<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 17:50:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319769" ref_strand="+" ref_description="SGN-U319769        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | ammonium transporter 1, member 2 (AMT1.2), nearly identical to SP:Q9ZPJ8 Ammonium transporter 1, member 2 (AtAMT1;2) {Arabidopsis thaliana} | chr1:24064433-24066293 REVERSE | Aliases: None(evalue: 0, score=696) genbank/nr: gi|2065194|emb|CAA64475.1| ammonium transporter [Lycopersicon esculentum] >gi|3023281|sp|O04161|AMT12_LYCES Ammonium transporter 1, member 2 (LeAMT1;2) (evalue: 0, score=903)">
      <seq>cttcttcttccttcatcactctctctctattaattactaattctccaaatcatggcctccgccatgacttgctcagctgccgagctcttccctcatctcggcagctcagcaaatgccacagcggccgcagaattcatctgcagccgcttctcagctgtctcagagtacctcacaaacaccacctacgcggtggacaccacatacctcctcttctcggcttacctcgtcttcgccatgcaattgggatttgccatgttgtgcgcgggctctgtccgcgccaaaaacacgatgaatataatgcttacaaacgtgcttgatgctgctgctggtggattgtcttattatctctttggttttgcctttgcctttggagctccttctaatggtttcattggaaaacatttttttggattaaaagagtttccttcacaagcttttgactatagctattttctttatcaatgggcctttgccatagctgctgcaggtatcacaagtgggtccatagctgaaagaacacaatttgtggcttatctcatttactcttcatttttgaccggttttgtgtacccaattgtctcacattggttctggtccggtgatggttgggccagtgcatcaaaaaccgatggtaacttattattcggttcgggtgttatcgattttgccgggtccggtgttgttcatatggttggtggcattgccggtctatggggcgctttcatcgaaggaccacgaatcggtcggtttgatcggtccggtcggtctgttgccctaagaggccatagtgcctcattagttgtattaggtacttttttactatggttcggttggtacggatttaatcctggttcattcttaactattcttaaatcatacgatcataccataagaggtacttattatggtcagtggagcgcgatcggtaggacagctgtcacgactacattggctggttgtaccgccgctctgacaactttgttttgtaagaggcttttagtgggacattggaatgtagttgatgtatgtaacggtttactaggtggatttgcagcaatcacgtcaggttgtgcagttgttgagccatgggcagctatagtttgtggatttatcgcagcttgggttttaattggatttaacgcattggcagctaaattaaaatacgacgatccattagaagcagcacaacttcatggtggttgcggttcatgggggataatatttactggattattcgcgaaaaaagaatatgtcaacgaagtatatccaggatttcctaatagaccatatggattgtttatgggaggtggtggaaaactattaggtgcacaagtaattcaagttgttgtgattattggatgggtgagtgtcacaatgggaccattgttttatttgttacataagtttaagctattgaggatatcgcgagacgatgaaacagcagggatggatttaacaagacatggaggatttgcatatatatatcatgatgaagatgaaggttcatctatgcctggatttaaaatgacaagagttgaaccgactaatacttctacacctgatcatcaaaatagatctgttaatgtggttgtataacaaataaataaataaataaaaatgttactatatagaatggtcaccttataattaaggaaacgtcaaatctcaaagtgctttaataatgtgatattattggtttcttgatagactatatatatatatatgccaaatatttttgaccaaaaaaaaaaggattgtacttattttagctttatgactttattgtatgtgtcttcttgtttgtttgtttatttatttgaagcagttatctgtattgttctaaagatgtaaataaatagattattaattactctggtcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="69791" stop="66208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69491" g_stop="69005" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67897" g_stop="66514" g_length="1384"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="1871" r_length="1384" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1879" polyA_stop="1899"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-U319769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1871</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69491" e_stop="69005"/>
          <exon e_start="67897" e_stop="66514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAGGTATATATTAATTTCAATTTTCATGTTAGCTTGCCTTGGGAAAGAAAAAAAAATTATTTCTCGATTCATTTTAATTGTCCTGCCATACTTTTGGAAAGTCTGTTTGACTAATTTCTAAAATTAAATTTGATTACGTTAGTTAAATATTTTAAATAAAAATTTAAATATTTAAAATCTATACGAAAAATACTATAAATTATAATTTTTTTATATTAATATGATGAAAAAATTATATCATAAGATGCTAATTAAATTTTTATGATTTGACCAAAAAAAGAAATTTATGACAATTAAAAGTAGAGGAGTAATTTAATTTTAGTAGATGCCAATTAACTGAACTCTCTATGCCTAGTAACTGCTAATAGATGTTAAATTTAATTTGGACAAATTACTCTCACTTTTACTTAATTAGATTATAATTAGACTTCATATCCAACAAACAAACAATGAAATATAATTAGACTTAGCATATCCAACAAACATACAATGAAATATATTAGACTTAGCATATCTAATAAACAAACAATGATTGTGTGACTATTTCATGGCATTATTTCTATTAATTGATGTTTAGTATTTCTTTCATTTTTTTAGTTGTATTTTTCGATTGTCAATTAAATTGATTTTTAAAGTTAAATTAAATTATATTAGTTTGATATTTTAAATTAAAAGAATCAAATATACAAAAATTATACAAAAAATAGTACAAGTTACAATTCTTTTATATTAATAAAATAAAAAGTATATTGTAACAACATACTGAATCCTACTTATTTAACGAAAACTTCAGAAAAATGTGTTATTTTATGATCTTAAATTCAATACGTAATCAAATCACATCACATAAATTGGGATATATGATATTATTTGAGAAAATGAAATCTGTTACCATTTTAAAATGTGAATAGAAGAAAATGATTATTTCAAATCTATCTACGGTAAAAATGAAAATCTATATAAAAAATCATAAGTATGAAAAAAAACACATTTCTCTTAGTATTCTTTTTTGGTTAACAATGTATTTATTGATTCTTCTCATCCACTTGTTCCTTATATGACCTAAGCCAAAAAAATTTATTTATTATTTATTTATTTTGAAATTTATAGGTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTATGACTTTATTGTATGGTGTCTTCTTGTTTGTTTGTTTATTTATTTGAAG-AGTTATCTGTATTGTTCTAAAGATGTAAATAAATAGATTATTAATTAC</genome_strand>
        <mrna_strand>CTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTATGACTTTATTGTAT-GTGTCTTCTTGTTTGTTTGTTTATTTATTTGAAGCAGTTATCTGTATTGTTCTAAAGATGTAAATAAATAGATTATTAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321456" ref_strand="+" ref_description="SGN-U321456        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:14822459-14825454 REVERSE | Aliases: MNJ8.18, MNJ8_18(evalue: 3e-64, score=243) genbank/nr: gi|15240205|ref|NP_198552.1| expressed protein [Arabidopsis thaliana] gi|16604482|gb|AAL24247.1| AT5g37360/MNJ8_150 [Arabidopsis thaliana] gi|21655281|gb|AAM65352.1| AT5g37360/MNJ8_150 [Arabidopsis thaliana](evalue: 2e-62, score=243)">
      <seq>aatatggctctcgcccaactccagttgtcaaaaaataatactagtaattctcttctcttgtgcttcaatggcttcctctatctcacttcatcaacactcgtctatctattgtctcttttctactcctactcttcgttttggcaaacacccacatcatatcatctccatccttccatcatttcgcaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctcttgaaccaaaccctcaaacacttgtacaggaaatcgctgagagttttgttctacctgcagactttttttcgcagcttcccagtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagttgagtgtggtgaagaggttggagagacattgttaaatataagtcgagcatgggaaatggctgatacatcaacgtccacagctttagtggacaagctgcctttattggttggctcattgacaggctctcaaaaatcagttagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtgcagaagtatctggggttgatgttgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaggcctacactggagctgccattgcattcatctttagttttctttcttgggaattgggccaaggcatacagagcataccggagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccgttttagctgcttttgcaatggtgggacttattttacttgggggacaacttaagtcggaaaataagtgagaagacattcctgttactgatagactaaaatgtggatcaacagactgttactggaattccaatggtatcagtagactcggttggattaactaagcatcttactttaaaatggtggcctcctcgaatttgagtataatagaggttctttgctcgtagtttcaatgttgcatccttgcttctggctaactgactgcaaagcttgttgaaaatattattttggcttcttggttcttttgtaaatttttgtttttaggccatgtcttcttccagtcaatgtatcaatattccttgtgatcttctcgtgatgtgtttcctcaagagggatgcttcttgaggaatttggttgttttgtgttgtctctctgttagcatagaaacacttgtctcatattgataatgtcaagtgtcttatcttaaaaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120265" stop="109474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119965" g_stop="119671" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="355" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="403" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="536" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117902" i_stop="117810" i_length="93">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117809" g_stop="117729" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="617" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117728" i_stop="112241" i_length="5488">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112240" g_stop="112191" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="667" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="738" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="829" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111796" g_stop="111683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="943" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="110194" g_stop="109767" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1371" r_length="428" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-U321456" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119965" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117809" e_stop="117729"/>
          <exon e_start="112240" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111683"/>
          <exon e_start="110194" e_stop="109767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACTAGGAGGTCTTCTGTGACTAAATAATGACTCTGCTGAAGCAGTTGAAATAATTCTACTTCTGATGGAATTATTCTGCTGTTAGACAACTATAAATCACTTACTTTTCTAGATTTTCTTTTGTTTCCTCTCAAAGTTACGATTCCACAGATGCTCATGATATCTTCAATGACAATATTGTGAACTTAGCCATTTTTTAAGCTTCGATTTTTTCTGTGTAGTCTGTAGTAGAACATTTGCACAGATTCAGGCTAAAAGTGTACTAATCTTTCTGGGAAACATATTAATACCTTAATATGAGCCTCAGGCATGGCGCCCAACATAAACTATGGTTTCAAAAGGTTCCTTAATCACTTAGGGACACTGAAACACTACTTCTGTGAGGGATGGGTAGTTTTATCTGGTACAACTAGCCTATAAACTTCCTTAAATGACAACATAAATGACCAAGTACAGGACAAAAAAGATTTTATTTAATAATGTCAACATTAAGTTTATAGAGATCATATCCTGTTGCCTCAAATACAGAATGTACAAGACAGAATAAAAAACTCTAAAACTTCTTTCTTAAACTTATTGTGCCTATAAAGTATAAAGCAGCGCAGTTAGACCTTTAACTTTGGGGTCCCAATTCATCAATCCTAACTTATATTAGTTATATAATTTGCACCTATGGATTTAAAACATTTTGAACTTCAAACTATTCTGTGTGTCTATCCTTGATAATTTCCATAAATCCTATTATGTTATGTATTTCAGGTTCTAAATTTTTGTCTAGCCTTAGTTGTAAAGTAGAAATTCAAGAAGATTGTCTCTGTATAGGCTACATTATCAGGCTAAAGAATGCAAAACTTTTAGGTGAACCATCTTCACGATACTTTCATGCACCTACACAAGGCTTGAATTTTTTTTGAATGGTCTACATCTATGAAAGAGATGTCTTACTATTGTCTCATGGCATATTGATTTTTCAATTTGTCTGTCTATCAAAAGAATTAACGTCCAGTGTCAATTTAATGAACTTGTCTGATTGGTTAAGTTTTACTTTAGTCCATCTTGTGAGCTGTTTGTCCCGGTGCACTTTTGTTTTTAAAAGGAGAAAAATTGAATACAAGTTCACAAAACCCGAGGATTGGCCTCTTGGGTTGTTCTTCCTTTTTACCACTCAGAGTGATTCTTGTACTCAATGTGGAAGTGTTTCACATATCAATATGTATTTCACTTGCACTTCTCCAGTTACGAATGTGGTTTCAGATTTGGTTGTCATTTCTTTAATCTATAGGTCTTTCATCTCTTTTGCTAGTTATATATATCGTGTTCATTTCTGTGCTTTCCTTATAAACTCATCATTTTTTTTCCCTAGGACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</genome_strand>
        <mrna_strand>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG.............................................................................................TTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTAAAAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321097" ref_strand="+" ref_description="SGN-U321097        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | exoribonuclease-related, similar to SP:P53859 3'-5' exoribonuclease CSL4 (EC 3.1.13.-) {Saccharomyces cerevisiae} | chr5:15586722-15588325 FORWARD | Aliases: K15E6.10(evalue: 1e-74, score=276) genbank/nr: exoribonuclease-like(evalue: 2e-73, score=279)">
      <seq>aactaaatagtattgggtacaaaatagaatactgcaaaaggcccgaacagagttttgttttcgagaggacttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtttacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcagagatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtagaggactttctactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgagcacttccattggaccattttttaatccggtacatatttttggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128188" stop="121110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127888" g_stop="127614" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="350" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="439" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="524" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="606" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121405" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="1001" r_length="395" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-U321097" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1001</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127888" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAATAGTATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAGATGTTA</genome_strand>
        <mrna_strand>AACTAAATAGTATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCCGGTACATATTTTTGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336382" ref_strand="+" ref_description="SGN-U336382        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-75, score=284)">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="138112" stop="139253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138412" g_stop="138953" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-U336382" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138412" e_stop="138953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTCTCCAAAACTTAGAAGTAAATTGTGTACCTCTATCTGATATGATGGAAAGTGGAACTCCATGCAACCGAACGACTTCTGAGATATAGAGCCTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAATTTGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATATTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTTATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328094" ref_strand="+" ref_description="SGN-U328094        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-65, score=251)">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="138557" stop="139741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138857" g_stop="139441" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-U328094" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138857" e_stop="139441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTTAGACTCTCCTCGCAACACC-TATCTCGAATCCAGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGTGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATATTGTAAACTACGATGATCCGTATAGACTTCACACTTAA-CCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATTGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="141259" stop="140000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140959" g_stop="140300" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140959" e_stop="140300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTGATTTACATTGTGATTTGCTTAACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGATTGACTTCGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAATTTTGTAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGGTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGAGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGATTTCTGTATTGATCTGGATCCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGAAAAGACTTTATTAGACCAAGTGCGTCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="140360" stop="141289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140660" g_stop="140989" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140660" e_stop="140989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATTTGGAGAAAGCCAAGTCATACCCAAAATTACATCGAAGTCAATCATTTCTAGGATAACCAAGTCTACATGAGTATTGCT-CCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTTAAGCAAATCACAATGTAAATCAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346572" ref_strand="+" ref_description="SGN-U346572        