genome_strand>
        <mrna_strand>GAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCAGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAGGAGTCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAATGTCCTTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTAGTGTATGAGTTTGTCGGTCCGTATAACAAATCTGGAAGGTCTTG-TTTTTCCTAATTGGAACTGGTAAAAGCTCTAG-TTTTCTAAGAGAAACAACTTTTAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402591" ref_strand="+" ref_description="SGN-E402591 [PPC-8-K21]">
      <seq>caacagttgaggaagaagaagatgaagctgaagaacctgagattgaaaccaaggcagaagaggagtctgcatccgaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttagtgtttgagtttgtcggtccgtgtaacaattctggaaggtcttgtttttcctaattggaactggtaaaagctctagttttctaagaaaaccaacttttaacgtattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92385" stop="91425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92085" g_stop="91732" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="362"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E402591" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92085" e_stop="91732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGT</genome_strand>
        <mrna_strand>CAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAGGAGTCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTAGTGTTTGAGTTTGTCGGTCCGTGTAACAATTCTGGAAGGTCTTG-TTTTTCCTAATTGGAACTGGTAAAAGCTCTAG-TTTTCTAAGAAAACCAACTTTTAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595896" ref_strand="+" ref_description="SGN-E595896 [39178]">
      <seq>ctgagattgaaaccaaggcagaagaggagtctgcatccgaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttaagtgtttgagtttgtcggtccgtgtaacaattctggaaggtcttgtttttcctaattggaactggtaaaagctctagttttctaagaaaaccaacttttaacgtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92349" stop="91425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92049" g_stop="91732" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="328"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E595896" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92049" e_stop="91732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTT-AGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGT</genome_strand>
        <mrna_strand>CTGAGATTGAAACCAAGGCAGAAGAGGAGTCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTAAGTGTTTGAGTTTGTCGGTCCGTGTAACAATTCTGGAAGGTCTTG-TTTTTCCTAATTGGAACTGGTAAAAGCTCTAG-TTTTCTAAGAAAACCAACTTTTAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242293" ref_strand="+" ref_description="SGN-E242293 [cLEE-3-K19]">
      <seq>tccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgaaaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92450" stop="91435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92150" g_stop="91734" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E242293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92150" e_stop="91734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGAC</genome_strand>
        <mrna_strand>TCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339483" ref_strand="+" ref_description="SGN-E339483 [cTOF-4-N18]">
      <seq>tgcgtggtaaaagggtgccttgaaatcaatcctaggcaccccaattatcaaggcaccttcgggagagagtagtaacagacccagaggacgaagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagaagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagaagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatgataggtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaatctgggaggtcttgttttttcctaattggaactggtaaaagctctangtttttctaaggaaatcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92692" stop="91438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92392" g_stop="92310" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91738" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="576" r_length="490" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E339483" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92392" e_stop="92310"/>
          <exon e_start="92224" e_stop="91738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTGGTAAAAGGGTG-CTTGAAATCAATCCTAGGCA-CCCAATTATCAAGGCA-CTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGA-GAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAG-AGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAG-AGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATA-GTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTA-GTTTTTCTAAGGAAATCAACTTT</genome_strand>
        <mrna_strand>TGCGTGGTAAAAGGGTGCCTTGAAATCAATCCTAGGCACCCCAATTATCAAGGCACCTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTAT-GATAGGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAAC-AATCTGGGAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTANGTTTTTCTAAGGAAATCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252188" ref_strand="+" ref_description="SGN-E252188 [cLEG-8-N5]">
      <seq>aattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaaatagnttttttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92652" stop="91442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92352" g_stop="92310" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91738" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="535" r_length="492" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E252188" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92352" e_stop="92310"/>
          <exon e_start="92224" e_stop="91738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGG-AATAG----TTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTT</genome_strand>
        <mrna_strand>AATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAAATAGNTTTTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595393" ref_strand="+" ref_description="SGN-E595393 [38665]">
      <seq>tctgaactccaagatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttagtgtttgagtttgtcggtccgtgtaacaattctggaaggtcttgtttttcctaattggaactggtaaaagctctagttttctaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92305" stop="91442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92005" g_stop="91738" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E595393" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92005" e_stop="91738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTT</genome_strand>
        <mrna_strand>TCTGAACTCCAAGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTAGTGTTTGAGTTTGTCGGTCCGTGTAACAATTCTGGAAGGTCTTG-TTTTTCCTAATTGGAACTGGTAAAAGCTCTAG-TTTTCTAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721450" ref_strand="+" ref_description="SGN-E721450 [FC13DG12]">
      <seq>gcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92753" stop="91446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92453" g_stop="92310" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91744" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="625" r_length="481" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E721450" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92453" e_stop="92310"/>
          <exon e_start="92224" e_stop="91744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATC</genome_strand>
        <mrna_strand>GCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307773" ref_strand="+" ref_description="SGN-E307773 [cLEY-16-F6]">
      <seq>ctttacaggacgagagtgtgaagttgacagcaaaacttatgtaccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92532" stop="91446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92232" g_stop="91744" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E307773" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92232" e_stop="91744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATC</genome_strand>
        <mrna_strand>CTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATGTACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575279" ref_strand="+" ref_description="SGN-E575279 [34878]">
      <seq>agatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagattgaaaccaaggcagaagaggaatctgcatccgaagagtctgaactcaaggatgagctatagataatttcctaagatatgttcttttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttattgtatgagtttgtcggtccgtgtaacaaatctggaaggtcttgtttttcctaattggaactggtaaaagctctagttttctaaggaaaaaaccccccaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92715" stop="91441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92415" g_stop="92310" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91747" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="579" r_length="473" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E575279" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92415" e_stop="92310"/>
          <exon e_start="92224" e_stop="91747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAA</genome_strand>
        <mrna_strand>AGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAGGAATCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAATTTCCTAAGATATGTTCTTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTATTGTATGAGTTTGTCGGTCCGTGTAACAAATCTGGAAGGTCTTG-TTTTTCCTAATTGGAACTGGTAAAAGCTCTAG-TTTTCTAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255664" ref_strand="+" ref_description="SGN-E255664 [cLEG-36-F14]">
      <seq>aattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaaccaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaagggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92652" stop="91442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92352" g_stop="92310" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91747" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="522" r_length="479" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="558"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E255664" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92352" e_stop="92310"/>
          <exon e_start="92224" e_stop="91747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAA-CAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAA</genome_strand>
        <mrna_strand>AATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACCAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353727" ref_strand="+" ref_description="SGN-E353727 [cTOS-10-E16]">
      <seq>aattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92652" stop="91448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92352" g_stop="92310" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91748" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="520" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E353727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92352" e_stop="92310"/>
          <exon e_start="92224" e_stop="91748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGA</genome_strand>
        <mrna_strand>AATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231454" ref_strand="+" ref_description="SGN-E231454 [cLED-4-A4]">
      <seq>ggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92525" stop="91460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92225" g_stop="91760" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E231454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92225" e_stop="91760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAG</genome_strand>
        <mrna_strand>GGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574066" ref_strand="+" ref_description="SGN-E574066 [33476]">
      <seq>tgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggttacatcaaaatatggttggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggctttgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagatgaagctgaagaacctgagattgaaaccaaggcagaggaggagtctgcatccgaagagtctgaactcaaggatgaactatagataatgtcctaagatatgttcctttttcccggaaacaacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaattttgtcagtcttgcattatccttgttttagtgtataagtttgtcggtccgtataacaaatctggaaggtcttgtttttcctaattagaacttgctaaaaggtctagtttcttaaggaaaacaagtttaacgtaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92826" stop="91438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92526" g_stop="92310" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91773" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="665" r_length="448" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E574066" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92526" e_stop="92310"/>
          <exon e_start="92224" e_stop="91773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTG</genome_strand>
        <mrna_strand>TGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTTACATCAAAATATGGTTGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTTGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAGGAGGAGTCTGCATCCGAAGAGTCTGAACTCAAGGATGAACTATAGATAATGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAATTTTGTCAGTCTTGCATTATCCTTGTTTTAGTGTATAAGTTTGTCGGTCCGTATAACAAATCTGGAAGGTCTTG-TTTTTCCTAATTAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355373" ref_strand="+" ref_description="SGN-E355373 [cTOS-25-E15]">
      <seq>aagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtangaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgntttagtgtatgagtttgtcgttccgtgtacaaatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92945" stop="91501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92645" g_stop="92310" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91801" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="759" r_length="423" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E355373" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92645" e_stop="92310"/>
          <exon e_start="92224" e_stop="91801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGA</genome_strand>
        <mrna_strand>AAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTANGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGNTTTAGTGTATGAGTTTGTCGTTCCGTGT-ACAAATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290515" ref_strand="+" ref_description="SGN-E290515 [cLES-20-O15]">
      <seq>gagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92744" stop="91508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92444" g_stop="92310" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91808" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="552" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E290515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92444" e_stop="92310"/>
          <exon e_start="92224" e_stop="91808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAA</genome_strand>
        <mrna_strand>GAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403413" ref_strand="+" ref_description="SGN-E403413 [PPC-10-F11]">
      <seq>gtcatattgttcactgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcaggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagatgaagctgaagaacctgagattgaaaccaaggcagaagaggagtctgcatccgaagagtctgaactcaaggatgagctatagataatgtcctaagatatgttcctttttcccggaaaacacacgttgttgtgctatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtttaaacttaaagaatttgtcagtcttgcattatccctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93011" stop="91539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91839" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="784" r_length="382" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E403413" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTT</genome_strand>
        <mrna_strand>GTCATATTGTTCACTGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCAGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAGGAGTCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAATGTCCTAAGATATGTTCCTTTTTCCCGGAAAACACACGTTGTTGTGCTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGT-TTAAACTT--AAAGAA-TTTGTCAGTCTTGCATTATCCCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410925" ref_strand="+" ref_description="SGN-E410925 [PPI-18-B3]">
      <seq>gtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcaggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagatgaagctgaagaacctgagattgaaaccaaggcagaagaggagtctgcatccgaagagtctgaactcaaggatgagctatagataatgtcctaagatatgttcctttttcccggaaaacacacgttgttgtgctatgtttctcaacacgtgaaagatgtangaatagtttaaagtcatagtttaaacttaaaggaattttgtcagtcttgcattatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92856" stop="91546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92556" g_stop="92310" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91844" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="627" r_length="380" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E410925" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92556" e_stop="92310"/>
          <exon e_start="92224" e_stop="91844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTT-AGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGT</genome_strand>
        <mrna_strand>GTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCAGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAGGAGTCTGCATCCGAAGAGTCTGAACTCAAGGATGAGCTATAGATAATGTCCTAAGATATGTTCCTTTTTCCCGGAAAACACACGTTGTTGTGCTATGTTTCTCAACACGTGAAAGATGTANGAATAGTTTAAAGTCATAGT-TTAAACTT-AAAGGAATTTTGTCAGTCTTGCATTATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710696" ref_strand="+" ref_description="SGN-E710696 [FA56BB01]">
      <seq>ctctaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttcctagaaagacttaataagaaagactatgaggtcatattcttcactgatccagtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaataatttaagtcctagccttaaacttaaaaaagaattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93341" stop="91561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93042" g_stop="92951" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="494" r_length="402" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92224" g_stop="91861" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="859" r_length="365" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E710696" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93042" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTT-AAAAAGAATTTTGT</genome_strand>
        <mrna_strand>CTCTAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTAGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACTGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAATTTAAGTCCTAGCCTTAAACTTAAAAAAGAATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283731" ref_strand="+" ref_description="SGN-E283731 [cLES-1-G9]">
      <seq>ataatgcattcacaaaccctgtcatatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtangaatagtttaattcatagtcttaaacttaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92738" stop="91568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92438" g_stop="92310" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91868" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="486" r_length="357" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E283731" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92438" e_stop="92310"/>
          <exon e_start="92224" e_stop="91868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGA</genome_strand>
        <mrna_strand>ATAATGCATTCACAAACCCTGTCATATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTANGAATAGTTTAATTCATAGTCTTAAACTTAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342297" ref_strand="+" ref_description="SGN-E342297 [cTOF-8-I16]">
      <seq>caatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaacaacacgttgttgtgggtatgtttctcaacacgtgaagaatgtaggaatagntttagttcatagtcttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92972" stop="91577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92672" g_stop="92310" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91877" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="712" r_length="349" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E342297" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92672" e_stop="92310"/>
          <exon e_start="92224" e_stop="91877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGT-GGTATGTTTCTCAACACGTGAAGAATGTAGGAATAG-TTTAGTTCATAGTCTTAAAC</genome_strand>
        <mrna_strand>CAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGG-AACAACACGTTGTTGTGGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGNTTTAGTTCATAGTCTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705090" ref_strand="+" ref_description="SGN-E705090 [FA26AE09]">
      <seq>aaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagaccaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttcctagaaagacttaataagaaagactatgaggtcatattcttcactgatccagtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccnaggcagaagaggagtctgcatcggaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93583" stop="91649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93283" g_stop="93189" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="246" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="648" r_length="402" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92224" g_stop="91949" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="924" r_length="276" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E705090" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93283" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGA</genome_strand>
        <mrna_strand>AAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTAGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACTGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCNAGGCAGAAGAGGAGTCTGCATCGGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728566" ref_strand="+" ref_description="SGN-E728566 [LA18BA01]">
      <seq>accattaaccgcttagctaaacttcttcgatttgagaccaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttcctagaaagacttaataagaaagactatgaggtcatattcttcactgatccagtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggaagagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93526" stop="91653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93226" g_stop="93189" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="189" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="591" r_length="402" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92224" g_stop="91953" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="863" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E728566" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93226" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCC</genome_strand>
        <mrna_strand>ACCATTAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTAGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACTGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGAAGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448608" ref_strand="+" ref_description="SGN-E448608 [cSTS-3-P5]">
      <seq>agaaagactatgaggtcatattcttcaccgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagatgaagctgaagaacctgagattgaaaccaaggcagaagaagagtctgcatccgaagagtctgaactcaaagatgagctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93264" stop="91682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92964" g_stop="92951" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="416" r_length="402" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92224" g_stop="91982" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="659" r_length="243" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E448608" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92964" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAG</genome_strand>
        <mrna_strand>AGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACCGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAACCAAGGCAGAAGAAGAGTCTGCATCCGAAGAGTCTGAACTCAAAGATGAGCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348172" ref_strand="+" ref_description="SGN-E348172 [cTOF-27-L15]">
      <seq>atatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93333" stop="91687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93033" g_stop="92951" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="485" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92224" g_stop="91987" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="723" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E348172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93033" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGC</genome_strand>
        <mrna_strand>ATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295721" ref_strand="+" ref_description="SGN-E295721 [cLET-25-P4]">
      <seq>tcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgctagaaatcaatcctaggcacccaattatcaaggcacttggggagagagtagtaacagacccacaggacgagactgtgaaactgacagcaaaacttatataccatacagctttaatggatagtggctgcgatctgagtgatccaaaggatcttgccttccacatctacagctgagtatagagcagactaaacatcagccctgatgcaacagttgaggaagaagaacacgaatctgatgaacctgagactgaaaccaaggcaaaagaggagtatgcctctgatgagtctgaactcaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92818" stop="91690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92518" g_stop="92310" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="91990" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="444" r_length="235" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E295721" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92518" e_stop="92310"/>
          <exon e_start="92224" e_stop="91990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATG</genome_strand>
        <mrna_strand>TCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTAGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTGGGGAGAGAGTAGTAACAGACCCACAG.....................................................................................GACGAGACTGTGAAACTGACAGCAAAACTTATATACCATACAGCTTTAATGGATAGTGGCTGCGATCTGAGTGATCCAAAGGATCTTGCCTTCCACATCTACAGCTGAGTATAGAGCAGACTAAACATCAGCCCTGATGCAACAGTTGAGGAAGAAGAACACGAATCTGATGAACCTGAGACTGAAACCAAGGCAAAAGAGGAGTATGCCTCTGATGAGTCTGAACTCAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439030" ref_strand="+" ref_description="SGN-E439030 [cSTA-10-L17]">
      <seq>ccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaggcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcaggagagagtagtaacagacccagaggatgagagtgtgaagctgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatcttagtgatccgaaggattttgcctcccacatctacagctcagttaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagatgaagctgaagaacctgagattgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92940" stop="91737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92640" g_stop="92310" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="92037" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="519" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E439030" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92640" e_stop="92310"/>
          <exon e_start="92224" e_stop="92037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAAC</genome_strand>
        <mrna_strand>CCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAGGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCAGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GATGAGAGTGTGAAGCTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTTAGTGATCCGAAGGATTTTGCCTCCCACATCTACAGCTCAGTTAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGATGAAGCTGAAGAACCTGAGATTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283044" ref_strand="+" ref_description="SGN-E283044 [cLER-17-L21]">
      <seq>ggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccanaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="92854" stop="91767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92554" g_stop="92310" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92224" g_stop="92067" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="403" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E283044" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92554" e_stop="92310"/>
          <exon e_start="92224" e_stop="92067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGA</genome_strand>
        <mrna_strand>GGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCANAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710763" ref_strand="+" ref_description="SGN-E710763 [FA56CF01]">
      <seq>cgctcttctacatcaccggtgccagcaaagaacagttggagaaactctcccttcctagaaagacttaataagaaagactatgaggtcatattcttcactgatccactagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacacccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagccaagcctacatgcgtggtaaaagggtgcttgaaatccatcctacgcacccaattatcaaggcacttcgggagacagtagtaacagacccacaggacgagagtgtgaagctgacagcaaaacttatataccacacagctttaatggagagcggcttcgatctgagtgatccaaaggattttgcctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93330" stop="91831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93033" g_stop="92951" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.672" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="488" r_length="404" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92224" g_stop="92131" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="582" r_length="94" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E710763" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93033" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="92131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAA-TCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACA-CCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAG-CAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCC</genome_strand>
        <mrna_strand>CGCTCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAACTCTCCCTTCCTAGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACTGATCCACTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCCAAGCCTACATGCGTGGTAAAAGGGTGCTTGAAATCCATCCTACGCACCCAATTATCAAGGCACTTCGGGAGACAGTAGTAACAGACCCACAG.....................................................................................GACGAGAGTGTGAAGCTGACAGCAAAACTTATATACCACACAGCTTTAATGGAGAGCGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295027" ref_strand="+" ref_description="SGN-E295027 [cLET-40-E15]">
      <seq>aaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccataatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaagagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtgacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttctggagagagtagtaacagacccataggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93016" stop="91848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92962" g_stop="92951" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="414" r_length="402" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92224" g_stop="92148" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="491" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E295027" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92962" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="92148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCC</genome_strand>
        <mrna_strand>AAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCATAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAAGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTGACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCTGGAGAGAGTAGTAACAGACCCATAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286751" ref_strand="+" ref_description="SGN-E286751 [cLES-14-B18]">
      <seq>gcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93516" stop="91872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93216" g_stop="93189" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="179" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="581" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92224" g_stop="92172" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="634" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E286751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93216" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="92172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGA</genome_strand>
