<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:30:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335799" ref_strand="+" ref_description="SGN-U335799        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cryptochrome 1 apoprotein (CRY1) / flavin-type blue-light photoreceptor (HY4), contains Pfam PF03441: FAD binding domain of DNA photolyase; member of Pfam PF00875: deoxyribodipyrimidine photolyase superfamily; 99% identical to Cryptochrome 1 apoprotein (Blue light photoreceptor) (flavin-type blue-light photoreceptor) (SP:Q43125) (Arabidopsis thaliana) | chr4:5724131-5727250 FORWARD | Aliases: T3H13.14, T3H13_14(evalue: 0, score=1028) genbank/nr: gi|8101442|gb|AAF72555.1| cryptochrome 1 [Lycopersicon esculentum] >gi|5524201|gb|AAD44161.1| cryptochrome 1 [Lycopersicon esculentum] (evalue: 0, score=1341)">
      <seq>ataaccaatcaccctcaatctcactttctcctccctctttctctggagaggtttgtttttttgggtggacaatgcctatagtaacttcacaagaatagcatctcatcattcatcaaagaataacatttggggtttgttaaagttaggttctttactagaatttgcctaaaaaaaatcatctttgtaatctttatctcctcagtgaaagctacagggaacagtcaaagtatagataagattaaccccaatatacttctgtctaagaaagactcaataacatggtgtttacatagtaagagagaaaaatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatgatcctatttcacttgtgagagatcatcgcacaaaagaaatcttaacagctcaaggtatatcagtgcgttcctttaatgctgatttgctctatgaaccatgggaagttaatgacgatgaaggtcgcccgttcacaacattttctgctttttgggagaaatgccttagcatgccttatgatccagaagctccacttcttcctcccaaaaggattatatctggtgatgcatcaagatgcccttcagacaacttggtatttgaagatgaatcagagaaaggaagcaatgcacttcttgctcgggcatggtcacctggctggagtaatgctgataaagcactaactactttcgttaatggaccattacttgagtactcgcagaaccgtcggaaagctgatagtgcaacaacatcctttctatctccacatttacattttggggaagtcagtgttcgtaaggtattccattttgttcgcatcaagcaagttctctgggccaatgaaggaaataaagctggtgaagagagtgttaatttgttccttaagtccattgggctgagggagtactcaagatacatgagttttaatcatccttatagccatgaaaggccccttcttggtcacctaaggtacttcccatgggtagtggatgaaggctactttaaggcatggagacaaggtagaacaggttatcctttggttgatgctggtatgagagagttatgggcaactggttggcttcatgatcgtatccgagtcgtggtatctagtttctttgtgaaggttctgcagcttccatggaggtgggggatgaagtatttttgggacacattgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtaccctacctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgaccctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatggatacaccatccatggaatgcaccagaatctgtgcttgaagctgctggcattgagctgggttccaattatcctcttcctatagttgaaattgattcagcaaaagttagactagaacaagccctatcacaaatgtggcagaatgatgcagctgcaagagctgcgattgagaatggtatggaagaaggacatggtgactctgctgactccccaatagcatttcctcaggccatgcatatggaaatggaccatgaaccagtcaggaacaaccctgtaatagttactgttcgacgctatgaagatcaaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactccgtggacattaggaattcagttgtggaaagtagggcagaagttccaacagacatcaatgtagctgaagttcataggagagacacgcgtgaccaagccgtcatgcaaactgctcgaaccaatgctaccccacattttaattttgcggtaggtaggaggaattctgaagattcaacagcagaatcttccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtagtaactattcggaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagttacgatagcaacaaggcggagaagcaagtggctaatacagacatttggctcagcacatttagtacagcattcatctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcgtctggattttcatcctcatctgtcgggcatccccatttacctattataccatatatgtgtctctgctgtatagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgccttttgtttttccttctcttttctgctacttacattttgatggcaataacgattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactctgtttgacggatgtacatgtggtttaagcagcttcatctcatatttttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6320" stop="641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6020" g_stop="5362" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4747" g_stop="4529" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="878" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4528" i_stop="3968" i_length="561">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3967" g_stop="3261" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="1585" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2662" g_stop="1866" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1586" r_stop="2382" r_length="797" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1411" g_stop="942" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="2383" r_stop="2852" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2853" polyA_stop="2868"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U335799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2852</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6020" e_stop="5362"/>
          <exon e_start="4747" e_stop="4529"/>
          <exon e_start="3967" e_stop="3261"/>
          <exon e_start="2662" e_stop="1866"/>
          <exon e_start="1411" e_stop="942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTCCTTTTTTTGGCTTTCCTTTGTAATCATTTTGTTTGATTTGATTATTCTTAATGTTGTTTCAAAAGTTATTAGTACTATATTGTTGGGATGGCTTAATTGGGATTGGTGCTTCCTATATGTCCTTTTAAGAATAAGATATTGAGTTGTCTTCTGGTAAACATAATAAATTATTAGCATGTGTCTTCCTCATATAACTAAAGAATTTTAAGTGCAATACTTTTTGCTATGCTCAATCCTCAGTGCTTGTAGCATTCTCTGGCTACTAATTTGTTTAGTGCCTGAATTAGAACTACAGTAATCTGGATTTGTTGTACTAAACATATTCCATATCCTTATTATTTGATTAATAGAAGCAGAAAGGGTGTTGCTTGACATTTGATCTGATCATGGTTGAATGGATAATTGCTAATAGATATGCATGGCTTTTATTTTAAGCATCTCTTTACAGTACAAGGATTTATAAGATGCATAGTTTTGCTCAGCCAATTTCATCCACTACCTTATCCTGACCAACACCTTTGACTTCTTTGGCTTTAGATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCCAAAAGGATTATATCTGGTTTGTTCTCATCTGAGCTTCTCCATATCTTGTTGGCTTTCTGGATAAATTTCTATTATTTTTTGTACATATTTTTGTAACATAAGGTGCTTAGGGTAGAAGGTTAGTAGGGCATGAAGGGTCTTTCAGAAACAACCTCTCTACCTCCACAATGTAGGGGTAATATCCGCGTATATTCTACCGCCGCTTGTAGGATTATACTGGGTATGTTGTTGTCGTGCTTGGCTTAGTGTTACGTTCCACCAATGATGCACACAAATTAGGAGATCTCCCTCCAGGTAATAGATATATTAATTGTCAGATAAAAATAATGTCATTGCACCGTAATGAACGTGTTGCTACACTTTAAGCTCGGAGATCACTACATGGTGTATAATGTGAATGTTGCAGGTATTCAAGTCCTTCAAAAGTGGAAAGGTGATAATGAACATTTAGATGTTTGAGCTGTCACTAACAAGCTAAGGGCTAAAACAAATTCCTAGGATGGTGTTAATGTACTTATAGGAGCACTGGTTTAGATTTTAATTTAGTTTTTACATGGATTCATGTGCAAACTTTCAGGTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGCTGGAGTAATGCTGATAAAGCACTAACTACTTTCGTTAATGGACCATTACTTGAGTACTCGCAGAACCGTCGGAAAGCTGATAGTGCAACAACATCCTTTCTATCTCCACATTTACATTTTGGGGAAGTCAGTGTTCGTAAGGTATTCCATTTTGTTCGCATCAAGCAAGTTCTCTGGGCCAATGAAGGAAATAAAGCTGGTGAAGAGAGTGTTAATTTGTTCCTTAAGTCCATTGGGCTGAGGGAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAGGTATGTTAGGGTAATCTTTGATGAGAATCTCTTCTTTCAATTGGAATTTTTCATAACTTCATAGTTGAAATTCCTTTTCTTCTATTTCTCTAACATAGTAGAGTTGCTGGAACACCAATTATAGACTACTACCGTAATTTTTTTTAATAACTTTACGACTATTCTACACTTCGAATGGTTATAGCCTTCCATGTTGCGGTAAGTGTTATTTTCAGATTGTAAGTTAGTTTCCAGGCACTGACTTGCTAGTAGACATTGCATGAACATCTCATGGGCCTCAATCTTCTTACAGAAAGTGCTAAAGCTTAAGATGGAATGTGTGTGTGAATGCCTAATTGCAAATTCTGCTTCTTTTATATCCTGAGATATTACTTATTAGTACAGTGACTGTGAGCTTCTTTTGGTATTAAATTGATATGCGAGTCTTTTCAATACAAGAAACCCTTCCTTCTGTTTCTCTTGTTTTTTCATGTAAAACAAAAGTGAGGCTGCAGATTTTGCTATATATATCCCTTTTTCCGTTTCTGTTCTTGTTTCTTCATGTGAATTTTCTTGGTAAAGGCTGAATAGTTATTTGAACCTGTTCTCTTTCTGGCAGTTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTT</genome_strand>
        <mrna_strand>ATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCCAAAAGGATTATATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGCTGGAGTAATGCTGATAAAGCACTAACTACTTTCGTTAATGGACCATTACTTGAGTACTCGCAGAACCGTCGGAAAGCTGATAGTGCAACAACATCCTTTCTATCTCCACATTTACATTTTGGGGAAGTCAGTGTTCGTAAGGTATTCCATTTTGTTCGCATCAAGCAAGTTCTCTGGGCCAATGAAGGAAATAAAGCTGGTGAAGAGAGTGTTAATTTGTTCCTTAAGTCCATTGGGCTGAGGGAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316724" ref_strand="+" ref_description="SGN-U316724        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | cryptochrome 1 apoprotein (CRY1) / flavin-type blue-light photoreceptor (HY4), contains Pfam PF03441: FAD binding domain of DNA photolyase; member of Pfam PF00875: deoxyribodipyrimidine photolyase superfamily; 99% identical to Cryptochrome 1 apoprotein (Blue light photoreceptor) (flavin-type blue-light photoreceptor) (SP:Q43125) (Arabidopsis thaliana) | chr4:5724131-5727250 FORWARD | Aliases: T3H13.14, T3H13_14(evalue: 4e-152, score=535) genbank/nr: gi|8101442|gb|AAF72555.1| cryptochrome 1 [Lycopersicon esculentum] >gi|5524201|gb|AAD44161.1| cryptochrome 1 [Lycopersicon esculentum] (evalue: 0, score=782)">
      <seq>gagtactcaagatacatgagttttaatcatccttatagccatgaaaggccccttcttggtcacctaaggtacttcccatgggtagtggatgaaggctactttaaggcatggagacaaggtagaacaggttatcctttggttgatgctggtatgagagagttatgggcaactggttggcttcatgatcgtatccgagtcgtggtatctagtttctttgtgaaggttctgcagcttccatggaggtgggggatgaagtatttttgggacacattgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtaccctacctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgaccctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatggatacaccatccatggaatgcaccagaatctgtgcttgaagctgctggcattgagctgggttccaattatcctcttcctatagttgaaattgattcagcaaaagttagactagaacaagccctatcacaaatgtggcagaatgatgcagctgcaagagctgcgattgagaatggtatggaagaaggacatggtgactctgctgactccccaatagcatttcctcaggccatgcatatggaaatggaccatgaaccagtcaggaacaaccctgtaatagttactgttcgacgctatgaagatcaaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactccgtggacattaggaattcagttgtggaaagtagggcagaagttccaacagacatcaatgtagctgaagttcataggagagacacgcgtgaccaagccgtcatgcaaactgctcgaaccaatgctaccccacattttaattttgcggtaggtaggaggaattctgaagattcaacagcagaatcttccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtagtaactattcggaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagttacgatagcaacaaggcggagaagcaagtggctaatacagacatttggctcagcacatttagtacagcattcatctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcgtctggattttcatcctcatctgtcgggcatccccatttacctattataccatatatgtgtctctgctgtatagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgccttttttttttccttctcttttctgctacttacattttgatggcaataacgattatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="3929" stop="740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3629" g_stop="3261" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2662" g_stop="1866" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="1166" r_length="797" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1411" g_stop="1040" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1167" r_stop="1538" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U316724" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3629" e_stop="3261"/>