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-31, score=89.7)">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="142524" stop="141269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142224" g_stop="141569" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-U346572" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142224" e_stop="141569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACATCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAACTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACATGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAGTTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGATGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGGCATAGTGTAACGATTTGGCGTTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAGCACAGTCACCACCTATGACTTAGGCATCATTCTCTAGCTTATTTATGGAGAAGTATTTACCCCGGACTTTGAGGGATCGAAGGGGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCCTATGAGACTAAGTTTCGTGCATTATCCAAGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCATATTCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAG-CACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="157816" stop="158701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158116" g_stop="158401" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158116" e_stop="158401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTATTTTTCTTTGAGAGGCTATAAGACTTTAGCAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAGCGTCCGAGCCAGCCACTAGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="+" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="158181" stop="159328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158475" g_stop="159028" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158475" e_stop="159028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGTCCCATCTAGTACTAGGGCGGTGACTCCTCCACCGACTAAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTCCTTACTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGCCTCATTGGAAATAGGTACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTTTGGTTAACTATCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="160219" stop="159061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159919" g_stop="159361" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159919" e_stop="159361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTATGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCTCACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTTTCTGGATTCAAGCATAGTTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-AVFvJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="160426" stop="159496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160126" g_stop="159796" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160126" e_stop="159796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTACCAGGCTTGGCTAACGTCACGGTTTTAGCATTGCAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCCACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTATGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="69491" PGL_stop="66514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69491" e_stop="69005"/>
            <exon e_start="67897" e_stop="66514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69491" e_stop="69005" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69004" i_stop="67898" i_length="1107"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="67897" e_stop="66514" e_length="1384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69491" stop="69005"/>
              <exon start="67897" stop="66514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCTTCCTTCATCACTCTCTCTCTATTAATTACTAATTCTCCAAATCATGGCCTCCGCCATGACTTGCTCAGCTGCCGAGCTCTTCCCTCATCTCGGCAGCTCAGCAAATGCCACAGCGGCCGCAGAATTCATCTGCAGCCGCTTCTCAGCTGTCTCAGAGTACCTCACAAACACCACCTACGCGGTGGACACCACATACCTCCTCTTCTCGGCTTACCTCGTCTTCGCCATGCAATTGGGATTTGCCATGTTGTGCGCGGGCTCTGTCCGCGCCAAAAACACGATGAATATAATGCTTACAAACGTGCTTGATGCTGCTGCTGGTGGATTGTCTTATTATCTCTTTGGTTTTGCCTTTGCCTTTGGAGCTCCTTCTAATGGTTTCATTGGAAAACATTTTTTTGGATTAAAAGAGTTTCCTTCACAAGCTTTTGACTATAGCTATTTTCTTTATCAATGGGCCTTTGCCATAGCTGCTGCAG : GTATCACAAGTGGGTCCATAGCTGAAAGAACACAATTTGTGGCTTATCTCATTTACTCTTCATTTTTGACCGGTTTTGTGTACCCAATTGTCTCACATTGGTTCTGGTCCGGTGATGGTTGGGCCAGTGCATCAAAAACCGATGGTAACTTATTATTCGGTTCGGGTGTTATCGATTTTGCCGGGTCCGGTGTTGTTCATATGGTTGGTGGCATTGCCGGTCTATGGGGCGCTTTCATCGAAGGACCACGAATCGGTCGGTTTGATCGGTCCGGTCGGTCTGTTGCCCTAAGAGGCCATAGTGCCTCATTAGTTGTATTAGGTACTTTTTTACTATGGTTCGGTTGGTACGGATTTAATCCTGGTTCATTCTTAACTATTCTTAAATCATACGATCATACCATAAGAGGTACTTATTATGGTCAGTGGAGCGCGATCGGTAGGACAGCTGTCACGACTACATTGGCTGGTTGTACCGCCGCTCTGACAACTTTGTTTTGTAAGAGGCTTTTAGTGGGACATTGGAATGTAGTTGATGTATGTAACGGTTTACTAGGTGGATTTGCAGCAATCACGTCAGGTTGTGCAGTTGTTGAGCCATGGGCAGCTATAGTTTGTGGATTTATCGCAGCTTGGGTTTTAATTGGATTTAACGCATTGGCAGCTAAATTAAAATACGACGATCCATTAGAAGCAGCACAACTTCATGGTGGTTGCGGTTCATGGGGGATAATATTTACTGGATTATTCGCGAAAAAAGAATATGTCAACGAAGTATATCCAGGATTTCCTAATAGACCATATGGATTGTTTATGGGAGGTGGTGGAAAACTATTAGGTGCACAAGTAATTCAAGTTGTTGTGATTATTGGATGGGTGAGTGTCACAATGGGACCATTGTTTTATTTGTTACATAAGTTTAAGCTATTGAGGATATCGCGAGACGATGAAACAGCAGGGATGGATTTAACAAGACATGGAGGATTTGCATATATATATCATGATGAAGATGAAGGTTCATCTATGCCTGGATTTAAAATGACAAGAGTTGAACCGACTAATACTTCTACACCTGATCATCAAAATAGATCTGTTAATGTGGTTGTATAACAAATAAATAAATAAATAAAAATGTTACTATATAGAATGGTCACCTTATAATTAAGGAAACGTCAAATCTCAAAGTGCTTTAATAATGTGATATTATTGGTTTCTTGATAGACTATATATATATATATGCCAAATATTTTTGACCAAAAAAAAAAGGATTGTACTTATTTTAGCTTTATGACTTTATTGTATGGTGTCTTCTTGTTTGTTTGTTTATTTATTTGAAGAGTTATCTGTATTGTTCTAAAGATGTAAATAAATAGATTATTAATTAC</gDNA_template>