        <mrna_strand>GCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555422" ref_strand="+" ref_description="SGN-E555422 [cTSC-3-D11]">
      <seq>aagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatccctaggcaccaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94003" stop="92046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93703" g_stop="93683" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="187" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="329" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="480" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92711" g_stop="92346" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="846" r_length="366" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E555422" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93703" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAAT-CCTAGGCACCCAATTATC</genome_strand>
        <mrna_strand>AAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCCTAGGCA-CCAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209987" ref_strand="+" ref_description="SGN-E209987 [cLEC-40-K16]">
      <seq>cgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93533" stop="92060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93233" g_stop="93189" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="196" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92711" g_stop="92360" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="548" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E209987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93233" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTA</genome_strand>
        <mrna_strand>CGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408014" ref_strand="+" ref_description="SGN-E408014 [PPI-9-L15]">
      <seq>cgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgaaaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcactggagccagcaaagaacagttggagaaatctcccttccttgaaaggcttaataagaaagactatgaggtcatattcttcaccgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcccagcagcaggcatacatgcgtggtaaaaagggtgcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93762" stop="92070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93462" g_stop="93411" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="194" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="345" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92711" g_stop="92370" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="688" r_length="343" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E408014" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93462" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGT-AAAAGGGTGCTTGAA</genome_strand>
        <mrna_strand>CGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAAAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACTGGAGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGGCTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACCGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCCCAGCAGCAGGCATACATGCGTGGTAAAAAGGGTGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278610" ref_strand="+" ref_description="SGN-E278610 [cLER-10-F8]">
      <seq>aagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93356" stop="92087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93056" g_stop="92951" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92711" g_stop="92387" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="431" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E278610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93056" e_stop="92951"/>
          <exon e_start="92711" e_stop="92387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTG</genome_strand>
        <mrna_strand>AAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406091" ref_strand="+" ref_description="SGN-E406091 [PPI-2-N19]">
      <seq>cgcaaacttgccgaagatgctccagatgaaactactgacaaggagatgagagctgttgaagagtccagtgaggaaaatgaaaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcactggagccagcaaagaacagttggagaaatctcccttccttgaaaggcttaataagaaagactatgaggtcatattcttcaccgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacccccttgtgtagtggaacatcaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93762" stop="92102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93462" g_stop="93411" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="194" r_length="142" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="345" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92711" g_stop="92402" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="652" r_length="307" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E406091" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93462" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGC</genome_strand>
        <mrna_strand>CGCAAACTTGCCGAAGATGCTCCAGATGAAACTACTGACAAGGAGATGAGAG................................................................................CTGTTGAAGAGTCCAGTGAGGAAAATGAAAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACTGGAGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGGCTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACCGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGAC-CCCCTTGTGTAGTGG-AACATC-AAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264979" ref_strand="+" ref_description="SGN-E264979 [cLEI-10-D11]">
      <seq>cgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93762" stop="92126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93462" g_stop="93411" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="194" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="345" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92711" g_stop="92426" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="631" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E264979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93462" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCAC</genome_strand>
        <mrna_strand>CGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588476" ref_strand="+" ref_description="SGN-E588476 [42030]">
      <seq>ctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttggacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgaaaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcactggagccagcaaagaacagttggagaaatctcccttccttgaaaggcttaataagaaagactatgaggtcatattcttcaccgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttgaagatgtcaagataagcaaccgtttggccgacaccccttgtgtagtggtaacatcaaaatacggatggagtgcatatatggacgaaaataatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94031" stop="92129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93731" g_stop="93683" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="216" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="358" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="509" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92711" g_stop="92429" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="793" r_length="284" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E588476" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93731" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTT-GACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGA-GAAAATAATGCATT</genome_strand>
        <mrna_strand>CTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAAAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACTGGAGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGGCTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTCTTCACCGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAACCGTTTGGCCGACACCCCTTGTGTAGTGGTAACATCAAAATACGGATGGAGTGCATATATGGACGAAAATAATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258305" ref_strand="+" ref_description="SGN-E258305 [cLEG-49-M14]">
      <seq>gccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgctgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacngatggagtgcgtatatggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93753" stop="92139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93453" g_stop="93411" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="185" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="336" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92711" g_stop="92439" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="609" r_length="273" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E258305" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93453" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAA</genome_strand>
        <mrna_strand>GCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGCTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACNGATGGAGTGCGTATATGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342590" ref_strand="+" ref_description="SGN-E342590 [cTOF-7-A12]">
      <seq>tcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93874" stop="92214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93574" g_stop="93411" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="306" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="457" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92711" g_stop="92514" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="655" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E342590" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93574" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAG</genome_strand>
        <mrna_strand>TCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413364" ref_strand="+" ref_description="SGN-E413364 [STM-17-D22]">
      <seq>gtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccggatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcactggagccagcaaagaacagttggagaaatctcccttccttgaaaggcttaataagaaagactatgaggtcatattgttcactgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagactactcttgctagtgacaacgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94048" stop="92224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93748" g_stop="93683" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="232" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="374" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="525" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92711" g_stop="92524" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="713" r_length="188" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E413364" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93748" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGA</genome_strand>
        <mrna_strand>GTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCGGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACTGGAGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGGCTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTGTTCACTGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGACTACTCTTGCTAGTGACAACGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577527" ref_strand="+" ref_description="SGN-E577527 [59930]">
      <seq>tatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccggatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacataactggagccagcaaagaacagttggagaaatctcccttccttgaaaggcttaataagaaagactatgaggtcatattgttcactgatcccgtagatgaatacctcatgcaatatcttatggactatgaggacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94319" stop="92295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94019" g_stop="94002" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="234" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="400" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="542" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="693" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92711" g_stop="92595" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="810" r_length="117" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E577527" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94019" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACC</genome_strand>
        <mrna_strand>TATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCGGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATAACTGGAGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGGCTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTCATATTGTTCACTGATCCCGTAGATGAATACCTCATGCAATATCTTATGGACTATGAGGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269222" ref_strand="+" ref_description="SGN-E269222 [cLEI-16-F8]">
      <seq>tcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94047" stop="92354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93747" g_stop="93683" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="231" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="373" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="524" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92711" g_stop="92654" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="582" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E269222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93747" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATG</genome_strand>
        <mrna_strand>TCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272409" ref_strand="+" ref_description="SGN-E272409 [cLEM-19-M4]">
      <seq>tccgcagacttgccgaagaggatgcggatgaaactaataacaaggagaagagagatgttgaacagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagctcggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtgaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaatatgaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93764" stop="92356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93464" g_stop="93411" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="196" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="347" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92711" g_stop="92656" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="403" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E272409" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93464" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTA</genome_strand>
        <mrna_strand>TCCGCAGACTTGCCGAAGAGGATGCGGATGAAACTAATAACAAGGAGAAGAGAG................................................................................ATGTTGAACAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTCGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTGAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATATGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303840" ref_strand="+" ref_description="SGN-E303840 [cLEX-4-N18]">
      <seq>ttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="93997" stop="92366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93697" g_stop="93683" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="181" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="323" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="474" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92711" g_stop="92666" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="520" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E303840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93697" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATC</genome_strand>
        <mrna_strand>TTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212392" ref_strand="+" ref_description="SGN-E212392 [cLEC-74-D3]">
      <seq>tggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94176" stop="92680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93876" g_stop="93683" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="360" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="502" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="92980" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="624" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E212392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93876" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCC</genome_strand>
        <mrna_strand>TGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570405" ref_strand="+" ref_description="SGN-E570405 [14984]">
      <seq>tgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccggatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacataactggagacagcaaagaacagttggagaaatctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94345" stop="92683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94045" g_stop="94002" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="260" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="426" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="568" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93101" g_stop="92983" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="687" r_length="119" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E570405" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94045" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCT</genome_strand>
        <mrna_strand>TGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCGGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATAACTGGAGACAGCAAAGAACAGTTGGAGAAATCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418883" ref_strand="+" ref_description="SGN-E418883 [STM-28-D23]">
      <seq>gagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccggatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcactagaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacataactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94394" stop="92716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94094" g_stop="94002" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="309" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="475" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="617" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93101" g_stop="93016" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="703" r_length="86" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E418883" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94094" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="93016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCG</genome_strand>
        <mrna_strand>GAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCGGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCACTAGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320956" ref_strand="+" ref_description="SGN-E320956 [cTOB-13-I8]">
      <seq>aaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94376" stop="92739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94076" g_stop="94002" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="291" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="457" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="599" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93101" g_stop="93039" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="662" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E320956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94076" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="93039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCA</genome_strand>
        <mrna_strand>AAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472033" ref_strand="+" ref_description="SGN-E472033 [cSTB-27-A8]">
      <seq>gtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccggatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgataaagcttggtattatagaagatgcaactaacagaaaccgcttagctaaacttctccgatttgagaccaccaaatcagatggtaaattaacttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94048" stop="92773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93748" g_stop="93683" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="232" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="374" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="93073" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="403" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E472033" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93748" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="93073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCAC</genome_strand>
        <mrna_strand>GTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCGGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATAAAGCTTGGTATTATAGAAGATGCAACTAACAGAAACCGCTTAGCTAAACTTCTCCGATTTGAGAC.......................................................................................CACCAAATCAGATGGTAAATTAACTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200519" ref_strand="+" ref_description="SGN-E200519 [cLEB-8-F11]">
      <seq>gcacgagcttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaaagacaattaagaagaaaactcatccgtaaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94201" stop="92889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="221" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="390" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="532" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93101" g_stop="93093" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="541" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E200519" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="93093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTG-AAGACAATTAAGAA-AAAACTCATCCGTAA-GGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATC</genome_strand>
        <mrna_strand>G-CTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAAGACAATTAAGAAGAAAACTCATCCGTAAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297554" ref_strand="+" ref_description="SGN-E297554 [cLET-28-I1]">
      <seq>cgtggagtcacttcaatgctgaaggtgatgtaaagatcaaggctggactattcatccctcctaaagccccttatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcaaatgaatttaatgaattggtgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcaatttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccaatgatgaaaatgagaagaaaggtcaatatgcccaattctggaatgaatttggaaagtcgattaagcttggtattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94173" stop="92939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93873" g_stop="93683" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="357" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93239" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="449" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E297554" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93873" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATA</genome_strand>
        <mrna_strand>CGTGGAGTCACTTCAATGCTGAAGGTGATGTAAAGATCAAGGCTGGACTATTCATCCCTCCTAAAGCCCCTTATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAAATGAATTTAATGAATTGGTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAATTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAATGATGAAAATGAGAAGAAAGGTCAATATGCCCAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443025" ref_strand="+" ref_description="SGN-E443025 [cSTA-35-N14]">
      <seq>gagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccggatgaaactaatgacaaggagaagagagatgttgaagagtccagtgaggaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94394" stop="92957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94094" g_stop="94002" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="309" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="475" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93330" g_stop="93257" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="549" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E443025" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94094" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCG</genome_strand>
        <mrna_strand>GAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCGGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGAGGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314288" ref_strand="+" ref_description="SGN-E314288 [cTOA-21-K17]">
      <seq>ctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94432" stop="92963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94132" g_stop="94002" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="513" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93330" g_stop="93263" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="581" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E314288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94132" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGA</genome_strand>
        <mrna_strand>CTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243358" ref_strand="+" ref_description="SGN-E243358 [cLEF-16-N20]">
      <seq>agttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94140" stop="92997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93840" g_stop="93683" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="324" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93330" g_stop="93297" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="358" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E243358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93840" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAA</genome_strand>
        <mrna_strand>AGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323781" ref_strand="+" ref_description="SGN-E323781 [cTOC-5-D4]">
      <seq>aagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaaactcatccgtaaggcccttgacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94336" stop="93164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94036" g_stop="94002" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="251" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93464" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="365" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E323781" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94036" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAG-AAAAAACTCATCCGTAAGGCCCTTGACATGAT</genome_strand>
        <mrna_strand>AAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAAACTCATCCGTAAGGCCCTTGACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448827" ref_strand="+" ref_description="SGN-E448827 [cSTS-4-H9]">
      <seq>atttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgacgaggacgagtcaattgatgaagaggatacatctgaaagcagttcttctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaaaaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcattgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatcccgcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95674" stop="93209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95374" g_stop="95352" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="141" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="341" r_length="200" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="557" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93576" g_stop="93509" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="625" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E448827" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95374" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTT</genome_strand>
        <mrna_strand>ATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGACGAGGACGAGTCAATTGATGAAGAGGATACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCAGTTCTTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAAAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCATTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCGCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566253" ref_strand="+" ref_description="SGN-E566253 [4692]">
      <seq>catgaaagctatatggcttcaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatagtagagttcaaagcgtgttctattcatccctcctaaagacccctcatgatatgtatgagagctactacaacaacagaggcaatccaacttgaagttatatgtacagacggggttttcatctcagatgaatttaatgaattgttgggccaagtacttgaatttcctaagtgggtcttgttgattactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94380" stop="93364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94080" g_stop="94002" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="303" r_length="225" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93576" g_stop="93564" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="316" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E566253" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94080" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGAT-GTAGAGTTCAAGGC-TGTTCTATTCATCCCTCCTAAAG-CCCCTCATGATTTGTATGAGAGCTACTACAAC-ACA-AAGCAATCCAACTTGAAGTTATATGT-CAGAC-GGGTTTTCATCTCAGATGAATTTAATGAATTGTT-GCCCAAGTACTTGAATTTCCTAA-TGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATT</genome_strand>
        <mrna_strand>CATGAAAGCTATATGGCTTC-AAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATAGTAGAGTTCAAAGCGTGTTCTATTCATCCCTCCTAAAGACCCCTCATGATATGTATGAGAGCTACTACAACAACAGAGGCAATCCAACTTGAAGTTATATGTACAGACGGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGGGCCAAGTACTTGAATTTCCTAAGTG..........................................................................................................GGTCTTGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452905" ref_strand="-" ref_description="SGN-E452905 [cSTS-18-E16]">
      <seq>caatttggtgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctaagagatgaagcaggtgaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgacgaggacgagtcaattgatgaagaggaaacatctgaaagcagttcttctgaggaagagggagaagaagaagatgcagagaaggctgaagatgagaaaaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatcccgcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95954" stop="93424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95654" g_stop="95575" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="219" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="337" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="537" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93898" g_stop="93724" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="712" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E452905" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452905" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95654" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATG</genome_strand>
        <mrna_strand>CAATTTGGTGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGTGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGACGAGGACGAGTCAATTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCAGTTCTTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCTGAAGATGAGAAAAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCGCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592089" ref_strand="+" ref_description="SGN-E592089 [45815]">
      <seq>agaaaagaaaattcttttcattcgcgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggcgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctaagagatgaagcaggtgaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgacgaggacgagtcaattgatgaagaggatacatctgaaagcagttcttctgaggaagagggagaagaagaagatgagaaaaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96181" stop="93446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95881" g_stop="95784" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="225" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="364" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="482" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="664" r_length="182" r_score="0.895"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93898" g_stop="93746" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="817" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E592089" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95881" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTC</genome_strand>
