<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 21:33:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0198I15-Ox2M1/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-cdUGba/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cdUGba/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334831" ref_strand="+" ref_description="SGN-U334831        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pyruvate dehydrogenase E1 component beta subunit, chloroplast, identical to pyruvate dehydrogenase E1 beta subunit (Arabidopsis thaliana) GI:2454184; identical to cDNA pyruvate dehydrogenase E1 beta subunit mRNA, nuclear gene encoding plastid protein GI:2454183 | chr1:10584144-10586615 REVERSE | Aliases: None(evalue: 1e-34, score=144) genbank/nr: gi|15220670|ref|NP_174304.1| pyruvate dehydrogenase E1 beta subunit -related [Arabidopsis thaliana] gi|25284456|pir||C86425 probable pyruvate dehydrogenase E1 beta subunit - Arabidopsis thaliana gi|12321636|gb|AAG50862.1| pyruvate dehydrogenase E1 beta subunit, putative [Arabidopsis thaliana] gi|13605515|gb|AAK32751.1| At1g30120/T2H7_8 [Arabidopsis thaliana] gi|20334776|gb|AAM16249.1| At1g30120/T2H7_8 [Arabidopsis thaliana](evalue: 8e-33, score=144)">
      <seq>aaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaacttgggagtcctagttaaggtgagatgtttgttgttttgccttctacccacaccaaaatggtgcttggaatcgttatgtactggtaaggtaactagacttcatagaaacattatcattgttttgtttcgttaaagataaagatttaggtctattttataatcaaagctggagttgtcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198I15-Ox2M1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198I15.1" temp_strand="-" temp_description="C04HBa0198I15.1  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="29556" stop="28429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29256" g_stop="28710" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198I15.1" gen_strand="-" ref_id="SGN-U334831" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29256" e_stop="28710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTACATTGCTAAAAGTATTAAATT</genome_strand>
        <mrna_strand>AAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cdUGba/lycopersicum_combined_unigene_seqs" ref_id="SGN-U314164" ref_strand="+" ref_description="SGN-U314164        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | transketolase family protein, similar to SP:O66113 Pyruvate dehydrogenase E1 component, beta subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, C-terminal domain | chr2:14575890-14578048 REVERSE | Aliases: T31E10.7, T31E10_7(evalue: 3e-177, score=618) genbank/nr: At2g34590(evalue: 2e-175, score=618)">
      <seq>ctcttttctaatctttccttagattaaatcgccacaacctccttgagcactttgttttcttcgccgcaactcatttttttctctattcactgagaatatatttatagttgtaagggtcatttgaatcatcattctgatctgcattttctcttcgtttgttcgaatcaagaagctaattttctttgtggggtttactagatggctgctattatacaaggaattggtgctgctactgcactaacatcagccaattctttggataccaagaagtcacttttcgctaattctcgcagatctttgtcagagaggaaaggaaggttatttgtggctagatctgatgggcgtttaagcagtggtttgaatggacgtggaggaagagctgaacaattaatcactaatgctgttgctgcaaaagaagatgctgctgcagcttctacttcattcaagccagggcatgaactgttgctctttgaggccctccgcgaaggcctggaagaagagatggacagagatcccactgtttgtgtaatgggtgaagatgtcggtcattacggaggttcgtacaaggtgactaaaggccttgccccaaaatatggtgatctcagggttcttgatactcctattgctgagaactctttcactggtatgggcattggagctgcaatgactggcttgcgtccagttattgagggaatgaacatgggatttcttcttctggccttcaaccagatatctaacaactgcggtatgctccactacacatctggtggccagtttaagataccagttgtcatccgaggtcctggtggagttggtcgacagcttggagcagagcactctcaacgccttgagtcatacttccagtcaattcctggaatccagatggtcgcctgttcaaccccctacaatgctaagggcttgatgaaggcagctatcaaaagtgataaccctgtgattctgtttgagcatgttttgctctacaacctcaaggaaagaattccagatgaagagtatgtgctgaatcttgaagaagcagagatggtacgacctggggagcatgtaaccattctaacttattccaggatgaggtatcatgtaatgcaggctgccaagacacttgtgaacaagggttatgatcccgaggtcattgatattaggtctctgaaaccatttgatctttacaccatcgggaagtcagtgaaaaagactcatcgtgtgctcattgtcgaggaatgcatgcgcacaggaggtattggggccagcttgacagccgctataactgagaactttcacgactatctagatgccccaatcgtatgtctgtcgtcacaggatgtgccaaccccttatgctgggacgttagagaattggactgttgtccaacctccccagattgttactgcagttgaacaactttgccagtgatcaagtggtagaagttttatgataatcatgccattatgttcagttgcttatgtcataatttaaggctcaacttctgatcgatttttattgtctgattttgctagagattttattttttggaacttgggagtcctagttaaggtgagatgtttgttgttttgccttctacccacaccaaaatggtgcttggaatcgttatgtactggtaaggtaactagacttcatagaaacattatcattgttttgtttcgttaaagataaagatttaggtctattttataatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198I15-Ox2M1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198I15.1" temp_strand="-" temp_description="C04HBa0198I15.1  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="38483" stop="28446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38183" g_stop="37880" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37625" g_stop="37522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="408" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37386" g_stop="37343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="452" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30005" g_stop="28738" g_length="1268"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="1720" r_length="1268" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198I15.1" gen_strand="-" ref_id="SGN-U314164" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38183" e_stop="37880"/>
          <exon e_start="37625" e_stop="37522"/>
          <exon e_start="37386" e_stop="37343"/>
          <exon e_start="30005" e_stop="28738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAGGTTTGTTGCAATTTATTAGTCTTTTAGCTAGTATTCGAAATTGGGTTTTGTTAGTATTGCTTAAATTTATGTTCTTTTTTTGTTGATTATGTTTGTTTGGTTCTCTTTTCTGATTCAGGGTTTATCTAATCTTTGTGTCTTACGGTTGTTTTTGATCGGAAGTATTAATTGGTCCACTAAAAGAATGTTTTATTTTCCAGTTAGTGCTTGTTTACTCTCCAAATTTCAGTCATTTATCTTCCATTGGTTTGCAGAGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCTGTTAGTATTCTTTACTCTCTCATTATAATTGTGACGCATATGATTGATTATTTACTAGTAGAAATGTGCTTAAATTAGCAAATTTTGTTTTCTTTTAGACTTTGAGATTTGGTGTTGCATGTAATTCTTTTACAGGCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGGGTATATTTACTACTTCTCTAAGTTGTACTTGCATATCTTGACAGTTTAAATTGCTTCCTTCTGGTTGCCACTTCATTTGTCTCTCCTTATCTGAAACTTTATGTACGCGTGGTGGCTTGTCAGCAGGTGAGATTAGTTTTTTTCTTTAAAAATATCTTGATTAAGTTGGGCAAGGTTACATTCTTGTCTTGTAAAGAGGTTGGCTGGTAGGATTATGGTTTTCTTTTATTGTATGATTAAATTCAGCTGCTAATCTCGATGGTGTTGTCAAAGGAAATAGAGAAGTCAATAGAAGTTGCTGTTTTGCTTCAGATTATGCTAATTCATCCTGTGATAAACATGTCTAGTTCTCCTCCTTGTTCTGAATTTTGATAGCAGAAACAAAAGAAAGAGTGATGGTGGGAGTGATGTGTTCTTTTTTGTTTGGATTAGTACTGGCGTACTGGGGATATAAATAAAAAAGAAAAGAAAAGAAAGAAAGAAAGGATGGGCTACATAGTGAACAAAAGTTCAACCCCTCTTACCAACCAAAAGTAGGCTTACATAGAGAAATTCATTTTTAGTATATCTTATATTTAAGCTACACAGGTCTCCCGTAGACTTGAAAAAACGAGTTACTCTTTTTTCACTTTCTTCTTCTGGTACTTCCAATTATTAATTTATTATTTGCTCAAAAATTTTGAAGGTTCTTATTTGTTGTAATTTTTTGCTATGTTTATGGTCAAAAGAAATGATTTCCATAGCCATTCCAATAATACTTCTTTTGATAAGTATATAATTAAACTTTTTTCGAGTCATATCGTTTGGTGTTGGGGATGGGATATATATCTATATATGTATGAGAAAACTTATCCCATCGTTGCTGTATAAATGGTAGGATAAATAATTCCAAAGACTAATTAATATCCCTAACAAAAAGAATGATAAAATAGCCTTGTTGTTTATCCTGGGATTATTATCATCTATCCCTCATACCAAGTGACCCGTAAGAGATTACAATGACAACATACCCAGTGTAATTCCACAAGTGGGTCTGGGAGGGCAAATGTACGCATACCTTCTCTCTATCTTTTAGTAGAGAGGTTGTTTCCAATAGACTCTCGACTCAAAAGTAGTGTCATTAAAGCATGATATAAAAGAAAATAACCACTGCAAAATAGCAAGATAAATGAAACACATGAAGTAATATGTAGTAGAAAAAATGGAGAATAAGAACTATGCAAATACTAGATGTGATTACTAATTAAGGAGAGGATGAGTCGAGGAGATTAACCCTCGAGATTAACCCTCCAACCAAACTCTCACATTTCCTCTTCACCTGTCTGAACCACCTCTGTCTCACTTCTCTAATCTTATCCTTCACGGAGGCCACTTTCGCCTTGTCCTGTGTATATTCATTCCTAATCTCATCTCTCCTAGTATGCCTGCATATCCATTTGGGCATCCTCATTTATGCTATCTTCATCTTCTGTATGTGTGCATTCTTGACTGGCCAACCCTTTACCTCGCACTACAGTCTAGGTTTAACTATCACTCAGTAGAACTTACCTTTTTAAGTCTTGGTGAAACATTTTGTCACACAGTACTCTGGATACAAGTGCCCATTTCATTGTTAATCTTCCCATTTCCTTGGATTATAGACCCAATATACTTGAAACTCTCCCTTGGGTATGACTTGTCTATCAATCTTCACTTCCATCCCCTCCTCCACTATAGGCATTGTGTGATTGAACTTGCAGTCCAGGTCCATTGGCGTAGCCACATGGTTGTATACCCTTCGTTGGAAAAAAAAATATCGTACATAGTACATACAAGTAAGTATATACAAGAAAATGATACATGAAATGATTAAATAACATTTTTTGGACACCCTTGAGATAACATGCTGTTAATGCCCAGTATTTTCACCTCCTTTGAATGGGGAAGTGTTCGTGTGTTCGAATCTCACTAGTTCTACTTTTTGAAACGAGCTTTTGTTGTGCTATTTCTGGACACCCTTCTGGTTCCGCCACTGCCAGTTACTCTATTTTAATCCTACGTTTGCTTAACCTGAAACCTTTAGATTCTAGGGTCTGTTTGCCAAACTACTCTATCATTAACTCCACCACGCGTCTCATAGATATCAATACAGATCGATACTATGTCATTTGCGAATAACATACATCAAGATGCCACCCCTTAAATACGCCACGTCAATTCGTCCATCACTTTGGTTAAAAGAATTGCGATGTATGATTGAAGTGCCCAACAAAATAATGTACACCACATGCTAGCCTGGACTTCGGATTTAGAGGTTGTGATAGGTGGAGTTTTCTAAGTTAAGTCATACACTCACTATATATTTGTGAGGGAGGACTCTGACTTTCCACACTTATCAACCTGAAATCCTAGGAAGGAAAGATGTGTTTCTCTTCTTGCCTAGAAACAAGAGAGGTAATGTTTGACATCTGAAGATCCAAGGCAGAAAAGATTGTCTGTCAATTTGTGTTTGTCAAGAAGATGTGGACCATCTCCTATTGCAGTGTGCTGCTGCTACTAGTTGTAGTTAATGGTTGTGAACTGGTCCAAAATGCCATGGACAACGTTGGGCACATCAATGAATTTGTTGTGCAACTAGACTTTCAGAAGAAGGATGGGAAGACATAGGCATGGTGCACCTTTAGCCCTAGTGTGAGTTCTTTAGAAGGAGAGCAATCAGAGAGCGCTTATAGACTGATTTGACTATCCAACTCTAAGAGATTGACTATCCAAAAAGATAAAAAATAAACCTAAGATGTTGCTGCGAGCCTGCAACTATACAACTATTTTACGAAGATTAATTCGTATTTCTAGCTTGTAAGTATCTGACGGAATTTTAGAGTGTCCTTATCATTTATTTTATTTCATATACACTAGACACAGAGGCGAATCGATGATTTCGAGTCTCTTGGTGCCAAGTAGGTTAATCAGTTAAATTAATTTTAGGCTTCAATCGAATTATTCATCTTTCCGGTCTATGAAATATGAACAATAATGAGATGACAATTTTTGTATTATATATACTACAAATTCTTTAAGCATGGGTCATGCTAATCTTCTCCGCATTATTTCAATTTTATTAGATGTCTCCAACAAAGCAAAAGTTTATCATTTTAATTTTAGATGCTCTTGTTGAAAGTCGAATTCAAGATCGACAACGGAAGATTTTTTTTCTCACTTATATTTGGGAAAAATCACTTTAGCTCAATTGTTTGACTATTTGAACTCTCACCTTACCATTTTCCCTTCCCTTCCCTACCTCCATATAAAAATACAAATTTTCACCCCACATTTGATTGAGATCATAAAGTAAAGAAAGTTAAAACTTTCAATTATACTATAAATATCATAAATATTCATCCTTCATTTATAATTGTACTCGACAAGTTTTTACATTTTGAAAACGATCAATGACAATATCAATGCGTATATTTATAAATGGATCACGTTTTATGTAACACGCTAGTCCAATATACTTATAAATTACTACTCCATATTAAAACAACTATTAGAAACAAACAAAAAAAATAATGTGTCGCTATCATATTAAGGAAGCAAGTTAAAATTGCAAAGGGCCGTCAGCGAGCAAGTTAAAGTTGCAAATTAAAAAACTCCTAGGGCCTCAGCGAGATTCGACCTCGCGATCTCCGTATTAGAATATGACCCTTAGCCAGCCACGCCACAAGGACTTTTGGTTCCCTGGGTGGCACGTTTAATATTTGTAATTATATTGTCGATATATACCTATATATATTAGAGTTTCCGTCGAAGCCCGTGGGAGGTGTATCACCCCCACGAACCTTAGTAGATCCACCCCTGACTAGACAGCTACCATAAGGGCACAACTATATTGAATTCTTAAAATGCATTGTACCTTGCACTCCATTTTACTGCTTGCTGCTTGGATCTTGTCATGTGACTGGCTCACAAAAAGAAGAGAAAGAATGCAACTATAGGATCTCAGAGAGAAACACCTGAGACCAACATAAAATGTGTCTCACTTTTGGGATCTCATCGTCTCCTATTCTTAATGATAAAACAAATTCTCTTCAACTTTATATGGATTCATAGAGGCCCTTGCTAATAGTGTTTGTCAACCCTTGTTTATTTTAGATCCTTACTTAAAGGCCAAGTTATTGCCTTTTTGTTTTATTTGTAACTTCTTACCGAGCTATAACTCCAACACAAATCTACTTTTACGTATGGGGATGTAGGTCAATAACACTTTGTTAGTGTTACCCTAATTTATTTTAGATCTGTACTTAAAGGCCAACTTATTGCCTACTTGTTTTATTTGTTCGAGATTTTACAGTATGTACATAATGCACATACATAAATGAACTATAAGACAATATGTATTATTGTACTTGTACACATCATATGTGTAGTGATTGTTATGTGTACTTGCAATAAAATTGTGCCCAAGTATTTCTTGTCTTGATGTGACTTCATTTTTATGCAAGCTTTTTCTAATATCTAGTAATTCTTGTAGAAATGGCAATTGAGGTTTTGTACTCCTAAAGTTGACACAAAATAGAAAACAAAAAACCGCAAGAACTTCCATTAGTCTTATCTCTTTTTTTGTGTGTAGCATACCTCTAAGAAAGAAACTCATCTATTCCAATTCAAATATGATGATTCACCATTGTTGGTCGATGGAGTTTGGCCTTGTCATGTAGGTGAATTACCTGATTTACACGTCAACACCATATCAGTTCAATTTGGGTCAAAGACATTTAGGAATTATAACAACATAAAGCAAAATGGCGAGTTGATCATCCATATGGAAGATGTACTCAGAAGTATCATTAAGAAAGGTGCTTTGAGATATGCTTTCTTGGTGTAATGTAAAATAGAGATTTATGATATGATGGAGGCCTCTGTTCCTTTTACCAATGATGCTGAGCTGAAATCAAATACTTTTTGCAGTTCTGTGAAGAAGTGTTTACCAATTATTTGATCTGAAAGGGGGGACCAAGCAGTTTTGTATACTGCTACAAATGGTTAGGGTTAGTGCTGAGCCTTGAAAAGTTTGGTGCCACTGTATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATATGTGTATGAGATGAAGCTAGCGTTTGGCCATAAGATTTCCACATATTTTGACATATTATTTGGGTCAAAATTTGGGTGAAATTTCAACATGTGTTTGACCATTGTTTTTGGGAAACATATTTAACTTTTTTAGGAGATATGATTTATACCCATATCAAAACTAACCATAGGTTTGTAGTACAAATAAATTGGATCTTTGTTCCAACAAATAACAAGTAGTGTCCAGGACATTAGAGCAATATGGTAGTTCAGAGTGAGTTAGTTCAACAAGTATCATTCCATACATTGTGAAGTAGACAGAGCACATGACATTATTACCCTTAGCCGATTGTTCATCATTTCATCAATAGTCATATCATTACTTTCATATTCACGGAATATTCTATCACTGCTTGGGTGTTTACGGAAAAATTATGTAAATATAGCGCAACAACTACTGTAGAGGGTGTTTTTGTAAACGATAAAGTTTGGTATAGAATTTAAATTTTTAAAAGATTCCAAATAATGAGATTTGACCCAATACTAGTTTTTTCTAGTATTTGGGAATTTGGGTTATTTGCCAAATAATGACAAATTGTATGGACAAACACTATTTGCCAAATTTGCCCCCAAATTTTACATGGGAAATCTATGGCCAAATGGGTCAGAAGAGTGCTCTCTGAGATGGGAACTAGAGCAGTAACTAAGCCTGGGGCATGGGTGTTGCTTTGGTACTTCCGTCAGTGAATGTTCTCTTTGTATGGGAGAATATGCTAAGCGGAAAAATAGAAATGTCCGAATGGGGCATGCAAACACACTAGAACAAGTATGCTGCTAGGAGGAACAAAAGAAGCATATGAATCAGAACTTTACCTTTGAATCAGGGCAGTTATTGTAGAAACACAATTATGTGATAGTTGTGGAGAACTAAAATTCATTGTTTGAAAAACAATGGGCTCAGGGCTGAACCAAAGGTTTGTGTTTATAAGTCTATTGACTGAAGTTAGAATTCCATTAGTGTATGACAGAGTTAACAAAATAAGCATAGGAATCAGAACTTTACCTTTGAATCACGGCAGTTAATGTAGAAACACAATTATGTGATAGTTGTGGAGAACAAAAATTTATTATTTGGAAACAATGAGCTGAACCAAAGGTATGTCTATTAACTGAAGTTAGAATTCCATGAGTGTATGACAGAGGAAAAGTTACCCTGTGAGTGTCGTGATCTATGTTCATACAATAACTGGTTAAGCAATCTTAATTTTTACCATCAGAGGTCCCTCTGAAGATTGTCATCGATGTCTTTACTCTTGTCGAGCGGAGTTGTTCAGAAGGAAGGCTTACATCTTATATAGGGAATTTGGCTCCCTTTCATACTTCAACTCTTTGGAACTTTGATATTTTCTTTCTGCTTTATCGGATTTTGAGGTTCTAATTACATTGAATTATTTGGGCCACCAGAAGCTAGTAGAGAGCTCATATAGTTCTGATGGCAGTCATAACAATTATTATCTTTGGATGTAAATGAGTTACCTTTGCTTCTTTGATGGGGTCTTCCTAATTAATGGGGATGATTATGTTCATGTTCAAAAGAATTTTCTGTGATTGTGCTTGTTTAATCATTAAACTTTAGCGTCAACCACTTGCTACTGCACTGCCCTGTTGCTTCAGACCTCTGGAATATGTTATGTTGTTTTTTTGGTCTATCCTGGGTCAGGGATGCCTTAGAAAGTTGGAGTTCACGGTAAGTTGACAACGCAATCAAGTGTATGTCGATGATGATCCCTGGTACTCTCTTTTGGTATTTATGGAAAGTGGAACAGAAGATGTTTTGATGGAATTTCCACTTCTAGAAATCTTTTGCGAGGCAGATGTCTAGTTAGCCTTTTTAGCTGTCCAAATTGACCCATGTAAATAATTTAGACCTATTCTTGGATTTTGTTAGCTCTATAGTTTAAAAAGAGGCTACAAATCCTTTTTTGTGAGCTTAACTGCTCTCTCCTTGTAATGCTAGCATCTTGTTGATGCCTTAAAAAGAATCTATCTTACTTCACAAAAAAGAAAGCATTAAACTTGCATCATTGAATAGATCTCTGTTGGCTGGTTGGATATACACCTTTATTCAATTTTTTAATCGTCGATCACGGTGTGAACTATATTAATTACTGCCCAACTGCTCGCGTGCTGATTGTACTTTATCCAGCTTGCTTATTACTTGATCTCACCAGTTGTTTGATTGAATGTACATCTTTAGGCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGT</genome_strand>
        <mrna_strand>CTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG..............................................................................................................................................................................................................................................................AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT.......................................................................................................................................GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cdUGba/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323170" ref_strand="+" ref_description="SGN-U323170        Tomato 200607 #1 [7 ESTs aligned]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198I15-Ox2M1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198I15.1" temp_strand="-" temp_description="C04HBa0198I15.1  CU313315.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0198I15 sequenced_by:sanger upload_account_name:uk">
        <position start="68219" stop="67477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67918" g_stop="67776" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198I15.1" gen_strand="-" ref_id="SGN-U323170" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67918" e_stop="67776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCCTTGTTGATTATAATTGTTTATAATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAAAAATATTCTGCGAGTAAGTATGCCCAGACTATGTCATCCTAAGGTTGAAACCGGTAGG-AAAGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="38183" PGL_stop="28710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38183" e_stop="37880"/>
            <exon e_start="37625" e_stop="37522"/>
            <exon e_start="37386" e_stop="37343"/>
            <exon e_start="30005" e_stop="28710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38183" e_stop="37880" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="37879" i_stop="37626" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37625" e_stop="37522" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37521" i_stop="37387" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37386" e_stop="37343" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37342" i_stop="30006" i_length="7337"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="30005" e_stop="28710" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38183" stop="37880"/>