            <first_frame> L  L  L  P  S  S  L  S  L  Y  *  L  L  I  L  Q  I  M  A  S  A  M  T  C  S  A  A  E  L  F  P  H  L  G  S  S  A  N  A  T  A  A  A  E  F  I  C  S  R  F  S  A  V  S  E  Y  L  T  N  T  T  Y  A  V  D  T  T  Y  L  L  F  S  A  Y  L  V  F  A  M  Q  L  G  F  A  M  L  C  A  G  S  V  R  A  K  N  T  M  N  I  M  L  T  N  V  L  D  A  A  A  G  G  L  S  Y  Y  L  F  G  F  A  F  A  F  G  A  P  S  N  G  F  I  G  K  H  F  F  G  L  K  E  F  P  S  Q  A  F  D  Y  S  Y  F  L  Y  Q  W  A  F  A  I  A  A  A   : G  I  T  S  G  S  I  A  E  R  T  Q  F  V  A  Y  L  I  Y  S  S  F  L  T  G  F  V  Y  P  I  V  S  H  W  F  W  S  G  D  G  W  A  S  A  S  K  T  D  G  N  L  L  F  G  S  G  V  I  D  F  A  G  S  G  V  V  H  M  V  G  G  I  A  G  L  W  G  A  F  I  E  G  P  R  I  G  R  F  D  R  S  G  R  S  V  A  L  R  G  H  S  A  S  L  V  V  L  G  T  F  L  L  W  F  G  W  Y  G  F  N  P  G  S  F  L  T  I  L  K  S  Y  D  H  T  I  R  G  T  Y  Y  G  Q  W  S  A  I  G  R  T  A  V  T  T  T  L  A  G  C  T  A  A  L  T  T  L  F  C  K  R  L  L  V  G  H  W  N  V  V  D  V  C  N  G  L  L  G  G  F  A  A  I  T  S  G  C  A  V  V  E  P  W  A  A  I  V  C  G  F  I  A  A  W  V  L  I  G  F  N  A  L  A  A  K  L  K  Y  D  D  P  L  E  A  A  Q  L  H  G  G  C  G  S  W  G  I  I  F  T  G  L  F  A  K  K  E  Y  V  N  E  V  Y  P  G  F  P  N  R  P  Y  G  L  F  M  G  G  G  G  K  L  L  G  A  Q  V  I  Q  V  V  V  I  I  G  W  V  S  V  T  M  G  P  L  F  Y  L  L  H  K  F  K  L  L  R  I  S  R  D  D  E  T  A  G  M  D  L  T  R  H  G  G  F  A  Y  I  Y  H  D  E  D  E  G  S  S  M  P  G  F  K  M  T  R  V  E  P  T  N  T  S  T  P  D  H  Q  N  R  S  V  N  V  V  V  *  Q  I  N  K  *  I  K  M  L  L  Y  R  M  V  T  L  *  L  R  K  R  Q  I  S  K  C  F  N  N  V  I  L  L  V  S  *  *  T  I  Y  I  Y  M  P  N  I  F  D  Q  K  K  K  D  C  T  Y  F  S  F  M  T  L  L  Y  G  V  F  L  F  V  C  L  F  I  *  R  V  I  C  I  V  L  K  M  *  I  N  R  L  L  I   </first_frame>
            <second_frame>  F  F  F  L  H  H  S  L  S  I  N  Y  *  F  S  K  S  W  P  P  P  *  L  A  Q  L  P  S  S  S  L  I  S  A  A  Q  Q  M  P  Q  R  P  Q  N  S  S  A  A  A  S  Q  L  S  Q  S  T  S  Q  T  P  P  T  R  W  T  P  H  T  S  S  S  R  L  T  S  S  S  P  C  N  W  D  L  P  C  C  A  R  A  L  S  A  P  K  T  R  *  I  *  C  L  Q  T  C  L  M  L  L  L  V  D  C  L  I  I  S  L  V  L  P  L  P  L  E  L  L  L  M  V  S  L  E  N  I  F  L  D  *  K  S  F  L  H  K  L  L  T  I  A  I  F  F  I  N  G  P  L  P  *  L  L  Q  :  V  S  Q  V  G  P  *  L  K  E  H  N  L  W  L  I  S  F  T  L  H  F  *  P  V  L  C  T  Q  L  S  H  I  G  S  G  P  V  M  V  G  P  V  H  Q  K  P  M  V  T  Y  Y  S  V  R  V  L  S  I  L  P  G  P  V  L  F  I  W  L  V  A  L  P  V  Y  G  A  L  S  S  K  D  H  E  S  V  G  L  I  G  P  V  G  L  L  P  *  E  A  I  V  P  H  *  L  Y  *  V  L  F  Y  Y  G  S  V  G  T  D  L  I  L  V  H  S  *  L  F  L  N  H  T  I  I  P  *  E  V  L  I  M  V  S  G  A  R  S  V  G  Q  L  S  R  L  H  W  L  V  V  P  P  L  *  Q  L  C  F  V  R  G  F  *  W  D  I  G  M  *  L  M  Y  V  T  V  Y  *  V  D  L  Q  Q  S  R  Q  V  V  Q  L  L  S  H  G  Q  L  *  F  V  D  L  S  Q  L  G  F  *  L  D  L  T  H  W  Q  L  N  *  N  T  T  I  H  *  K  Q  H  N  F  M  V  V  A  V  H  G  G  *  Y  L  L  D  Y  S  R  K  K  N  M  S  T  K  Y  I  Q  D  F  L  I  D  H  M  D  C  L  W  E  V  V  E  N  Y  *  V  H  K  *  F  K  L  L  *  L  L  D  G  *  V  S  Q  W  D  H  C  F  I  C  Y  I  S  L  S  Y  *  G  Y  R  E  T  M  K  Q  Q  G  W  I  *  Q  D  M  E  D  L  H  I  Y  I  M  M  K  M  K  V  H  L  C  L  D  L  K  *  Q  E  L  N  R  L  I  L  L  H  L  I  I  K  I  D  L  L  M  W  L  Y  N  K  *  I  N  K  *  K  C  Y  Y  I  E  W  S  P  Y  N  *  G  N  V  K  S  Q  S  A  L  I  M  *  Y  Y  W  F  L  D  R  L  Y  I  Y  I  C  Q  I  F  L  T  K  K  K  R  I  V  L  I  L  A  L  *  L  Y  C  M  V  S  S  C  L  F  V  Y  L  F  E  E  L  S  V  L  F  *  R  C  K  *  I  D  Y  *  L  </second_frame>
            <third_frame>   S  S  S  F  I  T  L  S  L  L  I  T  N  S  P  N  H  G  L  R  H  D  L  L  S  C  R  A  L  P  S  S  R  Q  L  S  K  C  H  S  G  R  R  I  H  L  Q  P  L  L  S  C  L  R  V  P  H  K  H  H  L  R  G  G  H  H  I  P  P  L  L  G  L  P  R  L  R  H  A  I  G  I  C  H  V  V  R  G  L  C  P  R  Q  K  H  D  E  Y  N  A  Y  K  R  A  *  C  C  C  W  W  I  V  L  L  S  L  W  F  C  L  C  L  W  S  S  F  *  W  F  H  W  K  T  F  F  W  I  K  R  V  S  F  T  S  F  *  L  *  L  F  S  L  S  M  G  L  C  H  S  C  C  R :   Y  H  K  W  V  H  S  *  K  N  T  I  C  G  L  S  H  L  L  F  I  F  D  R  F  C  V  P  N  C  L  T  L  V  L  V  R  *  W  L  G  Q  C  I  K  N  R  W  *  L  I  I  R  F  G  C  Y  R  F  C  R  V  R  C  C  S  Y  G  W  W  H  C  R  S  M  G  R  F  H  R  R  T  T  N  R  S  V  *  S  V  R  S  V  C  C  P  K  R  P  *  C  L  I  S  C  I  R  Y  F  F  T  M  V  R  L  V  R  I  *  S  W  F  I  L  N  Y  S  *  I  I  R  S  Y  H  K  R  Y  L  L  W  S  V  E  R  D  R  *  D  S  C  H  D  Y  I  G  W  L  Y  R  R  S  D  N  F  V  L  *  E  A  F  S  G  T  L  E  C  S  *  C  M  *  R  F  T  R  W  I  C  S  N  H  V  R  L  C  S  C  *  A  M  G  S  Y  S  L  W  I  Y  R  S  L  G  F  N  W  I  *  R  I  G  S  *  I  K  I  R  R  S  I  R  S  S  T  T  S  W  W  L  R  F  M  G  D  N  I  Y  W  I  I  R  E  K  R  I  C  Q  R  S  I  S  R  I  S  *  *  T  I  W  I  V  Y  G  R  W  W  K  T  I  R  C  T  S  N  S  S  C  C  D  Y  W  M  G  E  C  H  N  G  T  I  V  L  F  V  T  *  V  *  A  I  E  D  I  A  R  R  *  N  S  R  D  G  F  N  K  T  W  R  I  C  I  Y  I  S  *  *  R  *  R  F  I  Y  A  W  I  *  N  D  K  S  *  T  D  *  Y  F  Y  T  *  S  S  K  *  I  C  *  C  G  C  I  T  N  K  *  I  N  K  N  V  T  I  *  N  G  H  L  I  I  K  E  T  S  N  L  K  V  L  *  *  C  D  I  I  G  F  L  I  D  Y  I  Y  I  Y  A  K  Y  F  *  P  K  K  K  G  L  Y  L  F  *  L  Y  D  F  I  V  W  C  L  L  V  C  L  F  I  Y  L  K  S  Y  L  Y  C  S  K  D  V  N  K  *  I  I  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69458" stop="69005"/>
                    <exon start="67897" stop="66789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1560</number_coding_nucleotides>
                  <number_encoded_amino_acids>520</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLILQIMASAMTCSAAELFPHLGSSANATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGKHFFGLKEFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSGDGWASASKTDGNLLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFLTILKSYDHTIRGTYYGQWSAIGRTAVTTTLAGCTAALTTLFCKRLLVGHWNVVDVCNGLLGGFAAITSGCAVVEPWAAIVCGFIAAWVLIGFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYVNEVYPGFPNRPYGLFMGGGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIYHDEDEGSSMPGFKMTRVEPTNTSTPDHQNRSVNVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="119965" PGL_stop="109767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119965" e_stop="119671"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="118035" e_stop="117903"/>
            <exon e_start="117809" e_stop="117729"/>
            <exon e_start="112240" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111683"/>
            <exon e_start="110194" e_stop="109767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.465" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119965" e_stop="119671" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118035" e_stop="117903" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.465" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117902" i_stop="117810" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117809" e_stop="117729" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117728" i_stop="112241" i_length="5488"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112240" e_stop="112191" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111796" e_stop="111683" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.845">