        <mrna_strand>AGAAAAGAAAATTCTTTTCATTCGCGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGCGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGTGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGACGAGGACGAGTCAATTGATGAAGAGGATACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCAGTTCTTCTGAGGAAGAGGGAGAAGAAGAAGAT---------------GA-GA-AA-AAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304417" ref_strand="+" ref_description="SGN-E304417 [cLEX-12-I19]">
      <seq>tttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaagaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgattngtatgagagctactacaacacatagcaatccaacttgaagttatatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95759" stop="93446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95459" g_stop="95352" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="226" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="426" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93898" g_stop="93746" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="579" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E304417" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95459" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTC</genome_strand>
        <mrna_strand>TTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTNGTATGAGAGCTACTACAACACATAGCAATCCAACTTGAAGTTATATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271947" ref_strand="+" ref_description="SGN-E271947 [cLEM-8-M13]">
      <seq>tatgtctgggtatcaaaggcagatggggcatttgccatttgggaagattcatggaatgaacctgttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaagaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtacagttcaaggctggtctattcatccctccttaagcccctcatgatttgtttgagagctactacaacacaaagcaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95789" stop="93463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95489" g_stop="95352" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="256" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="456" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93898" g_stop="93763" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="592" r_length="136" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E271947" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95489" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCA</genome_strand>
        <mrna_strand>TATGTCTGGGTATCAAAGGCAGATGGGGCATTTGCCATTTGGGAAGATTCATGGAATGAACCTGTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTACAGTTCAAGGCTGGTCTATTCATCCCTCCTTAAGCCCCTCATGATTTGTTTGAGAGCTACTACAACACAAAGCAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336696" ref_strand="+" ref_description="SGN-E336696 [cTOE-5-I11]">
      <seq>ttgaagtcatcagcaagcacaatgacgacaaacaatatgtctgggaatcaaaggcagatggggcatttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaagaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95908" stop="93469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95608" g_stop="95575" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="173" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="291" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="491" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93898" g_stop="93769" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="621" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E336696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95608" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGC</genome_strand>
        <mrna_strand>TTGAAGTCATCAGCAAGCACAATGACGACAAACA....................................................................................ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314279" ref_strand="+" ref_description="SGN-E314279 [cTOA-21-A19]">
      <seq>ttgtggctgactatgttgaagtcatcagcaagcacaatgacgacaaacaatatgtctgggaatcaaaggcagatggggcatttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaagaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95923" stop="93553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95623" g_stop="95575" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="188" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="306" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="506" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93898" g_stop="93853" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="552" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E314279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95623" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTG</genome_strand>
        <mrna_strand>TTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA....................................................................................ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440345" ref_strand="+" ref_description="SGN-E440345 [cSTA-16-M6]">
      <seq>ctgcgtatcttgtggctgactatgctgaagtcatcatcaagcccaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctaagagatgaagcaggtgaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggccagcaaagaggttgagaaggaaattcctgctgaccaggacgagtcaattgatgaagaggaaacatctgaaagccgttcttctgaggaagagggagaagaagaagatgccagagaaggctgaagatgagaaaaagcctaaaactaagacggtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagtgacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95932" stop="93554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95632" g_stop="95575" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="197" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="315" r_length="118" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="516" r_length="201" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93898" g_stop="93854" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="561" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E440345" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95632" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATG-CAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCT</genome_strand>
        <mrna_strand>CTGCGTATCTTGTGGCTGACTATGCTGAAGTCATCATCAAGCCCAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGTGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCCAGCAAAGAGGTTGAGAAGGAAATTCCTGCTGACCAGGACGAGTCAATTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCCGTTCTTCTGAGGAAGAGGGAGAAGAAGAAGATGCCAGAGAAGGCTGAAGATGAGAAAAAGCCTAAAACTAAGACGGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTGACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280622" ref_strand="+" ref_description="SGN-E280622 [cLER-1-P5]">
      <seq>tcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaagaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="94917" stop="93692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="129" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="329" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93898" g_stop="93882" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="346" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E280622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAA</genome_strand>
        <mrna_strand>GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582894" ref_strand="+" ref_description="SGN-E582894 [8527]">
      <seq>gttttactctgtgtatcttggtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctacgagatgaagcaggtgaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagcaaggaagttcctgctgacgaggacgagtcaattgatgaagatgaaacatctgaaagcagttcttctgaggaagcagggagaagatgaagatgcagagaaggccgaagatgagaaaaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgacaagctatatggcttcgaaggcccaacaggaagtgacagatgacgcaatataataaggttctatcactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="95940" stop="93709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95640" g_stop="95575" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="206" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="325" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94201" g_stop="94009" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="524" r_length="199" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E582894" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95640" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTACTCTGTGTATCTT-GTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAG-AAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAG-AGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGA-AAGCTATATGGCTTCGAA-GCCCAA-AGGAAGTTACAGATGAAG-AATATAATAA-GTTCTATCACTCTCT</genome_strand>
        <mrna_strand>GTTTTACTCTGTGTATCTTGGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTACGAGATGAAGCAGGTGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGCAAGGAAGTTCCTGCTGACGAGGACGAGTCAATTGATGAAGATGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCAGTTCTTCTGAGGAAGCAGGGAGAAGATGAAGATGCAGAGAAGGCCGAAGATGAGAAAAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGACAAGCTATATGGCTTCGAAGGCCCAACAGGAAGTGACAGATGACGCAATATAATAAGGTTCTATCACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213553" ref_strand="+" ref_description="SGN-E213553 [cLEC-71-F19]">
      <seq>tccaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgacaaacaatatgtctgggaatcaaaggcagatggggcatttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgangaagagggagaagaagaagatgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96381" stop="93856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96171" g_stop="96157" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="96" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="208" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="335" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="474" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="592" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94201" g_stop="94156" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="638" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E213553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96171" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGA</genome_strand>
        <mrna_strand>TCCAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA....................................................................................ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGANGAAGAGGGAGAAGAAGAAGATGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316206" ref_strand="+" ref_description="SGN-E316206 [cTOA-23-C10]">
      <seq>gacaagattaggttccttgcactcactgacaaggaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgacaaacaatatgtctgggaatcaaaggcagatggggcatttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctngaagcacttcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96371" stop="94191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96071" g_stop="95997" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="187" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="314" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="453" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="571" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94201" g_stop="94191" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="582" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E316206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96071" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACT</genome_strand>
        <mrna_strand>GACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA....................................................................................ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTNGAAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448679" ref_strand="+" ref_description="SGN-E448679 [cSTS-3-L18]">
      <seq>ggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattctttccattcgtgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctacgagatgaagcaggtgaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgacgaggacgagtcaattgatgaagatgaaacatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96529" stop="94191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96229" g_stop="96157" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="154" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="266" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="393" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="532" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="650" r_length="118" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E448679" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96229" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT</genome_strand>
        <mrna_strand>GGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTACGAGATGAAGCAGGTGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGACGAGGACGAGTCAATTGATGAAGATGAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329699" ref_strand="+" ref_description="SGN-E329699 [cTOD-3-F22]">
      <seq>atcttttttatggatttgatttccaaagcttctgatgcaggggacgggattatgttccttgcactcactgacaaagaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaagtgttggaatgaccaaagaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgacaaacaatatgtctgggaatcaaaggcagatggggcatttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96381" stop="94250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96192" g_stop="96157" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="117" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="229" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="356" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="495" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94610" g_stop="94550" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="556" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E329699" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96192" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAG</genome_strand>
        <mrna_strand>ATCTTTTTTATGGATTTGATTTCCAAAGCTTCTGAT...............................................................................GCAGGGGACGGGATTATGTTCCTTGCACTCACTGACAAAGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAAGTGTTGGAATGACCAAAGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA....................................................................................ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442543" ref_strand="+" ref_description="SGN-E442543 [cSTA-33-N6]">
      <seq>gacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattcttttcattcgcgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggcgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctaagagatgaagcangtgaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96528" stop="94281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96228" g_stop="96157" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="153" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="265" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="392" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="531" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.451" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94610" g_stop="94581" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="561" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E442543" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96228" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATC</genome_strand>
        <mrna_strand>GACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTTCATTCGCGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGCGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCANGTGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622655" ref_strand="-" ref_description="SGN-E622655 [73024]">
      <seq>ctttttgaaggaactgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattctttccattcgtgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttctgaagatacatggaatgaacctcttggtcgtggaactgaaattagactgcatctacgagatgaagcaggtgaatatttggatgagctcaaactaaaggtgagtagacagagatgcatactgaaggaaaatttctccatattttgttaactaatgggtacatgtcacagttttcatcttttatgagtcatcactcatcaataatccccttattatcttttctgatggctcttgtatatcaggaatagtaggtcatgaatttatatactgctgtaatagttggaaataaataatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96381" stop="94855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96190" g_stop="96157" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="115" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="227" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="354" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95490" g_stop="95155" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="692" r_length="338" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E622655" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622655" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96190" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTG--TATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTG</genome_strand>
        <mrna_strand>CTTTTTGAAGGAACTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGTCGTGGAACTGAAATTAGACTGCATCTACGAGATGAAGCAGGTGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGGAAAATTTCTCCATATTTTGTTAACTAATGGGTACATGTCACAGTTTTCATCTTTTATGAGTCATCACTCATCAATAATCCCCTTATTATCTTTTCTGATGGCTCTTGTATATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAGTTGGAAATAAATAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359193" ref_strand="+" ref_description="SGN-E359193 [cLHT-11-H1]">
      <seq>tcaactctctctactgtaacaaggacatatctttgagggagctgatttccaatgcttctgatgcactggacaaaattaagttccttgcactcactgacaaagaggttcttggtgatggtgataatactaaacttgagattcacattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatatggaacttcaacttttgtcgagaagatgcagacaagtgatgaccttaacctgattggacaatatggtgttgggttttactctgtgtatcttgaggctgactatgttgaagtcatcagcatgcacaatgacgacatacaatatgtctgggaatcaaatgcagatggggcatttgccatttctgaagatacatggaatgaacctgttggccgaggaactgaaattagactgcatctaatagatgaagcacgggaatatttggatgagctcaaactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96518" stop="95053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96218" g_stop="96157" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="143" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="255" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="382" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95490" g_stop="95353" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="520" r_length="138" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E359193" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96218" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAA</genome_strand>
        <mrna_strand>TCAACTCTCTCTACTGTAACAAGGACATATCTTTGAGGGAGCTGATTTCCAATGCTTCTGAT...............................................................................GCACTGGACAAAATTAAGTTCCTTGCACTCACTGACAAAGAGGTTCTTGGTGATGGTGATAATACTAAACTTGAGATTCAC.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATATGGAACTTCAA..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGATGACCTTAACCTGATTGGACAATATGGTGTTGGGTTTTACTCTGTGTATCTTGAGGCTGACTATGTTGAAGTCATCAGCATGCACAATGACGACATACA....................................................................................ATATGTCTGGGAATCAAATGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTGTTGGCCGAGGAACTGAAATTAGACTGCATCTAATAGATGAAGCACGGGAATATTTGGATGAGCTCAAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331932" ref_strand="+" ref_description="SGN-E331932 [cTOD-16-A10]">
      <seq>aacactctactttgaacgctgcttgtaaaatcatcggccggcgacctctaaagttgaaattccggtgacggagacaatgaggaagtggaagatcccgttcgtcctgtttctgttatgcctgatttaccttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaagagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcgtcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttccaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacnatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgacnaacaatatgtctgggaaatcaaggcagatggggcatttgccatttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97460" stop="95146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97160" g_stop="97018" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="264" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="418" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="499" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="611" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="738" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95490" g_stop="95446" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="783" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E331932" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97160" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGA</genome_strand>
        <mrna_strand>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACNATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACNAACA....................................................................................ATATGTCTGGGAAATCAAGGCAGATGGGGCATTTGCCATTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402657" ref_strand="+" ref_description="SGN-E402657 [PPC-8-G22]">
      <seq>attatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattcttttcattcgcgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggcgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatggggcatttgccatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97431" stop="95148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97131" g_stop="97018" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="235" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="389" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="582" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="709" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95490" g_stop="95448" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="752" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E402657" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97131" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCT</genome_strand>
        <mrna_strand>ATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTTCATTCGCGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGCGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATGGGGCATTTGCCATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452442" ref_strand="+" ref_description="SGN-E452442 [cSTS-16-H18]">
      <seq>gcttgtaaaattatcggccggcgagctctaaagttgagattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggccaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattctttccattcgtgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgtcgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgataaacaatatgtctgggaatcaaaggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97440" stop="95258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97140" g_stop="97018" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="244" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="398" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="479" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="591" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="718" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95490" g_stop="95465" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="744" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E452442" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97140" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATG</genome_strand>
        <mrna_strand>GCTTGTAAAATTATCGGCCGGCGAGCTCTAAAGTTGAGATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCCAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTCGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGATAAACA....................................................................................ATATGTCTGGGAATCAAAGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233109" ref_strand="+" ref_description="SGN-E233109 [cLED-6-J20]">
      <seq>ccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaagagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcgtcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttccaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgactaacaatatgtctgggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96780" stop="95260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96480" g_stop="96401" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="234" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="315" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="427" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="554" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95490" g_stop="95476" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="569" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E233109" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96480" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATC</genome_strand>
        <mrna_strand>CCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACTAACA....................................................................................ATATGTCTGGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401998" ref_strand="+" ref_description="SGN-E401998 [PPC-5-P16]">
      <seq>tgaacgctgcttataaaattatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattcttttcattcgcgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacnagtggtgaccttaacctgattggacaatttggcgtncggttttactctgggtatcttgtggctgactatgttgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97448" stop="95302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97148" g_stop="97018" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="252" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="406" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="487" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="599" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95602" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="699" r_length="100" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E401998" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97148" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGT</genome_strand>
        <mrna_strand>TGAACGCTGCTTATAAAATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTTCATTCGCGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACNAGTGGTGACCTTAACCTGATTGGACAATTTGGCGTNCGGTTTTACTCTGGGTATCTTGTGGCTGACTATGTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582751" ref_strand="+" ref_description="SGN-E582751 [8384]">
      <seq>attatcggccggcgagctctaaagttgagattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggccaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataacagaaaagaaaattctttccattcgtgacagaggtgttcggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaaatctggaaacttcagcttttgtcgagaagatgcagacagtggtgaccttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97431" stop="95362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97131" g_stop="97018" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="235" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="389" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="470" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="586" r_length="116" r_score="0.902"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95667" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="620" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E582751" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97131" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAA-AGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTT-GGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCT-AAATCTGG-AACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTT</genome_strand>
        <mrna_strand>ATTATCGGCCGGCGAGCTCTAAAGTTGAGATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCCAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAACAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTCGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAAATCTGGAAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGAC-AGTGGTGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443744" ref_strand="+" ref_description="SGN-E443744 [cSTA-39-L13]">
      <seq>gaactagtctgagtttttttttttccagatcaaggtcgaaagatacaggcaaatgcacaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccacgctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattcttttcattcgcgacagaggtgttggaatgactaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96841" stop="95482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="155" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="309" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="390" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="502" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="24" polyA_stop="13"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E443744" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG</genome_strand>
        <mrna_strand>GTCGAAAGATACAGGCAAATGCACAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCACGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTTCATTCGCGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478288" ref_strand="+" ref_description="SGN-E478288 [cSTD-4-A21]">
      <seq>gctgcttgtaaaattatcggccggcgagctctaaagttgagattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggccaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattctttccattcgtgacagaggtgttggaatgactaaggaggatctaagaaagaatttggggaccatagctaaatctggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97443" stop="95489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97143" g_stop="97018" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="247" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="401" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="482" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95789" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="589" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E478288" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97143" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAAC</genome_strand>
        <mrna_strand>GCTGCTTGTAAAATTATCGGCCGGCGAGCTCTAAAGTTGAGATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCCAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGGACCATAGCTAAATCTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576717" ref_strand="+" ref_description="SGN-E576717 [59979]">
      <seq>gctgcttgtaaaattatcggccggcgagctctaaagttgagattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggccaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattctttccattcgtgacagaggtgttggaatgactaaggaggatctaagaaagaatttggggaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97443" stop="95504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97143" g_stop="97018" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="247" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="401" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="482" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95804" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="575" r_length="93" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E576717" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97143" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTT-GGGAACCAT</genome_strand>
        <mrna_strand>GCTGCTTGTAAAATTATCGGCCGGCGAGCTCTAAAGTTGAGATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCCAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTGGAATGACTAAGGAGGATCTAAGAAAGAATTTGGGGAACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482328" ref_strand="+" ref_description="SGN-E482328 [cSTD-21-J4]">