          <exon e_start="2662" e_stop="1866"/>
          <exon e_start="1411" e_stop="1040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAGGTATGTTAGGGTAATCTTTGATGAGAATCTCTTCTTTCAATTGGAATTTTTCATAACTTCATAGTTGAAATTCCTTTTCTTCTATTTCTCTAACATAGTAGAGTTGCTGGAACACCAATTATAGACTACTACCGTAATTTTTTTTAATAACTTTACGACTATTCTACACTTCGAATGGTTATAGCCTTCCATGTTGCGGTAAGTGTTATTTTCAGATTGTAAGTTAGTTTCCAGGCACTGACTTGCTAGTAGACATTGCATGAACATCTCATGGGCCTCAATCTTCTTACAGAAAGTGCTAAAGCTTAAGATGGAATGTGTGTGTGAATGCCTAATTGCAAATTCTGCTTCTTTTATATCCTGAGATATTACTTATTAGTACAGTGACTGTGAGCTTCTTTTGGTATTAAATTGATATGCGAGTCTTTTCAATACAAGAAACCCTTCCTTCTGTTTCTCTTGTTTTTTCATGTAAAACAAAAGTGAGGCTGCAGATTTTGCTATATATATCCCTTTTTCCGTTTCTGTTCTTGTTTCTTCATGTGAATTTTCTTGGTAAAGGCTGAATAGTTATTTGAACCTGTTCTCTTTCTGGCAGTTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGA</genome_strand>
        <mrna_strand>GAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTTTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316725" ref_strand="+" ref_description="SGN-U316725        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | cryptochrome 1 apoprotein (CRY1) / flavin-type blue-light photoreceptor (HY4), contains Pfam PF03441: FAD binding domain of DNA photolyase; member of Pfam PF00875: deoxyribodipyrimidine photolyase superfamily; 99% identical to Cryptochrome 1 apoprotein (Blue light photoreceptor) (flavin-type blue-light photoreceptor) (SP:Q43125) (Arabidopsis thaliana) | chr4:5724131-5727250 FORWARD | Aliases: T3H13.14, T3H13_14(evalue: 4e-40, score=161) genbank/nr: gi|8101442|gb|AAF72555.1| cryptochrome 1 [Lycopersicon esculentum] >gi|5524201|gb|AAD44161.1| cryptochrome 1 [Lycopersicon esculentum] (evalue: 2e-45, score=184)">
      <seq>ttctctagagaggtttgtttttttgggtggacaatgcctatagtaacttcacaagaatagcatctcatcattcatcaaagaataacatttggggtttgttaaagttaggttctttactagaatttgcctaaaaaaaatcatctttgtaatctttatctcctcagtgaaagctacagggaacagtcaaagtatagataagattaaccccaatatacttctgtctaagaaagactcaataacatggtgtttacatagaaagggagaaaaatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatggttagtacttgtttccatttttttctgtggttttcttgcttctttaaataaaagatagagcaccactgttttacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6282" stop="4985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5982" g_stop="5285" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="709"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U316725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5982" e_stop="5285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</genome_strand>
        <mrna_strand>TTCTCTAGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGAAAGGGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327000" ref_strand="+" ref_description="SGN-U327000        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF03966: Protein of unknown function (DUF343) | chr1:7865482-7866128 FORWARD | Aliases: T16E15.11, T16E15_11(evalue: 1e-32, score=136) genbank/nr: Protein(evalue: 3e-32, score=141)">
      <seq>aatcggccgaattggagaagtaagagagaggactgaaaatacaatttctccggcgccgtctaaggcctataaaatcggaagttcatcgcattagcaaattcatcccaacttcaaaatgaggttgttaactcacaacatgttatcatccaacatcaagggagtcgcaaatggattcccgttgaagatcgaggttgtgaaagtggtagagaaagaggttgatttcaatatcgattttctcaagaacatgttccataaggttgaatggaaggcactggcggaagcttctagaaccatgggttacgctgaactgcctgaaaatgttgatgctgctatggtaaactcagatgattttcttcataagtttcatcatgcccttctcgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcaataaaggcattcccaatatgcttcttcatgaagacgaggtctgattagttttttttttctttttttgggtattgatatgttttggtttggaaatggggattagggttcttgattatagggtttaaggggtttgttatgatataccattttgaattgtaatgctattattggaaaacactgtcgatattatggagtaattaccaaaacttctttgttgcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36515" stop="37883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36814" g_stop="36928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37581" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="656" r_length="541" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="719"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-U327000" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36814" e_stop="36928"/>
          <exon e_start="37041" e_stop="37581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAGAGCAGCTCGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAA................................................................................................................ATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTCAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAAACACTGTCGATATTATGGAGTAATTACCAAAACTTCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320132" ref_strand="+" ref_description="SGN-U320132        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:12685178-12687710 FORWARD | Aliases: F12K21.3(evalue: 9e-174, score=607) genbank/nr: gi|22329938|ref|NP_174722.2| expressed protein [Arabidopsis thaliana] gi|18086347|gb|AAL57636.1| At1g34630/F12K21.3 [Arabidopsis thaliana] gi|22655322|gb|AAM98253.1| At1g34630/F12K21.3 [Arabidopsis thaliana](evalue: 7e-172, score=607)">
      <seq>tatacttccacttgcccttcgataatctcagagtttcatccggaaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaacttgggctcatggagacattttccttatgtgtctatcctcttcacagatcctgtcagcttacatattgaagcaagatagtctgcatccatcttacaaatcctttctcaacaaacatggtggcaaagctttggttatcctgcagggtgtgaaagacctggcatgtgggaactctgtaatgaatttggaagcaatagagaatcactacaagtccaatggtattaacatcaaactggatccacaaatgaaagtaccctgctcgatagtacatgagaatcaaggatgtggtgcgcatttcatttcatttctaattcaagcctacaagagagctctgccggtttaccttccagtttatttagttcctgcactcattgtacatcgtcaaggcatcttgaaaagacctaacacaattttggcgaagggtctccttggtacagcaaggtctagtctatttctctccatgtattgttcgtctgcctggttgtggacatgctttctcttcaggctgttcaagaggtgtaacatccccatggtggcactgggaacgttccctactggtctggccctggcaatcgagaagaaaagcagaaggatagagatttcactctattgtcttgctcgggcacttgagagtttcgtcacgtgcatggctgatgttggttatttgcctcagtctgaaaaattgaagaggggtgatgttgtgatctttagcatggcaactgcaattatcatgcattgttatgctatggagagggatgtttttaaatccaagtatttgaatgttcttgattgggtgtttggtgtgcctcttcccccctatgataccactcctcgcaagaaatggcgttcctcatccatataaagaaccgcgagatataattgtacacaatgcatgtcgcaaaaaaataatttaactttgtacaccacaatagtcatagaactaatctaccttcatgcaaatgtagaatgatttatgatctgtttagttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43941" stop="37746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43641" g_stop="43271" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="512" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42499" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="737" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40699" g_stop="40492" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="945" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40491" i_stop="39308" i_length="1184">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39307" g_stop="39171" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="946" r_stop="1082" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38896" g_stop="38816" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1163" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38636" g_stop="38570" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1164" r_stop="1230" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38569" i_stop="38490" i_length="80">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38489" g_stop="38046" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1674" r_length="444" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U320132" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43641" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42499"/>
          <exon e_start="40699" e_stop="40492"/>
          <exon e_start="39307" e_stop="39171"/>
          <exon e_start="38896" e_stop="38816"/>
          <exon e_start="38636" e_stop="38570"/>
          <exon e_start="38489" e_stop="38046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTCCACTTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCTGTAAGCATCGGTTTTTCTCCTTTTGTGGGACTTAATTTCATATATAAATATACTGAGTAATGATATCCTTCCTTTAATTACAAGCCATATTTCTTAAGCTTTATATGTATAATACATTGTTATTTTTACTACACAATCTCGTTTCGTTCTTGACTATGTAAAACTGCAATTTTATGCATTTTTAGTGCTGCATTGTTGATAAACTGCTATGTCATGAACAAGTAAACGTTTCTTCCTTTGAACATGATGTAAGTTGCGGTGCTTAGAAGTTGAGATTAACCATGCTTGGCTCTAAGCTGATAAATCATATTGATTTGGCTTTGTATTGAAGTTGGCCAAGAAAGAGGTACTTTCCAAGTCAACCATGATAGAGAAGTTTCCCTAAGTGTCCATTGCCTAAATTTTTTATCCCATTTTAGTGGAGAGTGAGGCAACTTAAATAATTGGAGGATGAAGTTGACTTCTTGATTAAAATTCACCCTTATGTTTTGATATGTATCAGATTGATTGTCTTTGGGATTATTCCAATGGAAGTGACAGCTACATAAATGCATGAACTGTGTTCAGTCTATTACCAGTGGTTAACAACTTTGTAAGCTTTATGTTCTAATCGTTGTATGTGCGTGCTCAGTCTCTCCTTTATTGAAGTGGCTGTCTCAGATTAAAAAAGTCATGACTGTCAAAGTGCTGATAGGACACCAACATTTTCAGTAGTCTTATTATGATGAATGTTAAAACTGATAGTCTCATTTGGTAATCTGGTAATATGTTTCAAGAATAGTAGAATTTTCATCTGTCAATCAGGTCAATATCAGATTCTTTATTCATATGTCAATATACAATGAAAGAACTATATCATGACCTTGCATTATGGAGAATGTGAAAAAACATGTTATAGTTTCAGCAGGATTTTATGGATTGTCTTGAGATCTAATCTCCATTCCCTTCTATCAATGTAAGTAGGACCCTGTTTATAAAAATCTTGATGCCATGTGTTTAGTTTAATTAATTAAGGATACTACTGCACCAATTTGCAGCGATAACATGAGATAGTTGACATATTTAGTATCTCCTTTGAAGAAAGCAACACTGCATTTCCCAAGCTCTAGCTTCCTTATACATATCCATGTATCTTATGTGGAAAGGATTTTTATAGAGCAAAGCCTTCAATGAACATACTACTGTCTTTGCATGTGTGTCATCCCGAAGCACAACAATTCAAGGATAATGTACCTCAACAATGAGTAAAAGTAACTGTTTGGGCTGTCGTGCTCCATTAGCCCAAGTGGAATTCCTATATTTAACCAAGCTAGCATTGTCATCCCATATAACTTTGGCTCCTGCTGATGATGTGGGAGATTGGGTGTATTTTGTTAGCAACGGCAAGAAGAGGTCAAATCTGTAATATTCAAAAGGAAGGGATACAATATATACACAACAAGTCAGTTTTTAGCACTTCACAATATGCACAGCAAGTGCTAACGTTGTAGGTATGTTACTTCAATGGAAAAGATAAAAAATTGTGCCTCATAGGATTGGTTGTGATTACAAGTTCCTGCAGAAATTACCCAAAACTTCTGTCTACAAGTAGTTCTCTAAACGCTTGTTTGTCATTGGTATTACAATAAAGATAAAAAATCTCTTTCCTGTCGGTCTATTGTTTTGATTAAAATGTAGTGAGTTCAGAATTCTAAACCTGATTCACTCAGAAGCCTGATTTGCATATTCTGAGTCTGAGATGCCTATTCCCTTATGAACAATGTTTTTTCTCTCATATTGCATTTTTTAATTTATGTCAGGTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCGGTATGTCATAGTTTCCTGTTCTTTGGCAGGAATACTAGTCCAAATATGAATGCTGCTTTCTATTTTAGTGGGCGTGTTCCTCCTAAAGCAAATGTTGCTACTTTATAAAATGGTGGAGGGGAAAGGAGTTAAAATATTTACTGTGTAGAGCTAGAAGTTGGAGGTTTGGCTGGAGGTTGTTCGTGTCCTCTGTTTCTATTGTTCTGCATTCTTAAGCTTTTGAGGTTGTTTGGGTAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTAGAGCTAATGAAGGCAAATGCAATATCTGGATGTTATTATGTGTTAGTGGAAAATGTGTTGTTCACTTCCTTTTGTCTATTATACTCTGTTTGGAAATTATGATACTTTTTCCGTTCTTTCATGTGGTATTTTGGGGCTATGTGAAATGCATTTCAGTTGTATTACAGCAAAAGGAACTGTTCTGATTTGATTATCATATTGAATACCCAGTTGAAGAGGAGAACTATATGAGGTTTGATATGTGTGGACTATCAATTCTGCAGATCAAGAGTTCTAGATTAAGTACACGATTAGTTTTGTTCATCAATTTGCTTTATAGGTCCAATTATGACGCACGAATCACTGATTAAAAAATACCTGCAGTGCTGTAGCCACTTTATACTACCAAAAAGAAAAAGAAGCTGTAGCTTCATGATTTTTCATTTAAGGATGTAACTGGATGATGCAATTGCCCTTTCATGTACTTCTGCTACCTGTAAATGTTATGCCAAAACCAAACATCCTGTTGTATTGGCCTCAATAGTAGACTCTTAATTGTGTTTCATGTGTTTGCCTAAGGTAGGTGCTGCTATCTTGAAATTTTTTGGATTCATAGTAATCAAGGATTGCAAGAGTTTAATCGACATGCTGATATTGTTGATCTGCAAGCACTGTTTTCCCTTTGGATGTTCATGCAGATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAGGTACTGAATGTTGGTTTCTTCAATGATAAATCATCTTGTCTTCTTCGTTTTCTCTTGGATTATCCGTTGATCAGCCATTGGTTGATAAAATCTGTAGCATTATAGGAGAATTATTGTAGCATAGTTGTTACTACGAATAATTTATCATTTGGAAGTACATTTTCCTCATGATAGTCCATATTGCTTTTAGCCCATTCCATTTCCAAGCTCTATAAGCGTATAATCATCTTCCTTCAGCTCCAGTTATTACAACATTCTAAGGAAATTTTTGCAGACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTGGTAAGAACTAAGAACTGATTTGATTTGTAAAATTTTTGCATTTTACTGTCTTTATTATGAATAATTTTGCACGTTTTTCAGTCCTTTCGCCTGACGATGTTAAGCCCCCTCTAAGTTTAAGTACGCTTGCTTCAAAATGATTGCTCATCTCAAAGCTTCATCTGCTGTTTCATTGTTAGGTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACGGTATAGGACAGATTAATTATCTTTCTTAACCAATTGTTTTGCTTCTCCCTTTGTAAAGCTAACATAAATACATTTTACAGTTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAAATAATTTAACTTTGTACACCACAATAGTCATAGAACTAATCTACCTTCATGCAAATGTAGAATGATTTATGGTCTGTTTAGTTGGA</genome_strand>
        <mrna_strand>TATACTTCCACTTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG..................................................................................................................................................................................................................................................................................ACCTAACACAATTTTGGCGAAGGGTCTCCTTGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTG...................................................................................................................................................................................GTTGTGGACATGCTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACG................................................................................TTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTGAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTTTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAAATAATTTAACTTTGTACACCACAATAGTCATAGAACTAATCTACCTTCATGCAAATGTAGAATGATTTATGATCTGTTTAGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342109" ref_strand="+" ref_description="SGN-U342109        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>taaatctaaatttagggtttaattgtcaaatttttaaaataaaaatgagggctcttggagacttgagcgatatctttttattaagggcccgtaaattgatgccattgactatttctagtaagtttatgtagtcactactttatgatttagattaaactgctttgtagattaatgaattttatccatatcatagttctttttccttttttgttgtttgttaattaccctttgcctttcaataaccagcatgcttgatagtcaaatactttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="40557" stop="39685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40257" g_stop="39985" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U342109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40257" e_stop="39985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTA</genome_strand>
        <mrna_strand>TAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326913" ref_strand="+" ref_description="SGN-U326913        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G64970.1 | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr5:25975251-25977870 REVERSE | Aliases: MXK3.20, MXK3_20 (evalue: 1e-105, score=379) genbank/nr: gi|53749186|gb|AAU90078.1| At5g64970 [Arabidopsis thaliana] >gi|30793972|gb|AAP40437.1| putative mitochondrial carrier protein [Arabidopsis thaliana] >gi|8843761|dbj|BAA97309.1| mitochondrial carrier protein-like [Arabidopsis thaliana] >gi|15238315|ref|NP_201302.1| mitochondrial substrate carrier family protein [Arabidopsis thaliana] (evalue: 1e-103, score=379)">
      <seq>acaagcaaagctgactttgacattttcccttccattatcccattgaatgccatcaaaattctcctcagcttcactatactgtagaatttagaatgactggagttcatactatttggtttaaacacttagaaagtctcacacttgtagaaaatccagatacaattttgttttctggtggattatttattgaaccgttgattccttcttcaattacatctagttttctaaaaatatcatcaattgatgattccagtgagttacattctcccatttctcgtcgtagtggaccaattttccggcgagaaaaaaagagtgttcgtgccggtattgggggtaatttcttgtgtttgagtttgtcacttaagaagaatactgatgttgttgggaattccagtgaatgtttgttgagtaatggagacgagagtccaaaggtggaagagtctagtgtcggcgatggggttgtgaagaagcgaaatattgggttacggggacgtggtgcaatgaacaccagcaaacatttgtgggctggagcagttgctgcaatggtatcaagaactgttgttgctccacttgaaagactaaagctggaatatatagttcgtggtgaacagaagcacctcttggagctcatcaaaacaattgcagttactcaaggcttgagaggcttttggaaagggaacttggttaatatacttcgtactgctccttttaaggcagttaatttttgtgcttttgacacatacagaaagcaactcctaagattatcaggaaatgaagaaactactaacatcgagcggtttgttgctggtgctgcagctggtgtgactgctactgttatgtgcttaccactggacactatccggaccaagttagtggcacggggtggagaagccttgggtggtgtggttggagcttttcaacatgtgatcagaactgaaggattcttctctctttataagggactagtaccctccattttgagtatggccccagcagcggctgttttctatggtgtatatgacatattaaaatcagcttatttgcattcacctgaaggcagaaaaagaatagagtatatgaagaatcagggagcagagctcaatgcttttgaccagcttgagttgggacctatgaggaccttacttcatggtgctattgctggtgcttgtgctgaagccgcaacttatccatttgaggtcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="52741" stop="45175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52441" g_stop="51889" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47980" g_stop="47677" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="857" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47676" i_stop="45821" i_length="1856">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45820" g_stop="45475" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="1203" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U326913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52441" e_stop="51889"/>
          <exon e_start="47980" e_stop="47677"/>
          <exon e_start="45820" e_stop="45475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAGGTTAGTGCTTTTCTGCCGTATCTGCGTTATTGATTTCTTTACTTGTCGTTTATCCTTTTGGTATATACTAACAAGGTTAGTGCTTTTTGTCCAGTATCTATGTTGTTGATTTCTTTTCTTGTTTATCCTTTTAGTAAATACTTCCATTTGCTGCACTTAAGTAGCAGTAAGGACCGCGGACTCTCTATATTCCCAGACCGCACTCGTGGGATTACACCGAGCTGTTGTTGTCGTACACTGACAGTAGTTTGAACTTACTCGGAATATCAAATTAGTTATTGGGGATCTGTTGTTGATATCCTAGTATCACTTTGTTTTTTAGTTGCACGGACTCTTCACTTTTGATGCCGCACCCGTCTTGGATTCTTCAAAAATACACTACTTTTGGCGAATCCGACCGCACTCGTTGGGATTTTTGAAGAGTCCGAGCAACACAGCTTTGTTTTATTAGTGCCATTTGGCAAGTTGTGATTGAATTTCGAGATGTAATATATAGGAGGTATAAGGGAAATAACGAGCTACTTCATGTAGAGGAGAGAGTTTTCAATATATCATTATCTTCTTTGTGACGCAGAATAATGACTCTGCCAAATTTTGGATTGAAGAAAAATAATTACTGCAGCTTATGATTTTTGCTTATTGATGTTATTATTATCTTTGGGTCATCATAATTTTCTTAGTCTTAAGAGGGGAATTTTTCCAAATTTGAGTGGAGTGACATGATACAAGGAAATCCATGTTAGGGAGATTAAAGATTGAAAAGATCGAATGTAACAGTTACAACTCACACCTAGTCAAGTACACCCATATAAGGGAGAAGTAGTTAATTTTGTTGACAATGAAGGGGCGAATAACTATATATAGAGTTATCCTGCTTTGGGGAAAATTAGATCTCGAAACCCAAGTTTTTTAACACCCCCTACCTTGCCACTTTGACCTCATTACTAATCTGGTAGGAGTCTTGATAGTTTGAACAGTGGATATGGAATTCATTCATAATCTAGCTCATGGTTTAGGCATTCAAACAAATTGAAAGACTAAGCTGAGTTGTCATTTTACTGAAATTAGATCTAGTGTTTGCTAGGAGCCTTTTGGTTAGACACTTAATTGTGAAGGAAATTAATGTGAGGTTTCAAGTTGTTTTATAGAATTCCAAAGTAACCTAAAAAGACAAATTAATTACATGGTTTTGTTGGAAGAAAATGAATCTGAACATAATGGAATGGGTGTAGAGGATATATATATAGCCAACACAACTGGTTTGGTCAATGCATAGTTGATTGATGATTGATTACTTTTGGTGTTCGCTGTGTAGAGTTGTTGCATTATGCATAACTTCATATCTCTCTATATATATATATTGAGTAACTCCATAATTGTTTGGGGTCTAGTTGGCAGAACAATGACAAATGCTTTGTAGGAGGTGGAGATAAGAAACAAGATACGCTGCAAACATAGTATTACTTGTCAGTCTCCTATTTAACAGAGTGGATTTTCATCATAGCCTGGAGGAATTATTACATAGATGACTTTTTTTATTGCTTCCTTGCACTTGATCTCCTATGTAAATACTTAAACTGTGGGGGAATTTCCCATACTGCCTTTGAGGCAAAACTGCTTGCCGTGGAAGTTTACCTTCTTTCTTCCTTGTGCACATTTCAAAAGCAAGTACAATAATCAGGGAGCTAGATGGTGTGTTCTCTTAACAAAATATAAGGAAAAAGTTTAAAATGCACGAGGGCATTATTTGATCCACTTAGGATTCCGTTTTCTAGTCTATTCTTGCTGGTAACTCTTAAGTGGCACCTTCGGAGGTTTTCCCCATGGCGCAATGGGGTTGCTGTGCATTCATATCTTCTGGCCTCATAAATAACTACAGAAAAACCATGCGTGAACAGAAAAAGCAACTTAAAATTTTCATAACTATAATGCTATAAAAGAATGTATAAACTGGCTTATTTGTATTGATGGCAGTTGTCTGTCTCTCTTGGTCTTGGTTGTCTGTGAAAGCTTCCAGACCTTCTCAGTTGACCCTATCTACAACACCGCCATATCTTTAGTTGCATCTGAAAGATGGAATTCTAAGAAACAAGGAATGGACAATGAAGTTTCAAATATATGATAGCAAAAAAGCTGTAAATATGGATGGATATGAGGGAGAAAGGGTTTGATTTTCATAACAGAAAAACAATAATGCAGAGAAGACTGAATTTTCAATATAGGATATGAATAAAATATGGAGGAAATGCCATGAAAGGTGATGGTTTCCGTTAATTGTTTTCCAAATGTATAAGTGCTGGGAAATGGATGAGTCTTTGTTGGAGATTTATCCTGGTATTCTTCTACCTTGGGGTAAGAAGCTGTAATGGTTAATCAAGAGAGATTAATAACAGTAAAAAGAATCTGAGGCTCTGTCAAACAAGTCACACTGTGGACATAGTTACTTTAGATAATCCCATATCACTATGCTGCTGTCACGAATGAAAGTGTCATGGGTCTAGTTATCCTTCTCTTGTTGTTTTGAGGTAAAAGAATGTCCAATGTAACATTAGGATATGGTGTGGTGTCTGGTCTTACATTCCTTATTAGATATGGTAAACCCCACCACTTAAGCACCACAATTCAGGAGCAAACTGTGGCCCTTCCCCTATTTTGTTCCCTTGGTGACTCGCAACCCCAACCTCATTGAGTTAGTGGGCCTCTTTCACTAGGATATCCCTCCTTTGTCTTGGCCTTCTTTTCAGAATCAAAGGCCTATTTTCTGTTAAGTCATAAATCAATGTTTTTAAGGCATGCACGGTCATCCATTTTGCTCAAGCTTTGAACCTTTGTCTCACTTTTCAGTTACTCTACATTAGATGAATATTGTGTTTTTTCCAGATCTCCATCAAATCAACGTCCATCTTCTTAAGCCAAAAGCATCATGTTTTTCTTTGATACACTTTCTATACTCCATTCCAACATAGAGATGAATCTGAAGTAAGCTTTTACCCAAAAAGTTCGACCTGTTACTCATCAAGTCATCCATATTTCTACAATGCTATGACCTTTTAAAATCATTGTTGTTTAGTGTTATTTCCTTTTTTTTTGTTTTTGCCGGAGGGCAGGAGAGAGGTTCTTAAATCTTTTTAAAAAGTCAAACAAGACATTCATATTGAAAAGAGGAAGATTACGTTTTGACCTAATACAATTTTTAATCTGAATACTTCCAATAAAATCCTTTAATTTGGATTAAGCCTCTAGATATTCCTTATGCTCAAGTTTTTAACTTATTCTTAATCATACTGTTTCTGAATAGAAAGAAGTTAAATTTTGTATTCCCCTTGTCCCCCTCCTTTTGGTAAGTAAATATATGAAGCTTACAAATTGCCTTAATCATCTTTAGGAGTTCTCTGCAGTTTGCACCTAGATGAAATTTTGGAATGGTTTTTATTCTGAAACCATCGTGGGAGCTTCATATTGAGGAGAGAGAGGGTTGGTCCATCATTTTTATTTGGAATACGAGCTTGTCCATCCATTCCTGGTTAATTTACTTCTTCATTCTTTCTGAGCCTCTGGACACTTTTTTCAAGTCTCCATATGGTTCTGATTCCCTGTTCTTGTTCTTTGTTTCTTGTCCTCTCTGATATTGTGATGGCCAGAGTCGACAAGTAATTGTATAAACTAACACAATAGACATGTTTACTTCTTTTTGATTATTTGACGTTTGTTAGTAGTTAAAATAGTAAAATTGGTAAAAGATACAATGTACCAATTTCCAAAAAAAAAAAAAAAAAGGGTAAAAGATAGTTTAGTTTATCCTTCTATATACCTTCTAAAGTAGTTAACTTCACATTGATCTTGAACTCAAGTTCTGCTTACAATTACCTTTTGCTTCAACTCTGTTTGAATAAATCTTGTTTTTGCAGAACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACTGTAAGTCATGAGATGGAAATTTGCATTTTTTTAAGCCTTTTGATATTTCTAATTTTCACTAAGCCCATCTAAGATCGTGTATAAACACATAAAACTGTCAGTGCATTAATTTTACATTTTGATCTAGCTGTTGACAGAACTGTCAAAAGAACTTCTTTTCTATGTAATTGTTTTCTTTACTAGTACATTTCTAATCCACAAATAGCTAGAGAAAGGAAAATAAGAGAGCTCTTTTCTCTTCTTTAGAAAACATCCTTTATGTTGCTCATGGTTCTTCCCTTCCTTCAGTACAATTTCTCACCTTCTAGCTGAATCCAATAAGGAAGGCTGCAAGTACAAGTGAAATCCGAAAATAGGACTAAAATTATAAAATTAACATATGGAGTAAAAACAGAGGTATTATGTCACATAATCTTATGGTTTAAGTTCTGCAAAATACTAGCTGCTTGTCAGTTTGACTTGTGTCATTCATTGATTATAGGTTTTTCTGGTAGAAAGGAGATATCTTTTTGTTAGACTTTGATTTGCATCGGAAATTGCACAATCAAAAAACAAGAGATTCTTTATATGAAAAAGTTATGATTTGAAGGAAAGAAGGTTGATGTTTTGGATCCCTTATCTTCAAGTGTCAATAATCATCTACCCATCCCATTTTGATCCATAACTGTCCTATTTCTCGTATATTTTACAGTTGCTGATTGAAAACATGATCCATTTGGTGGTTACGCTGTTTCTAATTCATCTGTTGATGAGTTCTAACATTTCAAGCAGGTTTTGCCTCTAAACCTTTTTTGTTTTTCTAGTATTTCTTGGTGAGTTGTGGAAGGAGATAGTGGTGTAACAAGGGGAAAGGAAAGCCAGCTAGTGGCAGAAAGGACCAGGGAGGTTGGTCCTTATTGAAAAAAAAAGGAATGGGGAGGTGGGACAGTGCTTGAGTGAAAGCCTTGGGCTGTCGACAAAGAGGTTGATGATTAATAAACTCTTATCAACTTCCTCTGGCTTTTAAGCTTCTCGTCCTCAAGCAAGAACACATCATTGTGAATCCTGACTAGAAGATCCTTAAGCACATCCTTTTTTGTTTTTGCTATTTATTAATATGTATAAGGTACCAAAAGATGGGAAAACTTTTGGAATACTGAATAAAATAAAACTAAGAATCTTAATGTGTCATTTTGGATTAGAATTAAACTGACTTAGTCGAGAGAAGTTTAGGATTTAGATTTTTTTTTTCTAAAACAGATAATAGAAGGGTCCCAACTGAAGATGACATACATGGCAGGGTGAAGGAGCGAAATGCCCTGTATAAAATTTAGTACAGCAGCTACTGATAAAGAAGAAAGAAGAAAGGATTAGTACAACAGCTTTGTCCAAGAGAAAAACAAGGAATGAGATGGAAGAATAGAGCAATTTTAGCTTCATCAGGGAACTAGCAGCAAAATGGGTACTGGACAATGTCTGTTATTTTTAATATGGACCAAACTAGTTTTTCCCTCATCATTCAGGTTTGATACATGCTCCTAATATAACATAGTGCATGGAATGATATTCTGTCAACCATTAGCATCAAAGCCCTGGTTTTAGTACATAGTTTTTAGGTCTCTGATTTGAATATGTAAGAAGTTGTGTTGAAGTAGTTTGCATTTCCTCTTCTGTAAGAATGTGTAACAATCTTTTGTTTTTAATAAGTATGTATTTATAACGTGTTCACATCAGCTGATGTCCTTATTATTGATTTTTCCTTTTTTTCAGAAATGTCCATATTAGATTTGATTATCCTCCTTATGATTGGGGAAGTTGATTTTCTCTGGCTTCTGCTTTGTTATTTCCTGTGTTGCTGATAATTTAAAACCTTTCAGATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</genome_strand>
        <mrna_strand>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323845" ref_strand="+" ref_description="SGN-U323845        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:16379607-16381230 REVERSE | Aliases: None(evalue: 1e-60, score=229) genbank/nr: gi|21594009|gb|AAM65927.1| unknown [Arabidopsis thaliana](evalue: 9e-59, score=229)">
      <seq>cacagttttgcctcaatttcaagaaaacaatgatttcctttctttggttaatacttctaacacacatcaggtgggtaaatacagcagatctagcagatgtttcaacttcaaaggtcctaaacatattcatattagccggacaaagcaacatttccggccgaggtggtgtcattaaccatggccaaaatggcctggctaatgagacatgggatggtgtgattccaccagaatgtcaatccaactcaaacatcctcagactcaatgcaggacttacatgggttgaagctcaggaaccacttcaccaagacatagatttgggtaaagtttgtggagttgggccaggtatgtcatttgccaattcagttctgaagagagatccaagtattggagtgattggtttggtgccttgtgctattggaggaacaaatataagcgaatgggctcgtggcagtgttctgtataatcatatgataaggagaacagaagctgctttgcaaggaggtggaaaacttcaagctttgttgtggtaccaaggtgagagtgatacagagactcttgaagatgccaaattgtacagatttagactgaagagattattcaagaatgtgctccgtgatctacagtcacctacattgcctgtcattcaagtggcattggcatcatctattggatcttatatggagcaggttagaaaagctcaactgagtattaatcttccaaatgtgagaactgttgatgccaaagggctacctttagggatggattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65680" stop="63731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65380" g_stop="64734" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64733" i_stop="64152" i_length="582">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64151" g_stop="64031" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="768" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U323845" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65380" e_stop="64734"/>
          <exon e_start="64151" e_stop="64031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTTTGCCTCAATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCTACAGTCACCTACATTGCCTGTCATTCAGGTAAAAAAATATCTTTACTCATTCAAATTATATTACTCTAGTCGGCAAAAATATATTACTGTGTATTAGTTTTTAATATATAATTCTTCATATTAATTATTAATTGTTGAATTGACACGGAAAATCAATGATTTGACTCTTGTACTTCCATATATTACTTTTGTTTTTCCAATTTCCGAATGGAGCTGGTCAGTCTCTATTTATGTACCACATGAAAATTTAAGGTATCGTATAATGGTTGCTCTCTTTCCTTATCAGCAAGTCACATACTCGTGACATTCACTTTTACTTGTCTACTATATTAAAAATAATTTTTTTTTTTATTTGTTCATTTTAGCATATTAAAGGGGGGAAGACATGGTAAAATATGCATTATTCCTTATGAGGTGTATGAAGTCTATTGTGTATAGGTAAAGGTGAAGGAAGGGGGGGGGGGGTAGGTTTTAGGAATTCAAATTCAATTATGTACAACTCTTTTTGATGTCATTATTGGTGTTAGTTAAGACTTAAGAGTGGTCCACACATTTATTGAGGCAAATTTGAATACATATGGCTAATTTTATTTGGTTGGTGTGTGTTTAGGTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGTTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGAGAACTGTTGATGCCAAAGGGCTACCTTTAGGGATGGATTATG</genome_strand>
        <mrna_strand>CACAGTTTTGCCTCAATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATTTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATTGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCTACAGTCACCTACATTGCCTGTCATTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGTTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGAGAACTGTTGATGCCAAAGGGCTACCTTTAGGGATGGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316128" ref_strand="+" ref_description="SGN-U316128        Tomato 200607 #1 [31 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:8206538-8207603 FORWARD | Aliases: T26J12.8, T26J12_8(evalue: 1e-39, score=160) genbank/nr: gi|15220659|ref|NP_173728.1| expressed protein [Arabidopsis thaliana] gi|27754627|gb|AAO22759.1| unknown protein [Arabidopsis thaliana] gi|28394037|gb|AAO42426.1| unknown protein [Arabidopsis thaliana](evalue: 1e-37, score=160)">
      <seq>gaaacatctatatatacaggaaaacaaaaaccctaaccctaattctatataaaccactattattcttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaaaaaaaaaaagtaaaaccctttgtcagcttttgagtttttgaagtgtgttcgatgtgtgttagttctttgaactgggtaaacagtcttgtttgtgtttcagtagtcaaattacgagcagatatgttctatgaaaggaatcctgttctctttgcatttatatttatgttttaagcatgcttgttaagggtaaaacgagtaagtctaaaaaacccaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2iZkN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70481" stop="67903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70181" g_stop="69517" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68193" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="1149" r_length="484" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1163" polyA_stop="1177"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-U316128" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1149</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70181" e_stop="69517"/>
          <exon e_start="68676" e_stop="68193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATCTATATATACAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATATTTTAAGCATGCTCGTTACGGGT-AAATGAGTAAGTC</genome_strand>
        <mrna_strand>GAAACATCTATATATACAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAA-AAAAAAAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCGATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTTGTTTGTGTTTCAGTAGTCAAATTACGAGCAGATATGTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATGTTTTAAGCATGCTTGTTAAGGGTAAAACGAGTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6020" PGL_stop="942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6020" e_stop="5362"/>
            <exon e_start="4747" e_stop="4529"/>
            <exon e_start="3967" e_stop="3261"/>
            <exon e_start="2662" e_stop="1866"/>
            <exon e_start="1411" e_stop="942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6020" e_stop="5362" e_length="659"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.820">
            <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4747" e_stop="4529" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4528" i_stop="3968" i_length="561"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3967" e_stop="3261" e_length="707"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2662" e_stop="1866" e_length="797"/>
          </exon>
          <intron i_serial="4" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1411" e_stop="942" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6020" stop="5362"/>
              <exon start="4747" stop="4529"/>
              <exon start="3967" stop="3261"/>
              <exon start="2662" stop="1866"/>
              <exon start="1411" stop="942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3629" stop="3261"/>
              <exon start="2662" stop="1866"/>
              <exon start="1411" stop="1040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATG : ATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCCAAAAGGATTATATCTG : GTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGCTGGAGTAATGCTGATAAAGCACTAACTACTTTCGTTAATGGACCATTACTTGAGTACTCGCAGAACCGTCGGAAAGCTGATAGTGCAACAACATCCTTTCTATCTCCACATTTACATTTTGGGGAAGTCAGTGTTCGTAAGGTATTCCATTTTGTTCGCATCAAGCAAGTTCTCTGGGCCAATGAAGGAAATAAAGCTGGTGAAGAGAGTGTTAATTTGTTCCTTAAGTCCATTGGGCTGAGGGAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG : TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG : GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTT</gDNA_template>