            <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488"/>
          </intron>
          <exon e_serial="10" e_score="0.979">
            <gDNA_exon_boundary e_start="110194" e_stop="109767" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119965" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117809" stop="117729"/>
              <exon start="112240" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG : TTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG : TATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA : GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</gDNA_template>
            <first_frame> N  M  A  L  A  Q  L  Q  L  S  K  N  N  T  S  N  S  L  L  L  C  F  N  G  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T  G  N  R   : *  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : V  W  *  R  G  W  R  D  I  V  K  Y  K  S  S  M  G  N  G  *  Y  I  N  V  H  S  F  S  G  Q  A  A  F  I  G  W  L  I  D  R  L  S  K  I  S :   *  H  L  E  G  A  C  Y  Q  L  E  K  G  S  S  P  W  D  N  M  A  K  V  K  C  R  S :   I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R   : R  H  S  C  Y  *  *  T  K  M  W  I  N  R  L  L  L  E  F  Q  W  Y  Q  *  T  R  L  D  *  L  S  I  L  L  *  N  G  G  L  L  E  F  E  Y  N  R  G  S  L  L  V  V  S  M  L  H  P  C  F  W  L  T  D  C  K  A  C  *  K  Y  Y  F  G  F  L  V  L  L  *  I  F  V  F  R  P  C  L  L  P  V  N  V  S  I  F  L  V  I  F  S  *  C  V  S  S  R  G  M  L  L  E  E  F  G  C  F  V  L  S  L  C  *  H  R  N  T  C  L  I  L  I  M  S  S  V  L  S  L  E  L  Y  D  V </first_frame>
            <second_frame>  I  W  L  S  P  N  S  S  C  Q  K  I  I  L  V  I  L  F  S  C  A  S  M  A  S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  E  I  A  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  C  G  E  E  V  G  E  T  L  L  N  I  S  R  A  W  E  M  A  D  T  S  T  S  T  A  L  V  D  K  L  P  L  L  V  G  S  L  T  G  S  Q  K  S   : V  S  I  W  K  A  L  V  I  S  W  K  K  V  P  V  H  G  T  I  W  R  R  *  S  A  E   : V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  :  D  I  P  V  T  D  R  L  K  C  G  S  T  D  C  Y  W  N  S  N  G  I  S  R  L  G  W  I  N  *  A  S  Y  F  K  M  V  A  S  S  N  L  S  I  I  E  V  L  C  S  *  F  Q  C  C  I  L  A  S  G  *  L  T  A  K  L  V  E  N  I  I  L  A  S  W  F  F  C  K  F  L  F  L  G  H  V  F  F  Q  S  M  Y  Q  Y  S  L  *  S  S  R  D  V  F  P  Q  E  G  C  F  L  R  N  L  V  V  L  C  C  L  S  V  S  I  E  T  L  V  S  Y  *  *  C  Q  V  S  Y  L  *  N  F  M  M   </second_frame>
            <third_frame>   Y  G  S  R  P  T  P  V  V  K  K  *  Y  *  *  F  S  S  L  V  L  Q  W  L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R  K  S  L :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  S :   V  V  K  R  L  E  R  H  C  *  I  *  V  E  H  G  K  W  L  I  H  Q  R  P  Q  L  *  W  T  S  C  L  Y  W  L  A  H  *  Q  A  L  K  N  Q  :  L  A  F  G  R  R  L  L  S  A  G  K  R  F  Q  S  M  G  Q  Y  G  E  G  E  V  Q  K  :  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K :   T  F  L  L  L  I  D  *  N  V  D  Q  Q  T  V  T  G  I  P  M  V  S  V  D  S  V  G  L  T  K  H  L  T  L  K  W  W  P  P  R  I  *  V  *  *  R  F  F  A  R  S  F  N  V  A  S  L  L  L  A  N  *  L  Q  S  L  L  K  I  L  F  W  L  L  G  S  F  V  N  F  C  F  *  A  M  S  S  S  S  Q  C  I  N  I  P  C  D  L  L  V  M  C  F  L  K  R  D  A  S  *  G  I  W  L  F  C  V  V  S  L  L  A  *  K  H  L  S  H  I  D  N  V  K  C  L  I  F  R  T  L  *  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119964" stop="119671"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="118035" stop="117903"/>
                    <exon start="117809" stop="117739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLSPNSSCQKIILVILFSCASMASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQEIAESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLTGSQKSVSIWKALVISWKKVPVHGTIWRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117738" stop="117729"/>
                    <exon start="112240" stop="112191"/>
                    <exon start="112116" stop="112046"/>
                    <exon start="111962" stop="111872"/>
                    <exon start="111796" stop="111686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAEVSGVDVEEFKQQTRMFKFGDLQVELTSGKAYTGAAIAFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLILLGGQLKSENK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="127888" PGL_stop="121405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127888" e_stop="127614"/>
            <exon e_start="126706" e_stop="126632"/>
            <exon e_start="125342" e_stop="125254"/>
            <exon e_start="123566" e_stop="123482"/>
            <exon e_start="122899" e_stop="122818"/>
            <exon e_start="121799" e_stop="121405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127888" e_stop="127614" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126706" e_stop="126632" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.994">
            <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125342" e_stop="125254" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.898">
            <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123566" e_stop="123482" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.968">
            <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122899" e_stop="122818" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="121799" e_stop="121405" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127888" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTAAATAGTATTGGGTACAAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG : AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA : GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG : GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG : CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG : GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAGATGTTA</gDNA_template>
            <first_frame> N  *  I  V  L  G  T  K  *  N  T  A  K  G  P  N  R  V  L  F  S  R  G  L  V  *  V  A  V  A  G  A  *  R  W  L  W  K  L  K  P  R  S  W  S  R  Q  D  K  Y  *  V  K  H  H  S  *  K  L  E  R  G  L  T  F  Q  L  R  M  A  L  F  T  P  L  L  P  G  S  V  L  L  Y  L  R  I  P  T  L  L  I  R :   D  Q  Q  S  K  L  L  V  I  K  P  M  E  Q  F  L  S  L  V  P  L  F  L  L  E :   L  L  R  *  W  L  E  R  H  R  Q  T  *  C  V  L  I  P  N  L  C  V  R  N  L  L  A  L  L   : G  N  K  M  S  E  Q  L  R  L  T  K  S  T  C  I  C  P  S  D  R  V  I  L  F  V  H  W  C :   Y  H  L  E  M  Q  E  H  I  I  C  Q  P  Q  K  M  S  W  V  L  Y  L  L  K  V  Q  L  :  V  V  P  W  F  Q  L  V  G  Q  K  C  S  A  L  *  L  V  K  *  N  R  E  R  W  P  K  L  K  L  E  *  I  K  S  D  Y  V  A  L  N  C  N  H  R  R  R  W  V  Q  E  A  A  T  K  L  F  F  A  L  V  L  Y  I  *  E  F  D  R  F  A  P  L  F  C  C  A  L  Y  I  L  L  E  C  R  G  L  S  T  F  R  P  P  G  A  S  L  G  I  *  *  C  R  S  S  S  V  K  *  C  L  F  C  I  E  H  F  H  W  T  I  F  *  S  V  T  Y  F  L  R  C   </first_frame>