      <seq>aattatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaaggtacaggcaaatgcagaagctgattccgatgcaccagtagatccaccaaaggttgaggaaaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaagttccttgcactcactgacaaagaaggtctcggtgaaggtgataacactaagcttgagattcagattaaactccataaagaaaagaaaattctttccattctcgacagaagtgttggaatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97432" stop="95534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97132" g_stop="97018" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="236" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="390" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="471" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95835" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="532" r_length="61" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E482328" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97132" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCA</genome_strand>
        <mrna_strand>AATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGTACAGGCAAATGCAGAAGCTGATTCCGATGCACCAGTAGATCCACCAAAGGTTGAGGAAAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAAGTTCCTTGCACTCACTGACAAAGAAGGTCTCGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCCATAAAGAAAAGAAAATTCTTTCCATTCTCGACAGAAGTGTTGGAATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404512" ref_strand="+" ref_description="SGN-E404512 [PPC-14-C22]">
      <seq>agtgcttgtaaattatcggccggcgagctctaaagttgagattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaagttgaagagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggccaaaaaggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaagtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgaaggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaagaagttcttggtgaaggtgataacactaagcttgagattcagattaaactcgataaagaaaagaaaattctttccattcgtgacagaggtgttggaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97441" stop="95537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97143" g_stop="97018" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="246" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="400" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="481" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95836" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="541" r_length="60" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E404512" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97143" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACC</genome_strand>
        <mrna_strand>AGTGCTTGTAA-ATTATCGGCCGGCGAGCTCTAAAGTTGAGATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAAGTTGAAGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCCAAAAA..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAAGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAAGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAAGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAGGTGTTGGAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574130" ref_strand="+" ref_description="SGN-E574130 [33548]">
      <seq>ggccggcgagctctaaagttgagattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggccaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaagttcttggtgaaggtgataacactaagctttgagattcagattanacctcgataaagaaaagaaaattctttccattcgtgacagaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97425" stop="95547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97125" g_stop="97018" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="229" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="383" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="465" r_length="82" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95847" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="516" r_length="51" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E574130" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97125" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGC-TTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAA-CTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAG-AGGTG</genome_strand>
        <mrna_strand>GGCCGGCGAGCTCTAAAGTTGAGATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCCAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAAGTTCTTGGTGAAGGTGATAACACTAAGCTTTGAGATTCAG.....................................................................................................ATTANACCTCGATAAAGAAAAGAAAATTCTTTCCATTCGTGACAGAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242726" ref_strand="+" ref_description="SGN-E242726 [cLED-31-K15]">
      <seq>ccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaagagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagttggagttccaggctgacgtctctcgtcttatggacatccttatcaactctctctacaggaacaaggacatcttttcgagggagctgatttccaatgcttctgatgcactggacaacattaggttccttgcactcactgacaaagaggttcttggcgagggtgataattctatgctagacattcacattacccttgattaagaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="96780" stop="95693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96480" g_stop="96401" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="234" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="315" r_length="81" r_score="0.901"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95895" g_stop="95874" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="337" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E242726" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96480" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGA</genome_strand>
        <mrna_strand>CCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTGGAGTTCCAGGCTGACGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGGAACAAGGACATCTTTTCGAGGGAGCTGATTTCCAATGCTTCTGAT...............................................................................GCACTGGACAACATTAGGTTCCTTGCACTCACTGACAAAGAGGTTCTTGGCGAGGGTGATAATTCTATGCTAGACATTCAC.....................................................................................................ATTACCCTTGATTAAGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443981" ref_strand="+" ref_description="SGN-E443981 [cSTA-40-P18]">
      <seq>ctctactttgaacgctgcttgtaaaattatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaaggtacaggcaaatgcagaagctgattccgatgcaccagtagatccaccaaaggttgaggaaaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaggttccttgcactcactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97456" stop="95742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97156" g_stop="97018" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="260" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="414" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="96042" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="450" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E443981" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97156" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="96042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGAC</genome_strand>
        <mrna_strand>CTCTACTTTGAACGCTGCTTGTAAAATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGTACAGGCAAATGCAGAAGCTGATTCCGATGCACCAGTAGATCCACCAAAGGTTGAGGAAAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436875" ref_strand="+" ref_description="SGN-E436875 [cSTA-1-O8]">
      <seq>aattatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgtactggacaagattaggttccttgcactcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97432" stop="95743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97132" g_stop="97018" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="236" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="390" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="96043" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="425" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E436875" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97132" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="96043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGA</genome_strand>
        <mrna_strand>AATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GTACTGGACAAGATTAGGTTCCTTGCACTCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404189" ref_strand="+" ref_description="SGN-E404189 [PPC-12-N14]">
      <seq>attatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaaggtacaggcaaatgcagaagctgattccgatgcaccagtagatccaccaaaggttgaggaaaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagattaagttccttgcactcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97431" stop="95744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97131" g_stop="97018" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="235" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="389" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="96044" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="423" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E404189" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97131" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="96044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTG</genome_strand>
        <mrna_strand>ATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGTACAGGCAAATGCAGAAGCTGATTCCGATGCACCAGTAGATCCACCAAAGGTTGAGGAAAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAAGTTCCTTGCACTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439310" ref_strand="+" ref_description="SGN-E439310 [cSTA-11-N7]">
      <seq>tataaaattatcggccggcgagctctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactggacaagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97437" stop="95762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97137" g_stop="97018" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="241" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="395" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="96062" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="411" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E439310" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97137" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="96062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTA</genome_strand>
        <mrna_strand>TATAAAATTATCGGCCGGCGAGCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGGACAAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457439" ref_strand="+" ref_description="SGN-E457439 [cPRO-2-P17]">
      <seq>ctaaagttgaaattccggtgacggagacaatgaggaagtggacgatcccgttcgtcctgtttctgttgtgcctgatttttcttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaaaagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaaagttgagttccaggctgaggtctctcggcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttcaaatgcttctgatgcactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97413" stop="95854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97113" g_stop="97018" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="217" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="371" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="96071" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="378" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E457439" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97113" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="96071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGG</genome_strand>
        <mrna_strand>CTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGACGATCCCGTTCGTCCTGTTTCTGTTGTGCCTGATTTTTCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAAAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAAGTTGAGTTCCAGGCTGAGGTCTCTCGGCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCAAATGCTTCTGAT...............................................................................GCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336901" ref_strand="+" ref_description="SGN-E336901 [cTOE-5-N21]">
      <seq>aaaatcatcggccggcgacctctaaagttgaaattccggtgacggagacaatgaggaagtggaagatcccgttcgtcctgtttctggtatgcctgatttaccttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaagttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaagagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcgtcttatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-ZLN23/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97434" stop="95925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97134" g_stop="97018" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="238" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96225" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="324" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-E336901" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97134" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACA</genome_strand>
        <mrna_strand>AAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGGTATGCCTGATTTACCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAAGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>243</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8023" PGL_stop="5006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7992" e_stop="7765"/>
            <exon e_start="7638" e_stop="7555"/>
            <exon e_start="7255" e_stop="7204"/>
            <exon e_start="5608" e_stop="5452"/>
            <exon e_start="5301" e_stop="5006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7992" e_stop="7765" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7638" e_stop="7555" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7255" e_stop="7204" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5608" e_stop="5452" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5301" e_stop="5006" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7992" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371646" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7980" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7980" stop="7765"/>
              <exon start="7638" stop="7560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7972" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7963" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7961" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7961" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7961" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7914" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7778" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7620" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430692" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</gDNA_template>
            <first_frame> F  S  D  S  D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F  Q  Y  Q  L  C  P  I  A  R  C  C  K  *  N  *  A  P  V  C  I  A  F  *  K  </first_frame>
            <second_frame>  F  L  I  L  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D  F  N  T  S  F  V  Q  L  L  D  V  V  N  E  I  E  H  L  C  V  L  H  F  K  K </second_frame>
            <third_frame>   F  *  F  *  *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  S  I  P  A  L  S  N  C  *  M  L  *  M  K  L  S  T  C  V  Y  C  I  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7944" stop="7765"/>
                    <exon start="7638" stop="7555"/>
                    <exon start="7255" stop="7204"/>
                    <exon start="5608" stop="5452"/>
                    <exon start="5301" stop="5280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7980" e_stop="7765"/>
            <exon e_start="7638" e_stop="7555"/>
            <exon e_start="7255" e_stop="7204"/>
            <exon e_start="5608" e_stop="5494"/>
            <exon e_start="5246" e_stop="5055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7980" e_stop="7765" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7638" e_stop="7555" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7255" e_stop="7204" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="5608" e_stop="5494" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5493" i_stop="5247" i_length="247"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="5246" e_stop="5055" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7980" stop="7765"/>
              <exon start="7638" stop="7560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7972" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5494"/>
              <exon start="5246" stop="5055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7961" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7961" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAAC : TTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCT</gDNA_template>
            <first_frame> D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T :   C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D  F  N  T  S  F  V  Q  L   </first_frame>
            <second_frame>  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q   : L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  S  I  P  A  L  S  N  C  </second_frame>
            <third_frame>   *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  :  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F  Q  Y  Q  L  C  P  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7944" stop="7765"/>
                    <exon start="7638" stop="7555"/>
                    <exon start="7255" stop="7204"/>
                    <exon start="5608" stop="5494"/>
                    <exon start="5246" stop="5210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCLLSRRPVILT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7977" e_stop="7555"/>
            <exon e_start="7255" e_stop="7086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="0.920"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="7977" e_stop="7555" e_length="423"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="7255" e_stop="7086" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7892" stop="7555"/>
              <exon start="7255" stop="7086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7892" stop="7555"/>
              <exon start="7255" stop="7136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAA</gDNA_template>
            <first_frame> D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  V  L  F  F  L  K  F  S  F  C  V  F  L  H  D  Y  C  L  I  S  V  D  L  I  W  V  F  F  I  F  F  L  F  L  G  K  L  *  C  T  W  Q  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A  R  K  Y  F  L  N  *  T  F  H  S  V  V  S  L  Y  V  R  S  D  K  Y  K  *  A  *  R  Y  I  V  M  S  T  S  V  L  K  I  H   </first_frame>
            <second_frame>  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R  F  F  S  F  S  S  S  L  F  V  F  F  S  M  I  I  V  *  F  Q  L  I  S  Y  G  F  F  L  F  F  F  Y  F  W  G  N  C  D  V  L  G  R  *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  V  S  I  S  *  T  R  L  S  I  L  L  F  L  Y  M  F  D  P  I  S  T  N  E  P  R  G  I  L  L  C  P  Q  V  Y  L  K  Y  I  </second_frame>
            <third_frame>   *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H  G  S  F  L  S  Q  V  L  F  L  C  F  S  P  *  L  L  F  N  F  S  *  S  H  M  G  F  F  Y  F  F  F  I  F  G  E  I  V  M  Y  L  A  G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S  *  V  F  L  K  L  D  F  P  F  C  C  F  F  I  C  S  I  R  *  V  Q  M  S  L  E  V  Y  C  Y  V  H  K  C  T  *  N  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7944" stop="7651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVLFFLKFSFCVFLHDYCLISVDLIWVFFIFFLFLGKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7922" stop="7710"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHLHFPALSLHLSAHLLSFLLFLLLFSLRNFIKHVVGEIRTHVLKLWILIKTRFFSFSSSLFVFFSMIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="8023" e_stop="7555"/>
            <exon e_start="7255" e_stop="7204"/>
            <exon e_start="5608" e_stop="5452"/>
            <exon e_start="5301" e_stop="5079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="0.994"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="8023" e_stop="7555" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7255" e_stop="7204" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="5608" e_stop="5452" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="5301" e_stop="5079" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8023" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7977" stop="7767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7620" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430692" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTT</gDNA_template>
            <first_frame> N  S  W  C  Q  F  Q  N  F  L  F  F  *  F  *  *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H  G  S  F  L  S  Q  V  L  F  L  C  F  S  P  *  L  L  F  N  F  S  *  S  H  M  G  F  F  Y  F  F  F  I  F  G  E  I  V  M  Y  L  A  G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  </first_frame>
            <second_frame>  T  V  G  V  S  F  R  I  S  C  F  S  D  S  D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  V  L  F  F  L  K  F  S  F  C  V  F  L  H  D  Y  C  L  I  S  V  D  L  I  W  V  F  F  I  F  F  L  F  L  G  K  L  *  C  T  W  Q  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F </second_frame>
            <third_frame>   Q  L  V  S  V  S  E  F  L  V  F  L  I  L  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R  F  F  S  F  S  S  S  L  F  V  F  F  S  M  I  I  V  *  F  Q  L  I  S  Y  G  F  F  L  F  F  F  Y  F  W  G  N  C  D  V  L  G  R  *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7650" stop="7555"/>
                    <exon start="7255" stop="7204"/>
                    <exon start="5608" stop="5452"/>
                    <exon start="5301" stop="5280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTWQVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7944" stop="7651"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVLFFLKFSFCVFLHDYCLISVDLIWVFFIFFLFLGKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5030" PGL_stop="5318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5030" e_stop="5318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="5030" e_stop="5318" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5030" stop="5318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCTCAATTTCATTTACAACATCTAGCAATTGGACAAAGCTGGTATTGAAATCATGTATTGCTCAACTTGTTAAAGATTACATGTAAGAACAGAAGGTGAAAGGAATATGTGAAAACTGAGAAAGGCAGAGAGAGGGGATGAACATAAATGAATTTTACACAATTTTGTGTCAATATATTCAGGTCAAAATGACAGGTCTTCTAGACAATAAACAAGTTGTGGCATCCATGCTGAGTATTCTTCCATATCTAATCATCGTCCTTGAATTCCCTGTCGAGAAGAAGATG</gDNA_template>
            <first_frame> V  L  N  F  I  Y  N  I  *  Q  L  D  K  A  G  I  E  I  M  Y  C  S  T  C  *  R  L  H  V  R  T  E  G  E  R  N  M  *  K  L  R  K  A  E  R  G  D  E  H  K  *  I  L  H  N  F  V  S  I  Y  S  G  Q  N  D  R  S  S  R  Q  *  T  S  C  G  I  H  A  E  Y  S  S  I  S  N  H  R  P  *  I  P  C  R  E  E  D  </first_frame>
            <second_frame>  C  S  I  S  F  T  T  S  S  N  W  T  K  L  V  L  K  S  C  I  A  Q  L  V  K  D  Y  M  *  E  Q  K  V  K  G  I  C  E  N  *  E  R  Q  R  E  G  M  N  I  N  E  F  Y  T  I  L  C  Q  Y  I  Q  V  K  M  T  G  L  L  D  N  K  Q  V  V  A  S  M  L  S  I  L  P  Y  L  I  I  V  L  E  F  P  V  E  K  K  M </second_frame>
            <third_frame>   A  Q  F  H  L  Q  H  L  A  I  G  Q  S  W  Y  *  N  H  V  L  L  N  L  L  K  I  T  C  K  N  R  R  *  K  E  Y  V  K  T  E  K  G  R  E  R  G  *  T  *  M  N  F  T  Q  F  C  V  N  I  F  R  S  K  *  Q  V  F  *  T  I  N  K  L  W  H  P  C  *  V  F  F  H  I  *  S  S  S  L  N  S  L  S  R  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178J08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11697" PGL_stop="8614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11697" e_stop="11619"/>
            <exon e_start="11527" e_stop="11394"/>
            <exon e_start="10983" e_stop="10911"/>
            <exon e_start="10343" e_stop="10261"/>
            <exon e_start="9526" e_stop="9488"/>
            <exon e_start="9371" e_stop="9301"/>
            <exon e_start="9233" e_stop="9119"/>
            <exon e_start="9042" e_stop="8614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11697" e_stop="11619" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11527" e_stop="11394" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10983" e_stop="10911" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10343" e_stop="10261" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9526" e_stop="9488" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9371" e_stop="9301" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9233" e_stop="9119" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="9042" e_stop="8614" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11697" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11677" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11677" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11675" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11672" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11672" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11658" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11657" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11638" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11488" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10956" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10947" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8995" stop="8614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTCTTTTCAATTTCAGAGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA : AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> L  T  L  F  N  F  R  E  T  A  M  E  S  A  L  L  S  A  S  R  F  T  T  A  L  H   : K  A  E  R  E  V  V  G  G  P  V  A  V  R  K  L  Q  S  S  F  Y  G  K  E  I  N  S  H  T  L  F  T  K  N  F  K  K  I  N  L  T  I  T  S  V  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </first_frame>
            <second_frame>  S  L  F  S  I  S  E  K  L  Q  W  R  A  L  F  S  L  L  P  A  S  L  L  L  C  T  :  K  Q  K  E  K  *  *  V  D  L  W  L  *  G  N  Y  R  A  H  S  M  A  K  R  L  I  V  I  L  F  S  L  K  T  S  K  K  S  I  S  L  S  P  Q  * :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </second_frame>
            <third_frame>   H  S  F  Q  F  Q  R  N  C  N  G  E  R  S  S  L  C  F  P  L  H  Y  C  S  A  Q :   S  R  K  R  S  S  R  W  T  C  G  C  E  E  I  T  E  L  I  L  W  Q  R  D  *  *  S  Y  S  F  H  *  K  L  Q  K  N  Q  S  H  Y  H  L  S   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11697" stop="11619"/>
                    <exon start="11527" stop="11394"/>
                    <exon start="10983" stop="10911"/>
                    <exon start="10343" stop="10261"/>
                    <exon start="9526" stop="9488"/>
                    <exon start="9371" stop="9301"/>
                    <exon start="9233" stop="9119"/>
                    <exon start="9042" stop="8974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLFNFRETAMESALLSASRFTTALHKAEREVVGGPVAVRKLQSSFYGKEINSHTLFTKNFKKINLTITSVMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11660" e_stop="11394"/>
            <exon e_start="10983" e_stop="10911"/>
            <exon e_start="10343" e_stop="10261"/>
            <exon e_start="9526" e_stop="9488"/>
            <exon e_start="9371" e_stop="9301"/>
            <exon e_start="9233" e_stop="9119"/>
            <exon e_start="9042" e_stop="8614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="0.986"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="11660" e_stop="11394" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10983" e_stop="10911" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10343" e_stop="10261" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9526" e_stop="9488" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="9371" e_stop="9301" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9233" e_stop="9119" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.941">
            <gDNA_exon_boundary e_start="9042" e_stop="8614" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11660" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="9020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11659" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11488" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10956" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10947" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8995" stop="8614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> A  L  F  S  L  L  P  A  S  L  L  L  C  T  V  E  Q  N  F  C  K  I  K  L  C  *  A  Y  L  K  I  F  L  Y  C  K  L  I  F  V  L  Y  L  S  E  A  E  R  E  V  V  G  G  P  V  A  V  R  K  L  Q  S  S  F  Y  G  K  E  I  N  S  H  T  L  F  T  K  N  F  K  K  I  N  L  T  I  T  S  V  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </first_frame>
            <second_frame>  R  S  S  L  C  F  P  L  H  Y  C  S  A  Q  L  S  K  I  S  V  K  L  N  F  V  K  L  I  L  K  F  S  C  I  V  N  *  F  L  F  C  I  Y  Q  K  Q  K  E  K  *  *  V  D  L  W  L  *  G  N  Y  R  A  H  S  M  A  K  R  L  I  V  I  L  F  S  L  K  T  S  K  K  S  I  S  L  S  P  Q  * :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </second_frame>
            <third_frame>   A  L  L  S  A  S  R  F  T  T  A  L  H  S  *  A  K  F  L  *  N  *  T  L  L  S  L  S  *  N  F  L  V  L  *  T  N  F  C  F  V  F  I  R  S  R  K  R  S  S  R  W  T  C  G  C  E  E  I  T  E  L  I  L  W  Q  R  D  *  *  S  Y  S  F  H  *  K  L  Q  K  N  Q  S  H  Y  H  L  S   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11582" stop="11394"/>
                    <exon start="10983" stop="10911"/>
                    <exon start="10343" stop="10261"/>
                    <exon start="9526" stop="9488"/>
                    <exon start="9371" stop="9301"/>
                    <exon start="9233" stop="9119"/>
                    <exon start="9042" stop="8974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLKIFLYCKLIFVLYLSEAEREVVGGPVAVRKLQSSFYGKEINSHTLFTKNFKKINLTITSVMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11220" e_stop="11217"/>
            <exon e_start="10983" e_stop="10911"/>
            <exon e_start="10343" e_stop="10261"/>
            <exon e_start="9526" e_stop="9488"/>
            <exon e_start="9371" e_stop="9301"/>
            <exon e_start="9233" e_stop="9119"/>
            <exon e_start="9042" e_stop="8614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.991" e_score="0.750"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="11220" e_stop="11217" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11216" i_stop="10984" i_length="233"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="10983" e_stop="10911" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10343" e_stop="10261" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9526" e_stop="9488" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9371" e_stop="9301" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9233" e_stop="9119" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.941">
            <gDNA_exon_boundary e_start="9042" e_stop="8614" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11220" stop="11217"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10956" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10947" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8995" stop="8614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> R   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </first_frame>
            <second_frame>  E  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </second_frame>
            <third_frame>   R :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11219" stop="11217"/>
                    <exon start="10983" stop="10911"/>