            <first_frame> I  T  N  H  P  Q  S  H  F  L  L  P  L  S  L  E  R  F  V  F  L  G  G  Q  C  L  *  *  L  H  K  N  S  I  S  S  F  I  K  E  *  H  L  G  F  V  K  V  R  F  F  T  R  I  C  L  K  K  I  I  F  V  I  F  I  S  S  V  K  A  T  G  N  S  Q  S  I  D  K  I  N  P  N  I  L  L  S  K  K  D  S  I  T  W  C  L  H  S  K  R  E  K  *  R  E  K  D  *  S  L  V  L  L  K  E  D  V  R  W  W  L  *  H  S  M  V  *  K  G  S  E  S  G  R  *  P  C  F  G  C  W  S  *  S  R  G  S  Y  C  C  V  Y  L  C  S  *  R  R  R  A  L  L  S  W  *  S  F  K  M  V  A  *  A  E  F  G  S  S  *  F  I  F  E  E  S  W  N  L  P  Y  Y  K  E  I  Y  *  *  Y  F  F  S  S  *  S  C  *  I  Y  W  C  Y  S  A  L  L  Q  S  F  V  * :   S  Y  F  T  C  E  R  S  S  H  K  R  N  L  N  S  S  R  Y  I  S  A  F  L  *  C  *  F  A  L  *  T  M  G  S  *  *  R  *  R  S  P  V  H  N  I  F  C  F  L  G  E  M  P  *  H  A  L  *  S  R  S  S  T  S  S  S  Q  K  D  Y  I  W :   *  C  I  K  M  P  F  R  Q  L  G  I  *  R  *  I  R  E  R  K  Q  C  T  S  C  S  G  M  V  T  W  L  E  *  C  *  *  S  T  N  Y  F  R  *  W  T  I  T  *  V  L  A  E  P  S  E  S  *  *  C  N  N  I  L  S  I  S  T  F  T  F  W  G  S  Q  C  S  *  G  I  P  F  C  S  H  Q  A  S  S  L  G  Q  *  R  K  *  S  W  *  R  E  C  *  F  V  P  *  V  H  W  A  E  G  V  L  K  I  H  E  F  *  S  S  L  *  P  *  K  A  P  S  W  S  P  K  V  L  P  M  G  S  G  *  R  L  L  *  G  M  E  T  R  *  N  R  L  S  F  G  *  C  W  Y  E  R  V  M  G  N  W  L  A  S  *  S  Y  P  S  R  G  I  *  F  L  C  E  G  S  A  A  S  M  E  V  G  D  E  V  F  L  G  H  I  V  R  C  R  S  *  E  *  C  S  W  L  A  I  Y  L  W  Y  P  T  *  W  S  *  A  *  S  D  *  *  S  T   : V  C  G  I  Q  V  *  P  S  W  G  I  C  P  A  V  A  S  *  T  C  *  A  A  H  R  M  D  T  P  S  M  E  C  T  R  I  C  A  *  S  C  W  H  *  A  G  F  Q  L  S  S  S  Y  S  *  N  *  F  S  K  S  *  T  R  T  S  P  I  T  N  V  A  E  *  C  S  C  K  S  C  D  *  E  W  Y  G  R  R  T  W  *  L  C  *  L  P  N  S  I  S  S  G  H  A  Y  G  N  G  P  *  T  S  Q  E  Q  P  C  N  S  Y  C  S  T  L  *  R  S  N  G  A  K  H  D  V  I  F  V  Q  S  *  R  *  R  E  L  R  G  H  *  E  F  S  C  G  K  *  G  R  S  S  N  R  H  Q  C  S  *  S  S  *  E  R  H  A  *  P  S  R  H  A  N  C  S  N  Q  C  Y  P  T  F  *  F  C  G  R  *  E  E  F  *  R  F  N  S  R  I  F  Q  *  Y  *  R  K  G  W  G  C  S  A  Y  M  V  S  L  K  *  *  L  F  G  P  I  C  W  *  *  *  W  Y  W  D  Q  F  I  L  L  A  K  A  S  T  I  S  P  A  N  E  L  A  A  A  F  S  N  R  :  V  I  I  Y  V  E  L  R  *  Q  Q  G  G  E  A  S  G  *  Y  R  H  L  A  Q  H  I  *  Y  S  I  H  L  L  F  L  S  *  S  *  P  D  Q  P  S  L  C  L  Y  L  *  L  I  R  W  F  V  W  I  F  I  L  I  C  R  A  S  P  F  T  Y  Y  T  I  Y  V  S  L  L  Y  S  I  E  V  F  H  K  A  K  *  V  L  E  R  G  C  S  P  L  S  S  S  H  L  C  L  L  F  F  L  L  F  S  A  T  Y  I  L  M  A  I  T  I  I  *  S  P  G  T  N  *  I  F  V  D  I  I  V  S  N  S  V  *  R  M  Y  M  W  F  K  Q  L  H  L  I  F  L   </first_frame>
            <second_frame>  *  P  I  T  L  N  L  T  F  S  S  L  F  L  W  R  G  L  F  F  W  V  D  N  A  Y  S  N  F  T  R  I  A  S  H  H  S  S  K  N  N  I  W  G  L  L  K  L  G  S  L  L  E  F  A  *  K  K  S  S  L  *  S  L  S  P  Q  *  K  L  Q  G  T  V  K  V  *  I  R  L  T  P  I  Y  F  C  L  R  K  T  Q  *  H  G  V  Y  I  V  R  E  K  N  R  E  K  K  T  S  L  W  C  C  *  R  K  M  S  G  G  G  C  S  I  V  W  F  R  R  D  L  R  V  E  D  N  P  A  L  A  A  G  V  R  A  G  A  V  I  A  V  F  I  Y  A  P  E  E  E  G  H  Y  Y  P  G  R  V  S  R  W  W  L  K  Q  S  L  A  H  L  D  S  S  L  K  S  L  G  T  S  L  I  T  K  R  S  T  D  S  I  S  S  L  L  E  V  V  K  S  T  G  A  T  Q  L  F  F  N  H  L  Y   : D  P  I  S  L  V  R  D  H  R  T  K  E  I  L  T  A  Q  G  I  S  V  R  S  F  N  A  D  L  L  Y  E  P  W  E  V  N  D  D  E  G  R  P  F  T  T  F  S  A  F  W  E  K  C  L  S  M  P  Y  D  P  E  A  P  L  L  P  P  K  R  I  I  S   : G  D  A  S  R  C  P  S  D  N  L  V  F  E  D  E  S  E  K  G  S  N  A  L  L  A  R  A  W  S  P  G  W  S  N  A  D  K  A  L  T  T  F  V  N  G  P  L  L  E  Y  S  Q  N  R  R  K  A  D  S  A  T  T  S  F  L  S  P  H  L  H  F  G  E  V  S  V  R  K  V  F  H  F  V  R  I  K  Q  V  L  W  A  N  E  G  N  K  A  G  E  E  S  V  N  L  F  L  K  S  I  G  L  R  E  Y  S  R  Y  M  S  F  N  H  P  Y  S  H  E  R  P  L  L  G  H  L  R  Y  F  P  W  V  V  D  E  G  Y  F  K  A  W  R  Q  G  R  T  G  Y  P  L  V  D  A  G  M  R  E  L  W  A  T  G  W  L  H  D  R  I  R  V  V  V  S  S  F  F  V  K  V  L  Q  L  P  W  R  W  G  M  K  Y  F  W  D  T  L  L  D  A  D  L  E  S  D  A  L  G  W  Q  Y  I  S  G  T  L  P  D  G  R  E  L  D  R  I  D  N  P  Q  :  F  V  G  Y  K  C  D  P  H  G  E  Y  V  R  R  W  L  P  E  L  A  R  L  P  T  E  W  I  H  H  P  W  N  A  P  E  S  V  L  E  A  A  G  I  E  L  G  S  N  Y  P  L  P  I  V  E  I  D  S  A  K  V  R  L  E  Q  A  L  S  Q  M  W  Q  N  D  A  A  A  R  A  A  I  E  N  G  M  E  E  G  H  G  D  S  A  D  S  P  I  A  F  P  Q  A  M  H  M  E  M  D  H  E  P  V  R  N  N  P  V  I  V  T  V  R  R  Y  E  D  Q  M  V  P  S  M  T  S  S  L  F  R  A  E  D  E  E  N  S  V  D  I  R  N  S  V  V  E  S  R  A  E  V  P  T  D  I  N  V  A  E  V  H  R  R  D  T  R  D  Q  A  V  M  Q  T  A  R  T  N  A  T  P  H  F  N  F  A  V  G  R  R  N  S  E  D  S  T  A  E  S  S  S  S  T  R  E  R  D  G  G  V  V  P  T  W  S  P  S  S  S  N  Y  S  D  Q  Y  V  G  D  D  N  G  I  G  T  S  S  S  Y  L  Q  R  H  P  Q  S  H  Q  L  M  N  W  Q  R  L  S  Q  T  G :   *  S  F  M  W  S  Y  D  S  N  K  A  E  K  Q  V  A  N  T  D  I  W  L  S  T  F  S  T  A  F  I  Y  S  F  S  H  S  P  D  L  I  S  H  L  C  V  Y  I  S  N  *  S  G  G  S  S  G  F  S  S  S  S  V  G  H  P  H  L  P  I  I  P  Y  M  C  L  C  C  I  V  *  K  F  F  I  R  P  N  K  C  *  K  E  V  A  V  L  C  Q  A  H  T  C  A  F  C  F  S  F  S  F  L  L  L  T  F  *  W  Q  *  R  L  S  E  V  L  E  L  I  R  F  L  W  I  S  *  F  Q  T  L  F  D  G  C  T  C  G  L  S  S  F  I  S  Y  F  C  </second_frame>
            <third_frame>   N  Q  S  P  S  I  S  L  S  P  P  S  F  S  G  E  V  C  F  F  G  W  T  M  P  I  V  T  S  Q  E  *  H  L  I  I  H  Q  R  I  T  F  G  V  C  *  S  *  V  L  Y  *  N  L  P  K  K  N  H  L  C  N  L  Y  L  L  S  E  S  Y  R  E  Q  S  K  Y  R  *  D  *  P  Q  Y  T  S  V  *  E  R  L  N  N  M  V  F  T  *  *  E  R  K  I  E  R  K  R  L  V  F  G  V  V  E  G  R  C  Q  V  V  V  V  A  *  Y  G  L  E  G  I  *  E  W  K  I  T  L  L  W  L  L  E  L  E  Q  G  Q  L  L  L  C  L  F  M  L  L  K  K  K  G  I  I  I  L  V  E  F  Q  D  G  G  L  S  R  V  W  L  I  L  I  H  L  *  R  V  L  E  P  P  L  L  Q  R  D  L  L  I  V  F  L  L  F  L  K  L  L  N  L  L  V  L  L  S  S  S  S  I  I  C  M  :  I  L  F  H  L  *  E  I  I  A  Q  K  K  S  *  Q  L  K  V  Y  Q  C  V  P  L  M  L  I  C  S  M  N  H  G  K  L  M  T  M  K  V  A  R  S  Q  H  F  L  L  F  G  R  N  A  L  A  C  L  M  I  Q  K  L  H  F  F  L  P  K  G  L  Y  L  :  V  M  H  Q  D  A  L  Q  T  T  W  Y  L  K  M  N  Q  R  K  E  A  M  H  F  L  L  G  H  G  H  L  A  G  V  M  L  I  K  H  *  L  L  S  L  M  D  H  Y  L  S  T  R  R  T  V  G  K  L  I  V  Q  Q  H  P  F  Y  L  H  I  Y  I  L  G  K  S  V  F  V  R  Y  S  I  L  F  A  S  S  K  F  S  G  P  M  K  E  I  K  L  V  K  R  V  L  I  C  S  L  S  P  L  G  *  G  S  T  Q  D  T  *  V  L  I  I  L  I  A  M  K  G  P  F  L  V  T  *  G  T  S  H  G  *  W  M  K  A  T  L  R  H  G  D  K  V  E  Q  V  I  L  W  L  M  L  V  *  E  S  Y  G  Q  L  V  G  F  M  I  V  S  E  S  W  Y  L  V  S  L  *  R  F  C  S  F  H  G  G  G  G  *  S  I  F  G  T  H  C  *  M  Q  I  L  R  V  M  L  L  V  G  N  I  S  L  V  P  Y  L  M  V  V  S  L  I  G  L  I  I  H  S :   L  W  D  T  S  V  T  L  M  G  N  M  S  G  G  G  F  L  N  L  L  G  C  P  P  N  G  Y  T  I  H  G  M  H  Q  N  L  C  L  K  L  L  A  L  S  W  V  P  I  I  L  F  L  *  L  K  L  I  Q  Q  K  L  D  *  N  K  P  Y  H  K  C  G  R  M  M  Q  L  Q  E  L  R  L  R  M  V  W  K  K  D  M  V  T  L  L  T  P  Q  *  H  F  L  R  P  C  I  W  K  W  T  M  N  Q  S  G  T  T  L  *  *  L  L  F  D  A  M  K  I  K  W  C  Q  A  *  R  H  L  C  S  E  L  K  M  K  R  T  P  W  T  L  G  I  Q  L  W  K  V  G  Q  K  F  Q  Q  T  S  M  *  L  K  F  I  G  E  T  R  V  T  K  P  S  C  K  L  L  E  P  M  L  P  H  I  L  I  L  R  *  V  G  G  I  L  K  I  Q  Q  Q  N  L  P  V  V  L  E  K  G  M  G  V  *  C  L  H  G  L  P  Q  V  V  T  I  R  T  N  M  L  V  M  I  M  V  L  G  P  V  H  L  T  C  K  G  I  H  N  L  T  S  *  *  T  G  S  G  F  L  K  Q   : G  D  H  L  C  G  V  T  I  A  T  R  R  R  S  K  W  L  I  Q  T  F  G  S  A  H  L  V  Q  H  S  S  T  L  S  L  I  V  L  T  *  S  A  I  F  V  S  I  S  L  I  D  Q  V  V  R  L  D  F  H  P  H  L  S  G  I  P  I  Y  L  L  Y  H  I  C  V  S  A  V  *  Y  R  S  F  S  *  G  Q  I  S  V  R  K  R  L  Q  S  S  V  K  L  T  L  V  P  F  V  F  P  S  L  F  C  Y  L  H  F  D  G  N  N  D  Y  L  K  S  W  N  *  L  D  F  C  G  Y  H  S  F  K  L  C  L  T  D  V  H  V  V  *  A  A  S  S  H  I  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5680" stop="5362"/>
                    <exon start="4747" stop="4529"/>
                    <exon start="3967" stop="3261"/>
                    <exon start="2662" stop="1866"/>
                    <exon start="1411" stop="1408"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2043</number_coding_nucleotides>
                  <number_encoded_amino_acids>681</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSLAHLDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTKEILTAQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRIISGDASRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFVGYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVRLEQALSQMWQNDAAARAAIENGMEEGHGDSADSPIAFPQAMHMEMDHEPVRNNPVIVTVRRYEDQMVPSMTSSLFRAEDEENSVDIRNSVVESRAEVPTDINVAEVHRRDTRDQAVMQTARTNATPHFNFAVGRRNSEDSTAESSSSTRERDGGVVPTWSPSSSNYSDQYVGDDNGIGTSSSYLQRHPQSHQLMNWQRLSQTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5982" e_stop="5285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="5982" e_stop="5285" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5982" stop="5285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</gDNA_template>
            <first_frame> F  S  G  E  V  C  F  F  G  W  T  M  P  I  V  T  S  Q  E  *  H  L  I  I  H  Q  R  I  T  F  G  V  C  *  S  *  V  L  Y  *  N  L  P  K  K  N  H  L  C  N  L  Y  L  L  S  E  S  Y  R  E  Q  S  K  Y  R  *  D  *  P  Q  Y  T  S  V  *  E  R  L  N  N  M  V  F  T  *  *  E  R  K  I  E  R  K  R  L  V  F  G  V  V  E  G  R  C  Q  V  V  V  V  A  *  Y  G  L  E  G  I  *  E  W  K  I  T  L  L  W  L  L  E  L  E  Q  G  Q  L  L  L  C  L  F  M  L  L  K  K  K  G  I  I  I  L  V  E  F  Q  D  G  G  L  S  R  V  W  L  I  L  I  H  L  *  R  V  L  E  P  P  L  L  Q  R  D  L  L  I  V  F  L  L  F  L  K  L  L  N  L  L  V  L  L  S  S  S  S  I  I  C  M  V  S  T  C  F  H  F  F  L  W  F  S  C  F  F  K  *  K  I  E  H  H  C  F  T   </first_frame>