            <second_frame>  T  K  *  Y  W  V  Q  N  R  I  L  Q  K  A  R  T  E  F  C  F  R  E  D  L  F  E  *  P  L  L  E  H  D  D  G  Y  G  S  *  N  P  G  V  G  H  A  R  T  S  I  R  *  S  I  T  V  E  S  W  K  G  G  L  R  F  N  *  E  W  H  C  L  R  L  S  Y  R  V  P  F  S  Y  T  S  A  F  R  R  C  *  S   : E  I  N  S  R  S  Y  W  S  *  S  P  W  S  S  S  *  A  W  F  R  C  F  C  *   : S  Y  *  G  D  G  *  N  G  I  G  R  H  S  V  C  *  F  Q  I  C  A  *  E  I  Y  W  H  Y  *  :  A  T  R  C  Q  S  N  *  D  *  Q  S  R  H  A  F  V  L  P  T  G  *  Y  Y  S  C  I  G   : A  I  T  W  R  C  K  S  I  L  S  V  N  R  K  K  *  A  G  C  C  I  C  *  K  C  S  W :   W  Y  H  G  S  N  *  L  D  R  N  A  V  P  S  N  W  S  S  R  T  A  K  G  G  Q  S  *  S  L  S  R  S  N  Q  I  M  L  L  L  T  A  T  T  G  G  G  G  C  R  R  Q  L  P  S  F  S  L  L  L  Y  Y  T  F  K  S  L  I  D  L  L  L  Y  F  V  V  R  Y  T  F  C  *  N  V  E  D  F  L  L  S  A  H  Q  G  Q  V  W  G  Y  D  S  V  G  Q  A  Q  *  S  N  V  Y  F  V  L  S  T  S  I  G  P  F  F  N  L  L  H  I  F  *  D  V  </second_frame>
            <third_frame>   L  N  S  I  G  Y  K  I  E  Y  C  K  R  P  E  Q  S  F  V  F  E  R  T  C  L  S  S  R  C  W  S  M  T  M  A  M  E  A  E  T  Q  E  L  V  T  P  G  Q  V  L  G  K  A  S  Q  L  K  A  G  K  G  A  Y  V  S  T  E  N  G  T  V  Y  A  S  L  T  G  F  R  S  L  I  P  P  H  S  D  A  V  D  Q  :  R  S  T  V  E  V  T  G  H  K  A  H  G  A  V  P  K  P  G  S  V  V  F  A  R  :  V  T  K  V  M  A  R  T  A  S  A  D  I  V  C  V  D  S  K  S  V  R  E  K  F  T  G  I  I  R :   Q  Q  D  V  R  A  T  E  I  D  K  V  D  M  H  L  S  F  R  P  G  D  I  I  R  A  L  V  :  L  S  L  G  D  A  R  A  Y  Y  L  S  T  A  K  N  E  L  G  V  V  S  A  E  S  A  A   : G  G  T  M  V  P  I  S  W  T  E  M  Q  C  P  L  T  G  Q  V  E  P  R  K  V  A  K  V  E  A  *  V  D  Q  I  R  L  C  C  S  *  L  Q  P  Q  E  E  V  G  A  G  G  S  Y  Q  A  F  L  C  S  C  I  I  H  L  R  V  *  *  I  C  S  F  I  L  L  C  V  I  H  F  V  R  M  *  R  T  F  Y  F  P  P  T  R  G  K  F  G  D  M  I  V  *  V  K  L  S  K  V  M  F  I  L  Y  *  A  L  P  L  D  H  F  L  I  C  Y  I  F  F  E  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127886" stop="127614"/>
                    <exon start="126706" stop="126632"/>
                    <exon start="125342" stop="125254"/>
                    <exon start="123566" stop="123482"/>
                    <exon start="122899" stop="122818"/>
                    <exon start="121799" stop="121708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNSIGYKIEYCKRPEQSFVFERTCLSSRCWSMTMAMEAETQELVTPGQVLGKASQLKAGKGAYVSTENGTVYASLTGFRSLIPPHSDAVDQRSTVEVTGHKAHGAVPKPGSVVFARVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGDIIRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWTEMQCPLTGQVEPRKVAKVEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="138412" PGL_stop="139441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138412" e_stop="139441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="138412" e_stop="139441" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138412" stop="138953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138857" stop="139441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTCTCCAAAACTTAGAAGTAAATTGTGTACCTCTATCTGATATGATGGAAAGTGGAACTCCATGCAACCGAACGACTTCTGAGATATAGAGCCTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGGAATGAAGTGAGCAGACTTAGTTAATTTGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATATTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCCTCCTCGTTGATTTTTGCTTCTTTAGACTCTCCTCGCAACACCTATCTCGAATCCAGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGTGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATATTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATTGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  L  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  T  S  E  I  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  I  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  Y  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  L  I  F  A  S  L  D  S  P  R  N  T  Y  L  E  S  R  S  V  S  H  Q  *  T  A  F  L  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  L  V  L  P  A  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  G  L  D  F  P  C  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  V  S  N  S  N  L  S  E  *  R  H  I  V  N  Y  D  D  P  Y  R  L  H  T  *  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  C  S  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  T  *  K  *  I  V  Y  L  Y  L  I  *  W  K  V  E  L  H  A  T  E  R  L  L  R  Y  R  A  W  L  T  S  L  H  C  K  S  P  *  P  E  *  S  E  Q  T  *  L  I  C  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  *  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  S  S  Y  S  T  K  N  I  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  L  F  P  *  F  S  K  H  P  P  R  *  F  L  L  L  *  T  L  L  A  T  P  I  S  N  P  D  Q  F  L  I  S  K  L  L  S  F  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  V  S  R  N  L  Q  V  G  *  T  S  H  A  P  C  L  S  T  *  S  I  C  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  L  N  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  L  W  V  G  *  L  R  S  C  T  F  N  C </second_frame>
            <third_frame>   S  M  Q  C  S  P  K  L  R  S  K  L  C  T  S  I  *  Y  D  G  K  W  N  S  M  Q  P  N  D  F  *  D  I  E  P  G  *  L  L  C  I  V  S  H  L  N  R  N  E  V  S  R  L  S  *  F  V  N  N  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  R  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  L  H  P  T  P  P  K  I  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  S  S  L  N  S  Q  N  T  L  L  V  D  F  C  F  F  R  L  S  S  Q  H  L  S  R  I  Q  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  S  T  S  S  L  I  K  S  L  A  R  V  *  T  S  L  A  N  G  C  L  E  T  C  K  W  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  H  I  D  N  V  S  I  A  L  M  Q  T  L  L  Q  P  T  P  N  C  G  S  D  N  Y  V  H  A  P  