                    <exon start="10343" stop="10261"/>
                    <exon start="9526" stop="9488"/>
                    <exon start="9371" stop="9301"/>
                    <exon start="9233" stop="9119"/>
                    <exon start="9042" stop="8974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9668" e_stop="9488"/>
            <exon e_start="9371" e_stop="9301"/>
            <exon e_start="9233" e_stop="9119"/>
            <exon e_start="9042" e_stop="8614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="9668" e_stop="9488" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9371" e_stop="9301" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9233" e_stop="9119" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="9042" e_stop="8614" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9668" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9668" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9228" stop="9119"/>
              <exon start="9042" stop="8669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8995" stop="8614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> G  A  S  S  I  A  P  D  L  V  T  D  H  L  F  I  L  L  I  I  L  I  S  L  I  S  F  I  H  L  A  S  I  R  P  A  F  L  I  D  S  H  R  F  S  L  A  D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </first_frame>
            <second_frame>  E  L  L  L  L  H  R  I  *  *  Q  I  I  C  S  F  C  L  L  S  *  F  P  *  S  R  S  F  I  *  H  L  S  G  R  H  S  L  L  I  H  I  V  F  R  L  Q  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </second_frame>
            <third_frame>   S  F  F  Y  C  T  G  S  S  N  R  S  S  V  H  S  A  Y  Y  L  N  F  L  D  L  V  H  S  F  S  I  Y  Q  A  G  I  P  Y  *  F  T  S  F  F  A  C  R  Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9577" stop="9488"/>
                    <exon start="9371" stop="9301"/>
                    <exon start="9233" stop="9119"/>
                    <exon start="9042" stop="8974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSGRHSLLIHIVFRLQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14971" PGL_stop="17984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14971" e_stop="15154"/>
            <exon e_start="15750" e_stop="15790"/>
            <exon e_start="15894" e_stop="15992"/>
            <exon e_start="16074" e_stop="16130"/>
            <exon e_start="16252" e_stop="16315"/>
            <exon e_start="16412" e_stop="16618"/>
            <exon e_start="17589" e_stop="17984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.841" acc_prob="0.941" e_score="0.861"/>
          <exon-intron don_prob="0.638" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.981" e_score="0.980"/>
          <exon-intron don_prob="0.934" acc_prob="0.946" e_score="0.982"/>
          <exon-intron don_prob="0.989" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.990" e_score="0.971"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.861">
            <gDNA_exon_boundary e_start="14971" e_stop="15154" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.841" acc_prob="0.941">
            <gDNA_intron_boundary i_start="15155" i_stop="15749" i_length="595"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15750" e_stop="15790" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.638" acc_prob="0.980">
            <gDNA_intron_boundary i_start="15791" i_stop="15893" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="15894" e_stop="15992" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.981">
            <gDNA_intron_boundary i_start="15993" i_stop="16073" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="16074" e_stop="16130" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.946">
            <gDNA_intron_boundary i_start="16131" i_stop="16251" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16252" e_stop="16315" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.747">
            <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="16412" e_stop="16618" e_length="207"/>
          </exon>
          <intron i_serial="6" don_prob="0.633" acc_prob="0.990">
            <gDNA_intron_boundary i_start="16619" i_stop="17588" i_length="970"/>
          </intron>
          <exon e_serial="7" e_score="0.919">
            <gDNA_exon_boundary e_start="17589" e_stop="17984" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14971" stop="15154"/>
              <exon start="15750" stop="15790"/>
              <exon start="15894" stop="15992"/>
              <exon start="16074" stop="16130"/>
              <exon start="16252" stop="16315"/>
              <exon start="16412" stop="16618"/>
              <exon start="17589" stop="17707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14975" stop="15154"/>
              <exon start="15750" stop="15790"/>
              <exon start="15894" stop="15992"/>
              <exon start="16074" stop="16130"/>
              <exon start="16252" stop="16315"/>
              <exon start="16412" stop="16618"/>
              <exon start="17589" stop="17667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14975" stop="15154"/>
              <exon start="15750" stop="15790"/>
              <exon start="15894" stop="15992"/>
              <exon start="16074" stop="16130"/>
              <exon start="16252" stop="16315"/>
              <exon start="16412" stop="16618"/>
              <exon start="17589" stop="17639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14982" stop="15154"/>
              <exon start="15750" stop="15790"/>
              <exon start="15894" stop="15992"/>
              <exon start="16074" stop="16130"/>
              <exon start="16252" stop="16315"/>
              <exon start="16412" stop="16440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14997" stop="15154"/>
              <exon start="15750" stop="15790"/>
              <exon start="15894" stop="15992"/>
              <exon start="16074" stop="16130"/>
              <exon start="16252" stop="16315"/>
              <exon start="16412" stop="16596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16315"/>
              <exon start="16412" stop="16618"/>
              <exon start="17589" stop="17984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCCCCGTAAATCTCTTTCACACACCTCTTCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCTAAAAAACTGTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAG : GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT : GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG : GATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG : GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG : GGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG : ACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTGAGACAGCCTTGGAG</gDNA_template>
            <first_frame> H  P  R  K  S  L  S  H  T  S  S  R  Q  H  R  N  G  S  P  E  N  C  G  G  A  T  N  F  *  K  T  V  Y  L  P  A  L  L  *  L  T  A  N  S  P  D  F  L  V  S  S  P  V  F  A  L  D  *  S  A  K   : G  I  Q  D  D  W  I  F  Y  H  Q  S  A  C  :  D  G  F  W  L  C  L  S  S  L  *  M  L  Q  N  C  G  D  E  Q  T  R  Y  S  A  T  P  L  L  V  P  I  L  :  D  L  S  C  Y  V  D  S  L  *  E  V  R  *  C  F  Y  F  M  :  G  S  N  V  Q  *  S  *  A  G  I  R  H  L  L  V  V  P  Q  N  *   : G  N  Y  I  R  L  *  C  L  F  *  T  C  D  I  K  A  *  T  *  D  *  *  K  F  V  G  V  E  D  Q  S  R  R  Y  V  L  F  I  L  A  E  S  C  *  L  W  P  D  E  G  F  R  H  F  A  V  H  C  F  A  V  K  S  T  S  P  H  S   : D  T  Q  A  K  Q  *  R  S  S  T  H  S  I  T  K  S  Q  V  I  C  F  S  N  T  S  T  G  *  R  T  S  T  P  C  F  F  *  I  F  K  R  G  *  S  R  F  S  R  R  G  R  I  L  Q  R  S  S  T  C  F  H  C  R  C  K  C  T  K  N  N  S  L  Q  I  T  G  F  N  C  S  C  F  S  E  H  T  K  S  I  S  L  Q  I  P  C  *  N  H  K  T  F  H  V  C  *  N  S  S  G  A  D  *  F  C  A  S  L  S  H  *  K  C  *  P  S  C  *  D  S  L  G  </first_frame>
            <second_frame>  T  P  V  N  L  F  H  T  P  L  L  A  N  I  A  T  V  R  R  R  T  A  V  V  P  P  T  S  K  K  L  F  T  C  P  L  C  S  N  *  R  P  I  R  R  I  F  *  S  V  R  R  C  L  L  W  I  D  Q  Q  K  :  E  F  K  M  I  G  S  F  I  T  R  V  L  V :   M  V  F  G  Y  A  Y  P  A  Y  E  C  F  K  T  V  E  M  N  K  P  D  I  Q  Q  L  R  F  W  C  Q  Y  W :   I  L  V  A  M  L  T  V  C  E  R  F  G  D  A  F  I  S  W :   V  P  M  Y  S  E  A  K  L  A  F  V  I  Y  L  W  C  P  K  T  K  :  G  T  T  Y  V  Y  D  A  F  F  K  P  V  I  L  R  H  E  P  E  I  D  K  S  L  L  E  L  R  T  R  A  G  D  M  F  F  L  Y  W  Q  K  A  A  S  Y  G  Q  T  R  V  F  D  I  L  Q  Y  I  A  S  Q  S  N  P  P  P  P  T  Q  :  T  H  R  Q  S  S  R  G  R  Q  P  T  A  S  L  N  R  R  S  S  A  S  A  T  Q  V  Q  A  E  E  Q  A  P  R  A  S  S  E  S  S  S  E  D  E  A  D  S  A  E  E  A  G  S  S  K  G  P  P  P  A  S  T  A  A  A  N  A  Q  K  T  T  P  S  K  S  L  V  S  T  V  A  A  S  L  N  T  Q  K  A  S  P  S  K  S  L  A  E  I  T  K  P  S  T  S  V  E  T  R  V  V  Q  I  D  S  V  P  P  S  A  T  E  S  V  N  P  P  A  E  T  A  L  E </second_frame>
            <third_frame>   P  P  *  I  S  F  T  H  L  F  S  P  T  S  Q  R  F  A  G  E  L  R  W  C  H  Q  L  L  K  N  C  L  L  A  R  F  A  L  T  N  G  Q  F  A  G  F  S  S  Q  F  A  G  V  C  F  G  L  I  S  K  R :   N  S  R  *  L  D  L  L  S  P  E  C  L   : *  W  F  L  V  M  L  I  Q  L  M  N  A  S  K  L  W  R  *  T  N  Q  I  F  S  N  S  A  F  G  A  N  I   : G  S  *  L  L  C  *  Q  F  V  R  G  S  V  M  L  L  F  H   : G  F  Q  C  T  V  K  L  S  W  H  S  S  F  T  C  G  A  P  K  L  R :   E  L  H  T  S  M  M  P  F  L  N  L  *  Y  *  G  M  N  L  R  L  I  K  V  C  W  S  *  G  P  E  Q  E  I  C  S  F  Y  T  G  R  K  L  L  A  M  A  R  R  G  F  S  T  F  C  S  T  L  L  R  S  Q  I  H  L  P  P  L  R :   H  T  G  K  A  V  E  V  V  N  P  Q  H  H  *  I  A  G  H  L  L  Q  Q  H  K  Y  R  L  K  N  K  H  P  V  L  L  L  N  L  Q  A  R  M  K  Q  I  Q  Q  K  R  Q  D  P  P  K  V  L  H  L  L  P  L  P  L  Q  M  H  K  K  Q  L  P  P  N  H  W  F  Q  L  *  L  L  L  *  T  H  K  K  H  L  P  P  N  P  L  L  K  S  Q  N  L  P  R  L  L  K  L  E  W  C  R  L  I  L  C  L  P  Q  P  L  K  V  L  T  L  L  L  R  Q  P  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15116" stop="15154"/>
                    <exon start="15750" stop="15790"/>
                    <exon start="15894" stop="15992"/>
                    <exon start="16074" stop="16130"/>
                    <exon start="16252" stop="16315"/>
                    <exon start="16412" stop="16618"/>
                    <exon start="17589" stop="17984"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVRRCLLWIDQQKEFKMIGSFITRVLVMVFGYAYPAYECFKTVEMNKPDIQQLRFWCQYWILVAMLTVCERFGDAFISWVPMYSEAKLAFVIYLWCPKTKGTTYVYDAFFKPVILRHEPEIDKSLLELRTRAGDMFFLYWQKAASYGQTRVFDILQYIASQSNPPPPTQTHRQSSRGRQPTASLNRRSSASATQVQAEEQAPRASSESSSEDEADSAEEAGSSKGPPPASTAAANAQKTTPSKSLVSTVAASLNTQKASPSKSLAEITKPSTSVETRVVQIDSVPPSATESVNPPAETALE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16237" e_stop="16315"/>
            <exon e_start="16412" e_stop="16618"/>
            <exon e_start="17589" e_stop="17984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.747" e_score="0.975"/>
          <exon-intron don_prob="0.633" acc_prob="0.990" e_score="0.966"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="16237" e_stop="16315" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.747">
            <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="16412" e_stop="16618" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.633" acc_prob="0.990">
            <gDNA_intron_boundary i_start="16619" i_stop="17588" i_length="970"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="17589" e_stop="17984" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16237" stop="16315"/>
              <exon start="16412" stop="16618"/>
              <exon start="17589" stop="17970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16290" stop="16315"/>
              <exon start="16412" stop="16618"/>
              <exon start="17589" stop="17984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG : GGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG : ACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTGAGACAGCCTTGGAG</gDNA_template>
            <first_frame> L  F  L  F  K  G  S  N  V  Q  *  S  *  A  G  I  R  H  L  L  V  V  P  Q  N  *   : G  N  Y  I  R  L  *  C  L  F  *  T  C  D  I  K  A  *  T  *  D  *  *  K  F  V  G  V  E  D  Q  S  R  R  Y  V  L  F  I  L  A  E  S  C  *  L  W  P  D  E  G  F  R  H  F  A  V  H  C  F  A  V  K  S  T  S  P  H  S   : D  T  Q  A  K  Q  *  R  S  S  T  H  S  I  T  K  S  Q  V  I  C  F  S  N  T  S  T  G  *  R  T  S  T  P  C  F  F  *  I  F  K  R  G  *  S  R  F  S  R  R  G  R  I  L  Q  R  S  S  T  C  F  H  C  R  C  K  C  T  K  N  N  S  L  Q  I  T  G  F  N  C  S  C  F  S  E  H  T  K  S  I  S  L  Q  I  P  C  *  N  H  K  T  F  H  V  C  *  N  S  S  G  A  D  *  F  C  A  S  L  S  H  *  K  C  *  P  S  C  *  D  S  L  G  </first_frame>
            <second_frame>  F  F  F  S  R  V  P  M  Y  S  E  A  K  L  A  F  V  I  Y  L  W  C  P  K  T  K  :  G  T  T  Y  V  Y  D  A  F  F  K  P  V  I  L  R  H  E  P  E  I  D  K  S  L  L  E  L  R  T  R  A  G  D  M  F  F  L  Y  W  Q  K  A  A  S  Y  G  Q  T  R  V  F  D  I  L  Q  Y  I  A  S  Q  S  N  P  P  P  P  T  Q  :  T  H  R  Q  S  S  R  G  R  Q  P  T  A  S  L  N  R  R  S  S  A  S  A  T  Q  V  Q  A  E  E  Q  A  P  R  A  S  S  E  S  S  S  E  D  E  A  D  S  A  E  E  A  G  S  S  K  G  P  P  P  A  S  T  A  A  A  N  A  Q  K  T  T  P  S  K  S  L  V  S  T  V  A  A  S  L  N  T  Q  K  A  S  P  S  K  S  L  A  E  I  T  K  P  S  T  S  V  E  T  R  V  V  Q  I  D  S  V  P  P  S  A  T  E  S  V  N  P  P  A  E  T  A  L  E </second_frame>
            <third_frame>   F  S  F  Q  G  F  Q  C  T  V  K  L  S  W  H  S  S  F  T  C  G  A  P  K  L  R :   E  L  H  T  S  M  M  P  F  L  N  L  *  Y  *  G  M  N  L  R  L  I  K  V  C  W  S  *  G  P  E  Q  E  I  C  S  F  Y  T  G  R  K  L  L  A  M  A  R  R  G  F  S  T  F  C  S  T  L  L  R  S  Q  I  H  L  P  P  L  R :   H  T  G  K  A  V  E  V  V  N  P  Q  H  H  *  I  A  G  H  L  L  Q  Q  H  K  Y  R  L  K  N  K  H  P  V  L  L  L  N  L  Q  A  R  M  K  Q  I  Q  Q  K  R  Q  D  P  P  K  V  L  H  L  L  P  L  P  L  Q  M  H  K  K  Q  L  P  P  N  H  W  F  Q  L  *  L  L  L  *  T  H  K  K  H  L  P  P  N  P  L  L  K  S  Q  N  L  P  R  L  L  K  L  E  W  C  R  L  I  L  C  L  P  Q  P  L  K  V  L  T  L  L  L  R  Q  P  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16238" stop="16315"/>
                    <exon start="16412" stop="16618"/>
                    <exon start="17589" stop="17984"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFSRVPMYSEAKLAFVIYLWCPKTKGTTYVYDAFFKPVILRHEPEIDKSLLELRTRAGDMFFLYWQKAASYGQTRVFDILQYIASQSNPPPPTQTHRQSSRGRQPTASLNRRSSASATQVQAEEQAPRASSESSSEDEADSAEEAGSSKGPPPASTAAANAQKTTPSKSLVSTVAASLNTQKASPSKSLAEITKPSTSVETRVVQIDSVPPSATESVNPPAETALE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16241" e_stop="16315"/>
            <exon e_start="16412" e_stop="16982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.747" e_score="0.960"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="16241" e_stop="16315" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.747">
            <gDNA_intron_boundary i_start="16316" i_stop="16411" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="16412" e_stop="16982" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16241" stop="16315"/>
              <exon start="16412" stop="16982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG : GGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATT</gDNA_template>
            <first_frame> F  F  S  R  V  P  M  Y  S  E  A  K  L  A  F  V  I  Y  L  W  C  P  K  T  K  :  G  T  T  Y  V  Y  D  A  F  F  K  P  V  I  L  R  H  E  P  E  I  D  K  S  L  L  E  L  R  T  R  A  G  D  M  F  F  L  Y  W  Q  K  A  A  S  Y  G  Q  T  R  V  F  D  I  L  Q  Y  I  A  S  Q  S  N  P  P  P  P  T  Q  V  V  V  K  M  C  F  R  V  Y  M  Q  A  Q  L  F  S  A  F  Q  T  C  S  L  L  N  D  S  L  S  C  L  K  F  E  D  R  I  N  F  R  I  C  M  L  L  N  P  Y  S  C  V  A  M  Q  L  H  K  V  L  L  *  L  S  V  L  I  *  R  L  R  S  D  Y  S  *  E  S  *  Y  I  T  H  A  C  E  A  L  G  F  T  R  *  V  E  S  F  Q  T  *  K  W  G  G  W  G  F  S  V  G  D  S  Q  T  T  D  N  E  L  L  H  </first_frame>
            <second_frame>  S  F  Q  G  F  Q  C  T  V  K  L  S  W  H  S  S  F  T  C  G  A  P  K  L  R :   E  L  H  T  S  M  M  P  F  L  N  L  *  Y  *  G  M  N  L  R  L  I  K  V  C  W  S  *  G  P  E  Q  E  I  C  S  F  Y  T  G  R  K  L  L  A  M  A  R  R  G  F  S  T  F  C  S  T  L  L  R  S  Q  I  H  L  P  P  L  R  L  S  L  R  C  V  S  E  F  I  C  K  L  N  Y  F  Q  H  F  K  H  A  L  Y  *  M  I  V  L  A  V  *  N  L  K  I  V  L  I  L  E  F  A  C  F  *  I  H  T  A  V  L  Q  C  N  S  T  K  S  F  S  N  C  P  C  *  F  E  G  *  G  V  I  I  H  K  S  L  N  I  *  H  M  L  V  K  P  W  G  L  L  D  R  L  N  L  F  R  L  R  N  G  E  V  G  G  S  V  *  V  I  A  R  L  Q  I  M  N  C  C  I </second_frame>
            <third_frame>   L  F  K  G  S  N  V  Q  *  S  *  A  G  I  R  H  L  L  V  V  P  Q  N  *   : G  N  Y  I  R  L  *  C  L  F  *  T  C  D  I  K  A  *  T  *  D  *  *  K  F  V  G  V  E  D  Q  S  R  R  Y  V  L  F  I  L  A  E  S  C  *  L  W  P  D  E  G  F  R  H  F  A  V  H  C  F  A  V  K  S  T  S  P  H  S  G  C  R  *  D  V  F  Q  S  L  Y  A  S  S  I  I  F  S  I  S  N  M  L  F  T  K  *  *  S  *  L  F  E  I  *  R  S  Y  *  F  *  N  L  H  A  F  E  S  I  Q  L  C  C  N  A  T  P  Q  S  P  S  L  I  V  R  A  D  L  K  V  K  E  *  L  F  I  R  V  L  I  Y  N  T  C  L  *  S  L  G  V  Y  *  I  G  *  I  F  S  D  L  E  M  G  R  L  G  V  Q  C  R  *  *  P  D  Y  R  *  *  T  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16241" stop="16315"/>
                    <exon start="16412" stop="16804"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSRVPMYSEAKLAFVIYLWCPKTKGTTYVYDAFFKPVILRHEPEIDKSLLELRTRAGDMFFLYWQKAASYGQTRVFDILQYIASQSNPPPPTQVVVKMCFRVYMQAQLFSAFQTCSLLNDSLSCLKFEDRINFRICMLLNPYSCVAMQLHKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="18017" PGL_stop="18444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18017" e_stop="18444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="18017" e_stop="18444" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18017" stop="18444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18017" stop="18444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</gDNA_template>
            <first_frame> K  D  K  D  L  K  Q  P  L  I  Y  V  I  K  Y  L  T  P  H  G  N  L  N  M  *  F  I  Y  I  G  K  R  I  G  S  S  M  Y  I  W  H  I  L  V  H  S  L  L  L  S  M  I  F  *  H  G  S  K  S  I  R  V  V  E  C  V  G  L  P  D  A  I  T  I  H  Y  *  I  S  K  L  *  Y  L  R  L  C  E  G  G  K  M  I  M  N  L  *  S  *  E  L  S  *  R  I  T  V  H  T  Y  K  H  L  V  L  E  M  A  W  L  M  Y  *  M  V  I  G  M  G  L  G  F  Y  N  C  I  S  S  N  K  L  L   </first_frame>
            <second_frame>  K  T  R  T  S  N  N  P  *  F  M  S  S  S  T  *  P  P  M  V  I  *  I  C  S  L  Y  T  S  E  K  G  L  V  L  Q  C  T  S  G  I  S  *  F  I  H  Y  C  C  P  *  F  F  S  M  A  R  K  V  *  G  S  S  S  V  *  D  C  Q  M  Q  L  P  F  I  I  K  Y  P  N  Y  S  T  Y  V  C  V  K  V  G  K  *  S  *  I  Y  E  V  K  S  Y  L  R  G  S  L  Y  I  H  I  N  I  W  F  L  R  W  L  G  *  C  T  E  W  *  L  E  W  D  W  A  S  I  I  V  S  L  L  I  N  F  *  </second_frame>
            <third_frame>   R  Q  G  P  Q  T  T  L  D  L  C  H  Q  V  L  N  P  P  W  *  F  E  Y  V  V  Y  I  H  R  K  K  D  W  F  F  N  V  H  L  A  Y  L  S  S  F  I  T  V  V  H  D  F  L  A  W  L  E  K  Y  K  G  R  R  V  C  R  I  A  R  C  N  Y  H  S  L  L  N  I  Q  I  I  V  L  T  F  V  *  R  W  E  N  D  H  E  S  M  K  L  R  V  I  L  E  D  H  C  T  Y  I  *  T  S  G  S  *  D  G  L  V  D  V  L  N  G  N  W  N  G  T  G  L  L  *  L  Y  L  F  *  *  T  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18079" stop="18279"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEYVVYIHRKKDWFFNVHLAYLSSFITVVHDFLAWLEKYKGRRVCRIARCNYHSLLNIQIIVLTFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="20155" PGL_stop="19151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20155" e_stop="20103"/>
            <exon e_start="19908" e_stop="19734"/>
            <exon e_start="19444" e_stop="19151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20155" e_stop="20103" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.650">
            <gDNA_intron_boundary i_start="20102" i_stop="19909" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19908" e_stop="19734" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19733" i_stop="19445" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="19444" e_stop="19151" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20155" stop="20103"/>
              <exon start="19908" stop="19734"/>
              <exon start="19444" stop="19151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG : CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT : ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</gDNA_template>
            <first_frame> Y  K  L  I  L  R  S  T  T  G  P  I  D  L  F  L  L  S :   K  Q  G  R  Q  H  E  D  I  T  I  K  H  D  K  S  M  D  S  V  S  A  A  K  K  M  D  D  A  Y  P  S  P  A  H  P  C  S  L  D  S  T  D  S  K  L  S  G  V  H  K  I  V  P  S  H  N  S  :  I  D  D  D  Y  W  L  R  S  E  E  A  V  S  A  T  A  L  W  G  I  E  *  S  L  K  L  S  L  V  T  N  S  I  Y  G  Y  Q  K  I  Y  R  N  K  A  S  Y  K  H  V  N  I  F  *  S  *  K  A  L  H  I  S  S  Q  I  I  V  R  N  N  W  F  Q  G  N  S  Y  N  F  C  V  Q  L  Y  G  S  Q  E  Y  Q  S  Y  D  *  P  M  L  G </first_frame>
            <second_frame>  I  S  L  F  L  E  A  Q  Q  G  R  *  I  C  F  S  *   : A  N  R  V  G  S  M  R  T  *  P  S  N  M  T  S  P  W  I  Q  C  L  L  Q  K  R  W  M  M  L  T  H  P  Q  H  I  L  A  L  *  I  Q  Q  T  Q  S  S  R  V  S  I  K  *  Y  L  L  I  T  V :   *  M  M  I  T  G  C  A  R  R  R  R  L  A  Q  L  L  C  G  A  L  N  N  L  *  N  *  A  W  L  Q  T  P  Y  M  D  T  R  R  Y  T  E  I  R  L  L  I  N  M  *  I  S  F  E  A  K  K  L  Y  I  S  L  A  R  L  *  *  E  T  T  G  F  R  E  T  P  T  T  F  A  Y  N  Y  M  V  H  R  N  I  S  L  M  I  N  Q  C  W   </second_frame>
            <third_frame>   *  A  Y  S  *  K  H  N  R  A  D  R  F  V  S  L  E  :  Q  T  G  *  A  A  *  G  H  N  H  Q  T  *  Q  V  H  G  F  S  V  C  C  K  K  D  G  *  C  L  P  I  P  S  T  S  L  L  F  R  F  N  R  L  K  A  L  G  C  P  *  N  S  T  F  S  *  Q   : Y  R  *  *  L  L  V  A  L  G  G  G  G  *  R  N  C  S  V  G  H  *  I  I  F  K  I  E  P  G  Y  K  L  H  I  W  I  P  E  D  I  Q  K  *  G  F  L  *  T  C  K  Y  L  L  K  L  K  S  F  T  Y  L  *  P  D  Y  S  K  K  Q  L  V  S  G  K  L  L  Q  L  L  R  T  T  I  W  F  T  G  I  S  V  L  *  L  T  N  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20155" stop="20103"/>
                    <exon start="19908" stop="19734"/>
                    <exon start="19444" stop="19376"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILRSTTGPIDLFLLSKQGRQHEDITIKHDKSMDSVSAAKKMDDAYPSPAHPCSLDSTDSKLSGVHKIVPSHNSIDDDYWLRSEEAVSATALWGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33111" PGL_stop="27084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33111" e_stop="32868"/>
            <exon e_start="32713" e_stop="32586"/>
            <exon e_start="31576" e_stop="31468"/>
            <exon e_start="31029" e_stop="30948"/>
            <exon e_start="30877" e_stop="30807"/>
            <exon e_start="30129" e_stop="30088"/>
            <exon e_start="29805" e_stop="29681"/>
            <exon e_start="29377" e_stop="29284"/>
            <exon e_start="29129" e_stop="29063"/>
            <exon e_start="28950" e_stop="28763"/>
            <exon e_start="28680" e_stop="28575"/>
            <exon e_start="28027" e_stop="27941"/>
            <exon e_start="27563" e_stop="27084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.729" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.145" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="33111" e_stop="32868" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32713" e_stop="32586" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31576" e_stop="31468" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31029" e_stop="30948" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30877" e_stop="30807" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30129" e_stop="30088" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.917">
            <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29805" e_stop="29681" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="29680" i_stop="29378" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29377" e_stop="29284" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.875" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29283" i_stop="29130" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29129" e_stop="29063" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.729">
            <gDNA_intron_boundary i_start="29062" i_stop="28951" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28950" e_stop="28763" e_length="188"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="28762" i_stop="28681" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="28680" e_stop="28575" e_length="106"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28574" i_stop="28028" i_length="547"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="28027" e_stop="27941" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.145" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27940" i_stop="27564" i_length="377"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="27563" e_stop="27084" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33111" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30807"/>
              <exon start="30129" stop="30088"/>
              <exon start="29805" stop="29681"/>
              <exon start="29377" stop="29284"/>
              <exon start="29129" stop="29063"/>
              <exon start="28950" stop="28763"/>
              <exon start="28680" stop="28575"/>
              <exon start="28027" stop="27941"/>
              <exon start="27563" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33041" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33040" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33034" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30807"/>
              <exon start="30129" stop="30088"/>
              <exon start="29805" stop="29721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32993" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32899" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30807"/>
              <exon start="30129" stop="30088"/>
              <exon start="29805" stop="29750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30129" stop="30088"/>
              <exon start="29805" stop="29681"/>
              <exon start="29377" stop="29284"/>
              <exon start="29129" stop="29063"/>
              <exon start="28950" stop="28799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC : GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG : GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA : GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA : GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG : CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG : ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG : GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG : AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG : GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG : CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG : CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG : GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</gDNA_template>
            <first_frame> H  R  L  G  F  *  G  L  N  *  Q  R  T  E  A  Y  S  V  T  S  F  S  T  A  S  S  N  A  *  R  L  N  F  *  Q  Q  K  C  L  L  K  K  Q  L  M  R  I  R  S  K  I  I  I  V  D  *  L  M  K  V  A  M  Y  C  L  T  S  M  M  A  T  V  *  F  F  L  V  L  L  L  P   : R  H  *  K  L  G  I  R  S  V  L  F  S  L  L  *  V  V  H  S  G  L  C  F  K  W  S  R  E  K  K  E  P  F  *  L  V  L  L  R  M  Q  K  :  V  T  A  L  K  K  K  T  W  M  D  L  K  T  T  V  R  L  L  I  I  I  L  L  R  V  S  L  V  K  I  L  T  R  C  E   : S  R  E  Q  K  G  M  K  *  L  K  H  S  L  Q  T  V  Q  L  L  R  R  R  H  Y  F  H  K :   I  S  I  G  L  R  N  R  R  N  M  H  L  E  Y  F  *  G  A  P  L  H  E   : A  F  V  R  P  T  S  R  N  I  L  K  K  S   : D  S  C  E  W  M  H  Y  L  Y  C  S  P  W  G  M  L  L  Q  M  Q  M  Y  L  *  W  T  C  S  V  V  F  L  L  V  L  L  Q  N  D  L  E  :  V  L  V  M  C  A  I  L  I  V  D  H  H  H  I  L  S  I  S  Q  G  C  L  I  *  A  M  K  S  V  K   : E  S  C  M  H  H  *  P  T  *  I  H  F  K  L  E  L  Q  C  L  R  V  R :   K  K  P  Y  L  S  L  I  L  V  V  *  T  K  L  V  C  Q  L  K  M  V  A  W  M  *  H  L  R  E  F  L  L  Q  *  S  S  L  L  N  L  *  K  Q  V  R  K  Q  P  S  R  P  S  S  R  G  K  K  T  V  F  P   : A  *  *  L  L  L  R  N  W  T  H  G  A  L  L  K  K  C  F  L  F  Y  H  F  Q  L  L  L  L  F  I  T  S  M  L  S :   P  *  L  R  V  C  T  T  C  R  L  R  K  W  R  L  D  Y  K  F  L  N  L  G  Y  V  N  I  R :   Y  S  H  Q  E  P  I  H  I  C  R  *  A  R  L  V  V  I  Y  *  V  A  R  K  Y  R  A  V  T  P  L  P  A  L  T  R  I  N  F  F  G  I  S  L  C  L  V  V  H  V  A  *  R  Y  H  F  R  L  S  R  I  F  P  V  R  I  D  V  G  I  I  L  S  L  F  W  G  R  N  K  V  T  H  V  V  L  L  F  I  D  *  C  M  L  A  F  V  *  A  I  L  L  N  Q  K  T  K  G  S  F  S  S  Y  F  I  K  Y  L  K  I  K  W  *  I  V  E  L  Y  C  C  L  S  W  I  K  Q  L  K  S  V  L  L  K  K  Y  K  I  C  N  T  T  L  T  I  I  L  Q  L  Q   </first_frame>
            <second_frame>  I  V  *  G  S  R  V  *  T  N  R  E  L  K  L  I  V  *  L  P  S  L  L  L  H  L  M  L  K  D  *  I  F  S  S  K  N  V  Y  *  R  S  S  *  *  G  F  E  A  K  S  *  *  *  I  N  L  *  R  L  Q  C  I  A  *  H  Q  *  W  R  P  F  S  F  F  S  S  Y  C  C  L  :  D  I  E  N  W  E  *  E  V  F  S  S  A  S  Y  R  L  S  I  R  V  S  V  S  S  G  A  G  K  R  R  N  L  F  D  S  F  C  *  E  C  R  R :   *  R  P  *  R  K  R  R  G  W  I  *  R  Q  P  C  A  C  *  *  *  Y  C  S  E  S  H  *  *  R  Y  *  R  D  A  K  :  A  G  S  K  R  G  *  N  S  *  S  T  H  C  K  Q  C  N  F  *  E  E  D  I  I  F  T   : R  *  V  *  G  *  E  T  E  E  I  C  T  S  S  T  F  E  A  P  L  C  T  K  :  H  L  *  G  L  L  Q  E  T  S  *  K  N  R  :  I  H  A  S  G  C  T  I  S  T  A  L  L  G  E  C  Y  C  K  C  R  C  T  C  S  G  H  A  Q  W  Y  S  Y  W  C  Y  C  R  T  T  W  R :   Y  W  L  C  V  Q  Y  L  S  W  I  I  T  I  S  C  R  Y  H  K  D  V  *  F  K  R  *  N  L  *  K  :  N  R  A  C  I  T  D  R  P  E  F  I  S  N  W  S  F  S  V  *  G  S   : G  R  N  L  T  C  H  S  F  W  W  S  R  R  S  *  C  A  S  *  R  W  W  H  G  C  N  T  *  E  S  F  F  S  N  N  Q  A  C  *  I  Y  K  S  R  S  E  S  N  P  R  G  H  Q  V  V  E  R  K  R  F  F  Q  :  P  N  N  C  C  S  G  T  G  P  M  G  H  Y  *  R  S  A  S  S  F  I  I  F  S  S  F  C  C  L  S  P  V  C  S   : A  P  S  Y  V  Y  A  Q  P  A  D  *  E  N  G  D  W  I  T  N  F  *  T  L  A  T  *  I  S   : G  T  P  I  K  N  P  S  T  Y  A  D  E  R  V  W  W  L  Y  T  K  W  H  E  N  I  E  Q  *  L  P  Y  Q  L  *  L  G  *  I  F  L  A  S  H  S  A  W  L  Y  M  S  L  D  D  T  I  F  V  F  R  E  Y  S  L  L  E  *  M  *  G  L  S  C  L  F  S  G  A  E  T  R  L  L  M  L  Y  F  Y  S  L  I  D  V  C  L  L  L  Y  E  Q  F  F  *  I  K  R  L  K  G  L  F  P  L  T  L  *  S  I  *  R  L  S  G  K  L  *  N  Y  I  V  V  F  L  G  S  S  N  *  S  L  F  C  *  R  N  I  K  Y  V  I  Q  H  *  Q  L  F  F  N  S  K  </second_frame>