              <exon start="37625" stop="37522"/>
              <exon start="37386" stop="37343"/>
              <exon start="30005" stop="28738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29256" stop="28710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTTCTAATCTTTCCTTAGATTAAATCGCCACAACCTCCTTGAGCACTTTGTTTTCTTCGCCGCAACTCATTTTTTTCTCTATTCACTGAGAATATATTTATAGTTGTAAGGGTCATTTGAATCATCATTCTGATCTGCATTTTCTCTTCGTTTGTTCGAATCAAGAAGCTAATTTTCTTTGTGGGGTTTACTAGATGGCTGCTATTATACAAGGAATTGGTGCTGCTACTGCACTAACATCAGCCAATTCTTTGGATACCAAGAAGTCACTTTTCGCTAATTCTCGCAGATCTTTGTCAG : AGAGGAAAGGAAGGTTATTTGTGGCTAGATCTGATGGGCGTTTAAGCAGTGGTTTGAATGGACGTGGAGGAAGAGCTGAACAATTAATCACTAATGCTGTTGCT : GCAAAAGAAGATGCTGCTGCAGCTTCTACTTCATTCAAGCCAGG : GCATGAACTGTTGCTCTTTGAGGCCCTCCGCGAAGGCCTGGAAGAAGAGATGGACAGAGATCCCACTGTTTGTGTAATGGGTGAAGATGTCGGTCATTACGGAGGTTCGTACAAGGTGACTAAAGGCCTTGCCCCAAAATATGGTGATCTCAGGGTTCTTGATACTCCTATTGCTGAGAACTCTTTCACTGGTATGGGCATTGGAGCTGCAATGACTGGCTTGCGTCCAGTTATTGAGGGAATGAACATGGGATTTCTTCTTCTGGCCTTCAACCAGATATCTAACAACTGCGGTATGCTCCACTACACATCTGGTGGCCAGTTTAAGATACCAGTTGTCATCCGAGGTCCTGGTGGAGTTGGTCGACAGCTTGGAGCAGAGCACTCTCAACGCCTTGAGTCATACTTCCAGTCAATTCCTGGAATCCAGATGGTCGCCTGTTCAACCCCCTACAATGCTAAGGGCTTGATGAAGGCAGCTATCAAAAGTGATAACCCTGTGATTCTGTTTGAGCATGTTTTGCTCTACAACCTCAAGGAAAGAATTCCAGATGAAGAGTATGTGCTGAATCTTGAAGAAGCAGAGATGGTACGACCTGGGGAGCATGTAACCATTCTAACTTATTCCAGGATGAGGTATCATGTAATGCAGGCTGCCAAGACACTTGTGAACAAGGGTTATGATCCCGAGGTCATTGATATTAGGTCTCTGAAACCATTTGATCTTTACACCATCGGGAAGTCAGTGAAAAAGACTCATCGTGTGCTCATTGTCGAGGAATGCATGCGCACAGGAGGTATTGGGGCCAGCTTGACAGCCGCTATAACTGAGAACTTTCACGACTATCTAGATGCCCCAATCGTATGTCTGTCGTCACAGGATGTGCCAACCCCTTATGCTGGGACGTTAGAGAATTGGACTGTTGTCCAACCTCCCCAGATTGTTACTGCAGTTGAACAACTTTGCCAGTGATCAAGTGGTAGAAGTTTTATGATAATCATGCCATTATGTTCAGTTGCTTATGTCATAATTTAAGGCTCAACTTCTGATCGATTTTTATTGTCTGATTTTGCTAGAGATTTTATTTTTTGGAACTTGGGAGTCCTAGTTAAGGTGAGATGTTTGTTGTTTTGCCTTCTACCCACACCAAAATGGTGCTTGGAATCGTTATGTACTGGTAAGGTAACTAGACTTCATAGAAACATTATCATTGTTTTGTTTCGTTAAAGATAAAGATTTAGGTCTATTTTATAATCAAAGCTGGAGTTGTCCTACATTGCTAAAAGTATTAAATT</gDNA_template>
            <first_frame> L  F  S  N  L  S  L  D  *  I  A  T  T  S  L  S  T  L  F  S  S  P  Q  L  I  F  F  S  I  H  *  E  Y  I  Y  S  C  K  G  H  L  N  H  H  S  D  L  H  F  L  F  V  C  S  N  Q  E  A  N  F  L  C  G  V  Y  *  M  A  A  I  I  Q  G  I  G  A  A  T  A  L  T  S  A  N  S  L  D  T  K  K  S  L  F  A  N  S  R  R  S  L  S   : E  R  K  G  R  L  F  V  A  R  S  D  G  R  L  S  S  G  L  N  G  R  G  G  R  A  E  Q  L  I  T  N  A  V  A  :  A  K  E  D  A  A  A  A  S  T  S  F  K  P  G :   H  E  L  L  L  F  E  A  L  R  E  G  L  E  E  E  M  D  R  D  P  T  V  C  V  M  G  E  D  V  G  H  Y  G  G  S  Y  K  V  T  K  G  L  A  P  K  Y  G  D  L  R  V  L  D  T  P  I  A  E  N  S  F  T  G  M  G  I  G  A  A  M  T  G  L  R  P  V  I  E  G  M  N  M  G  F  L  L  L  A  F  N  Q  I  S  N  N  C  G  M  L  H  Y  T  S  G  G  Q  F  K  I  P  V  V  I  R  G  P  G  G  V  G  R  Q  L  G  A  E  H  S  Q  R  L  E  S  Y  F  Q  S  I  P  G  I  Q  M  V  A  C  S  T  P  Y  N  A  K  G  L  M  K  A  A  I  K  S  D  N  P  V  I  L  F  E  H  V  L  L  Y  N  L  K  E  R  I  P  D  E  E  Y  V  L  N  L  E  E  A  E  M  V  R  P  G  E  H  V  T  I  L  T  Y  