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138849" stop="139115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYSSLNSQNTLLVDFCFFRLSSQHLSRIQISFSSVNCFPLILSRKEDLASTQAKNPPFSSTSSLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138579" stop="138803"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVNNYPNGVILTHCLWKTNHEVHCNSLPLPFRNRHSLKCPSRPLVFILYLLTIRALSNKINNVTLHPTPPKILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="140959" PGL_stop="140300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140959" e_stop="140300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="140959" e_stop="140300" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140959" stop="140300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTGATTTACATTGTGATTTGCTTAACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGATTGACTTCGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAATTTTGTAATCTTAGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGGTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGAGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGATTTCTGTATTGATCTGGATCCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTAGGAAAAGACTTTATTAGACCAAGTGCGTCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  D  L  H  C  D  L  L  N  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  A  I  L  M  *  T  W  L  S  *  K  *  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  *  S  *  I  V  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  S  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  L  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  I  S  V  L  I  W  I  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  E  K  T  L  L  D  Q  V  R  P  L  G </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  I  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  E  Q  Y  S  C  R  L  G  Y  P  R  N  D  *  L  R  C  N  F  G  Y  D  L  A  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  G  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  C  F  D  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  F  L  Y  *  S  G  S  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  T  S  R  V  V  R  K  R  L  Y  *  T  K  C  V  P  L   </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  *  F  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  C  G  S  N  T  H  V  D  L  V  I  L  E  M  I  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  V  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  V  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  E  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  D  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  G  K  D  F  I  R  P  S  A  S  P  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140822" stop="140301"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSCDFCGSNTHVDLVILEMIDFDVILGMTWLSPNFVILDCNAKTVTLAKPGTDPVVWEGDYTSTPVRIISFLRAKRMVSKECLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLDPGTRPISIPPYRMAPAELRELKAQLQELLGKDFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="140660" PGL_stop="140989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140660" e_stop="140989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="140660" e_stop="140989" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140660" stop="140989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCTAAGATTACAAAATTTGGAGAAAGCCAAGTCATACCCAAAATTACATCGAAGTCAATCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTTAAGCAAATCACAATGTAAATCAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  K  L  H  R  S  Q  S  F  L  G  *  P  S  L  H  E  Y  C  S  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  I  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  Y  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  L  S  K  S  Q  C  K  S  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  T  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  S  I  I  S  R  I  T  K  S  T  *  V  L  L  P  Q  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  *  A  N  H  N  V  N  Q  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140772" stop="140987"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNQVYMSIAPTKVTRQDLYTFSTITDSPTGVETRIGMLSKSQCKSRPVANEEDTYENVDPGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="142224" PGL_stop="141569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142224" e_stop="141569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="142224" e_stop="141569" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142224" stop="141569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACATCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAACTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACATGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAGTTGAAACCTCCAGTTTTCAAGGGTGCTGAATCTGATGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGGCATAGTGTAACGATTTGGCGTTGAGTTTGTGACCTATCAGTTTCAGGGGAACGCCAAAATGTGGTGGCGGTCATATGTTGAGTGTCAACCAGCACAGTCACCACCTATGACTTAGGCATCATTCTCTAGCTTATTTATGGAGAAGTATTTACCCCGGACTTTGAGGGATCGAAGGGGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCCTATGAGACTAAGTTTCGTGCATTATCCAAGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCATATTCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  G  *  L  H  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  S  *  N  L  Q  F  S  R  V  L  N  L  M  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  A  *  C  N  D  L  A  L  S  L  *  P  I  S  F  R  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  H  S  H  H  L  *  L  R  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  I  E  G  G  M  S  S  *  A  *  S  K  A  R  C  R  L  L  P  M  R  L  S  F  V  H  Y  P  S  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  L  *  R  D  *  G  Q  I  C  I  F  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  *  S  G  S  C  L  S  *  R  V  I  *  S  R  P  D  I  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  N  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  V  D  Y  M  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  V  E  T  S  S  F  Q  G  C  *  I  *  *  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  V  T  I  W  R  *  V  C  D  L  S  V  S  G  E  R  Q  N  V  V  A  V  I  C  *  V  S  T  S  T  V  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  F  T  P  D  F  E  G  S  K  G  G  *  V  P  E  P  R  A  R  Q  D  V  G  Y  C  L  *  D  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  Y  S  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  S  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  T  V  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  W  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  D  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  *  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  S  P  P  M  T  *  A  S  F  S  S  L  F  M  E  K  Y  L  P  R  T  L  R  D  R  R  G  D  E  F  L  S  L  E  Q  G  K  M  S  V  T  A  Y  E  T  K  F  R  A  L  S  K  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  L  H  I  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142222" stop="141908"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQGQTSPVFSAPAPQVPGVQHATVVAPRMDASLEIGTFPRLTTWPIMTSDQHELFSKFLKLKPPVFKGAESDDAYDFLVDCHELLHKMGIV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141802" stop="141569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFSSLFMEKYLPRTLRDRRGDEFLSLEQGKMSVTAYETKFRALSKYATQLCFSPQERIRRFVKGLRSDLHIPALQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="158116" PGL_stop="158401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158116" e_stop="158401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="158116" e_stop="158401" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158116" stop="158401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTATTTTTCTTTGAGAGGCTATAAGACTTTAGCAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACACCGGCAAGACAAGAAGCGTCCGAGCCAGCCACTAGGGCTGTAG</gDNA_template>