            <third_frame>   S  F  R  V  L  G  F  K  L  T  E  N  *  S  L  *  C  N  F  L  L  Y  C  F  I  *  C  L  K  I  E  F  L  A  A  K  M  S  I  E  E  A  V  D  E  D  S  K  Q  N  H  N  S  R  L  T  Y  E  G  C  N  V  L  L  D  I  N  D  G  D  R  L  V  F  S  R  L  T  A  A  S :   T  L  K  I  G  N  K  K  C  S  L  Q  P  L  I  G  C  P  F  G  S  L  F  Q  V  E  P  G  K  E  G  T  F  L  T  R  F  V  E  N  A  E   : G  N  G  L  E  E  K  D  V  D  G  S  K  D  N  R  A  L  V  D  N  N  T  A  Q  S  L  T  S  E  D  I  D  E  M  R  K :   Q  G  A  K  G  D  E  I  V  E  A  L  I  A  N  S  A  T  F  E  K  K  T  L  F  S  Q  :  D  K  Y  R  V  K  K  Q  K  K  Y  A  P  R  V  L  L  R  R  P  F  A  R  S :   I  C  E  A  Y  F  K  K  H  P  E  K  I  G :   F  M  R  V  D  A  L  S  L  L  L  S  L  G  N  V  T  A  N  A  D  V  L  V  V  D  M  L  S  G  I  L  T  G  A  I  A  E  R  L  G   : G  T  G  Y  V  C  N  T  Y  R  G  S  S  P  Y  P  V  D  I  T  R  M  F  N  L  S  D  E  I  C  K  R :   I  V  H  A  S  L  T  D  L  N  S  F  Q  T  G  A  S  V  S  E  G  Q  :  E  E  T  L  P  V  T  H  S  G  G  L  D  E  V  S  V  P  A  E  D  G  G  M  D  V  T  P  E  R  V  S  S  P  I  I  K  P  V  K  S  I  K  A  G  Q  K  A  T  L  E  A  I  K  S  W  K  E  N  G  F  S  S :   L  I  I  A  A  P  E  L  D  P  W  G  I  I  K  E  V  L  P  L  L  S  F  S  A  P  F  A  V  Y  H  Q  Y  A  Q  :  P  L  A  T  C  M  H  N  L  Q  I  E  K  M  A  I  G  L  Q  I  S  E  P  W  L  R  E  Y  Q  :  V  L  P  S  R  T  H  P  H  M  Q  M  S  A  F  G  G  Y  I  L  S  G  T  K  I  S  S  S  D  S  L  T  S  S  N  *  D  K  F  F  W  H  L  T  L  L  G  C  T  C  R  L  T  I  P  F  S  S  F  E  N  I  P  C  *  N  R  C  R  D  Y  L  V  S  F  L  G  Q  K  Q  G  Y  S  C  C  T  F  I  H  *  L  M  Y  A  C  F  C  M  S  N  S  S  K  S  K  D  *  R  V  F  F  L  L  L  Y  K  V  F  E  D  *  V  V  N  C  R  I  I  L  L  S  F  L  D  Q  A  I  E  V  C  F  V  E  E  I  *  N  M  *  Y  N  I  N  N  Y  S  S  T  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33031" stop="32868"/>
                    <exon start="32713" stop="32586"/>
                    <exon start="31576" stop="31468"/>
                    <exon start="31029" stop="30948"/>
                    <exon start="30877" stop="30807"/>
                    <exon start="30129" stop="30088"/>
                    <exon start="29805" stop="29681"/>
                    <exon start="29377" stop="29284"/>
                    <exon start="29129" stop="29063"/>
                    <exon start="28950" stop="28763"/>
                    <exon start="28680" stop="28575"/>
                    <exon start="28027" stop="27941"/>
                    <exon start="27563" stop="27456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1368</number_coding_nucleotides>
                  <number_encoded_amino_acids>456</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKIEFLAAKMSIEEAVDEDSKQNHNSRLTYEGCNVLLDINDGDRLVFSRLTAASTLKIGNKKCSLQPLIGCPFGSLFQVEPGKEGTFLTRFVENAEGNGLEEKDVDGSKDNRALVDNNTAQSLTSEDIDEMRKQGAKGDEIVEALIANSATFEKKTLFSQDKYRVKKQKKYAPRVLLRRPFARSICEAYFKKHPEKIGFMRVDALSLLLSLGNVTANADVLVVDMLSGILTGAIAERLGGTGYVCNTYRGSSPYPVDITRMFNLSDEICKRIVHASLTDLNSFQTGASVSEGQEETLPVTHSGGLDEVSVPAEDGGMDVTPERVSSPIIKPVKSIKAGQKATLEAIKSWKENGFSSLIIAAPELDPWGIIKEVLPLLSFSAPFAVYHQYAQPLATCMHNLQIEKMAIGLQISEPWLREYQVLPSRTHPHMQMSAFGGYILSGTKISSSDSLTSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="36559" PGL_stop="39966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36559" e_stop="36909"/>
            <exon e_start="37381" e_stop="37632"/>
            <exon e_start="37735" e_stop="37835"/>
            <exon e_start="39088" e_stop="39966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36559" e_stop="36909" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37381" e_stop="37632" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37735" e_stop="37835" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.976">
            <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="39088" e_stop="39966" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36559" stop="36909"/>
              <exon start="37381" stop="37632"/>
              <exon start="37735" stop="37770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36559" stop="36909"/>
              <exon start="37381" stop="37632"/>
              <exon start="37735" stop="37769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36577" stop="36909"/>
              <exon start="37381" stop="37632"/>
              <exon start="37735" stop="37835"/>
              <exon start="39088" stop="39147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36578" stop="36909"/>
              <exon start="37381" stop="37616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36598" stop="36909"/>
              <exon start="37381" stop="37632"/>
              <exon start="37735" stop="37835"/>
              <exon start="39088" stop="39226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36824" stop="36909"/>
              <exon start="37381" stop="37632"/>
              <exon start="37735" stop="37835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37504" stop="37632"/>
              <exon start="37735" stop="37835"/>
              <exon start="39088" stop="39678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37510" stop="37632"/>
              <exon start="37735" stop="37835"/>
              <exon start="39088" stop="39262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37630" stop="37632"/>
              <exon start="37735" stop="37835"/>
              <exon start="39088" stop="39448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39248" stop="39681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39249" stop="39682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39249" stop="39681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39278" stop="39944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39386" stop="39966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39556" stop="39966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39589" stop="39966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG : GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG : GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG : TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</gDNA_template>
            <first_frame> K  L  L  S  L  F  F  S  Y  E  K  E  N  F  F  N  N  C  S  V  F  F  P  F  S  C  S  V  F  N  G  T  V  N  I  F  T  R  N  I  R  K  K  S  T  F  K  E  E  E  K  T  T  K  T  E  *  G  E  T  K  A  A  I  F  M  G  S  I  Q  K  L  I  D  L  *  T  N  *  K  L  N  C  S  *  S  C  F  Q  K  P  S  S  F  C  C  C  C  C  S  C  W  S  L  L  *  V  E  F  L  *  L  H  M  Q  F  Q  :  G  C  G  T  W  Q  H  K  S  G  T  *  S  *  *  F  P  R  K  *  Q  F  R  P  R  N  S  S  S  K  Q  E  *  N  F  T  S  *  S  F  I  F  K  F  E  I  S  C  *  I  K  R  *  W  *  L  H  I  H  Y  F  I  K  R  N  A  I  S  *  A  I  W  M  L  *  V  S  H  D  S  R  S  *  Q  :  V  P  F  T  K  V  N  N  L  C  M  S  R  L  W  R  S  F  S  K  N  *  E  L  R  T  S  S  S  S  *  T  C  C :   V  R  V  G  S  G  R  F  K  P  *  H  S  G  N  N  L  Q  I  K  L  A  *  K  G  *  S  D  L  *  D  R  T  D  I  K  S  P  Q  H  Q  T  H  D  P  T  V  R  G  L  *  G  R  G  E  D  T  C  S  G  H  R  Q  E  K  P  K  M  C  S  *  W  K  *  A  A  *  I  L  L  H  E  P  Y  V  R  P  W  C  T  W  L  V  Q  L  V  W  L  G  T  R  L  W  S  L  H  Y  H  T  S  R  F  P  R  K  Q  N  *  W  S  P  H  N  C  *  *  W  A  G  P  R  L  S  W  *  R  Y  G  P  T  Q  G  H  D  R  V  S  G  H  C  W  *  S  Q  A  E  C  G  R  F  S  H  E  R  G  G  E  L  L  W  L  W  F  W  F  W  F  W  L  V  C  Y  W  L  Y  H  I  Q  F  S  S  W  T  C  R  D  L  L  K  S  R  G  I  I  R  I  *  S  K  G  Y  T  S  M  L  C  C  D  I  R  S  I  G  I  L  G  L  M  F  F  F  F  *  F  V  L  E  L  F  V  R  F  S  L  F  F  S  F  L  L  C  P  *  I  Y  V  T  N  F  K  L  V  K  K  K  L  *  H  P  *  G  N  A  D  P  T  M  I  F  V  N  I  Y  L  F  Y  L  F  V  L  F  T   </first_frame>
            <second_frame>  N  F  S  L  S  F  S  L  M  K  K  R  T  S  S  T  I  A  L  F  F  S  H  F  L  A  L  F  L  M  A  L  L  T  F  L  P  E  T  S  E  K  N  Q  P  S  K  R  R  K  K  Q  Q  K  Q  N  K  E  K  Q  K  Q  P  S  S  W  D  Q  F  K  N  L  L  T  C  K  Q  I  E  N  S  T  V  H  D  P  A  S  K  N  P  P  P  S  A  A  A  A  A  P  A  G  A  Y  S  K  L  S  S  C  S  S  I  C  S  F  R :   D  V  V  H  G  N  T  R  V  V  H  R  A  D  N  S  P  E  S  S  S  L  G  Q  E  T  R  L  L  S  K  N  K  T  S  H  H  D  P  S  S  S  S  S  R  S  L  A  R  S  N  G  N  G  S  S  T  Y  T  T  S  S  R  G  M  Q  F  R  K  L  S  G  C  Y  E  C  H  M  I  V  D  P  S  R :   Y  P  L  P  R  S  T  I  C  A  C  P  D  C  G  E  V  F  P  K  I  E  S  L  E  H  H  Q  A  V  K  H  A   : V  S  E  L  G  P  E  D  S  S  R  N  I  V  E  I  I  F  K  S  S  W  L  K  K  D  N  P  I  C  K  I  E  R  I  L  K  V  H  N  T  K  R  T  I  Q  R  F  E  D  C  R  D  A  V  K  I  H  A  V  A  T  G  K  K  N  P  R  C  A  A  D  G  N  E  L  L  R  F  Y  C  T  S  L  T  C  V  L  G  A  R  G  S  S  S  L  C  G  S  V  P  G  C  G  V  C  T  T  I  R  H  G  F  Q  G  N  K  T  S  G  V  R  T  T  A  S  S  G  R  A  H  D  C  L  G  S  G  M  A  R  R  R  A  M  I  V  C  R  V  I  A  G  R  V  K  Q  N  V  G  A  S  P  T  K  E  E  E  N  C  S  G  S  G  S  G  S  G  S  G  L  S  A  T  G  S  T  I  Y  N  S  V  A  G  H  V  G  I  Y  S  N  L  E  E  L  Y  V  F  N  P  R  A  I  L  P  C  F  V  V  I  Y  E  A  L  E  S  *  A  *  C  F  F  F  F  N  L  Y  L  S  C  L  Y  G  L  V  C  F  F  L  F  C  C  V  L  K  F  M  *  L  I  S  S  *  L  K  K  S  C  N  T  R  E  V  M  L  I  Q  L  *  F  L  *  I  F  I  Y  F  I  Y  L  S  F  L  H  </second_frame>
            <third_frame>   T  S  L  S  L  F  L  L  *  K  R  E  L  L  Q  Q  L  L  C  F  F  P  I  F  L  L  C  F  *  W  H  C  *  H  F  Y  Q  K  H  Q  K  K  I  N  L  Q  R  G  G  K  N  N  K  N  R  I  R  R  N  K  S  S  H  L  H  G  I  N  S  K  T  Y  *  L  V  N  K  L  K  T  Q  L  F  M  I  L  L  P  K  T  L  L  L  L  L  L  L  L  L  L  L  E  L  T  L  S  *  V  L  V  A  P  Y  A  V  S   : G  M  W  Y  M  A  T  Q  E  W  Y  I  E  L  I  I  P  Q  K  V  A  V  *  A  K  K  L  V  F  *  A  R  I  K  L  H  I  M  I  L  H  L  Q  V  R  D  L  L  L  D  Q  T  V  M  V  A  P  H  T  L  L  H  Q  E  E  C  N  F  V  S  Y  L  D  V  M  S  V  T  *  *  *  I  L  A   : G  T  L  Y  Q  G  Q  Q  F  V  H  V  Q  I  V  E  K  F  F  Q  K  L  R  A  *  N  I  I  K  Q  L  N  M  L  :  C  Q  S  W  V  R  K  I  Q  A  V  T  *  W  K  *  S  S  N  Q  A  G  L  K  R  I  I  R  S  V  R  S  N  G  Y  *  K  S  T  T  P  N  A  R  S  N  G  S  R  T  V  G  T  R  *  R  Y  M  Q  W  P  Q  A  R  K  T  Q  D  V  Q  L  M  E  M  S  C  L  D  F  T  A  R  A  L  R  A  S  L  V  H  V  A  R  P  A  C  V  A  R  Y  P  V  V  E  F  A  L  P  Y  V  T  V  S  K  E  T  K  L  V  E  S  A  Q  L  L  V  V  G  G  P  T  I  V  L  V  A  V  W  P  D  A  G  P  *  S  C  V  G  S  L  L  V  E  S  S  R  M  W  A  L  L  P  R  K  R  R  R  I  A  L  A  L  V  L  V  L  V  L  A  C  L  L  L  A  L  P  Y  T  I  Q  *  L  D  M  *  G  F  T  Q  I  S  R  N  Y  T  Y  L  I  Q  G  L  Y  F  H  A  L  L  *  Y  T  K  H  W  N  L  R  L  N  V  F  F  F  L  I  C  T  *  A  V  C  T  V  *  F  V  F  F  F  F  V  V  S  L  N  L  C  N  *  F  Q  V  S  *  K  K  V  V  T  P  V  R  *  C  *  S  N  Y  D  F  C  K  Y  L  F  I  L  F  I  C  P  F  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36560" stop="36909"/>
                    <exon start="37381" stop="37632"/>
                    <exon start="37735" stop="37835"/>
                    <exon start="39088" stop="39764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSLSFSLMKKRTSSTIALFFSHFLALFLMALLTFLPETSEKNQPSKRRKKQQKQNKEKQKQPSSWDQFKNLLTCKQIENSTVHDPASKNPPPSAAAAAPAGAYSKLSSCSSICSFRDVVHGNTRVVHRADNSPESSSLGQETRLLSKNKTSHHDPSSSSSRSLARSNGNGSSTYTTSSRGMQFRKLSGCYECHMIVDPSRYPLPRSTICACPDCGEVFPKIESLEHHQAVKHAVSELGPEDSSRNIVEIIFKSSWLKKDNPICKIERILKVHNTKRTIQRFEDCRDAVKIHAVATGKKNPRCAADGNELLRFYCTSLTCVLGARGSSSLCGSVPGCGVCTTIRHGFQGNKTSGVRTTASSGRAHDCLGSGMARRRAMIVCRVIAGRVKQNVGASPTKEEENCSGSGSGSGSGLSATGSTIYNSVAGHVGIYSNLEELYVFNPRAILPCFVVIYEALES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49618" PGL_stop="53768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49618" e_stop="50197"/>
            <exon e_start="50808" e_stop="50958"/>
            <exon e_start="51044" e_stop="51226"/>
            <exon e_start="51790" e_stop="51864"/>
            <exon e_start="51963" e_stop="52118"/>
            <exon e_start="52205" e_stop="52300"/>
            <exon e_start="52403" e_stop="52536"/>
            <exon e_start="52632" e_stop="52713"/>
            <exon e_start="53118" e_stop="53768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.964"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.865"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="49618" e_stop="50197" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50808" e_stop="50958" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51044" e_stop="51226" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.818" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51227" i_stop="51789" i_length="563"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51790" e_stop="51864" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.929">
            <gDNA_intron_boundary i_start="51865" i_stop="51962" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51963" e_stop="52118" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.828">
            <gDNA_intron_boundary i_start="52119" i_stop="52204" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52205" e_stop="52300" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="52403" e_stop="52536" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52632" e_stop="52713" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404"/>
          </intron>
          <exon e_serial="9" e_score="0.865">
            <gDNA_exon_boundary e_start="53118" e_stop="53768" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49618" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49834" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49854" stop="50197"/>
              <exon start="50808" stop="50835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49858" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51226"/>
              <exon start="51790" stop="51864"/>
              <exon start="51963" stop="52118"/>
              <exon start="52205" stop="52300"/>
              <exon start="52403" stop="52536"/>
              <exon start="52632" stop="52713"/>
              <exon start="53118" stop="53768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49858" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49883" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49895" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51226"/>
              <exon start="51790" stop="51864"/>
              <exon start="51963" stop="52118"/>
              <exon start="52205" stop="52300"/>
              <exon start="52403" stop="52536"/>
              <exon start="52632" stop="52713"/>
              <exon start="53118" stop="53702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49935" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52270" stop="52300"/>
              <exon start="52403" stop="52536"/>
              <exon start="52632" stop="52713"/>
              <exon start="53118" stop="53522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52270" stop="52300"/>
              <exon start="52403" stop="52536"/>
              <exon start="52632" stop="52713"/>
              <exon start="53118" stop="53510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52270" stop="52300"/>
              <exon start="52403" stop="52536"/>
              <exon start="52632" stop="52713"/>
              <exon start="53118" stop="53427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG : GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG : GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT : GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG : GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG : ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG : ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAG : GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG : GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGATAAAAAGCACATGTATCAGTAAATATAGAACATCTTGTTTGTTTTGTAATTGTGAAATAAGCACAA</gDNA_template>
            <first_frame> Q  K  S  C  N  A  L  C  Y  G  L  V  S  A  L  *  K  *  R  T  V  L  *  L  A  K  F  L  Y  S  F  I  K  S  S  H  H  Y  F  I  E  I  Q  L  F  F  I  I  I  L  F  E  I  Q  L  F  K  Q  T  F  F  F  F  Q  V  L  K  V  E  I  F  K  H  S  V  S  T  S  P  F  I  V  S  L  F  F  S  V  T  Q  L  N  *  S  H  C  Y  L  K  C  R  S  P  L  A  R  R  P  S  D  P  S  M  F  H  D  H  L  I  K  R  S  L  G  H  V  S  L  Y  L  P  S  D  L  L  T  A  *  E  *  H  Q  F  *  R  S  C  R  K  I  V  L  L  L  F  Q  F  C  A  T  W  R  M  Q  W  P  M  I  *  G  P  G  L  P  S  T  A  A  V  I  *  R  *  S  L  V  M  S  T  L  Y  Q  L   : G  M  R  K  A  C  F  M  R  W  T  L  V  V  Q  I  S  G  C  *  G  C  S  *  V  V  K  K  S  V  *  S  P  L  S  L  S  K  S  L  Y  P  K  N  *  C  L  L  P  P  R :   S  F  S  I  S  *  L  L  R  *  E  N  L  H  K  R  K  V  V  I  L  S  C  N  R  D  G  Q  G  K  *  D  S  R  F  L  F  R  *  N  R  L  Q  *  E  L  E  S  *  S  N  G  Q  K  V  L  L  S  L  E  L :   R  E  K  M  L  L  L  V  *  M  K  P  W  R  G  G  E  W  I  C  K  C  L  P  W :   S  M  T  L  W  E  H  L  P  E  Q  D  T  G  M  M  M  P  W  L  L  S  F  L  G  L  E  P  M  L  A  M  *  N  V  W  M  L  F  L  S  W  Q  K  G  C  L  S  L  Q  *  R :   L  *  I  P  N  G  E  L  S  Q  M  A  F  L  *  L  S  L  I  E  K  W  M  P  R  A  L  T  L  V  S  R :   F  L  K  R  P  S  L  V  C  T  L  G  K  L  *  D  G  C  W  S  K  W  P  R  L  G  A  Y  L  V  A  A  M  F  R  K  S  *  S  L  H  L  C  *   : G  H  L  I  Y  V  P  C  S  R  I  H  Q  *  I  L  K  L  L  S  L  S  S  M  M  *  L  G :   *  N  P  I  *  V  Q  G  K  Q  S  W  T  F  A  I  L  L  Q  N  E  G  V  V  *  L  V  Q  E  L  L  V  Y  Y  R  K  W  R  K  I  L  K  V  S  S  L  V  K  E  Q  L  *  Q  W  M  E  A  Y  M  S  T  I  L  S  T  E  D  T  S  K  K  L  S  Q  S  Y  *  A  R  K  F  R  K  M  *  *  *  N  I  Q  K  M  D  L  V  L  E  L  H  Y  *  L  L  Q  I  Q  S  M  N  M  M  I  K  G  K  A  K  F  H  V  F  K  G  L  L  E  E  K  Y  M  S  I  C  N  L  E  C  S  K  E  G  L  M  I  G  F  I  E  A  L  V  C  D  A  I  F  C  T  P  I  N  E  V  R  R  S  E  D  L  Y  S  Q  P  Q  F  I  W  N  R  G  V  V  V  I  V  L  Y  A  A  L  T  Y  L  C  D  K  K  H  M  Y  Q  *  I  *  N  I  L  F  V  L  *  L  *  N  K  H   </first_frame>
            <second_frame>  R  K  A  V  M  L  S  A  T  V  *  F  Q  H  Y  E  S  N  E  Q  F  Y  S  *  P  N  S  Y  I  L  S  L  N  P  H  I  I  I  L  L  K  F  N  C  F  S  S  L  F  Y  L  K  F  N  C  S  N  K  L  F  F  F  F  K  C  *  K  L  R  S  S  N  T  L  F  Q  R  H  H  L  L  S  L  F  F  S  P  S  H  N  *  I  D  L  T  V  T  *  N  V  G  H  R  *  L  A  G  R  P  I  L  P  C  F  T  I  T  S  *  N  D  L  *  A  T  C  H  Y  I  C  R  P  I  Y  *  Q  L  R  S  S  T  N  F  D  E  V  A  E  R  L  C  Y  S  S  S  S  F  A  P  R  G  G  C  N  G  R  *  Y  E  G  R  A  C  R  R  R  R  Q  *  S  E  D  D  P  *  L  C  R  H  S  T  N  W  :  E  *  E  R  L  V  L  C  V  G  P  W  W  Y  K  F  P  G  A  K  G  A  A  R  W  *  R  R  A  C  S  R  H  *  V  *  A  S  L  Y  T  P  R  T  D  V  C  Y  L  R   : G  A  F  R  F  H  S  F  C  A  R  K  I  C  T  K  G  R  W  *  F  *  V  A  T  G  T  D  K  G  N  R  I  H  V  F  F  S  G  E  T  D  F  N  K  N  W  N  P  N  Q  M  D  K  R  F  C  C  L  W  N   : C  G  K  R  C  C  C  L  S  E  *  S  H  G  E  A  G  N  G  Y  A  S  V  C  P   : G  Q  *  H  C  G  N  T  C  R  S  K  I  L  G  *  *  C  H  G  C  C  H  S  W  D  W  N  Q  C  L  L  C  R  T  C  G  C  Y  S  *  A  G  K  K  D  V  *  V  S  N  N   : D  C  E  Y  R  M  G  S  F  L  K  W  P  S  F  N  *  V  *  *  R  N  G  C  R  E  H  *  P  W  *  A   : D  F  *  K  D  H  L  W  Y  V  P  W  G  N  C  E  T  G  A  G  Q  N  G  Q  G  W  G  L  I  W  *  Q  L  C  S  G  K  A  S  H  S  I  C  A  E  :  D  T  *  Y  M  C  H  A  A  G  Y  I  N  R  S  *  S  C  *  V  C  P  L  *  C  S  W   : G  K  I  R  S  K  C  K  E  N  S  R  G  H  L  R  Y  Y  C  K  T  R  G  S  S  S  W  C  R  N  C  W  Y  I  T  E  N  G  G  R  F  *  R  S  H  L  W  *  K  N  S  C  S  N  G  W  R  L  I  *  A  L  S  S  V  Q  R  I  P  P  R  S  C  H  R  A  T  R  L  G  N  F  E  K  C  S  D  R  T  F  K  R  W  I  W  Y  W  S  C  I  I  S  C  C  K  F  K  V  *  T  *  *  L  R  E  K  L  N  F  M  C  S  K  V  C  L  R  K  N  T  *  A  F  V  I  *  N  V  L  K  K  D  *  *  L  D  L  *  R  L  L  F  V  M  P  F  F  V  L  P  L  M  K  Y  E  E  V  R  I  Y  I  A  N  P  N  L  F  G  I  E  A  *  L  *  L  Y  Y  M  Q  H  *  L  I  Y  V  I  K  S  T  C  I  S  K  Y  R  T  S  C  L  F  C  N  C  E  I  S  T  </second_frame>
            <third_frame>   E  K  L  *  C  S  L  L  R  F  S  F  S  T  M  K  V  T  N  S  F  I  V  S  Q  I  L  I  F  F  H  *  I  L  T  S  L  F  Y  *  N  S  T  V  F  H  H  Y  F  I  *  N  S  T  V  Q  T  N  F  F  F  F  S  S  V  K  S  *  D  L  Q  T  L  C  F  N  V  T  I  Y  C  L  S  F  F  L  R  H  T  I  E  L  I  S  L  L  P  K  M  S  V  T  V  S  S  P  A  V  R  S  F  H  V  S  R  S  P  H  K  T  I  S  R  P  R  V  I  I  S  A  V  R  S  T  D  S  L  G  V  A  P  I  L  T  K  L  Q  K  D  C  A  T  P  L  P  V  L  R  H  V  A  D  A  M  A  D  D  M  R  A  G  L  A  V  D  G  G  S  D  L  K  M  I  L  S  Y  V  D  T  L  P  T  G :   N  E  K  G  L  F  Y  A  L  D  L  G  G  T  N  F  R  V  L  R  V  Q  L  G  G  K  E  E  R  V  V  A  T  E  F  E  Q  V  S  I  P  Q  E  L  M  F  A  T  S  E  :  E  L  F  D  F  I  A  S  A  L  G  K  F  A  Q  K  E  G  G  N  F  E  L  Q  Q  G  R  T  R  E  I  G  F  T  F  S  F  P  V  K  Q  T  S  I  R  T  G  I  L  I  K  W  T  K  G  F  A  V  S  G  T  :  A  G  K  D  V  V  A  C  L  N  E  A  M  E  R  R  G  M  D  M  Q  V  S  A  L  :  V  N  D  T  V  G  T  L  A  G  A  R  Y  W  D  D  D  A  M  V  A  V  I  L  G  T  G  T  N  A  C  Y  V  E  R  V  D  A  I  P  K  L  A  K  R  M  S  K  S  P  I  T  :  I  V  N  T  E  W  G  A  F  S  N  G  L  P  L  T  E  F  D  R  E  M  D  A  E  S  I  N  P  G  E  Q  :  I  F  E  K  T  I  S  G  M  Y  L  G  E  I  V  R  R  V  L  V  K  M  A  K  V  G  G  L  F  G  S  S  Y  V  P  E  K  L  V  T  P  F  V  L  R :   T  P  D  I  C  A  M  Q  Q  D  T  S  I  D  L  E  A  V  E  S  V  L  Y  D  V  A  G  :  V  K  S  D  L  S  A  R  K  T  V  V  D  I  C  D  T  I  A  K  R  G  G  R  L  A  G  A  G  I  V  G  I  L  Q  K  M  E  E  D  S  K  G  L  I  F  G  K  R  T  V  V  A  M  D  G  G  L  Y  E  H  Y  P  Q  Y  R  G  Y  L  Q  E  A  V  T  E  L  L  G  S  E  I  S  K  N  V  V  I  E  H  S  K  D  G  S  G  I  G  A  A  L  L  A  A  A  N  S  K  Y  E  H  D  D  *  G  K  S  *  I  S  C  V  Q  R  F  A  *  G  K  I  H  E  H  L  *  F  R  M  F  *  R  R  I  D  D  W  I  Y  R  G  S  C  L  *  C  H  F  L  Y  S  H  *  *  S  T  K  K  *  G  F  I  *  P  T  P  I  Y  L  E  S  R  R  S  C  N  C  I  I  C  S  T  D  L  F  M  *  *  K  A  H  V  S  V  N  I  E  H  L  V  C  F  V  I  V  K  *  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49824" stop="50197"/>
                    <exon start="50808" stop="50958"/>
                    <exon start="51044" stop="51226"/>
                    <exon start="51790" stop="51864"/>
                    <exon start="51963" stop="52118"/>
                    <exon start="52205" stop="52300"/>
                    <exon start="52403" stop="52536"/>
                    <exon start="52632" stop="52713"/>
                    <exon start="53118" stop="53456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQTLCFNVTIYCLSFFLRHTIELISLLPKMSVTVSSPAVRSFHVSRSPHKTISRPRVIISAVRSTDSLGVAPILTKLQKDCATPLPVLRHVADAMADDMRAGLAVDGGSDLKMILSYVDTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFATSEELFDFIASALGKFAQKEGGNFELQQGRTREIGFTFSFPVKQTSIRTGILIKWTKGFAVSGTAGKDVVACLNEAMERRGMDMQVSALVNDTVGTLAGARYWDDDAMVAVILGTGTNACYVERVDAIPKLAKRMSKSPITIVNTEWGAFSNGLPLTEFDREMDAESINPGEQIFEKTISGMYLGEIVRRVLVKMAKVGGLFGSSYVPEKLVTPFVLRTPDICAMQQDTSIDLEAVESVLYDVAGVKSDLSARKTVVDICDTIAKRGGRLAGAGIVGILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRGYLQEAVTELLGSEISKNVVIEHSKDGSGIGAALLAAANSKYEHDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49618" e_stop="50197"/>
            <exon e_start="50808" e_stop="50958"/>
            <exon e_start="51044" e_stop="51227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.964"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="49618" e_stop="50197" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="50808" e_stop="50958" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="51044" e_stop="51227" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49618" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49834" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49854" stop="50197"/>
              <exon start="50808" stop="50835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49858" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49882" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49883" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49935" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG : GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG : GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTG</gDNA_template>
            <first_frame> Q  K  S  C  N  A  L  C  Y  G  L  V  S  A  L  *  K  *  R  T  V  L  *  L  A  K  F  L  Y  S  F  I  K  S  S  H  H  Y  F  I  E  I  Q  L  F  F  I  I  I  L  F  E  I  Q  L  F  K  Q  T  F  F  F  F  Q  V  L  K  V  E  I  F  K  H  S  V  S  T  S  P  F  I  V  S  L  F  F  S  V  T  Q  L  N  *  S  H  C  Y  L  K  C  R  S  P  L  A  R  R  P  S  D  P  S  M  F  H  D  H  L  I  K  R  S  L  G  H  V  S  L  Y  L  P  S  D  L  L  T  A  *  E  *  H  Q  F  *  R  S  C  R  K  I  V  L  L  L  F  Q  F  C  A  T  W  R  M  Q  W  P  M  I  *  G  P  G  L  P  S  T  A  A  V  I  *  R  *  S  L  V  M  S  T  L  Y  Q  L   : G  M  R  K  A  C  F  M  R  W  T  L  V  V  Q  I  S  G  C  *  G  C  S  *  V  V  K  K  S  V  *  S  P  L  S  L  S  K  S  L  Y  P  K  N  *  C  L  L  P  P  R :   S  F  S  I  S  *  L  L  R  *  E  N  L  H  K  R  K  V  V  I  L  S  C  N  R  D  G  Q  G  K  *  D  S  R  F  L  F  R  *  N  R  L  Q  *  E  L  E  S  *  S  N  G  Q  K  V  L  L  S  L  E  L </first_frame>
            <second_frame>  R  K  A  V  M  L  S  A  T  V  *  F  Q  H  Y  E  S  N  E  Q  F  Y  S  *  P  N  S  Y  I  L  S  L  N  P  H  I  I  I  L  L  K  F  N  C  F  S  S  L  F  Y  L  K  F  N  C  S  N  K  L  F  F  F  F  K  C  *  K  L  R  S  S  N  T  L  F  Q  R  H  H  L  L  S  L  F  F  S  P  S  H  N  *  I  D  L  T  V  T  *  N  V  G  H  R  *  L  A  G  R  P  I  L  P  C  F  T  I  T  S  *  N  D  L  *  A  T  C  H  Y  I  C  R  P  I  Y  *  Q  L  R  S  S  T  N  F  D  E  V  A  E  R  L  C  Y  S  S  S  S  F  A  P  R  G  G  C  N  G  R  *  Y  E  G  R  A  C  R  R  R  R  Q  *  S  E  D  D  P  *  L  C  R  H  S  T  N  W  :  E  *  E  R  L  V  L  C  V  G  P  W  W  Y  K  F  P  G  A  K  G  A  A  R  W  *  R  R  A  C  S  R  H  *  V  *  A  S  L  Y  T  P  R  T  D  V  C  Y  L  R   : G  A  F  R  F  H  S  F  C  A  R  K  I  C  T  K  G  R  W  *  F  *  V  A  T  G  T  D  K  G  N  R  I  H  V  F  F  S  G  E  T  D  F  N  K  N  W  N  P  N  Q  M  D  K  R  F  C  C  L  W  N   </second_frame>
            <third_frame>   E  K  L  *  C  S  L  L  R  F  S  F  S  T  M  K  V  T  N  S  F  I  V  S  Q  I  L  I  F  F  H  *  I  L  T  S  L  F  Y  *  N  S  T  V  F  H  H  Y  F  I  *  N  S  T  V  Q  T  N  F  F  F  F  S  S  V  K  S  *  D  L  Q  T  L  C  F  N  V  T  I  Y  C  L  S  F  F  L  R  H  T  I  E  L  I  S  L  L  P  K  M  S  V  T  V  S  S  P  A  V  R  S  F  H  V  S  R  S  P  H  K  T  I  S  R  P  R  V  I  I  S  A  V  R  S  T  D  S  L  G  V  A  P  I  L  T  K  L  Q  K  D  C  A  T  P  L  P  V  L  R  H  V  A  D  A  M  A  D  D  M  R  A  G  L  A  V  D  G  G  S  D  L  K  M  I  L  S  Y  V  D  T  L  P  T  G :   N  E  K  G  L  F  Y  A  L  D  L  G  G  T  N  F  R  V  L  R  V  Q  L  G  G  K  E  E  R  V  V  A  T  E  F  E  Q  V  S  I  P  Q  E  L  M  F  A  T  S  E  :  E  L  F  D  F  I  A  S  A  L  G  K  F  A  Q  K  E  G  G  N  F  E  L  Q  Q  G  R  T  R  E  I  G  F  T  F  S  F  P  V  K  Q  T  S  I  R  T  G  I  L  I  K  W  T  K  G  F  A  V  S  G  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49824" stop="50197"/>
                    <exon start="50808" stop="50958"/>
                    <exon start="51044" stop="51226"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQTLCFNVTIYCLSFFLRHTIELISLLPKMSVTVSSPAVRSFHVSRSPHKTISRPRVIISAVRSTDSLGVAPILTKLQKDCATPLPVLRHVADAMADDMRAGLAVDGGSDLKMILSYVDTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFATSEELFDFIASALGKFAQKEGGNFELQQGRTREIGFTFSFPVKQTSIRTGILIKWTKGFAVSGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56961" PGL_stop="60169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56961" e_stop="57081"/>
            <exon e_start="57228" e_stop="57326"/>
            <exon e_start="57409" e_stop="57459"/>
            <exon e_start="58763" e_stop="58936"/>
            <exon e_start="59239" e_stop="59298"/>
            <exon e_start="59827" e_stop="60169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56961" e_stop="57081" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57228" e_stop="57326" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57409" e_stop="57459" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58763" e_stop="58936" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59239" e_stop="59298" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="59827" e_stop="60169" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56961" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="59857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57028" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57028" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="59941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57062" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57068" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57070" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57071" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57071" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59952" stop="60096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K  G  S  L  Q  V  *  I  *  M  S  L  S  I  P  S  L  N  M  N  I  F  I  F  C  *  L  Q  K  L  Y  C  C  W  K  *  E  K  G  Y  F  N  T   </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  V  V  C  K  F  K  Y  E  C  L  Y  L  F  P  V  *  I  *  I  S  L  S  F  V  N  S  R  N  Y  I  V  V  G  S  R  K  R  V  I  S  I  R  </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R  *  F  A  S  L  N  M  N  V  S  I  Y  S  Q  F  K  Y  E  Y  L  Y  L  L  L  T  P  E  T  I  L  L  L  E  V  G  K  G  L  F  Q  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57016" stop="57081"/>
                    <exon start="57228" stop="57326"/>
                    <exon start="57409" stop="57459"/>
                    <exon start="58763" stop="58936"/>
                    <exon start="59239" stop="59298"/>
                    <exon start="59827" stop="59868"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56961" e_stop="57081"/>
            <exon e_start="57228" e_stop="57326"/>
            <exon e_start="57409" e_stop="57459"/>
            <exon e_start="58763" e_stop="58936"/>
            <exon e_start="59239" e_stop="59298"/>
            <exon e_start="59827" e_stop="60042"/>
            <exon e_start="60123" e_stop="60130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.653" acc_prob="0.614" e_score="0.995"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56961" e_stop="57081" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57228" e_stop="57326" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57409" e_stop="57459" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58763" e_stop="58936" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59239" e_stop="59298" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="59827" e_stop="60042" e_length="216"/>