            <second_frame>  S  L  E  R  F  V  F  L  G  G  Q  C  L  *  *  L  H  K  N  S  I  S  S  F  I  K  E  *  H  L  G  F  V  K  V  R  F  F  T  R  I  C  L  K  K  I  I  F  V  I  F  I  S  S  V  K  A  T  G  N  S  Q  S  I  D  K  I  N  P  N  I  L  L  S  K  K  D  S  I  T  W  C  L  H  S  K  R  E  K  *  R  E  K  D  *  S  L  V  L  L  K  E  D  V  R  W  W  L  *  H  S  M  V  *  K  G  S  E  S  G  R  *  P  C  F  G  C  W  S  *  S  R  G  S  Y  C  C  V  Y  L  C  S  *  R  R  R  A  L  L  S  W  *  S  F  K  M  V  A  *  A  E  F  G  S  S  *  F  I  F  E  E  S  W  N  L  P  Y  Y  K  E  I  Y  *  *  Y  F  F  S  S  *  S  C  *  I  Y  W  C  Y  S  A  L  L  Q  S  F  V  W  L  V  L  V  S  I  F  F  C  G  F  L  A  S  L  N  K  R  *  S  T  T  V  L  L  </second_frame>
            <third_frame>   L  W  R  G  L  F  F  W  V  D  N  A  Y  S  N  F  T  R  I  A  S  H  H  S  S  K  N  N  I  W  G  L  L  K  L  G  S  L  L  E  F  A  *  K  K  S  S  L  *  S  L  S  P  Q  *  K  L  Q  G  T  V  K  V  *  I  R  L  T  P  I  Y  F  C  L  R  K  T  Q  *  H  G  V  Y  I  V  R  E  K  N  R  E  K  K  T  S  L  W  C  C  *  R  K  M  S  G  G  G  C  S  I  V  W  F  R  R  D  L  R  V  E  D  N  P  A  L  A  A  G  V  R  A  G  A  V  I  A  V  F  I  Y  A  P  E  E  E  G  H  Y  Y  P  G  R  V  S  R  W  W  L  K  Q  S  L  A  H  L  D  S  S  L  K  S  L  G  T  S  L  I  T  K  R  S  T  D  S  I  S  S  L  L  E  V  V  K  S  T  G  A  T  Q  L  F  F  N  H  L  Y  G  *  Y  L  F  P  F  F  S  V  V  F  L  L  L  *  I  K  D  R  A  P  L  F  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5680" stop="5357"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSLAHLDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLYG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="36814" PGL_stop="37581"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36814" e_stop="36928"/>
            <exon e_start="37041" e_stop="37581"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="0.922"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="36814" e_stop="36928" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="37041" e_stop="37581" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36814" stop="36928"/>
              <exon start="37041" stop="37581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTAGAGCAGCTCGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAA : ATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTT</gDNA_template>
            <first_frame> H  *  S  S  S  R  S  K  R  E  D  *  K  Y  N  F  S  G  A  V  *  G  L  *  N  R  K  F  I  A  L  A  N  S  S  Q  L  Q   : N  E  V  V  N  S  Q  H  V  I  I  Q  H  Q  G  S  R  K  W  I  P  V  E  D  R  G  C  E  S  G  R  E  R  G  *  F  *  Y  R  F  S  Q  E  H  V  P  *  G  *  M  E  G  T  G  G  S  F  *  N  H  G  L  R  *  T  A  *  K  C  *  C  C  Y  G  K  L  R  *  F  S  S  *  V  S  S  C  P  S  R  A  S  S  *  R  G  C  L  G  L  S  R  D  W  P  E  I  S  C  Q  *  R  H  S  Q  Y  A  S  S  *  R  R  G  L  I  S  F  F  F  L  F  L  G  I  D  M  F  W  F  G  N  G  D  *  G  S  *  L  *  G  L  R  G  L  L  *  Y  T  I  L  N  C  N  A  I  I  G  R  H  C  R  Y  Y  G  V  I  T  R  T  S  L   </first_frame>
            <second_frame>  I  R  A  A  R  E  V  R  E  R  T  E  N  T  I  S  P  A  P  S  K  A  Y  K  I  G  S  S  S  H  *  Q  I  H  P  N  F  K  :  M  R  L  L  T  H  N  M  L  S  S  N  I  K  G  V  A  N  G  F  P  L  K  I  E  V  V  K  V  V  E  K  E  V  D  F  N  I  D  F  L  K  N  M  F  H  K  V  E  W  K  A  L  A  E  A  S  R  T  M  G  Y  A  E  L  P  E  N  V  D  A  A  M  V  N  S  D  D  F  L  H  K  F  H  H  A  L  L  E  L  H  L  E  E  G  A  L  V  C  P  E  T  G  R  K  F  P  V  N  K  G  I  P  N  M  L  L  H  E  D  E  V  *  L  V  F  F  F  F  F  W  V  L  I  C  F  G  L  E  M  G  I  R  V  L  D  Y  R  V  *  G  V  C  Y  D  I  P  F  *  I  V  M  L  L  L  E  D  T  V  D  I  M  E  *  L  P  E  L  L  C  </second_frame>
            <third_frame>   L  E  Q  L  E  K  *  E  R  G  L  K  I  Q  F  L  R  R  R  L  R  P  I  K  S  E  V  H  R  I  S  K  F  I  P  T  S  K :   *  G  C  *  L  T  T  C  Y  H  P  T  S  R  E  S  Q  M  D  S  R  *  R  S  R  L  *  K  W  *  R  K  R  L  I  L  I  S  I  F  S  R  T  C  S  I  R  L  N  G  R  H  W  R  K  L  L  E  P  W  V  T  L  N  C  L  K  M  L  M  L  L  W  *  T  Q  M  I  F  F  I  S  F  I  M  P  F  S  S  F  I  L  K  R  V  P  W  F  V  Q  R  L  A  G  N  F  L  S  I  K  A  F  P  I  C  F  F  M  K  T  R  S  D  *  F  F  F  S  F  F  G  Y  *  Y  V  L  V  W  K  W  G  L  G  F  L  I  I  G  F  K  G  F  V  M  I  Y  H  F  E  L  *  C  Y  Y  W  K  T  L  S  I  L  W  S  N  Y  Q  N  F  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36908" stop="36928"/>
                    <exon start="37041" stop="37409"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHPNFKMRLLTHNMLSSNIKGVANGFPLKIEVVKVVEKEVDFNIDFLKNMFHKVEWKALAEASRTMGYAELPENVDAAMVNSDDFLHKFHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="43641" PGL_stop="38046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43641" e_stop="43271"/>
            <exon e_start="43183" e_stop="43043"/>
            <exon e_start="42723" e_stop="42499"/>
            <exon e_start="40699" e_stop="40492"/>
            <exon e_start="39307" e_stop="39171"/>
            <exon e_start="38896" e_stop="38816"/>
            <exon e_start="38636" e_stop="38570"/>
            <exon e_start="38489" e_stop="38046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.527" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.932" e_score="0.988"/>
          <exon-intron don_prob="0.934" acc_prob="0.981" e_score="0.985"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43641" e_stop="43271" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43183" e_stop="43043" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.893">
            <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42723" e_stop="42499" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.968">
            <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40699" e_stop="40492" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.906">
            <gDNA_intron_boundary i_start="40491" i_stop="39308" i_length="1184"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39307" e_stop="39171" e_length="137"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.527">
            <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="38896" e_stop="38816" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.932">
            <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="38636" e_stop="38570" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.934" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38569" i_stop="38490" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="38489" e_stop="38046" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43641" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42499"/>
              <exon start="40699" stop="40492"/>
              <exon start="39307" stop="39171"/>
              <exon start="38896" stop="38816"/>
              <exon start="38636" stop="38570"/>
              <exon start="38489" stop="38046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACTTCCACTTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA : GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG : GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT : GTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCG : ATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG : ACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTG : GTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACG : TTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAAATAATTTAACTTTGTACACCACAATAGTCATAGAACTAATCTACCTTCATGCAAATGTAGAATGATTTATGGTCTGTTTAGTTGGA</gDNA_template>
            <first_frame> Y  T  S  T  C  P  S  I  I  S  E  F  H  P  E  T  L  S  I  P  T  A  A  M  P  L  S  G  D  G  A  D  V  S  A  G  G  R  C  T  C  S  S  L  D  E  E  S  L  I  Q  N  C  Q  H  C  R  R  S  T  L  P  S  S  S  S  S  C  S  L  L  S  L  E  S  Y  P  V  Q  D  Y  D  K  L  W  R  I  F  S  A  S  V  K  G  F  T  I  G  A  G  L  K  G  G  L  A  I  F  A  V  L  S  R  L  R  R  R  K  S  M  S  S  A  K :   K  G  Q  M  V  S  S  R  D  D  V  V  L  A  L  K  E  T  L  R  Y  G  L  F  L  G  T  F  S  G  T  F  V  S  V  D  E  I  V  S  A  W  G  G  H  R  R :   T  A  K  W  R  A  L  L  A  G  A  I  A  G  P  S  L  L  L  T  G  N  T  Q  H  T  S  L  A  V  Y  I  L  V  R  A  A  V  L  A  S  R  C  G  I  K  S  K  R  F  G  R  I  C  K  P  L  T  W  A  H  G  D  I  F  L  M  C  L  S  S  S  Q  I  L :   S  A  Y  I  L  K  Q  D  S  L  H  P  S  Y  K  S  F  L  N  K  H  G  G  K  A  L  V  I  L  Q  G  V  K  D  L  A  C  G  N  S  V  M  N  L  E  A  I  E  N  H  Y  K  S  N  G  I  N  I  K  L  D  P  Q  M  K  V  P  C  S  :  I  V  H  E  N  Q  G  C  G  A  H  F  I  S  F  L  I  Q  A  Y  K  R  A  L  P  V  Y  L  P  V  Y  L  V  P  A  L  I  V  H  R  Q  G  I  L  K  R :   P  N  T  I  L  A  K  G  L  L  G  T  A  R  S  S  L  F  L  S  M  Y  C  S  S  A  W :   L  W  T  C  F  L  F  R  L  F  K  R  C  N  I  P  M  V  A  L  G  T  :  F  P  T  G  L  A  L  A  I  E  K  K  S  R  R  I  E  I  S  L  Y  C  L  A  R  A  L  E  S  F  V  T  C  M  A  D  V  G  Y  L  P  Q  S  E  K  L  K  R  G  D  V  V  I  F  S  M  A  T  A  I  I  M  H  C  Y  A  M  E  R  D  V  F  K  S  K  Y  L  N  V  L  D  W  V  F  G  V  P  L  P  P  Y  D  T  T  P  R  K  K  W  R  S  S  S  I  *  R  T  A  R  Y  N  C  T  Q  C  M  S  Q  K  N  N  L  T  L  Y  T  T  I  V  I  E  L  I  Y  L  H  A  N  V  E  *  F  M  V  C  L  V  G </first_frame>