            <first_frame> L  G  L  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  F  F  F  E  R  L  *  D  F  S  K  I  S  F  F  L  S  F  F  R  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  P  A  R  Q  E  A  S  E  P  A  T  R  A  V  </first_frame>
            <second_frame>  *  V  C  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  A  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  P  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  I  F  L  *  E  A  I  R  L  *  Q  N  F  I  L  S  F  F  L  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  T  G  K  T  R  S  V  R  A  S  H  *  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="158165" stop="158401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLAKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRQDKKRPSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="158475" PGL_stop="159028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158475" e_stop="159028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="158475" e_stop="159028" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158475" stop="159028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCGTCCCATCTAGTACTAGGGCGGTGACTCCTCCACCGACTAAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTCCTTACTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCTGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGCCTCATTGGAAATAGGTACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTTTGGTTAACTATCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  R  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  T  T  T  P  T  Y  P  R  D  D  K  S  G  P  Y  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  L  I  G  N  R  Y  V  S  S  S  D  Y  R  A  D  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  F  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  V  P  S  S  T  R  A  V  T  P  P  P  T  K  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  L  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  N  Y  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   P  S  H  L  V  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  Y  H  P  N  L  P  Q  R  *  *  I  R  S  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  L  W  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  V  R  F  L  V  *  L  Q  G  R  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  L  T  I  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="158476" stop="159027"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVPSSTRAVTPPPTKEVVREGEEGETEQVQNEELPPQPTPEMINQVLTYLSGLSDQGQTPPVFSAPAPQALEVQHAATMAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVNYHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="160126" PGL_stop="159361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160126" e_stop="159361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="160126" e_stop="159361" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160126" stop="159796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159919" stop="159361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTACCAGGCTTGGCTAACGTCACGGTTTTAGCATTGCAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCCACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTATGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAAAAGATTACCTGTGATAACAGCATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCGTAACAATGGGCCCTCTCACCTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCGCGTCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTTTCTGGATTCAAGCATAGTTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCAGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> D  L  Y  Q  A  W  L  T  S  R  F  *  H  C  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  P  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  Y  D  H  *  Q  M  R  K  I  Y  K  K  M  W  I  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  K  D  Y  L  *  *  Q  H  L  M  S  P  L  P  T  A  Q  G  K  R  N  N  G  P  S  H  L  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  P  G  R  F  G  D  H  H  Y  L  D  H  R  V  L  Q  N  D  G  L  F  H  N  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  T  S  *  C  V  Q  S  P  H  I  H  N  T  F  W  I  Q  A  *  F  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  R  L  S  N  L  L  N  P  V  L  *  S  K  N  H  *  T  H  </first_frame>
            <second_frame>  I  C  T  R  L  G  *  R  H  G  F  S  I  A  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  H  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  M  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  V  K  *  Y  R  S  H  T  I  T  N  Q  K  I  T  C  D  N  S  I  *  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  L  T  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  A  V  L  V  T  T  I  T  S  T  T  A  S  S  R  M  T  A  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  S  L  P  T  S  I  T  L  S  G  F  K  H  S  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  *  T  L  S  S  R  V  R  T  I  K  L  T </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  *  P  L  A  N  E  E  D  I  *  E  N  V  D  P  G  S  N  N  T  E  A  I  Q  S  Q  T  K  R  L  P  V  I  T  A  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  M  C  P  V  S  P  H  P  *  H  F  L  D  S  S  I  V  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  Q  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159687" stop="159433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPAVLVTTITSTTASSRMTASSITTSTSNIWRSVTLFWTIPLNVSSLPTSITLSGFKHSSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 79 chains have been computed
$ 
$ memory statistics:
$ 26736 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2228 bytes was the average size of a spliced alignment
$ 16592 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1659 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 97 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 17:52:02
-->