          </exon>
          <intron i_serial="6" don_prob="0.653" acc_prob="0.614">
            <gDNA_intron_boundary i_start="60043" i_stop="60122" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.625">
            <gDNA_exon_boundary e_start="60123" e_stop="60130" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56961" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="59857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56983" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60042"/>
              <exon start="60123" stop="60130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57028" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="59941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57062" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57068" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57070" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57071" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAG : AAACTATA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K   : E  T  I </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  :  K  L   </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R :   N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57016" stop="57081"/>
                    <exon start="57228" stop="57326"/>
                    <exon start="57409" stop="57459"/>
                    <exon start="58763" stop="58936"/>
                    <exon start="59239" stop="59298"/>
                    <exon start="59827" stop="59868"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="57581" e_stop="58487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="57581" e_stop="58487" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57581" stop="58060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57812" stop="58487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57812" stop="58411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57813" stop="58098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</gDNA_template>
            <first_frame> K  M  *  L  S  V  L  F  S  I  Y  R  T  P  Y  *  A  N  L  L  Q  L  C  *  G  K  G  F  S  F  A  S  L  *  F  S  K  S  S  N  V  *  L  S  Y  T  V  R  G  *  C  P  L  G  G  E  L  F  C  F  P  S  T  L  R  L  H  I  I  M  T  F  H  I  I  G  E  V  I  S  R  W  F  I  V  F  I  Y  H  C  I  I  N  T  C  S  V  G  I  K  G  I  T  L  *  N  D  *  R  I  G  S  G  G  G  F  K  I  L  F  K  I  *  F  L  C  R  V  T  Y  V  M  A  *  Y  E  I  L  I  E  T  F  L  R  T  Y  M  L  F  P  N  S  V  S  W  L  *  K  I  *  R  L  E  E  S  G  R  V  E  G  G  K  D  Q  E  R  R  A  I  S  L  L  L  V  H  D  *  R  I  Y  L  E  S  Y  T  D  Y  F  L  C  I  I  L  A  S  I  L  V  *  Y  S  W  I  *  F  L  K  E  S  K  N  V  N  L  Q  K  E  T  K  E  A  L  C  F  N  F  V  G  *  S  F  L  M  R  C  F  V  K  Y  N  I  L  F  K  S  P  R  *  H  K  V  Q  S  K  I  S  D  R  S  S  F  F  L  S  K  *  F  I  L  G  A  V  R  G  K  V  K  Q  R  K  R  E  K  T  S  L  R  F  E  L  V  Y  </first_frame>
            <second_frame>  K  C  D  Y  L  S  C  F  R  S  I  E  H  H  T  K  R  I  C  Y  N  C  A  K  A  K  G  S  L  S  L  A  F  N  F  L  K  V  V  M  F  N  Y  L  I  L  *  E  D  D  V  L  L  V  E  N  Y  F  A  F  P  L  R  Y  A  C  T  L  S  *  H  F  T  L  L  V  K  *  Y  Q  D  G  L  S  Y  L  S  T  I  A  S  *  I  L  V  P  L  V  S  K  E  *  L  C  E  M  I  E  G  *  G  V  V  G  D  S  R  Y  C  S  K  F  N  F  C  V  E  *  P  M  L  W  L  S  M  K  F  L  L  R  H  F  S  V  P  T  C  C  F  L  I  Q  Y  L  G  F  R  K  F  R  G  W  K  R  V  G  E  W  R  E  G  R  I  K  K  E  E  P  F  P  F  C  L  C  M  I  R  G  F  I  *  N  H  I  Q  T  T  F  Y  A  S  F  *  L  Q  Y  W  C  N  I  P  G  S  D  F  L  K  N  Q  K  M  L  T  C  K  R  K  Q  K  K  H  C  V  L  T  L  L  G  N  P  F  S  *  D  A  S  *  S  I  T  Y  Y  L  K  V  L  D  D  I  K  Y  K  A  R  Y  R  T  E  A  L  F  S  *  V  S  D  L  S  L  E  L  *  G  G  R  *  S  K  G  R  E  R  K  Q  V  *  G  L  N  L  C  I </second_frame>
            <third_frame>   N  V  I  I  C  L  V  F  D  L  *  N  T  I  L  S  E  F  A  T  I  V  L  R  Q  R  V  L  F  R  *  P  L  I  F  *  K  *  *  C  L  T  I  L  Y  C  E  R  M  M  S  S  W  W  R  T  I  L  L  S  L  Y  A  T  P  A  H  Y  H  D  I  S  H  Y  W  *  S  N  I  K  M  V  Y  R  I  Y  L  P  L  H  H  K  Y  L  F  R  W  Y  Q  R  N  N  F  V  K  *  L  K  D  R  E  W  W  G  I  Q  D  I  V  Q  N  L  I  S  V  *  S  N  L  C  Y  G  L  V  *  N  S  Y  *  D  I  S  P  Y  L  H  V  V  S  *  F  S  I  L  A  L  E  N  L  E  V  G  R  E  W  E  S  G  G  R  E  G  S  R  K  K  S  H  F  P  F  A  C  A  *  L  E  D  L  F  R  I  I  Y  R  L  L  F  M  H  H  S  S  F  N  I  G  V  I  F  L  D  L  I  S  *  R  I  K  K  C  *  P  A  K  G  N  K  R  S  I  V  F  *  L  C  W  V  I  L  S  H  E  M  L  R  E  V  *  H  T  I  *  K  S  S  M  T  *  S  T  K  Q  D  I  G  Q  K  L  F  F  P  K  *  V  I  Y  P  W  S  C  K  G  E  G  K  A  K  E  E  R  E  N  K  F  E  V  *  T  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178J08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="61260" PGL_stop="60577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61260" e_stop="60577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="61260" e_stop="60577" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61260" stop="60587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60766" stop="60577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</gDNA_template>
            <first_frame> Q  Y  K  F  G  G  V  S  T  S  Q  M  R  D  W  Q  N  A  G  R  P  M  P  I  F  G  P  S  Q  A  Q  L  A  A  S  S  S  S  M  E  A  L  S  S  K  Y  V  P  P  L  L  N  E  Q  E  L  M  S  I  S  T  S  R  T  N  S  R  I  K  G  Q  Y  Y  S  F  P  S  G  L  E  G  S  G  H  G  L  Y  P  N  N  V  P  S  L  Q  L  L  C  N  D  R  R  *  Y  G  E  P  W  H  H  V  H  N  I  R  A  K  L  L  Q  I  I  I  D  L  F  F  S  L  L  M  H  E  S  W  C  S  F  C  Y  *  I  *  G  T  Q  K  R  E  D  I  V  N  L  M  S  L  I  R  C  L  F  C  F  S  F  N  *  L  *  S  N  N  F  R  N  G  C  W  F  F  P  R  W  K  E  T  L  C  V  *  E  G  Y  *  L  V  V  Y  T  R  R  R  M  A  M  K  K  I  A  A  A  L  N  F  F  Q  Q  F  S  G  K  *  S  V  L  L  Y </first_frame>
            <second_frame>  S  T  S  L  V  E  S  L  P  H  K  C  E  T  G  K  M  Q  G  D  Q  C  L  S  L  D  L  L  K  L  N  W  Q  L  L  L  P  R  W  K  H  F  L  P  S  M  F  H  P  C  *  T  S  R  S  L  C  P  F  L  R  H  E  L  I  Q  G  S  K  D  N  I  T  V  S  L  L  A  W  K  E  V  D  M  D  S  T  P  I  M  C  L  H  C  S  F  F  A  M  I  V  V  N  T  E  S  H  G  T  M  S  I  I  S  E  R  N  S  C  K  S  *  L  I  Y  S  F  L  C  L  C  M  R  V  G  V  H  S  V  T  E  Y  K  E  H  K  K  G  R  I  *  *  I  S  C  P  L  L  D  A  Y  S  V  S  V  S  I  N  Y  R  V  T  T  S  E  M  V  V  G  F  S  L  D  G  K  K  L  Y  V  S  E  K  V  I  D  L  *  Y  T  Q  E  E  E  W  Q  *  K  K  L  Q  L  L  *  I  S  F  S  N  F  Q  E  N  K  V  F  F  Y   </second_frame>
            <third_frame>   V  Q  V  W  W  S  L  Y  L  T  N  A  R  L  A  K  C  R  A  T  N  A  Y  L  W  T  F  S  S  S  I  G  S  F  F  F  L  D  G  S  T  F  F  Q  V  C  S  T  L  V  E  R  A  G  A  Y  V  H  F  Y  V  T  N  *  F  K  D  Q  R  T  I  L  Q  F  P  F  W  L  G  R  K  W  T  W  T  L  P  Q  *  C  A  F  I  A  A  S  L  Q  *  S  S  L  I  R  R  A  M  A  P  C  P  *  Y  Q  S  E  T  P  A  N  H  N  *  F  I  L  F  F  A  Y  A  *  E  L  V  F  I  L  L  L  N  I  R  N  T  K  K  G  G  Y  S  K  S  H  V  P  Y  *  M  L  I  L  F  Q  F  Q  L  I  I  E  *  Q  L  Q  K  W  L  L  V  F  P  *  M  E  R  N  F  M  C  L  R  R  L  L  T  C  S  I  H  K  K  K  N  G  N  E  K  N  C  S  C  F  K  F  L  S  A  I  F  R  K  I  K  C  S  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61260" stop="60952"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYKFGGVSTSQMRDWQNAGRPMPIFGPSQAQLAASSSSMEALSSKYVPPLLNEQELMSISTSRTNSRIKGQYYSFPSGLEGSGHGLYPNNVPSLQLLCNDRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="65707" PGL_stop="62101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64040" e_stop="63735"/>
            <exon e_start="63601" e_stop="63394"/>
            <exon e_start="63308" e_stop="63130"/>
            <exon e_start="63054" e_stop="63000"/>
            <exon e_start="62876" e_stop="62807"/>
            <exon e_start="62730" e_stop="62640"/>
            <exon e_start="62543" e_stop="62193"/>
            <exon e_start="62124" e_stop="62101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="0.954"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="64040" e_stop="63735" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63601" e_stop="63394" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63308" e_stop="63130" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63054" e_stop="63000" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62876" e_stop="62807" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62640" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="62543" e_stop="62193" e_length="351"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62192" i_stop="62125" i_length="68"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62124" e_stop="62101" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64040" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63966" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63841" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63819" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63550" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63469" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62193"/>
              <exon start="62124" stop="62101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> V  L  F  R  F  L  N  L  W  N  H  *  K  V  L  N  L  Q  F  G  *  L  Y  W  P  S  F  W  F  *  S  L  I  R  *  N  G  S  C  L  S  *  T  L  D  F  Q  L  I  I  N  C  L  L  L  D  P  L  P  F  V  V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </first_frame>
            <second_frame>  S  Y  F  A  F  *  T  F  G  I  I  K  K  Y  L  I  C  N  L  G  D  C  T  G  Q  V  S  G  F  N  L  L  *  G  E  M  V  L  V  *  V  K  L  W  T  S  N  *  S  *  I  V  C  F  W  I  L  C  P  L  *  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </second_frame>
            <third_frame>   L  I  S  L  F  K  P  L  E  S  L  K  S  T  *  S  A  I  W  V  I  V  L  A  K  F  L  V  L  I  S  Y  K  V  K  W  F  L  F  E  L  N  F  G  L  P  I  D  H  K  L  F  A  F  G  S  F  A  L  C  S  Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63914" stop="63735"/>
                    <exon start="63601" stop="63394"/>
                    <exon start="63308" stop="63130"/>
                    <exon start="63054" stop="63000"/>
                    <exon start="62876" stop="62807"/>
                    <exon start="62730" stop="62640"/>
                    <exon start="62543" stop="62193"/>
                    <exon start="62124" stop="62101"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1158</number_coding_nucleotides>
                  <number_encoded_amino_acids>386</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLDFQLIINCLLLDPLPFVVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63979" e_stop="63940"/>
            <exon e_start="63856" e_stop="63735"/>
            <exon e_start="63601" e_stop="63394"/>
            <exon e_start="63308" e_stop="63130"/>
            <exon e_start="63054" e_stop="63000"/>
            <exon e_start="62876" e_stop="62807"/>
            <exon e_start="62730" e_stop="62640"/>
            <exon e_start="62543" e_stop="62193"/>
            <exon e_start="62124" e_stop="62101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.476" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63979" e_stop="63940" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.476" acc_prob="0.699">
            <gDNA_intron_boundary i_start="63939" i_stop="63857" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63856" e_stop="63735" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63601" e_stop="63394" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63308" e_stop="63130" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63054" e_stop="63000" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62876" e_stop="62807" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62640" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="62543" e_stop="62193" e_length="351"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62192" i_stop="62125" i_length="68"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62124" e_stop="62101" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63979" stop="63940"/>
              <exon start="63856" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63979" stop="63940"/>
              <exon start="63856" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63979" stop="63940"/>
              <exon start="63856" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63841" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63819" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63550" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63469" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62193"/>
              <exon start="62124" stop="62101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> D  C  T  G  Q  V  S  G  F  N  L  L  *   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </first_frame>
            <second_frame>  I  V  L  A  K  F  L  V  L  I  S  Y  K  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </second_frame>
            <third_frame>   L  Y  W  P  S  F  W  F  *  S  L  I  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63940" stop="63735"/>
                    <exon start="63601" stop="63394"/>
                    <exon start="63308" stop="63130"/>
                    <exon start="63054" stop="63000"/>
                    <exon start="62876" stop="62807"/>
                    <exon start="62730" stop="62640"/>
                    <exon start="62543" stop="62193"/>
                    <exon start="62124" stop="62101"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64665" e_stop="64373"/>
            <exon e_start="64292" e_stop="64235"/>
            <exon e_start="63856" e_stop="63735"/>
            <exon e_start="63601" e_stop="63394"/>
            <exon e_start="63308" e_stop="63130"/>
            <exon e_start="63054" e_stop="63000"/>
            <exon e_start="62876" e_stop="62807"/>
            <exon e_start="62730" e_stop="62640"/>
            <exon e_start="62543" e_stop="62193"/>
            <exon e_start="62124" e_stop="62101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.932"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="64665" e_stop="64373" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64292" e_stop="64235" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63856" e_stop="63735" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63601" e_stop="63394" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63308" e_stop="63130" e_length="179"/>
          </exon>
          <intron i_serial="5" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63054" e_stop="63000" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62876" e_stop="62807" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62640" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="62543" e_stop="62193" e_length="351"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62192" i_stop="62125" i_length="68"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="62124" e_stop="62101" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64665" stop="64373"/>
              <exon start="64292" stop="64235"/>
              <exon start="63856" stop="63735"/>
              <exon start="63601" stop="63505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63841" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63819" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63550" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63469" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62193"/>
              <exon start="62124" stop="62101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> V  I  C  Y  S  S  L  S  F  F  L  F  *  F  F  L  *  F  L  L  S  T  Q  N  S  L  I  I  F  L  G  F  A  L  N  A  *  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </first_frame>
            <second_frame>  L  S  V  T  V  L  Y  P  S  F  C  F  D  F  S  C  D  F  C  F  P  H  K  I  L  *  *  Y  F  W  V  L  L  *  M  L  R  L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </second_frame>
            <third_frame>   Y  L  L  Q  F  F  I  L  L  F  V  L  I  F  L  V  I  S  A  F  H  T  K  F  S  D  N  I  S  G  F  C  F  E  C  L  D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64474" stop="64373"/>
                    <exon start="64292" stop="64235"/>
                    <exon start="63856" stop="63735"/>
                    <exon start="63601" stop="63394"/>
                    <exon start="63308" stop="63130"/>
                    <exon start="63054" stop="63000"/>
                    <exon start="62876" stop="62807"/>
                    <exon start="62730" stop="62640"/>
                    <exon start="62543" stop="62193"/>
                    <exon start="62124" stop="62101"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="65707" e_stop="65583"/>
            <exon e_start="64554" e_stop="64373"/>
            <exon e_start="64292" e_stop="64235"/>
            <exon e_start="63856" e_stop="63735"/>
            <exon e_start="63601" e_stop="63394"/>
            <exon e_start="63308" e_stop="63130"/>
            <exon e_start="63054" e_stop="63000"/>
            <exon e_start="62876" e_stop="62807"/>
            <exon e_start="62730" e_stop="62640"/>
            <exon e_start="62543" e_stop="62193"/>
            <exon e_start="62124" e_stop="62101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65707" e_stop="65583" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65582" i_stop="64555" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64554" e_stop="64373" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64292" e_stop="64235" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63856" e_stop="63735" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63601" e_stop="63394" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63308" e_stop="63130" e_length="179"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63054" e_stop="63000" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62876" e_stop="62807" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62640" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="62543" e_stop="62193" e_length="351"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62192" i_stop="62125" i_length="68"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62124" e_stop="62101" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65707" stop="65583"/>
              <exon start="64554" stop="64373"/>
              <exon start="64292" stop="64235"/>
              <exon start="63856" stop="63735"/>
              <exon start="63601" stop="63441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63841" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63819" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63550" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63469" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62193"/>
              <exon start="62124" stop="62101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG : ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> K  Q  S  N  *  S  F  S  C  E  I  L  R  E  S  G  N  Q  K  P  K  A  S  V  F  P  F  V  K  Q  K  Y  S  Q  I  A  K  S  L  L  F  G :   L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </first_frame>
            <second_frame>  N  R  V  T  D  R  F  R  V  K  S  *  E  N  R  V  I  K  N  R  K  L  R  F  F  R  L  L  S  R  N  I  L  R  *  L  N  R  Y  Y  L   : D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </second_frame>
            <third_frame>   T  E  *  L  I  V  F  V  *  N  L  E  R  I  G  *  S  K  T  E  S  F  G  F  S  V  C  *  A  E  I  F  S  D  S  *  I  V  T  I  W  :  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64474" stop="64373"/>
                    <exon start="64292" stop="64235"/>
                    <exon start="63856" stop="63735"/>
                    <exon start="63601" stop="63394"/>
                    <exon start="63308" stop="63130"/>
                    <exon start="63054" stop="63000"/>
                    <exon start="62876" stop="62807"/>
                    <exon start="62730" stop="62640"/>
                    <exon start="62543" stop="62193"/>
                    <exon start="62124" stop="62101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="68862" PGL_stop="71574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68862" e_stop="69037"/>
            <exon e_start="69481" e_stop="70177"/>
            <exon e_start="70852" e_stop="71574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.987"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68862" e_stop="69037" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="69481" e_stop="70177" e_length="697"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674"/>
          </intron>
          <exon e_serial="3" e_score="0.921">
            <gDNA_exon_boundary e_start="70852" e_stop="71574" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68862" stop="69037"/>
              <exon start="69481" stop="69778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68865" stop="69037"/>
              <exon start="69481" stop="69829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68865" stop="69037"/>
              <exon start="69481" stop="69763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68866" stop="69037"/>
              <exon start="69481" stop="69843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68870" stop="69037"/>
              <exon start="69481" stop="70119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68870" stop="69037"/>
              <exon start="69481" stop="69877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68870" stop="69037"/>
              <exon start="69481" stop="69663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68871" stop="69037"/>
              <exon start="69481" stop="70177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68871" stop="69037"/>
              <exon start="69481" stop="69845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68872" stop="69037"/>
              <exon start="69481" stop="69821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68872" stop="69037"/>
              <exon start="69481" stop="69786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68873" stop="69037"/>
              <exon start="69481" stop="69906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68873" stop="69037"/>
              <exon start="69481" stop="69847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68944" stop="69037"/>
              <exon start="69481" stop="70082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68944" stop="69037"/>
              <exon start="69481" stop="70024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69554" stop="70177"/>
              <exon start="70852" stop="71096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69557" stop="70158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69608" stop="70177"/>
              <exon start="70852" stop="71137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69628" stop="70177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69636" stop="70177"/>
              <exon start="70852" stop="71095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69682" stop="70177"/>
              <exon start="70852" stop="70995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70146" stop="70177"/>
              <exon start="70852" stop="71323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70880" stop="71574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71054" stop="71574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71097" stop="71574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG : GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG : TCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAGAGGTCTCCATAGCCACAAAATTTAGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAGAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGTGATTTATTTCTT</gDNA_template>
            <first_frame> Y  I  S  P  F  S  I  F  K  R  K  K  K  K  E  K  A  R  D  F  D  L  Q  A  L  F  C  I  I  N  I  P  T  F  F  F  N  G  A  S  E  T  A  L  S  I  C  S  V  F  N  Y  Y  T  A  V  H  S  R :   C  K  F  S  C  N  I  Y  N  G  E  *  M  S  A  N  N  L  A  W  I  I  I  *  R  R  N  S  S  T  F  H  H  W  F  C  S  T  K  R  *  I  E  N  N  Q  C  A  H  F  M  G  R  Q  I  L  G  S  Y  T  L  Y  R  R  F  H  R  K  I  H  L  R  H  R  R  L  R  L  R  *  A  R  M  R  R  W  Q  R  C  T  A  G  N  S  S  *  I  H  T  R  R  I  Q  R  D  G  F  L  R  R  Q  F  S  R  W  V  Q  L  T  N  A  C  G  T  T  R  W  F  W  *  Q  L  Y  K  Y  R  M  C  G  G  F  E  R  R  V  S  V  G  A  E  S  N  E  P  G  R  R  K  R  R  V  *  E  R  V  *  S  F  S  K  R  *  V  L  L  R  R  S  V  *  *  S  D  N  L  *  T  I  I  V  F  N  V  V  *  K  S  L  S  E  C  L  Q  L  C  L  R  *  *  N  E  Y  L  H  L  C  W  R  *  *  L  S  Y  H  I  L  S  F  T  *  Y  Q  :  S  K  V  V  I  I  I  K  W  T  K  S  K  T  R  R  *  *  Q  S  K  R  Q  R  *  *  Q  R  A  I  N  D  Q  Q  L  Y  G  I  *  W  C  M  G  Y  Q  *  C  I  F  N  H  H  V  H  A  R  V  Q  F  T  G  H  S  R  C  R  R  L  L  N  S  L  F  P  V  A  S  S  A  L  L  I  F  Y  F  *  L  F  V  D  T  R  K  K  K  L  G  E  K  A  G  L  T  R  P  M  L  F  C  R  N  L  G  C  C  I  T  C  G  P  L  N  W  A  L  *  P  T  C  V  A  H  V  T  G  K  *  V  S  L  R  V  N  L  I  D  V  H  R  I  T  F  *  L  V  K  K  E  V  S  I  A  T  K  F  R  V  L  E  V  I  *  F  F  I  L  F  Y  L  T  F  F  *  F  Y  I  L  N  F  N  *  D  W  D  *  V  L  G  E  G  D  S  F  G  R  *  V  L  V  R  K  I  M  Y  N  M  L  L  C  L  *  P  F  Q  V  G  G  N  Y  I  N  L  K  K  W  I  G  D  L  F  L </first_frame>
            <second_frame>  T  F  L  L  F  P  F  L  R  G  R  R  R  R  R  R  L  G  I  L  I  Y  K  L  S  F  A  S  L  I  F  P  P  S  S  S  M  A  Q  V  K  L  L  C  L  F  A  L  F  L  T  I  T  Q  L  F  I  A   : G  V  N  S  A  A  T  F  T  M  V  N  K  C  Q  Q  T  I  W  P  G  L  L  S  N  A  G  I  A  P  L  S  T  T  G  F  V  L  Q  K  D  E  S  K  T  I  S  V  P  T  S  W  G  G  R  F  W  A  R  T  H  C  T  E  D  S  T  G  K  F  T  C  A  T  G  D  C  G  S  G  K  L  E  C  A  G  G  N  A  A  P  P  A  T  L  A  E  F  T  L  D  G  S  N  G  M  D  F  F  D  V  S  L  V  D  G  Y  N  L  P  M  L  V  V  P  Q  G  G  S  G  N  N  C  T  S  T  G  C  V  V  D  L  N  G  A  C  P  S  E  L  K  V  M  S  L  G  G  E  N  V  A  C  K  S  A  C  E  A  F  R  K  D  E  Y  C  C  A  G  A  F  N  N  P  T  T  C  K  P  S  S  Y  S  T  L  F  K  K  A  C  P  S  A  Y  S  Y  A  Y  D  D  K  T  S  T  F  T  C  A  G  A  N  N  Y  L  I  T  F  C  P  S  P  N  T  S :   Q  K  S  S  S  S  S  S  G  Q  N  Q  K  P  E  D  S  N  N  Q  N  D  N  D  N  N  N  E  P  S  T  I  N  N  S  M  V  Y  D  G  A  W  D  I  N  S  A  S  S  T  T  T  C  M  H  V  F  S  S  P  A  I  A  G  A  V  A  F  L  T  A  S  F  Q  L  H  R  Q  L  Y  *  F  F  I  F  D  F  L  L  T  L  E  K  K  N  *  A  K  R  P  A  *  P  G  P  C  Y  F  V  G  I  W  G  V  V  S  R  V  D  H  *  I  G  P  C  D  P  H  V  W  P  M  *  R  G  N  E  S  A  Y  V  S  I  *  L  T  Y  T  E  L  P  F  N  W  *  K  K  R  S  P  *  P  Q  N  L  E  F  W  R  L  F  N  F  L  F  Y  F  I  *  L  F  F  S  F  I  F  *  I  L  I  K  I  G  I  R  F  *  E  R  E  I  H  L  V  G  R  F  *  L  E  K  L  C  I  I  C  F  Y  V  C  N  H  S  K  L  V  E  I  I  *  T  *  K  N  G  L  V  I  Y  F   </second_frame>
            <third_frame>   H  F  S  F  F  H  F  *  E  E  E  E  E  G  E  G  *  G  F  *  S  T  S  S  L  L  H  H  *  Y  S  H  L  L  L  Q  W  R  K  *  N  C  S  V  Y  L  L  C  F  *  L  L  H  S  C  S  *  Q  :  V  *  I  Q  L  Q  H  L  Q  W  *  I  N  V  S  K  Q  F  G  L  D  Y  Y  L  T  P  E  *  L  H  F  P  P  L  V  L  F  Y  K  K  M  N  R  K  Q  S  V  C  P  L  H  G  A  A  D  S  G  L  V  H  I  V  P  K  I  P  P  E  N  S  P  A  P  P  A  I  A  A  P  V  S  S  N  A  P  V  A  T  L  H  R  R  Q  L  *  L  N  S  H  S  T  D  P  T  G  W  I  S  S  T  S  V  *  S  M  G  T  T  Y  Q  C  L  W  Y  H  K  V  V  L  V  T  I  V  Q  V  P  D  V  W  W  I  *  T  A  R  V  R  R  S  *  K  *  *  A  W  E  A  K  T  S  R  V  R  A  R  V  K  L  F  E  K  M  S  I  V  A  P  E  R  L  I  I  R  Q  L  V  N  H  H  R  I  Q  R  C  L  K  K  L  V  R  V  L  T  A  M  L  T  M  I  K  R  V  P  S  L  V  L  A  L  I  I  I  L  S  H  F  V  L  H  L  I  P   : V  K  S  R  H  H  H  Q  V  D  K  I  K  N  Q  K  I  V  T  I  K  T  T  T  I  I  T  T  S  H  Q  R  S  T  T  L  W  Y  M  M  V  H  G  I  S  I  V  H  L  Q  P  P  R  A  C  T  C  S  V  H  R  P  *  P  V  P  S  P  S  *  Q  P  L  S  S  C  I  V  S  S  T  N  F  L  F  L  T  F  C  *  H  S  K  K  K  I  R  R  K  G  R  P  D  P  A  H  V  I  L  S  E  F  G  V  L  Y  H  V  W  T  I  K  L  G  L  V  T  H  M  C  G  P  C  D  G  E  M  S  Q  L  T  C  Q  F  N  *  R  T  P  N  Y  L  L  I  G  E  K  R  G  L  H  S  H  K  I  *  S  F  G  G  Y  L  I  F  Y  F  I  L  F  D  F  F  L  V  L  Y  F  K  F  *  L  R  L  G  L  G  F  R  R  G  R  F  I  W  *  V  G  F  S  *  K  N  Y  V  *  Y  A  F  M  F  V  T  I  P  S  W  W  K  L  Y  K  L  K  K  M  D  W  *  F  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68863" stop="69037"/>
                    <exon start="69481" stop="70177"/>
                    <exon start="70852" stop="71095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFLLFPFLRGRRRRRRLGILIYKLSFASLIFPPSSSMAQVKLLCLFALFLTITQLFIAGVNSAATFTMVNKCQQTIWPGLLSNAGIAPLSTTGFVLQKDESKTISVPTSWGGRFWARTHCTEDSTGKFTCATGDCGSGKLECAGGNAAPPATLAEFTLDGSNGMDFFDVSLVDGYNLPMLVVPQGGSGNNCTSTGCVVDLNGACPSELKVMSLGGENVACKSACEAFRKDEYCCAGAFNNPTTCKPSSYSTLFKKACPSAYSYAYDDKTSTFTCAGANNYLITFCPSPNTSQKSSSSSSGQNQKPEDSNNQNDNDNNNEPSTINNSMVYDGAWDINSASSTTTCMHVFSSPAIAGAVAFLTASFQLHRQLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70348" e_stop="70862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="70348" e_stop="70862" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70348" stop="70862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGT</gDNA_template>
            <first_frame> G  L  S  N  G  T  L  G  R  Y  F  Q  F  K  E  K  I  S  D  I  I  L  F  V  G  V  C  G  L  *  G  N  *  *  G  Y  F  G  T  L  H  S  M  *  D  H  F  Y  R  R  M  G  S  T  Y  S  E  L  V  L  Y  N  I  I  Y  E  V  I  V  I  G  V  C  G  Y  I  *  G  Y  F  S  T  C  A  N  *  V  S  F  G  N  W  E  K  Y  Q  T  *  R  L  K  E  I  L  *  P  K  T  M  N  C  P  F  Y  P  S  S  H  S  P  P  I  G  L  V  L  R  E  F  V  K  F  I  R  I  K  C  L  L  K  Y  I  L  F  L  *  N  K  N  *  S  T  L  I  R  I  Y  I  A  D  S  I  I  Q  F  P  L  Q  S  K  V   </first_frame>
            <second_frame>  A  C  Q  M  E  R  *  D  V  I  F  N  L  K  K  K  Y  L  T  S  Y  Y  S  *  G  Y  V  G  Y  K  E  I  S  R  G  I  L  V  L  Y  I  V  C  E  I  I  F  I  G  E  W  V  P  R  I  V  N  *  Y  F  I  T  *  Y  M  R  S  L  *  *  G  Y  V  V  I  Y  R  G  I  L  V  L  V  L  T  K  S  A  L  G  I  G  K  N  I  K  L  N  G  L  K  R  F  S  D  P  R  L  *  I  V  L  F  I  Q  V  A  I  A  H  Q  L  V  *  F  C  V  N  S  S  N  L  F  E  S  N  V  Y  *  N  I  F  Y  F  Y  K  I  R  I  D  R  H  *  *  G  F  I  *  L  I  Q  *  Y  N  F  H  C  S  Q  K  S  </second_frame>