S  R  M  R  Y  H  V  M  Q  A  A  K  T  L  V  N  K  G  Y  D  P  E  V  I  D  I  R  S  L  K  P  F  D  L  Y  T  I  G  K  S  V  K  K  T  H  R  V  L  I  V  E  E  C  M  R  T  G  G  I  G  A  S  L  T  A  A  I  T  E  N  F  H  D  Y  L  D  A  P  I  V  C  L  S  S  Q  D  V  P  T  P  Y  A  G  T  L  E  N  W  T  V  V  Q  P  P  Q  I  V  T  A  V  E  Q  L  C  Q  *  S  S  G  R  S  F  M  I  I  M  P  L  C  S  V  A  Y  V  I  I  *  G  S  T  S  D  R  F  L  L  S  D  F  A  R  D  F  I  F  W  N  L  G  V  L  V  K  V  R  C  L  L  F  C  L  L  P  T  P  K  W  C  L  E  S  L  C  T  G  K  V  T  R  L  H  R  N  I  I  I  V  L  F  R  *  R  *  R  F  R  S  I  L  *  S  K  L  E  L  S  Y  I  A  K  S  I  K   </first_frame>
            <second_frame>  S  F  L  I  F  P  *  I  K  S  P  Q  P  P  *  A  L  C  F  L  R  R  N  S  F  F  S  L  F  T  E  N  I  F  I  V  V  R  V  I  *  I  I  I  L  I  C  I  F  S  S  F  V  R  I  K  K  L  I  F  F  V  G  F  T  R  W  L  L  L  Y  K  E  L  V  L  L  L  H  *  H  Q  P  I  L  W  I  P  R  S  H  F  S  L  I  L  A  D  L  C  Q  :  R  G  K  E  G  Y  L  W  L  D  L  M  G  V  *  A  V  V  *  M  D  V  E  E  E  L  N  N  *  S  L  M  L  L  L :   Q  K  K  M  L  L  Q  L  L  L  H  S  S  Q   : G  M  N  C  C  S  L  R  P  S  A  K  A  W  K  K  R  W  T  E  I  P  L  F  V  *  W  V  K  M  S  V  I  T  E  V  R  T  R  *  L  K  A  L  P  Q  N  M  V  I  S  G  F  L  I  L  L  L  L  R  T  L  S  L  V  W  A  L  E  L  Q  *  L  A  C  V  Q  L  L  R  E  *  T  W  D  F  F  F  W  P  S  T  R  Y  L  T  T  A  V  C  S  T  T  H  L  V  A  S  L  R  Y  Q  L  S  S  E  V  L  V  E  L  V  D  S  L  E  Q  S  T  L  N  A  L  S  H  T  S  S  Q  F  L  E  S  R  W  S  P  V  Q  P  P  T  M  L  R  A  *  *  R  Q  L  S  K  V  I  T  L  *  F  C  L  S  M  F  C  S  T  T  S  R  K  E  F  Q  M  K  S  M  C  *  I  L  K  K  Q  R  W  Y  D  L  G  S  M  *  P  F  *  L  I  P  G  *  G  I  M  *  C  R  L  P  R  H  L  *  T  R  V  M  I  P  R  S  L  I  L  G  L  *  N  H  L  I  F  T  P  S  G  S  Q  *  K  R  L  I  V  C  S  L  S  R  N  A  C  A  Q  E  V  L  G  P  A  *  Q  P  L  *  L  R  T  F  T  T  I  *  M  P  Q  S  Y  V  C  R  H  R  M  C  Q  P  L  M  L  G  R  *  R  I  G  L  L  S  N  L  P  R  L  L  L  Q  L  N  N  F  A  S  D  Q  V  V  E  V  L  *  *  S  C  H  Y  V  Q  L  L  M  S  *  F  K  A  Q  L  L  I  D  F  Y  C  L  I  L  L  E  I  L  F  F  G  T  W  E  S  *  L  R  *  D  V  C  C  F  A  F  Y  P  H  Q  N  G  A  W  N  R  Y  V  L  V  R  *  L  D  F  I  E  T  L  S  L  F  C  F  V  K  D  K  D  L  G  L  F  Y  N  Q  S  W  S  C  P  T  L  L  K  V  L  N  </second_frame>
            <third_frame>   L  F  *  S  F  L  R  L  N  R  H  N  L  L  E  H  F  V  F  F  A  A  T  H  F  F  L  Y  S  L  R  I  Y  L  *  L  *  G  S  F  E  S  S  F  *  S  A  F  S  L  R  L  F  E  S  R  S  *  F  S  L  W  G  L  L  D  G  C  Y  Y  T  R  N  W  C  C  Y  C  T  N  I  S  Q  F  F  G  Y  Q  E  V  T  F  R  *  F  S  Q  I  F  V  R :   E  E  R  K  V  I  C  G  *  I  *  W  A  F  K  Q  W  F  E  W  T  W  R  K  S  *  T  I  N  H  *  C  C  C   : C  K  R  R  C  C  C  S  F  Y  F  I  Q  A  R  :  A  *  T  V  A  L  *  G  P  P  R  R  P  G  R  R  D  G  Q  R  S  H  C  L  C  N  G  *  R  C  R  S  L  R  R  F  V  Q  G  D  *  R  P  C  P  K  I  W  *  S  Q  G  S  *  Y  S  Y  C  *  E  L  F  H  