<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 21:50:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0203L19-bmJ2e/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-AXhmf4/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AXhmf4/sgn_marker_seqs" ref_id="SGN-M1656" ref_strand="+" ref_description="SGN-M1656 T0891 [cos_markers]">
      <seq>gagaaagctttcatcggtttgaccgctacctcaacttctcaaatcctctgatctctgaaaattttgatcctcgtgcttgtggttgggcatttggaatgaacatcattgatctaaatgagtggaggcgacaaaacatcacagaggtgtaccactcatggcaaaatcggaatcatgaaagacaactttggaagttggggaccctaccacctggtttgataaccttttggaagcgcacatatgcccttgaccgatcatggcatgtccttggacttggctacaatccaaatgttagccagaaggacatccaacgagcagcagtcatacactacaatggaaacttgaaaccatggcttgaaataagcatacccaagttccgggactactggtcaaaatttgttgactatgatcagacatttttgcgagagtgtaatatcaacaaattgggtggttcatgaagtgttctctgcacatatttctcctaattcctgaaatacagcgagcaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-bmJ2e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="+" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="95336" stop="96951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95636" g_stop="95802" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96312" g_stop="96651" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="507" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="+" ref_id="SGN-M1656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95636" e_stop="95802"/>
          <exon e_start="96312" e_stop="96651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGGGTATGAAATGAATTCTTTTCACTTATTTTTTTCAGGATTAGCATGTTCATTTAGCCATAATTTCACATGCTTTGCTTGGTCATGAAATTGATAGCCTGGAGGCTGGAGCAATATGGTCAATATTTCGTTAAGTATCATATCAGTTCCTGACCCTTGGGGCAATTTCTCTTTTTTCCAGTAAAAGGTCACTTTCACATTTAAGTTTTGTCCACACCCCAACCAAATCCCTGCCATGTCCTTTTTTTTTTTGGATCAAGTAAAAGATTTCATTAATAGTAACAAGGCCAACTTGGTCGTATACAAGAACCGCCATATGTCTTGTCCTGCCCTGTTCCTCCAATTAAACTCAACAATTGTATTGTTGTAGCCTTTGTAAGTTTTCTGGATGACTATGGCTTGTCATATCGATCTCGTTCTGTTACTAAAAATGTCAACATATACACTATACACCATCGATTTTCATGCATCATAAAGTTGTTCAAATAAGTCATGAAATTTTATCTGCACAGAATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCAT</genome_strand>
        <mrna_strand>GAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AXhmf4/sgn_marker_seqs" ref_id="SGN-M7992" ref_strand="+" ref_description="SGN-M7992 C2_At3g52155 [cosii_markers]">
      <seq>acaaacgccacaaaaagagtaaaatttgtttttatgaggaaaatggaatctatgctaagaatccagtacgaagacagattttttcaaggattagtttttgattacagaggatccaaacaaccccttgtattctaagctacaagaaacttttagcttgaagtgcaaattaatagtatgcattattgctcagctcagaggagaagaaatttgtagttgctagccaccattttgaatgctgagtagttgaagctaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactacaactcctgtaaaaaatcccaaatcaagaaaagcccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttctacttctacacaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatactgcttagacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggttggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcaagcttctattctgtggcagcaatggatgggcagacagctgagcacctacgacaagcaatatgtaactactcgagggatgagatctcaacagtcatgtgtatgggacacaatagaggatgggaggaggcagcctcagtgttgtcaggtgctactgtagaactaaagacttgtaatggtgctttgcttgagccactgggaagtcgtgggaagaagcattttctctggctgggacctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-bmJ2e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144706" stop="138567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144406" g_stop="143873" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="634" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141813" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="814" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141812" i_stop="140685" i_length="1128">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140684" g_stop="140567" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="931" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140566" i_stop="138891" i_length="1676">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.828" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="138890" g_stop="138867" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="932" r_stop="956" r_length="25" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-M7992" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144406" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141813"/>
          <exon e_start="140684" e_stop="140567"/>
          <exon e_start="138890" e_stop="138867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGCCACAAAAAGAGTAAAATTTATTTTTAGGAGGAAAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCATGTGAGTTCTCCTTCTGCTTGTGATTCTTGGTGGTGGTATTTTAGATAATGGAAGAGCATTTATAAATTGCATACAAATCTATTATGGGTGCTTCAAAAGATAAGAAATTTGCAGGACTGGAAGAGTGGAGTGCTCAAATGTTTGCTTGGATTATTGTACAAACAAATAAGTCTCACCATCAGCTGCAAATGTAAACCAGACAGGCAGCAAGTTAGTTTTGAAATCATATTATAACAGGCTAATAAAGAGGAAGGACATGAATTTTCTTCATTCCTTGATATGAGTGGTTAGGTATGTATTCGGGTGAGTCCTAGTGGTTAATGTAGTGGAGGGAGAACTATGAGGTCTTAGGTTCAAATCCTAGCGGAGGTGAAAACCACTAGATTATGTCTTCCAATCTGCCGAAGTCTTGGTTGGTTGAGTTTCAGTAACTCGATTTCTGTCCTGGTGAAAGGAAGTAGGTAGCAGGTACCCAGTGAAATGGCAGAGATAAGCGCAAGTTGTCCATGATACCACCACCATTTTGAAAAAGTGCTTAGCATACAGAGAAAGGTGTCATTTTTTAAGTACGACGTGGGAGCCATTCTTCATTGCAGGAAAAAACTTTACTATTTGTTGGTTTTGATGTGCAGGAAGACATGTGAAATGTCAGTCACTTGTTACGCTATATAAATTATGGTATACGGTATGGAGTATTTTGGGAGTTGAATTGGATTAGTCACAGAAGTGACTTGCATGGATATTCAGCTGGCAGATGTGTAGGAGGGTATAGGAGATACTCCCTAATCACTTTCTTGGATCACAAGGAATGAGAGAAACATAAAAGCATAAGAGTTAAAGAAAACCCTTTTCTACAATTGTTTCTTTTTGTACGCTTTGGAGTATAAAAGATATTTCTATCAGTAGTGATGACCAGACGGTCTTTGTAGATATTTATGTTTTTTGAAATACTTTGCTTTTGCATGCAGTTAGTGTAAAGGGTTGTCCTATTAACCTCAATACAATTATTGGATTTTTACGACCTTCTATTTTATCTCCGGTTTGAGAAATGACAGTTCATTATGTCAATTGACAGTTATTGGGTAAAGTGCTTCATAGTAAAATACTAAAATTTGATCCTCTATTCAGGTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTGAAGCCACTGGGAAGTCGTGGGAAGAGGTATTGTATCTGTAACTGCTGGTTCCATTTTACCGGTCTTACTTTGGCAATTCAATTGCATTACAGTAGCAAATGGTTGGTTGGTATACCGAGTTCCACTGTGAAATGAAATGCTATTGACCCCCAAAATAGGGCCTGTTATTACTTTGTCGTATCGTTTTACAGCCCTGCTTTCTTCTTGCCGTCGTATAAGAACGAAATTTGAACATCTGTTCCCCCTTAGCTTTTGTCATCCCAAGTTAATTCTCTCCTGTCTTAACCAGAACTCCTAACTAGCTACTTTCCTATTATAAGTCAACCAAATCTGATCTATGGTAGTGATCTGTAATTTGGTAGCTAGGAATTTCATGAACTCCATTGTTATTAGAGTGTAGAAATATTCACTTTATCTTATCAGAAAATGACAATCTGCTTTAAAGACTTCAACTATCTGTTGGTAGGTTAGTTCACGAAAATTATTGAATACCTAGCAAGCAAATGAGTATCAACTCAAACAACAACTACTCTTCAGTATCAAACAAGTTGAAATCAGCTATATGAATCCTCGCTGATTATGTTTCTCCTATTAAAATTCATATTAGCGCAATATTATACAAAATAAAAATAACAAGTACTAGAATTTCTCTATATTTTCTTTCAGTGGAAAAATCTCTACTAAGGCTAAAAGACTATAGAAATAATATTACCTAAAGTAACATACTAATATGACTGAAACGACCATTGTGCCCTACATGGATTTTGAAAGATTGTAGGCCTTTTGAGACAATTTCCTTCCGTGTTAGGTCTATCTTGTTCCACACCTTTACTCACCATGGTATCTCACCTACGGACTGGTGCATTGGGAGGTCAACGACTGGATATGACGGTCAACGACTGGATATGACCAAACTATCTTTAGCAACCTTCTCGCATTTTATCCTCACTGTGTGTTGCTAGTACCTTATAATGAATAATGAATATTGACATTTTTAATCTTGTCTAATATGGTATAACCACACATCTATTTTAGTATCACATCTCTGAGACTATCATGTGGATGTGTTGGATTTTAGTGACACAAGGCCCAACATTCACTCCTAAGAGCATATATCACAAATTGAGGGTGAACTAAAAATAGGTCCGAGTGTTTGGCTTGTGACCGAAATTTAGGGGGGCAGTGCTGGTCGATTTTTGAGTACTTTGTTCCAGATCAATGGAAAACAGTTGATTTCATACAATATTTTCTCCCATTGCTTCTATAAGGAGTCATAAATGCACGACTATGTTTTCAGACAAATGGAATATGTAAATATTACTTTCCCATCTTTCACTTTTTCCTTTTTATCTTTCTAACTGGTTCTTTGCACCCTAAAATATTGTGAAGTCTAATCATCATTTGCATTAAATGTTATGTATTGGAATTAGGTTATTACCATATCCGAATGGAAGGCAGACATTTCTAAAGAGAATAATGGCTCTTTATAGATACTTCTAATTTTGGATACAGATTCTTGAAAAGTGATCTCCAAAAACAGGAAGAGAACAACTTAAAGACGCATATTTGTCTGTGAGGAACCATATCCGAGTCTTAGATACAAAGATGATTGTGTGTGCTTTATGGAACTTTATAGCTTCATAATTCACAAAATGAAGTTTCTGAAATGTTTGATCTTCTCTAACTTAAGTGCTCTCCTCAGGCATTTTCTCTGGCT-GGACCTGGA</genome_strand>
        <mrna_strand>ACAAACGCCACAAAAAGAGTAAAATTTGTTTTTATGAGGAAAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTG-AGCCACTGGGAAGTCGTGGGAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTCTCTGGCTGGGACCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AXhmf4/sgn_marker_seqs" ref_id="SGN-M7992-2" ref_strand="+" ref_description="SGN-M7992-2 C2_At3g52155-2 [cosii_markers]">
      <seq>gaaatttgtagttgctagccatcattttgaatgctgagtaattgaaggtaccaagaaaatgaatgttgtagtagcatctcttgtggaaccattacaagtaccatacaactactactcctgtaaaaaatcccaaatcaagaaaaacccaaaatgtgttatggttgcttcatctagtagtggtgttggttctcttgtaattgaaaccaatcaagatcagcagcagatttccacttctacagaaaccccaacaacaaccctatcgtcagttgctgctcgtcgactcatattgcttcgacatgcgaagagttcttgggagaatcgctctattcgggatcatgatcgtcctttgagtagatctggacaacttgatgctatcaaggtctcgcaaaaccttctaaaactgggctggattccacaacttattttatcaagtgatgcactgcgaacgcgggaaacactgaaaataatgcaggagcaagttcaagcctttttggaagctgaagtacattttatttcaagtttctattctgtggcagcaatggatgggcagacagctggagcacctacgacaagcaatatgtaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-bmJ2e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="144504" stop="141540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144204" g_stop="143873" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656">
            <donor d_prob="0.872" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142216" g_stop="142117" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="432" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141992" g_stop="141840" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="586" r_length="154" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-M7992-2" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7992-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144204" e_stop="143873"/>
          <exon e_start="142216" e_stop="142117"/>