            <second_frame>  I  L  P  L  A  L  R  *  S  Q  S  F  I  R  K  R  F  P  F  Q  P  P  L  C  R  C  P  A  T  E  L  M  S  L  P  V  D  D  V  R  A  L  P  S  M  R  K  A  *  S  R  T  A  S  I  A  G  D  R  L  S  L  P  L  R  H  L  A  L  C  L  A  S  N  L  I  R  F  R  I  T  T  S  F  G  E  Y  L  V  L  P  L  K  D  S  L  L  A  L  V  *  K  V  A  S  L  S  L  L  F  S  L  G  Y  D  V  G  N  R  C  P  L  R   : R  K  G  K  W  S  R  A  G  M  M  *  F  W  H  *  R  K  L  *  D  M  V  C  S  L  A  L  S  L  V  H  L  Y  Q  L  M  K  L  C  P  L  G  E  V  I  E   : G  Q  L  S  G  E  H  C  *  R  V  Q  L  Q  G  H  R  C  F  L  L  V  I  H  S  T  R  A  W  R  F  T  F  L  C  V  R  L  C  W  H  P  V  V  E  *  K  V  S  G  L  G  A  Y  A  S  L  *  L  G  L  M  E  T  F  S  L  C  V  Y  P  L  H  R  S   : C  Q  L  T  Y  *  S  K  I  V  C  I  H  L  T  N  P  F  S  T  N  M  V  A  K  L  W  L  S  C  R  V  *  K  T  W  H  V  G  T  L  *  *  I  W  K  Q  *  R  I  T  T  S  P  M  V  L  T  S  N  W  I  H  K  *  K  Y  P  A  R :   *  Y  M  R  I  K  D  V  V  R  I  S  F  H  F  *  F  K  P  T  R  E  L  C  R  F  T  F  Q  F  I  *  F  L  H  S  L  Y  I  V  K  A  S  *  K   : D  L  T  Q  F  W  R  R  V  S  S  V  Q  Q  G  L  V  Y  F  S  P  C  I  V  R  L  P   : G  C  G  H  V  F  S  S  G  C  S  R  G  V  T  S  P  W  W  H  W  E  R :   S  L  L  V  W  P  W  Q  S  R  R  K  A  E  G  *  R  F  H  S  I  V  L  L  G  H  L  R  V  S  S  R  A  W  L  M  L  V  I  C  L  S  L  K  N  *  R  G  V  M  L  *  S  L  A  W  Q  L  Q  L  S  C  I  V  M  L  W  R  G  M  S  L  N  P  S  I  *  M  F  L  I  G  C  L  V  C  L  F  P  P  M  I  P  L  L  A  R  N  G  V  P  H  P  Y  K  E  P  R  D  I  I  V  H  N  A  C  R  K  K  I  I  *  L  C  T  P  Q  *  S  *  N  *  S  T  F  M  Q  M  *  N  D  L  W  S  V  *  L   </second_frame>
            <third_frame>   Y  F  H  L  P  F  D  N  L  R  V  S  S  G  N  A  F  H  S  N  R  R  Y  A  A  V  R  R  R  S  *  C  L  C  R  W  T  M  Y  V  L  F  P  R  *  G  K  P  N  P  E  L  P  A  L  P  A  I  D  S  P  F  L  F  V  I  L  L  F  A  *  P  R  I  L  S  G  S  G  L  R  Q  A  L  E  N  I  *  C  F  R  *  R  I  H  Y  W  R  W  S  K  R  W  P  R  Y  L  C  C  S  L  S  A  T  T  *  E  I  D  V  L  C  E  :  E  R  A  N  G  L  E  Q  G  *  C  S  F  G  T  K  G  N  S  K  I  W  S  V  P  W  H  F  L  W  Y  I  C  I  S  *  *  N  C  V  R  L  G  R  S  S  K  :  D  S  *  V  E  S  I  A  S  G  C  N  C  R  A  I  V  A  S  Y  W  *  Y  T  A  H  E  L  G  G  L  H  S  C  A  C  G  C  V  G  I  P  L  W  N  K  K  *  A  V  W  A  H  M  Q  A  F  N  L  G  S  W  R  H  F  P  Y  V  S  I  L  F  T  D  P  :  V  S  L  H  I  E  A  R  *  S  A  S  I  L  Q  I  L  S  Q  Q  T  W  W  Q  S  F  G  Y  P  A  G  C  E  R  P  G  M  W  E  L  C  N  E  F  G  S  N  R  E  S  L  Q  V  Q  W  Y  *  H  Q  T  G  S  T  N  E  S  T  L  L   : D  S  T  *  E  S  R  M  W  C  A  F  H  F  I  S  N  S  S  L  Q  E  S  S  A  G  L  P  S  S  L  F  S  S  C  T  H  C  T  S  S  R  H  L  E  K  :  T  *  H  N  F  G  E  G  S  P  R  Y  S  K  V  *  S  I  S  L  H  V  L  F  V  C  L  :  V  V  D  M  F  S  L  Q  A  V  Q  E  V  *  H  P  H  G  G  T  G  N   : V  P  Y  W  S  G  P  G  N  R  E  E  K  Q  K  D  R  D  F  T  L  L  S  C  S  G  T  *  E  F  R  H  V  H  G  *  C  W  L  F  A  S  V  *  K  I  K  E  G  *  C  C  D  L  *  H  G  N  C  N  Y  H  A  L  L  C  Y  G  E  G  C  L  *  I  Q  V  F  E  C  S  *  L  G  V  W  C  A  S  S  P  L  *  Y  H  S  S  Q  E  M  A  F  L  I  H  I  K  N  R  E  I  *  L  Y  T  M  H  V  A  K  K  *  F  N  F  V  H  H  N  S  H  R  T  N  L  P  S  C  K  C  R  M  I  Y  G  L  F  S  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43641" stop="43271"/>
                    <exon start="43183" stop="43043"/>
                    <exon start="42723" stop="42499"/>
                    <exon start="40699" stop="40492"/>
                    <exon start="39307" stop="39171"/>
                    <exon start="38896" stop="38816"/>
                    <exon start="38636" stop="38570"/>
                    <exon start="38489" stop="38175"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1542</number_coding_nucleotides>
                  <number_encoded_amino_acids>514</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTSTCPSIISEFHPETLSIPTAAMPLSGDGADVSAGGRCTCSSLDEESLIQNCQHCRRSTLPSSSSSCSLLSLESYPVQDYDKLWRIFSASVKGFTIGAGLKGGLAIFAVLSRLRRRKSMSSAKKGQMVSSRDDVVLALKETLRYGLFLGTFSGTFVSVDEIVSAWGGHRRTAKWRALLAGAIAGPSLLLTGNTQHTSLAVYILVRAAVLASRCGIKSKRFGRICKPLTWAHGDIFLMCLSSSQILSAYILKQDSLHPSYKSFLNKHGGKALVILQGVKDLACGNSVMNLEAIENHYKSNGINIKLDPQMKVPCSIVHENQGCGAHFISFLIQAYKRALPVYLPVYLVPALIVHRQGILKRPNTILAKGLLGTARSSLFLSMYCSSAWLWTCFLFRLFKRCNIPMVALGTFPTGLALAIEKKSRRIEISLYCLARALESFVTCMADVGYLPQSEKLKRGDVVIFSMATAIIMHCYAMERDVFKSKYLNVLDWVFGVPLPPYDTTPRKKWRSSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40257" e_stop="39985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40257" e_stop="39985" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40257" stop="39985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTA</gDNA_template>
            <first_frame> *  I  *  I  *  G  L  I  V  K  F  L  K  *  K  *  G  L  L  E  T  *  A  I  S  F  Y  *  G  P  V  N  *  C  H  *  L  F  L  V  S  L  C  S  H  Y  F  M  I  *  I  K  L  L  C  R  L  M  N  F  I  H  I  I  V  L  F  P  F  L  L  F  V  N  Y  P  L  P  F  N  N  Q  H  A  *  *  S  N  T  F  L </first_frame>
            <second_frame>  K  S  K  F  R  V  *  L  S  N  F  *  N  K  N  E  G  S  W  R  L  E  R  Y  L  F  I  K  G  P  *  I  D  A  I  D  Y  F  *  *  V  Y  V  V  T  T  L  *  F  R  L  N  C  F  V  D  *  *  I  L  S  I  S  *  F  F  F  L  F  C  C  L  L  I  T  L  C  L  S  I  T  S  M  L  D  S  Q  I  L  F   </second_frame>
            <third_frame>   N  L  N  L  G  F  N  C  Q  I  F  K  I  K  M  R  A  L  G  D  L  S  D  I  F  L  L  R  A  R  K  L  M  P  L  T  I  S  S  K  F  M  *  S  L  L  Y  D  L  D  *  T  A  L  *  I  N  E  F  Y  P  Y  H  S  S  F  S  F  F  V  V  C  *  L  P  F  A  F  Q  *  P  A  C  L  I  V  K  Y  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="52441" PGL_stop="45475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52441" e_stop="51889"/>
            <exon e_start="47980" e_stop="47677"/>
            <exon e_start="45820" e_stop="45475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="51889" e_length="553"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47980" e_stop="47677" e_length="304"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47676" i_stop="45821" i_length="1856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45820" e_stop="45475" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="51889"/>
              <exon start="47980" stop="47677"/>
              <exon start="45820" stop="45475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAG : AACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACT : ATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</gDNA_template>
            <first_frame> T  S  K  A  D  F  D  I  F  P  S  I  I  P  L  N  A  I  K  I  L  L  S  F  T  I  L  *  N  L  E  *  L  E  F  I  L  F  G  L  N  T  *  K  V  S  H  L  *  K  I  Q  I  Q  F  C  F  L  V  D  Y  L  L  N  R  *  F  L  L  Q  L  H  L  V  F  *  K  Y  H  Q  L  M  I  P  V  S  Y  I  L  P  F  L  V  V  V  D  Q  F  S  G  E  K  K  R  V  F  V  P  V  L  G  V  I  S  C  V  *  V  C  H  L  R  R  I  L  M  L  L  G  I  P  V  N  V  C  *  V  M  E  T  R  V  Q  R  W  K  S  L  V  S  A  M  G  L  *  R  S  E  I  L  G  Y  G  D  V  V  Q  *  T  P  A  N  I  C  G  L  E  Q  L  L  Q  W  Y  Q   : E  L  L  L  L  H  L  K  D  *  S  W  N  I  *  F  V  V  N  R  S  T  S  W  S  S  S  K  Q  L  Q  L  L  K  A  *  E  A  F  G  K  G  T  W  L  I  Y  F  V  L  L  L  L  R  Q  L  I  F  V  L  L  T  H  T  E  S  N  S  *  D  Y  Q  E  M  K  K  L  L  T  S  S  G  L  L  L  V  L  Q  L  V  *  L  L  L  L  C  A  Y  H  W  T  L :   S  G  P  S  *  W  H  G  V  E  K  P  W  V  V  W  L  E  L  F  N  M  *  S  E  L  K  D  S  S  L  F  I  R  D  *  Y  P  P  F  *  V  W  P  Q  Q  R  L  F  S  M  V  Y  M  T  Y  *  N  Q  L  I  C  I  H  L  K  A  E  K  E  *  S  I  *  R  I  R  E  Q  S  S  M  L  L  T  S  L  S  W  D  L  *  G  P  Y  F  M  V  L  L  L  V  L  V  L  K  P  Q  L  I  H  L  R  S  L </first_frame>
            <second_frame>  Q  A  K  L  T  L  T  F  S  L  P  L  S  H  *  M  P  S  K  F  S  S  A  S  L  Y  C  R  I  *  N  D  W  S  S  Y  Y  L  V  *  T  L  R  K  S  H  T  C  R  K  S  R  Y  N  F  V  F  W  W  I  I  Y  *  T  V  D  S  F  F  N  Y  I  *  F  S  K  N  I  I  N  *  *  F  Q  *  V  T  F  S  H  F  S  S  *  W  T  N  F  P  A  R  K  K  E  C  S  C  R  Y  W  G  *  F  L  V  F  E  F  V  T  *  E  E  Y  *  C  C  W  E  F  Q  *  M  F  V  E  *  W  R  R  E  S  K  G  G  R  V  *  C  R  R  W  G  C  E  E  A  K  Y  W  V  T  G  T  W  C  N  E  H  Q  Q  T  F  V  G  W  S  S  C  C  N  G  I  K  :  N  C  C  C  S  T  *  K  T  K  A  G  I  Y  S  S  W  *  T  E  A  P  L  G  A  H  Q  N  N  C  S  Y  S  R  L  E  R  L  L  E  R  E  L  G  *  Y  T  S  Y  C  S  F  *  G  S  *  F  L  C  F  *  H  I  Q  K  A  T  P  K  I  I  R  K  *  R  N  Y  *  H  R  A  V  C  C  W  C  C  S  W  C  D  C  Y  C  Y  V  L  T  T  G  H   : Y  P  D  Q  V  S  G  T  G  W  R  S  L  G  W  C  G  W  S  F  S  T  C  D  Q  N  *  R  I  L  L  S  L  *  G  T  S  T  L  H  F  E  Y  G  P  S  S  G  C  F  L  W  C  I  *  H  I  K  I  S  L  F  A  F  T  *  R  Q  K  K  N  R  V  Y  E  E  S  G  S  R  A  Q  C  F  *  P  A  *  V  G  T  Y  E  D  L  T  S  W  C  Y  C  W  C  L  C  *  S  R  N  L  S  I  *  G  H   </second_frame>
            <third_frame>   K  Q  S  *  L  *  H  F  P  F  H  Y  P  I  E  C  H  Q  N  S  P  Q  L  H  Y  T  V  E  F  R  M  T  G  V  H  T  I  W  F  K  H  L  E  S  L  T  L  V  E  N  P  D  T  I  L  F  S  G  G  L  F  I  E  P  L  I  P  S  S  I  T  S  S  F  L  K  I  S  S  I  D  D  S  S  E  L  H  S  P  I  S  R  R  S  G  P  I  F  R  R  E  K  K  S  V  R  A  G  I  G  G  N  F  L  C  L  S  L  S  L  K  K  N  T  D  V  V  G  N  S  S  E  C  L  L  S  N  G  D  E  S  P  K  V  E  E  S  S  V  G  D  G  V  V  K  K  R  N  I  G  L  R  G  R  G  A  M  N  T  S  K  H  L  W  A  G  A  V  A  A  M  V  S  R :   T  V  V  A  P  L  E  R  L  K  L  E  Y  I  V  R  G  E  Q  K  H  L  L  E  L  I  K  T  I  A  V  T  Q  G  L  R  G  F  W  K  G  N  L  V  N  I  L  R  T  A  P  F  K  A  V  N  F  C  A  F  D  T  Y  R  K  Q  L  L  R  L  S  G  N  E  E  T  T  N  I  E  R  F  V  A  G  A  A  A  G  V  T  A  T  V  M  C  L  P  L  D  T  :  I  R  T  K  L  V  A  R  G  G  E  A  L  G  G  V  V  G  A  F  Q  H  V  I  R  T  E  G  F  F  S  L  Y  K  G  L  V  P  S  I  L  S  M  A  P  A  A  A  V  F  Y  G  V  Y  D  I  L  K  S  A  Y  L  H  S  P  E  G  R  K  R  I  E  Y  M  K  N  Q  G  A  E  L  N  A  F  D  Q  L  E  L  G  P  M  R  T  L  L  H  G  A  I  A  G  A  C  A  E  A  A  T  Y  P  F  E  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52421" stop="51889"/>