            <third_frame>   P  V  K  W  N  V  R  T  L  F  S  I  *  R  K  N  I  *  H  H  I  I  R  R  G  M  W  A  I  R  K  L  V  G  V  F  W  Y  F  T  *  Y  V  R  S  F  L  *  E  N  G  F  H  V  *  *  I  S  T  L  *  H  N  I  *  G  H  C  N  R  G  M  W  L  Y  I  G  V  F  *  Y  L  C  *  L  S  Q  L  W  E  L  G  K  I  S  N  L  T  A  *  R  D  S  L  T  Q  D  Y  E  L  S  F  L  S  K  *  P  *  P  T  N  W  S  S  S  A  *  I  R  Q  I  Y  S  N  Q  M  F  I  K  I  Y  F  I  F  I  K  *  E  L  I  D  I  N  K  D  L  Y  S  *  F  N  N  T  I  S  I  A  V  K  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178J08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="87812" PGL_stop="89716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87812" e_stop="88094"/>
            <exon e_start="89284" e_stop="89716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="0.947"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="87812" e_stop="88094" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="88095" i_stop="89283" i_length="1189"/>
          </intron>
          <exon e_serial="2" e_score="0.891">
            <gDNA_exon_boundary e_start="89284" e_stop="89716" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87812" stop="88094"/>
              <exon start="89284" stop="89716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87812" stop="88094"/>
              <exon start="89284" stop="89553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGATACGACGGGTTGTGTGAAGGATTTGAACCGAATGTGCCCGAATGAGTTACGGGTCGGGGACGGGCAAGCATGCAAAAGTGCATGTGAAGCATTTGGTACGCCGGAATATTGTTGCAGCGGCGCGTACGGTTCACCTTCCACCTGTAAGCCGTCAAGTTACTCGGCGATGTTTAAAAACGCGTGCCCAAAATCGTATAGCTACGCATACGATGATCCTACGAGTACATTTACGTGTACAGGAGCTGATTATACGATAACATTCTGTCCTTCATTAACAAG : TCAAAAATCTTCGAGAGATTCTTCGCCATTGAACGGCAACGGAAAGGGATTTTCGATCGGAAATGGCGGATCCGGGTCGGGTACCAGTCCAGCGGAGGATCCATTTCCATTTGGCAGTTCATGGTTACCAGATTTTATGACAGGGGACTCATCACAAACAAAATTTTCTAATTTTCACTTAAAAATTGCATTATTTATCTTTTTATTTCTTCACCTTTTATTAATATTTTAATTTTTTCCGATTTAATTTCTATATTTCATGGTGACTTTGAGATATTCACATTTGAAGGAGATCAAGAAAAAAAAAAGGCTGATGATTTTTTTTTCTTCATGTAAAGCACATTTTTATAGGTTTCACATGTATAGAGATTTTAATTTGCAATTTTTTGAAGTAGTAAATATTATTTCAGTGTTCACATTTGCTTTTGTACTA</gDNA_template>
            <first_frame> A  I  R  R  V  V  *  R  I  *  T  E  C  A  R  M  S  Y  G  S  G  T  G  K  H  A  K  V  H  V  K  H  L  V  R  R  N  I  V  A  A  A  R  T  V  H  L  P  P  V  S  R  Q  V  T  R  R  C  L  K  T  R  A  Q  N  R  I  A  T  H  T  M  I  L  R  V  H  L  R  V  Q  E  L  I  I  R  *  H  S  V  L  H  *  Q   : V  K  N  L  R  E  I  L  R  H  *  T  A  T  E  R  D  F  R  S  E  M  A  D  P  G  R  V  P  V  Q  R  R  I  H  F  H  L  A  V  H  G  Y  Q  I  L  *  Q  G  T  H  H  K  Q  N  F  L  I  F  T  *  K  L  H  Y  L  S  F  Y  F  F  T  F  Y  *  Y  F  N  F  F  R  F  N  F  Y  I  S  W  *  L  *  D  I  H  I  *  R  R  S  R  K  K  K  G  *  *  F  F  F  L  H  V  K  H  I  F  I  G  F  T  C  I  E  I  L  I  C  N  F  L  K  *  *  I  L  F  Q  C  S  H  L  L  L  Y   </first_frame>
            <second_frame>  R  Y  D  G  L  C  E  G  F  E  P  N  V  P  E  *  V  T  G  R  G  R  A  S  M  Q  K  C  M  *  S  I  W  Y  A  G  I  L  L  Q  R  R  V  R  F  T  F  H  L  *  A  V  K  L  L  G  D  V  *  K  R  V  P  K  I  V  *  L  R  I  R  *  S  Y  E  Y  I  Y  V  Y  R  S  *  L  Y  D  N  I  L  S  F  I  N  K  :  S  K  I  F  E  R  F  F  A  I  E  R  Q  R  K  G  I  F  D  R  K  W  R  I  R  V  G  Y  Q  S  S  G  G  S  I  S  I  W  Q  F  M  V  T  R  F  Y  D  R  G  L  I  T  N  K  I  F  *  F  S  L  K  N  C  I  I  Y  L  F  I  S  S  P  F  I  N  I  L  I  F  S  D  L  I  S  I  F  H  G  D  F  E  I  F  T  F  E  G  D  Q  E  K  K  K  A  D  D  F  F  F  F  M  *  S  T  F  L  *  V  S  H  V  *  R  F  *  F  A  I  F  *  S  S  K  Y  Y  F  S  V  H  I  C  F  C  T  </second_frame>
            <third_frame>   D  T  T  G  C  V  K  D  L  N  R  M  C  P  N  E  L  R  V  G  D  G  Q  A  C  K  S  A  C  E  A  F  G  T  P  E  Y  C  C  S  G  A  Y  G  S  P  S  T  C  K  P  S  S  Y  S  A  M  F  K  N  A  C  P  K  S  Y  S  Y  A  Y  D  D  P  T  S  T  F  T  C  T  G  A  D  Y  T  I  T  F  C  P  S  L  T  S :   Q  K  S  S  R  D  S  S  P  L  N  G  N  G  K  G  F  S  I  G  N  G  G  S  G  S  G  T  S  P  A  E  D  P  F  P  F  G  S  S  W  L  P  D  F  M  T  G  D  S  S  Q  T  K  F  S  N  F  H  L  K  I  A  L  F  I  F  L  F  L  H  L  L  L  I  F  *  F  F  P  I  *  F  L  Y  F  M  V  T  L  R  Y  S  H  L  K  E  I  K  K  K  K  R  L  M  I  F  F  S  S  C  K  A  H  F  Y  R  F  H  M  Y  R  D  F  N  L  Q  F  F  E  V  V  N  I  I  S  V  F  T  F  A  F  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87814" stop="88094"/>
                    <exon start="89284" stop="89515"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTTGCVKDLNRMCPNELRVGDGQACKSACEAFGTPEYCCSGAYGSPSTCKPSSYSAMFKNACPKSYSYAYDDPTSTFTCTGADYTITFCPSLTSQKSSRDSSPLNGNGKGFSIGNGGSGSGTSPAEDPFPFGSSWLPDFMTGDSSQTKFSNFHLKIALFIFLFLHLLLIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="97160" PGL_stop="91651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97160" e_stop="97018"/>
            <exon e_start="96521" e_stop="96401"/>
            <exon e_start="96310" e_stop="96157"/>
            <exon e_start="96077" e_stop="95997"/>
            <exon e_start="95895" e_stop="95784"/>
            <exon e_start="95701" e_stop="95575"/>
            <exon e_start="95490" e_stop="95352"/>
            <exon e_start="94610" e_stop="94493"/>
            <exon e_start="94201" e_stop="94002"/>
            <exon e_start="93898" e_stop="93683"/>
            <exon e_start="93576" e_stop="93411"/>
            <exon e_start="93330" e_stop="93189"/>
            <exon e_start="93101" e_stop="92951"/>
            <exon e_start="92711" e_stop="92310"/>
            <exon e_start="92224" e_stop="91651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.451" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.672" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97160" e_stop="97018" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96521" e_stop="96401" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96310" e_stop="96157" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.889" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96077" e_stop="95997" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95895" e_stop="95784" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95701" e_stop="95575" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="95490" e_stop="95352" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.451">
            <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94610" e_stop="94493" e_length="118"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94201" e_stop="94002" e_length="200"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="93898" e_stop="93683" e_length="216"/>
          </exon>
          <intron i_serial="10" don_prob="0.909" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="93576" e_stop="93411" e_length="166"/>
          </exon>
          <intron i_serial="11" don_prob="0.972" acc_prob="0.986">
            <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="93330" e_stop="93189" e_length="142"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="93101" e_stop="92951" e_length="151"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.672">
            <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="92711" e_stop="92310" e_length="402"/>
          </exon>
          <intron i_serial="14" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85"/>
          </intron>
          <exon e_serial="15" e_score="0.991">
            <gDNA_exon_boundary e_start="92224" e_stop="91651" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97160" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97156" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97148" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97143" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97143" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97143" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97140" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97137" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97134" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97132" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97132" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97125" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97113" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96480" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96480" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96229" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95352"/>
              <exon start="94610" stop="94493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96228" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95352"/>
              <exon start="94610" stop="94581"/>
            </gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92395" stop="92310"/>
              <exon start="92224" stop="91718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92392" stop="92310"/>
              <exon start="92224" stop="91738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92352" stop="92310"/>
              <exon start="92224" stop="91738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92352" stop="92310"/>
              <exon start="92224" stop="91747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92352" stop="92310"/>
              <exon start="92224" stop="91748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92326" stop="92310"/>
              <exon start="92224" stop="91729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92322" stop="92310"/>
              <exon start="92224" stop="91675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92150" stop="91734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92085" stop="91732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92049" stop="91732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92005" stop="91738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92000" stop="91651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91896" stop="91659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAG : GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG : GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT : GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG : ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG : CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA : ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG : GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT : CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG : GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG : GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG : ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC : AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG : GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG : GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATGATTTGATAGTGTCAAATCAAAAAA</gDNA_template>
            <first_frame> N  T  L  L  *  T  L  L  V  K  S  S  A  G  D  L  *  S  *  N  S  G  D  G  D  N  E  E  V  E  D  P  V  R  P  V  S  V  M  P  D  L  P  C  S  R  S  R :   S  K  D  T  G  K  C  R  S  *  F  *  C  T  S  R  S  T  K  G  *  G  E  V  W  C  C  S  *  W  F  I  D  *  F  *  C  G  *  E  :  G  S  *  V  Y  V  K  E  N  S  P  S  *  C  G  E  V  *  V  P  G  *  G  L  S  S  Y  G  H  P  Y  Q  L  S  L  Q  *  Q  G  H  L  F  E  G  A  D  F  Q  C  F  *   : C  T  G  Q  D  *  V  P  C  T  H  *  Q  G  G  S  W  *  G  *  *  Y  *  A  *  D  S   : D  *  T  *  *  R  K  E  N  S  F  H  S  R  Q  R  C  W  N  D  Q  G  G  S  K  K  E  F  G  N  H  S  *  I  W  N  F  S :   F  C  R  E  D  A  D  K  W  *  P  *  P  D  W  T  I  W  C  W  V  L  L  C  V  S  C  G  *  L  C  *  S  H  Q  Q  A  Q  *  R  Q  T  :  I  C  L  G  I  K  G  R  W  G  I  C  H  F  *  R  Y  M  E  *  T  S  W  P  W  N  *  N  *  T  A  S  K  R  *  S  R  G  I  F  G  *  A  Q  T  K   : G  I  G  Q  E  I  F  *  I  H  Q  L  P  Y  K  F  M  G  K  Q  R  G  *  E  G  S  S  C  *  *  G  R  V  S  *  *  R  G  N  I :   *  K  H  F  L  *  G  R  G  R  R  R  R  C  R  E  G  R  R  *  E  E  A  *  N  *  D  S  E  G  N  H  I  *  V  G  A  F  K  *  H  E  S  Y  M  A  S  K  P  K  G  S  Y  R  *  R  I  *  *  V  L  S  L  S  G  K   : G  L  Q  *  R  *  T  H  G  V  E  S  L  Q  C  *  R  *  C  R  V  Q  G  C  S  I  H  P  S  *  S  P  S  *  F  V  *  E  L  L  Q  H  K  A  I  Q  L  E  V  I  C  Q  T  G  F  H  L  R  *  I  *  *  I  V  A  Q  V  L  E  F  P  N   : G  S  C  *  F  *  H  L  T  P  Q  C  L  K  R  N  A  S  A  A  Q  Q  F  E  D  N  *  E  K  T  H  P  *  G  P  *  H  D  P  Q  T  C  R  R  G  S  R  *  N  *  *  Q  G  E  E  R :   C  *  R  V  Q  *  *  K  *  E  E  R  S  I  C  Q  I  L  E  *  I  W  K  V  D  *  A  W  Y  Y  R  R  R  N  *  Q  K  P  L  S  *  T  S  S  I  *  D  :  N  Q  I  R  W  *  I  N  F  T  *  P  I  H  L  K  N  E  I  K  S  K  G  Y  L  L  H  H  R  C  Q  Q  R  T  V  G  E  I  S  L  P  *  K  T  *  *  E  R  L  *   : G  Y  I  L  H  R  S  S  R  *  I  P  H  A  I  S  Y  G  L  *  R  Q  K  V  P  E  C  V  *  R  G  I  K  A  *  G  F  E  N  Q  R  A  Q  G  V  I  Q  G  A  N  *  V  V  E  E  Y  S  C  *  *  Q  R  *  R  C  Q  D  K  Q  P  F  G  R  H  P  L  C  C  G  N  I  K  I  R  M  E  C  I  Y  G  E  N  N  A  F  T  N  P  V  R  C  K  Q  A  S  I  H  A  W  *  K  G  A  *  N  Q  S  *  A  P  N  Y  Q  G  T  S  G  E  S  S  N  R  P  R   : G  R  E  C  E  V  D  S  K  T  Y  I  P  N  S  F  N  G  E  W  L  R  S  E  *  S  K  G  F  C  L  P  H  L  Q  L  S  K  E  Q  S  K  H  *  P  *  C  N  S  *  G  R  R  R  R  S  *  R  T  *  D  *  N  Q  G  R  R  G  V  C  I  G  *  V  *  T  Q  G  *  A  I  D  S  V  L  R  Y  V  P  F  S  R  K  Q  H  V  V  V  V  C  F  S  T  R  E  E  C  R  N  S  L  V  H  S  L  K  L  K  K  N  F  V  S  L  A  F  S  L  F  *  C  M  S  L  S  F  R  V  T  N  L  E  G  L  V  F  S  *  L  E  L  V  K  A  L  V  F  L  R  K  S  T  F  D  V  L  Q  L  F  F  F  L  N  F  T  G  K  I  S  S  A  *  A  *  F  D  S  V  K  S  K   </first_frame>
            <second_frame>  T  L  Y  F  E  R  C  L  *  N  H  R  P  A  T  S  K  V  E  I  P  V  T  E  T  M  R  K  W  K  I  P  F  V  L  F  L  L  C  L  I  Y  L  V  P  D  Q   : G  R  K  I  Q  A  N  A  E  A  D  S  D  A  P  V  D  P  P  K  V  E  E  K  F  G  A  V  P  N  G  L  S  T  D  S  D  V  A  K  R :   E  A  E  S  M  S  R  K  T  L  R  A  S  A  E  K  F  E  F  Q  A  E  V  S  R  L  M  D  I  L  I  N  S  L  Y  S  N  K  D  I  F  L  R  E  L  I  S  N  A  S  D  :  A  L  D  K  I  R  F  L  A  L  T  D  K  E  V  L  G  E  G  D  N  T  K  L  E  I  Q  :  I  K  L  D  K  E  K  K  I  L  S  I  R  D  R  G  V  G  M  T  K  E  D  L  R  K  N  L  G  T  I  A  K  S  G  T  S   : A  F  V  E  K  M  Q  T  S  G  D  L  N  L  I  G  Q  F  G  V  G  F  Y  S  V  Y  L  V  A  D  Y  V  E  V  I  S  K  H  N  D  D  K  Q :   Y  V  W  E  S  K  A  D  G  A  F  A  I  S  E  D  T  W  N  E  P  L  G  R  G  T  E  I  R  L  H  L  R  D  E  A  G  E  Y  L  D  E  L  K  L  K  :  E  L  V  K  K  Y  S  E  F  I  N  F  P  I  N  L  W  A  S  K  E  V  E  K  E  V  P  A  D  E  D  E  S  V  D  E  E  E  T   : S  E  S  T  S  S  E  E  E  G  E  E  E  D  A  E  K  A  E  D  E  K  K  P  K  T  K  T  V  K  E  T  T  Y  E  W  E  L  L  N  D  M  K  A  I  W  L  R  S  P  K  E  V  T  D  E  E  Y  N  K  F  Y  H  S  L  A  K  :  D  F  S  E  D  K  P  M  A  W  S  H  F  N  A  E  G  D  V  E  F  K  A  V  L  F  I  P  P  K  A  P  H  D  L  Y  E  S  Y  Y  N  T  K  Q  S  N  L  K  L  Y  V  R  R  V  F  I  S  D  E  F  N  E  L  L  P  K  Y  L  N  F  L  M  :  G  L  V  D  S  D  T  L  P  L  N  V  S  R  E  M  L  Q  Q  H  S  S  L  K  T  I  K  K  K  L  I  R  K  A  L  D  M  I  R  K  L  A  E  E  D  P  D  E  T  N  D  K  E  K  R   : D  V  E  E  S  S  D  E  N  E  K  K  G  Q  Y  A  K  F  W  N  E  F  G  K  S  I  K  L  G  I  I  E  D  A  T  N  R  N  R  L  A  K  L  L  R  F  E  T :   T  K  S  D  G  K  L  T  S  L  D  Q  Y  I  S  R  M  K  S  S  Q  K  D  I  F  Y  I  T  G  A  S  K  E  Q  L  E  K  S  P  F  L  E  R  L  N  K  K  D  Y  E  :  V  I  F  F  T  D  P  V  D  E  Y  L  M  Q  Y  L  M  D  Y  E  D  K  K  F  Q  N  V  S  K  E  G  L  K  L  K  D  S  K  T  K  E  L  K  E  S  F  K  G  L  T  K  W  W  K  N  T  L  A  S  D  N  V  E  D  V  K  I  S  S  R  L  A  D  T  P  C  V  V  V  T  S  K  Y  G  W  S  A  Y  M  E  K  I  M  H  S  Q  T  L  S  D  A  S  K  Q  A  Y  M  R  G  K  R  V  L  E  I  N  P  R  H  P  I  I  K  A  L  R  E  R  V  V  T  D  P  E  :  D  E  S  V  K  L  T  A  K  L  I  Y  Q  T  A  L  M  E  S  G  F  D  L  S  D  P  K  D  F  A  S  H  I  Y  S  S  V  K  S  S  L  N  I  S  P  D  A  T  V  E  E  E  E  D  E  A  E  E  P  E  T  E  T  K  A  E  E  E  S  A  S  D  E  S  E  L  K  D  E  L  *  I  V  S  *  D  M  F  L  F  P  G  N  N  T  L  L  W  Y  V  S  Q  H  V  K  N  V  G  I  V  *  F  I  V  L  N  L  K  R  I  L  S  V  L  H  F  R  C  F  S  V  *  V  C  R  S  V  *  Q  I  W  K  V  L  F  F  P  N  W  N  W  *  K  L  *  F  F  *  G  N  Q  L  L  T  C  C  N  C  F  S  F  *  I  L  L  E  K  *  V  V  L  E  H  D  L  I  V  S  N  Q  K  </second_frame>
            <third_frame>   H  S  T  L  N  A  A  C  K  I  I  G  R  R  P  L  K  L  K  F  R  *  R  R  Q  *  G  S  G  R  S  R  S  S  C  F  C  Y  A  *  F  T  L  F  Q  I  K  :  V  E  R  Y  R  Q  M  Q  K  L  I  L  M  H  Q  *  I  H  Q  R  L  R  R  S  L  V  L  F  L  M  V  Y  R  L  I  L  M  W  L  R   : G  K  L  S  L  C  Q  G  K  L  S  E  L  V  R  R  S  L  S  S  R  L  R  S  L  V  L  W  T  S  L  S  T  L  S  T  V  T  R  T  S  F  *  G  S  *  F  P  M  L  L  M :   H  W  T  R  L  G  S  L  H  S  L  T  R  R  F  L  V  R  V  I  I  L  S  L  R  F  R :   L  N  L  I  K  K  R  K  F  F  P  F  A  T  E  V  L  E  *  P  R  R  I  *  E  R  I  W  E  P  *  L  N  L  E  L  Q  :  L  L  S  R  R  C  R  Q  V  V  T  L  T  *  L  D  N  L  V  L  G  F  T  L  C  I  L  W  L  T  M  L  K  S  S  A  S  T  M  T  T  N   : N  M  S  G  N  Q  R  Q  M  G  H  L  P  F  L  K  I  H  G  M  N  L  L  A  V  E  L  K  L  D  C  I  *  E  M  K  Q  G  N  I  W  M  S  S  N  *  R :   N  W  S  R  N  I  L  N  S  S  T  S  L  *  I  Y  G  Q  A  K  R  L  R  R  K  F  L  L  M  R  T  S  Q  L  M  K  R  K  H  :  L  K  A  L  P  L  R  K  R  E  K  K  K  M  Q  R  R  P  K  M  R  R  S  L  K  L  R  Q  *  R  K  P  H  M  S  G  S  F  *  M  T  *  K  L  Y  G  F  E  A  Q  R  K  L  Q  M  K  N  I  I  S  S  I  T  L  W  Q  R :   T  S  V  K  I  N  P  W  R  G  V  T  S  M  L  K  V  M  *  S  S  R  L  F  Y  S  S  L  L  K  P  L  M  I  C  M  R  A  T  T  T  Q  S  N  P  T  *  S  Y  M  S  D  G  F  S  S  Q  M  N  L  M  N  C  C  P  S  T  *  I  S  *  W :   V  L  L  I  L  T  P  Y  P  S  M  S  Q  E  K  C  F  S  S  T  A  V  *  R  Q  L  R  K  N  S  S  V  R  P  L  T  *  S  A  N  L  P  K  R  I  Q  M  K  L  M  T  R  R  R  E  :  M  L  K  S  P  V  M  K  M  R  R  K  V  N  M  P  N  S  G  M  N  L  E  S  R  L  S  L  V  L  *  K  T  Q  L  T  E  T  A  *  L  N  F  F  D  L  R   : Q  P  N  Q  M  V  N  *  L  H  L  T  N  T  S  Q  E  *  N  Q  V  K  R  I  S  S  T  S  P  V  P  A  K  N  S  W  R  N  L  P  S  L  K  D  L  I  R  K  T  M  R :   L  Y  S  S  P  I  Q  *  M  N  T  S  C  N  I  L  W  T  M  K  T  K  S  S  R  M  C  L  K  R  D  *  S  L  R  I  R  K  P  K  S  S  R  S  H  S  R  G  *  L  S  G  G  R  I  L  L  L  V  T  T  L  K  M  S  R  *  A  A  V  W  P  T  P  L  V  L  W  *  H  Q  N  T  D  G  V  H  I  W  R  K  *  C  I  H  K  P  C  Q  M  Q  A  S  K  H  T  C  V  V  K  G  C  L  K  S  I  L  G  T  Q  L  S  R  H  F  G  R  E  *  *  Q  T  Q  R :   T  R  V  *  S  *  Q  Q  N  L  Y  T  K  Q  L  *  W  R  V  A  S  I  *  V  I  Q  R  I  L  P  P  T  S  T  A  Q  *  R  A  V  *  T  L  A  L  M  Q  Q  L  R  K  K  K  T  K  L  K  N  L  R  L  K  P  R  Q  K  R  S  L  H  R  M  S  L  N  S  R  M  S  Y  R  *  C  P  K  I  C  S  F  F  P  E  T  T  R  C  C  G  M  F  L  N  T  *  R  M  *  E  *  F  S  S  *  S  *  T  *  K  E  F  C  Q  S  C  I  F  V  V  L  V  Y  E  F  V  V  P  C  N  K  S  G  R  S  C  F  F  L  I  G  T  G  K  S  S  S  F  S  K  E  I  N  F  *  R  V  A  I  V  F  L  S  K  F  Y  W  K  N  K  *  C  L  S  M  I  *  *  C  Q  I  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97132" stop="97018"/>
                    <exon start="96521" stop="96401"/>
                    <exon start="96310" stop="96157"/>
                    <exon start="96077" stop="95997"/>
                    <exon start="95895" stop="95784"/>
                    <exon start="95701" stop="95575"/>
                    <exon start="95490" stop="95352"/>
                    <exon start="94610" stop="94493"/>
                    <exon start="94201" stop="94002"/>
                    <exon start="93898" stop="93683"/>
                    <exon start="93576" stop="93411"/>
                    <exon start="93330" stop="93189"/>
                    <exon start="93101" stop="92951"/>
                    <exon start="92711" stop="92310"/>
                    <exon start="92224" stop="91982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2484</number_coding_nucleotides>
                  <number_encoded_amino_acids>828</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHRPATSKVEIPVTETMRKWKIPFVLFLLCLIYLVPDQGRKIQANAEADSDAPVDPPKVEEKFGAVPNGLSTDSDVAKREAESMSRKTLRASAEKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGVGMTKEDLRKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLDELKLKELVKKYSEFINFPINLWASKEVEKEVPADEDESVDEEETSESTSSEEEGEEEDAEKAEDEKKPKTKTVKETTYEWELLNDMKAIWLRSPKEVTDEEYNKFYHSLAKDFSEDKPMAWSHFNAEGDVEFKAVLFIPPKAPHDLYESYYNTKQSNLKLYVRRVFISDEFNELLPKYLNFLMGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKLAEEDPDETNDKEKRDVEESSDENEKKGQYAKFWNEFGKSIKLGIIEDATNRNRLAKLLRFETTKSDGKLTSLDQYISRMKSSQKDIFYITGASKEQLEKSPFLERLNKKDYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLKDSKTKELKESFKGLTKWWKNTLASDNVEDVKISSRLADTPCVVVTSKYGWSAYMEKIMHSQTLSDASKQAYMRGKRVLEINPRHPIIKALRERVVTDPEDESVKLTAKLIYQTALMESGFDLSDPKDFASHIYSSVKSSLNISPDATVEEEEDEAEEPETETKAEEESASDESELKDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97160" e_stop="97018"/>
            <exon e_start="96521" e_stop="96401"/>
            <exon e_start="96310" e_stop="96157"/>
            <exon e_start="96077" e_stop="95997"/>
            <exon e_start="95895" e_stop="95784"/>
            <exon e_start="95701" e_stop="95575"/>
            <exon e_start="95490" e_stop="95155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97160" e_stop="97018" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96521" e_stop="96401" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96310" e_stop="96157" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.889" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96077" e_stop="95997" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95895" e_stop="95784" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="95701" e_stop="95575" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="0.952">
            <gDNA_exon_boundary e_start="95490" e_stop="95155" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97160" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97156" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97148" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97143" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97143" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97143" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97140" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97137" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97134" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97132" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97132" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97125" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97113" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="96071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96480" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96480" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96218" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96190" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622655" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAG : GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG : GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT : GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG : ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG : CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA : ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTG</gDNA_template>
            <first_frame> N  T  L  L  *  T  L  L  V  K  S  S  A  G  D  L  *  S  *  N  S  G  D  G  D  N  E  E  V  E  D  P  V  R  P  V  S  V  M  P  D  L  P  C  S  R  S  R :   S  K  D  T  G  K  C  R  S  *  F  *  C  T  S  R  S  T  K  G  *  G  E  V  W  C  C  S  *  W  F  I  D  *  F  *  C  G  *  E  :  G  S  *  V  Y  V  K  E  N  S  P  S  *  C  G  E  V  *  V  P  G  *  G  L  S  S  Y  G  H  P  Y  Q  L  S  L  Q  *  Q  G  H  L  F  E  G  A  D  F  Q  C  F  *   : C  T  G  Q  D  *  V  P  C  T  H  *  Q  G  G  S  W  *  G  *  *  Y  *  A  *  D  S   : D  *  T  *  *  R  K  E  N  S  F  H  S  R  Q  R  C  W  N  D  Q  G  G  S  K  K  E  F  G  N  H  S  *  I  W  N  F  S :   F  C  R  E  D  A  D  K  W  *  P  *  P  D  W  T  I  W  C  W  V  L  L  C  V  S  C  G  *  L  C  *  S  H  Q  Q  A  Q  *  R  Q  T  :  I  C  L  G  I  K  G  R  W  G  I  C  H  F  *  R  Y  M  E  *  T  S  W  P  W  N  *  N  *  T  A  S  K  R  *  S  R  G  I  F  G  *  A  Q  T  K  G  E  *  T  E  M  H  T  E  V  K  F  L  H  I  L  L  T  N  G  Y  M  S  *  F  S  S  F  M  S  H  H  S  S  I  T  P  L  L  S  F  V  M  A  L  V  S  G  I  V  G  H  E  F  I  Y  C  C  N  N  W  I  *  I  I  L </first_frame>
            <second_frame>  T  L  Y  F  E  R  C  L  *  N  H  R  P  A  T  S  K  V  E  I  P  V  T  E  T  M  R  K  W  K  I  P  F  V  L  F  L  L  C  L  I  Y  L  V  P  D  Q   : G  R  K  I  Q  A  N  A  E  A  D  S  D  A  P  V  D  P  P  K  V  E  E  K  F  G  A  V  P  N  G  L  S  T  D  S  D  V  A  K  R :   E  A  E  S  M  S  R  K  T  L  R  A  S  A  E  K  F  E  F  Q  A  E  V  S  R  L  M  D  I  L  I  N  S  L  Y  S  N  K  D  I  F  L  R  E  L  I  S  N  A  S  D  :  A  L  D  K  I  R  F  L  A  L  T  D  K  E  V  L  G  E  G  D  N  T  K  L  E  I  Q  :  I  K  L  D  K  E  K  K  I  L  S  I  R  D  R  G  V  G  M  T  K  E  D  L  R  K  N  L  G  T  I  A  K  S  G  T  S   : A  F  V  E  K  M  Q  T  S  G  D  L  N  L  I  G  Q  F  G  V  G  F  Y  S  V  Y  L  V  A  D  Y  V  E  V  I  S  K  H  N  D  D  K  Q :   Y  V  W  E  S  K  A  D  G  A  F  A  I  S  E  D  T  W  N  E  P  L  G  R  G  T  E  I  R  L  H  L  R  D  E  A  G  E  Y  L  D  E  L  K  L  K  V  S  R  Q  R  C  I  L  K  *  N  F  S  I  Y  C  *  R  M  G  T  C  H  S  F  H  L  L  *  V  I  T  H  Q  *  P  P  Y  Y  L  L  *  W  L  L  Y  Q  E  *  *  V  M  N  L  Y  T  A  V  I  I  G  Y  K  *  S   </second_frame>
            <third_frame>   H  S  T  L  N  A  A  C  K  I  I  G  R  R  P  L  K  L  K  F  R  *  R  R  Q  *  G  S  G  R  S  R  S  S  C  F  C  Y  A  *  F  T  L  F  Q  I  K  :  V  E  R  Y  R  Q  M  Q  K  L  I  L  M  H  Q  *  I  H  Q  R  L  R  R  S  L  V  L  F  L  M  V  Y  R  L  I  L  M  W  L  R   : G  K  L  S  L  C  Q  G  K  L  S  E  L  V  R  R  S  L  S  S  R  L  R  S  L  V  L  W  T  S  L  S  T  L  S  T  V  T  R  T  S  F  *  G  S  *  F  P  M  L  L  M :   H  W  T  R  L  G  S  L  H  S  L  T  R  R  F  L  V  R  V  I  I  L  S  L  R  F  R :   L  N  L  I  K  K  R  K  F  F  P  F  A  T  E  V  L  E  *  P  R  R  I  *  E  R  I  W  E  P  *  L  N  L  E  L  Q  :  L  L  S  R  R  C  R  Q  V  V  T  L  T  *  L  D  N  L  V  L  G  F  T  L  C  I  L  W  L  T  M  L  K  S  S  A  S  T  M  T  T  N   : N  M  S  G  N  Q  R  Q  M  G  H  L  P  F  L  K  I  H  G  M  N  L  L  A  V  E  L  K  L  D  C  I  *  E  M  K  Q  G  N  I  W  M  S  S  N  *  R  *  V  D  R  D  A  Y  *  S  K  I  S  P  Y  I  V  N  E  W  V  H  V  I  V  F  I  F  Y  E  S  S  L  I  N  N  P  L  I  I  F  C  D  G  S  C  I  R  N  S  R  S  *  I  Y  I  L  L  *  *  L  D  I  N  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97132" stop="97018"/>
                    <exon start="96521" stop="96401"/>
                    <exon start="96310" stop="96157"/>
                    <exon start="96077" stop="95997"/>
                    <exon start="95895" stop="95784"/>
                    <exon start="95701" stop="95575"/>
                    <exon start="95490" stop="95322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHRPATSKVEIPVTETMRKWKIPFVLFLLCLIYLVPDQGRKIQANAEADSDAPVDPPKVEEKFGAVPNGLSTDSDVAKREAESMSRKTLRASAEKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGVGMTKEDLRKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLDELKLKVSRQRCILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="92232" e_stop="91651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92232" e_stop="91651" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92232" stop="91744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92225" stop="91760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92150" stop="91734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92085" stop="91732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92049" stop="91732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92005" stop="91738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92000" stop="91651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91896" stop="91659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATGATTTGATAGTGTCAAATCAAAAAA</gDNA_template>
            <first_frame> L  Y  R  T  R  V  *  S  *  Q  Q  N  L  Y  T  K  Q  L  *  W  R  V  A  S  I  *  V  I  Q  R  I  L  P  P  T  S  T  A  Q  *  R  A  V  *  T  L  A  L  M  Q  Q  L  R  K  K  K  T  K  L  K  N  L  R  L  K  P  R  Q  K  R  S  L  H  R  M  S  L  N  S  R  M  S  Y  R  *  C  P  K  I  C  S  F  F  P  E  T  T  R  C  C  G  M  F  L  N  T  *  R  M  *  E  *  F  S  S  *  S  *  T  *  K  E  F  C  Q  S  C  I  F  V  V  L  V  Y  E  F  V  V  P  C  N  K  S  G  R  S  C  F  F  L  I  G  T  G  K  S  S  S  F  S  K  E  I  N  F  *  R  V  A  I  V  F  L  S  K  F  Y  W  K  N  K  *  C  L  S  M  I  *  *  C  Q  I  K  K </first_frame>
            <second_frame>  F  T  G  R  E  C  E  V  D  S  K  T  Y  I  P  N  S  F  N  G  E  W  L  R  S  E  *  S  K  G  F  C  L  P  H  L  Q  L  S  K  E  Q  S  K  H  *  P  *  C  N  S  *  G  R  R  R  R  S  *  R  T  *  D  *  N  Q  G  R  R  G  V  C  I  G  *  V  *  T  Q  G  *  A  I  D  S  V  L  R  Y  V  P  F  S  R  K  Q  H  V  V  V  V  C  F  S  T  R  E  E  C  R  N  S  L  V  H  S  L  K  L  K  K  N  F  V  S  L  A  F  S  L  F  *  C  M  S  L  S  F  R  V  T  N  L  E  G  L  V  F  S  *  L  E  L  V  K  A  L  V  F  L  R  K  S  T  F  D  V  L  Q  L  F  F  F  L  N  F  T  G  K  I  S  S  A  *  A  *  F  D  S  V  K  S  K   </second_frame>
            <third_frame>   L  Q  D  E  S  V  K  L  T  A  K  L  I  Y  Q  T  A  L  M  E  S  G  F  D  L  S  D  P  K  D  F  A  S  H  I  Y  S  S  V  K  S  S  L  N  I  S  P  D  A  T  V  E  E  E  E  D  E  A  E  E  P  E  T  E  T  K  A  E  E  E  S  A  S  D  E  S  E  L  K  D  E  L  *  I  V  S  *  D  M  F  L  F  P  G  N  N  T  L  L  W  Y  V  S  Q  H  V  K  N  V  G  I  V  *  F  I  V  L  N  L  K  R  I  L  S  V  L  H  F  R  C  F  S  V  *  V  C  R  S  V  *  Q  I  W  K  V  L  F  F  P  N  W  N  W  *  K  L  *  F  F  *  G  N  Q  L  L  T  C  C  N  C  F  S  F  *  I  L  L  E  K  *  V  V  L  E  H  D  L  I  V  S  N  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92230" stop="91982"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQDESVKLTAKLIYQTALMESGFDLSDPKDFASHIYSSVKSSLNISPDATVEEEEDEAEEPETETKAEEESASDESELKDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 277 chains have been computed
$ 
$ memory statistics:
$ 526568 bytes spliced alignments in total
$ 243 spliced alignments have been stored
$ 2166 bytes was the average size of a spliced alignment
$ 30272 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 2018 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 293 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 20:09:31
-->