          <exon e_start="141992" e_stop="141840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGGGTAATCATCTTTAGCTACTAAAATCTTTAAAAAAAGAAGTGCTTGATTAGGAATAAGCATGAAACCCTTTTTCTGTTTCCCTGTTTTATTCAGTAGTTTTAAATCAATTACTTGAGCTATATCCATGAACCCCCTTTTCTGTTTCCCTGTTTAGATTCAGTAGTTTTAAGGATTAGTCCATTACTTGAGCTATATCCATGAACCCCTTTTGTTTTCCCTGTTCAATTAGTCCATTACTTGAGCTACATCCATGAACCCCTGTTCTTTTCCCTGTTCAATTCTGTAGTTTTAAGGATTAATCCATTACTTGAGCTATATCCATGAACCCCTTTTCTTTTCCCTGTTTAATTCTGTACTTTTAACGACTAAGCACCTAACAGATTCAACCACAGCTACAAACCCAGTGTAATCTAACACTGATGGTGTTTGAGGATGGTAAAGTGTACACAAACATTATCCCTACCTTCGGAAGTTAAGGTAGAGAGACTGTTTCCAATAGACCCTTGAATGATGACCTAAAAGATTCAAGTGTATGCAATTAGGAGCTCCGATTTCTGTTCTGTTTTGAAGCTAAATGATAATACTGTAGTACAAGGTGTTAACTTTGTGCGATACTGACTTTTCATTACTGAATTTGGGCTCTTTTGTTGAACATGGTGTCGAATGTTCTTTTAAGTTTTTGTATGGATTGAAAAAAGAATTTTGCTTTTTTCTTTTGGTTTTGGTGAAATTTGGGCAAGCTAGTAGTTTTTGTTCTCATCAGTGACTAGTTCGGAGTATTTGAGCTGATGATCTAATGGAAACAACCTCCGTAACTTCTTTAGGTAGGGGTAAGGTCAGCGTATACTCTACCCTCGGAGACCCCACTTGTGGTATTGCATTATGTTTATTGTTGTTGTTGTAGTGGCTAGTTCGGAGGAAATCATAATTGAAAAGGAGCACCCTCTGATTCAGGCACATACAGTTGTCTGGGTGCATTTGAAGTTTTACCATAAGGCAAAGGGCTTTAGTCAGTTTCCCTAGAATTAGTCTTAACAATTGTAAAATTAAAAGTGTTTTACAATGAAGTAATGACTTTTACCTCTAAATGGTTTTCTTTTTCTGTCGTGTTCGACATTATTTCTCTTTTCTTCAGTAATGGACTTGCCTCTCAAAAATGCACCTGCGTTGAAGTCACTCCTTATGTCTTCATCTTCCAGGTGCAGTAGAATGAAGAACTAAATATAATCTTGTCGACTGAAGTCCGTAGAACCGAATTATATTCTTGTTTCATTTTGAAAATATTAGTAGCACTTCCCTGATGCAGAAACAGGAGAACACCTGAAGTTGGTTCTTATGTTTGTTTTCTCTTGTAATCTATGTAGAGTAGAGTAGTACAGTAATTTCTTTTGCCTCATAGAAGTGGTTAAATAGGATTGAAGTGTAGAGAGACAGGAAGGAGTACTCTTTGGATTCTGTTTTTTGAAACTGTGAGTTGTAATGGGTGAAACACAGCTCAATTTTGATGCTCCAACGACTTGCATTCCATACCTCATGCAAATTTTCCTCTTGTAATATAAACAATTACAGGAAAAGTTTACTGTGTTTCTCCATAAACATAAAAGTAGCTATATTCATAGGTTTAATATAATGCTTCATCATTATGTTCTTGAGCAGATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAGGTTAGTGGTTCTTTAAGAATATCTACTTACCTTGAAGGGAGTCTGCTCTGAGATCTTTAAGCTGGCTATAAATTATGTTGATATTAACAAACTAAGTGATCATTTTGTTTTCCTTATTGCATAGTGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCT-GAGCACCTACGACAAGCAATATGTAACTA</genome_strand>
        <mrna_strand>GAAATTTGTAGTTGCTAGCCATCATTTTGAATGCTGAGTAATTGAAGGTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACTACTCCTGTAAAAAATCCCAAATCAAGAAAAACCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCCACTTCTACAGAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATATTGCTTCGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGCTGGATTCCACAACTTATTTTATCAAG............................................................................................................................TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGTTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGGAGCACCTACGACAAGCAATATGTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AXhmf4/sgn_marker_seqs" ref_id="SGN-M1740" ref_strand="+" ref_description="SGN-M1740 T1070 [cos_markers]">