W  Y  G  H  W  S  C  N  D  W  L  A  S  S  Y  *  G  N  E  H  G  I  S  S  S  G  L  Q  P  D  I  *  Q  L  R  Y  A  P  L  H  I  W  W  P  V  *  D  T  S  C  H  P  R  S  W  W  S  W  S  T  A  W  S  R  A  L  S  T  P  *  V  I  L  P  V  N  S  W  N  P  D  G  R  L  F  N  P  L  Q  C  *  G  L  D  E  G  S  Y  Q  K  *  *  P  C  D  S  V  *  A  C  F  A  L  Q  P  Q  G  K  N  S  R  *  R  V  C  A  E  S  *  R  S  R  D  G  T  T  W  G  A  C  N  H  S  N  L  F  Q  D  E  V  S  C  N  A  G  C  Q  D  T  C  E  Q  G  L  *  S  R  G  H  *  Y  *  V  S  E  T  I  *  S  L  H  H  R  E  V  S  E  K  D  S  S  C  A  H  C  R  G  M  H  A  H  R  R  Y  W  G  Q  L  D  S  R  Y  N  *  E  L  S  R  L  S  R  C  P  N  R  M  S  V  V  T  G  C  A  N  P  L  C  W  D  V  R  E  L  D  C  C  P  T  S  P  D  C  Y  C  S  *  T  T  L  P  V  I  K  W  *  K  F  Y  D  N  H  A  I  M  F  S  C  L  C  H  N  L  R  L  N  F  *  S  I  F  I  V  *  F  C  *  R  F  Y  F  L  E  L  G  S  P  S  *  G  E  M  F  V  V  L  P  S  T  H  T  K  M  V  L  G  I  V  M  Y  W  *  G  N  *  T  S  *  K  H  Y  H  C  F  V  S  L  K  I  K  I  *  V  Y  F  I  I  K  A  G  V  V  L  H  C  *  K  Y  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198I15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37985" stop="37880"/>
                    <exon start="37625" stop="37522"/>
                    <exon start="37386" stop="37343"/>
                    <exon start="30005" stop="29033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAAIIQGIGAATALTSANSLDTKKSLFANSRRSLSERKGRLFVARSDGRLSSGLNGRGGRAEQLITNAVAAKEDAAAASTSFKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYGGSYKVTKGLAPKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIKSDNPVILFEHVLLYNLKERIPDEEYVLNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGKSVKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLENWTVVQPPQIVTAVEQLCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="67918" PGL_stop="67776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67918" e_stop="67776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="67918" e_stop="67776" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67918" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCCCTTGTTGATTATAATTGTTTATAATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAAAAATATTCTGCGAGTAAGTATGCCCAGACTATGTCATCCTAAGGTTGAAACCGGTAGGAAAGAAGA</gDNA_template>
            <first_frame> I  I  P  C  *  L  *  L  F  I  M  F  *  *  C  Y  N  N  H  L  *  K  V  C  Y  K  N  I  L  R  V  S  M  P  R  L  C  H  P  K  V  E  T  G  R  K  E   </first_frame>
            <second_frame>  *  S  L  V  D  Y  N  C  L  *  C  F  N  N  V  I  I  T  I  F  R  K  F  A  T  K  I  F  C  E  *  V  C  P  D  Y  V  I  L  R  L  K  P  V  G  K  K  </second_frame>
            <third_frame>   N  P  L  L  I  I  I  V  Y  N  V  L  I  M  L  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  S  K  Y  A  Q  T  M  S  S  *  G  *  N  R  *  E  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198I15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 6360 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 6800 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3400 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 21:34:23
-->