                    <exon start="47980" stop="47677"/>
                    <exon start="45820" stop="45476"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFPFHYPIECHQNSPQLHYTVEFRMTGVHTIWFKHLESLTLVENPDTILFSGGLFIEPLIPSSITSSFLKISSIDDSSELHSPISRRSGPIFRREKKSVRAGIGGNFLCLSLSLKKNTDVVGNSSECLLSNGDESPKVEESSVGDGVVKKRNIGLRGRGAMNTSKHLWAGAVAAMVSRTVVAPLERLKLEYIVRGEQKHLLELIKTIAVTQGLRGFWKGNLVNILRTAPFKAVNFCAFDTYRKQLLRLSGNEETTNIERFVAGAAAGVTATVMCLPLDTIRTKLVARGGEALGGVVGAFQHVIRTEGFFSLYKGLVPSILSMAPAAAVFYGVYDILKSAYLHSPEGRKRIEYMKNQGAELNAFDQLELGPMRTLLHGAIAGACAEAATYPFEVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="65380" PGL_stop="64031"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65380" e_stop="64734"/>
            <exon e_start="64151" e_stop="64031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="65380" e_stop="64734" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64733" i_stop="64152" i_length="582"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64151" e_stop="64031" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65380" stop="64734"/>
              <exon start="64151" stop="64031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGTTTTGCCTCAATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCTACAGTCACCTACATTGCCTGTCATTCAG : GTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGTTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGAGAACTGTTGATGCCAAAGGGCTACCTTTAGGGATGGATTATG</gDNA_template>
            <first_frame> H  S  F  A  S  I  S  R  K  Q  *  F  P  F  F  G  *  Y  F  *  H  T  S  G  G  *  I  Q  Q  I  *  Q  M  F  Q  L  Q  R  S  *  T  Y  S  Y  *  P  D  K  A  T  C  P  A  E  V  V  S  L  T  M  A  K  M  A  W  L  M  R  H  G  M  V  *  F  H  Q  N  V  N  P  T  Q  T  S  S  D  S  M  Q  D  L  H  G  L  K  L  R  N  H  F  T  K  T  *  I  W  V  K  F  V  E  L  G  Q  V  C  H  L  P  I  Q  F  *  R  E  I  Q  V  L  E  *  S  V  W  C  L  V  L  L  E  E  Q  I  *  A  N  G  L  V  A  V  F  C  I  I  I  *  *  G  E  Q  K  L  L  C  K  E  V  E  N  F  K  L  C  C  G  T  K  V  R  V  I  Q  R  L  L  K  M  P  N  C  T  D  L  D  *  R  D  Y  S  R  M  C  S  V  I  Y  S  H  L  H  C  L  S  F  R :   W  H  W  H  H  L  L  D  L  I  W  S  R  L  E  K  L  N  *  V  L  I  F  Q  M  *  E  L  L  M  P  K  G  Y  L  *  G  W  I  M </first_frame>
            <second_frame>  T  V  L  P  Q  F  Q  E  N  N  D  F  L  S  L  V  N  T  S  N  T  H  Q  V  G  K  Y  S  R  S  S  R  C  F  N  F  K  G  P  K  H  I  H  I  S  R  T  K  Q  H  V  R  P  R  W  C  H  *  P  W  P  K  W  P  G  *  *  D  M  G  W  C  D  S  T  R  M  S  I  Q  L  K  H  P  Q  T  Q  C  R  T  Y  M  G  *  S  S  G  T  T  S  P  R  H  R  F  G  *  S  L  W  S  W  A  R  Y  V  I  C  Q  F  S  S  E  E  R  S  K  Y  W  S  D  R  F  G  A  L  C  Y  W  R  N  K  Y  K  R  M  G  S  W  Q  C  S  V  *  S  Y  D  K  E  N  R  S  C  F  A  R  R  W  K  T  S  S  F  V  V  V  P  R  *  E  *  Y  R  D  S  *  R  C  Q  I  V  Q  I  *  T  E  E  I  I  Q  E  C  A  P  *  S  T  V  T  Y  I  A  C  H  S   : G  G  I  G  I  I  Y  W  I  L  Y  G  A  G  *  K  S  S  T  E  Y  *  S  S  K  C  E  N  C  *  C  Q  R  A  T  F  R  D  G  L   </second_frame>
            <third_frame>   Q  F  C  L  N  F  K  K  T  M  I  S  F  L  W  L  I  L  L  T  H  I  R  W  V  N  T  A  D  L  A  D  V  S  T  S  K  V  L  N  I  F  I  L  A  G  Q  S  N  M  S  G  R  G  G  V  I  N  H  G  Q  N  G  L  A  N  E  T  W  D  G  V  I  P  P  E  C  Q  S  N  S  N  I  L  R  L  N  A  G  L  T  W  V  E  A  Q  E  P  L  H  Q  D  I  D  L  G  K  V  C  G  V  G  P  G  M  S  F  A  N  S  V  L  K  R  D  P  S  I  G  V  I  G  L  V  P  C  A  I  G  G  T  N  I  S  E  W  A  R  G  S  V  L  Y  N  H  M  I  R  R  T  E  A  A  L  Q  G  G  G  K  L  Q  A  L  L  W  Y  Q  G  E  S  D  T  E  T  L  E  D  A  K  L  Y  R  F  R  L  K  R  L  F  K  N  V  L  R  D  L  Q  S  P  T  L  P  V  I  Q  :  V  A  L  A  S  S  I  G  S  Y  M  E  Q  V  R  K  A  Q  L  S  I  N  L  P  N  V  R  T  V  D  A  K  G  L  P  L  G  M  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65378" stop="64734"/>
                    <exon start="64151" stop="64032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFCLNFKKTMISFLWLILLTHIRWVNTADLADVSTSKVLNIFILAGQSNMSGRGGVINHGQNGLANETWDGVIPPECQSNSNILRLNAGLTWVEAQEPLHQDIDLGKVCGVGPGMSFANSVLKRDPSIGVIGLVPCAIGGTNISEWARGSVLYNHMIRRTEAALQGGGKLQALLWYQGESDTETLEDAKLYRFRLKRLFKNVLRDLQSPTLPVIQVALASSIGSYMEQVRKAQLSINLPNVRTVDAKGLPLGMDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="70181" PGL_stop="68193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70181" e_stop="69517"/>
            <exon e_start="68676" e_stop="68193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="70181" e_stop="69517" e_length="665"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="68676" e_stop="68193" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70181" stop="69517"/>
              <exon start="68676" stop="68193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACATCTATATATACAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG : CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATATTTTAAGCATGCTCGTTACGGGTAAATGAGTAAGTC</gDNA_template>
            <first_frame> E  T  S  I  Y  T  G  K  Q  K  P  *  P  *  F  Y  I  N  H  Y  Y  S  S  S  P  A  Q  T  H  H  P  S  L  F  F  S  R  K  K  L  C  F  F  H  L  K  N  C  F  L  S  F  S  F  E  F  H  C  E  W  *  K  S  S  R  T  C  *  *  S  P  L  *  H  Q  K  G  G  S  L  F  H  L  L  S  P  L  A  L  A  K  K  A  G  T  S  A  A  S  A  L  T  L  K  R  C  S  L  F  P  Q  F  L  E  I  V  I  F  S  S  F  C  S  D  L  Y  D  *  K  *  I  L  E  N  Y  Q  K  K  I  *  N  *  K  Q  D  V  A  L  Q  A  K  E  E  S  N  R  K  R  *  P  D  F  D  *  Y  Y  G  S  R  K  C  R  S  D  P  V  C  C  *  *  R  G  A  C  G  *  C  Y  *  Y  C  N  E  S  L  C  *  G  R  P  P  S  C  S  W  F  *  L  Q  *  L  C  A  L  L  P  Q  C  W  H  *  S :   S  W  S  M  G  D  Y  W  I  A  W  S  S  E  L  H  A  V  Q  E  V  I  T  G  R  E  N  S  R  W  W  *  A  V  T  N  P  E  G  S  W  K  L  E  D  M  V  *  Q  V  N  Q  *  Q  D  S  I  S  L  I  K  *  T  R  S  F  E  I  F  L  L  C  V  C  R  N  S  C  V  H  M  R  P  L  I  N  K  C  S  I  C  V  F  N  N  G  K  V  K  P  F  V  S  F  *  V  F  E  V  C  S  M  C  V  S  S  L  N  W  V  N  S  L  V  G  V  S  V  V  K  L  Q  A  D  I  F  Y  E  R  N  P  V  L  F  A  F  I  F  I  F  *  A  C  S  L  R  V  N  E  *  V </first_frame>
            <second_frame>  K  H  L  Y  I  Q  E  N  K  N  P  N  P  N  S  I  *  T  T  I  I  L  H  R  Q  P  K  L  I  I  H  R  C  F  S  L  E  K  N  F  V  S  F  I  L  R  I  V  F  F  L  F  L  S  N  S  I  V  N  G  R  N  P  Q  E  L  V  N  D  L  P  F  N  T  K  K  G  D  L  C  F  I  C  F  L  L  W  L  L  Q  R  R  L  V  L  P  L  P  R  R  *  P  L  N  A  V  R  F  S  H  N  F  S  K  S  *  F  F  L  L  F  A  L  I  C  M  I  E  N  K  F  W  K  I  I  R  K  K  F  E  I  K  N  K  M  L  L  Y  K  P  K  K  N  Q  T  G  K  G  N  R  I  L  I  S  I  T  V  L  G  S  A  G  P  I  R  F  V  V  N  E  E  E  L  V  A  D  V  I  D  T  A  M  K  A  Y  A  R  E  G  R  L  P  V  L  G  S  D  F  S  N  F  V  L  Y  C  P  S  A  G  T  E   : A  L  G  P  W  E  T  I  G  S  L  G  V  R  N  F  M  L  F  K  K  S  S  Q  G  E  K  T  A  D  G  G  K  Q  S  P  I  R  K  G  A  G  S  W  K  T  W  F  N  K  S  I  S  S  K  I  A  S  H  *  S  S  R  L  G  L  L  K  S  F  F  Y  A  S  V  A  I  R  V  F  T  C  D  P  *  *  T  S  A  V  F  V  F  S  I  M  A  K  *  N  P  L  S  A  F  E  F  L  K  C  V  Q  C  V  L  V  L  *  T  G  *  T  V  S  L  V  F  Q  *  S  N  Y  K  Q  I  F  S  M  K  G  I  L  F  S  L  H  L  Y  L  Y  F  K  H  A  R  Y  G  *  M  S  K   </second_frame>
            <third_frame>   N  I  Y  I  Y  R  K  T  K  T  L  T  L  I  L  Y  K  P  L  L  F  F  I  A  S  P  N  S  S  S  I  V  V  F  L  S  K  K  T  L  F  L  S  S  *  E  L  F  S  F  F  F  F  R  I  P  L  *  M  V  E  I  L  K  N  L  L  M  I  S  P  L  T  P  K  R  G  I  S  V  S  S  A  F  S  F  G  S  C  K  E  G  W  Y  F  R  C  L  G  V  D  P  *  T  L  F  A  F  P  T  I  S  R  N  R  D  F  F  F  F  L  L  *  F  V  *  L  K  I  N  F  G  K  L  S  E  K  N  L  K  L  K  T  R  C  C  F  T  S  Q  R  R  I  K  P  E  K  V  T  G  F  *  L  V  L  R  F  S  E  V  P  V  R  S  G  L  L  L  M  K  R  S  L  W  L  M  L  L  I  L  Q  *  K  L  M  L  G  K  A  A  F  L  F  L  V  L  T  S  V  T  L  C  F  I  A  P  V  L  A  L  K  :  L  L  V  H  G  R  L  L  D  R  L  E  F  G  T  S  C  C  S  R  S  H  H  R  A  R  K  Q  P  M  V  V  S  S  H  Q  S  G  R  E  L  E  A  G  R  H  G  L  T  S  Q  S  V  A  R  *  H  L  T  D  Q  V  D  S  V  F  *  N  L  S  S  M  R  L  S  Q  F  V  C  S  H  A  T  P  N  K  Q  V  Q  Y  L  C  F  Q  *  W  Q  S  K  T  L  C  Q  L  L  S  F  *  S  V  F  N  V  C  *  F  F  E  L  G  K  Q  S  R  W  C  F  S  S  Q  I  T  S  R  Y  F  L  *  K  E  S  C  S  L  C  I  Y  I  Y  I  L  S  M  L  V  T  G  K  *  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69832" stop="69517"/>
                    <exon start="68676" stop="68498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLLFALICMIENKFWKIIRKKFEIKNKMLLYKPKKNQTGKGNRILISITVLGSAGPIRFVVNEEELVADVIDTAMKAYAREGRLPVLGSDFSNFVLYCPSAGTEALGPWETIGSLGVRNFMLFKKSSQGEKTADGGKQSPIRKGAGSWKTWFNKSISSKIASH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70129" stop="69878"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTIILHRQPKLIIHRCFSLEKNFVSFILRIVFFLFLSNSIVNGRNPQELVNDLPFNTKKGDLCFICFLLWLLQRRLVLPLPRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 18248 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2027 bytes was the average size of a spliced alignment
$ 12096 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2016 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:30:49
-->