      <seq>atgcattgaagctcccaactatcacaaactggtacccttggtatgacaataaaaaggttggaggatggagccaaatatacaaagggttaacccttgtaactataacaagagcagggcatgaagttcctcttcatcgccctcgtcaagctttcattctattcagatcatttttggagaacaagcccatgccaagctaaacaaagtcaatctgtagagaatcttcgattgatcatgttgtcaaaggaccagagataacgatataatccctcatttctttcccctcgactggtatatcagtaaaggccgcgggggagattcaagattattacttacacctcaataatgctatacaatggctacattagaatttccattcatatattagtttgacttcatttgtagataaaagcattccatgtaaatggagtttccagttgaagacattcttattataggaaaatcctacttgtttggagacaaatttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203L19-bmJ2e/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0203L19.1" temp_strand="-" temp_description="C04HBa0203L19.1  CU074307.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0203L19 sequenced_by:sanger upload_account_name:uk">
        <position start="145629" stop="144426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145329" g_stop="145274" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145156" g_stop="144726" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="487" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203L19.1" gen_strand="-" ref_id="SGN-M1740" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203L19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145329" e_stop="145274"/>
          <exon e_start="145156" e_stop="144726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAGGTTAGTCATAAATGGACAATGCAAACTGTTTTCCTCTTGGCAACCTTTGCATCTTTTCCTCTCAAGTATCAAAAAATTCATTCTTTCGTTTGTATCTTGTCGTTATTCTATGAATAGGTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGAC</genome_strand>
        <mrna_strand>ATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG.....................................................................................................................GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAAGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="95636" PGL_stop="96651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95636" e_stop="95802"/>
            <exon e_start="96312" e_stop="96651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95636" e_stop="95802" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.906">
            <gDNA_intron_boundary i_start="95803" i_stop="96311" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96312" e_stop="96651" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95636" stop="95802"/>
              <exon start="96312" stop="96651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAAGCTTTCATCGGTTTGACCGCTACCTCAACTTCTCAAATCCTCTGATCTCTGAAAATTTTGATCCTCGTGCTTGTGGTTGGGCATTTGGAATGAACATCATTGATCTAAATGAGTGGAGGCGACAAAACATCACAGAGGTGTACCACTCATGGCAAAATCGG : AATCATGAAAGACAACTTTGGAAGTTGGGGACCCTACCACCTGGTTTGATAACCTTTTGGAAGCGCACATATGCCCTTGACCGATCATGGCATGTCCTTGGACTTGGCTACAATCCAAATGTTAGCCAGAAGGACATCCAACGAGCAGCAGTCATACACTACAATGGAAACTTGAAACCATGGCTTGAAATAAGCATACCCAAGTTCCGGGACTACTGGTCAAAATTTGTTGACTATGATCAGACATTTTTGCGAGAGTGTAATATCAACAAATTGGGTGGTTCATGAAGTGTTCTCTGCACATATTTCTCCTAATTCCTGAAATACAGCGAGCAAGCAT</gDNA_template>
            <first_frame> E  K  A  F  I  G  L  T  A  T  S  T  S  Q  I  L  *  S  L  K  I  L  I  L  V  L  V  V  G  H  L  E  *  T  S  L  I  *  M  S  G  G  D  K  T  S  Q  R  C  T  T  H  G  K  I  G :   I  M  K  D  N  F  G  S  W  G  P  Y  H  L  V  *  *  P  F  G  S  A  H  M  P  L  T  D  H  G  M  S  L  D  L  A  T  I  Q  M  L  A  R  R  T  S  N  E  Q  Q  S  Y  T  T  M  E  T  *  N  H  G  L  K  *  A  Y  P  S  S  G  T  T  G  Q  N  L  L  T  M  I  R  H  F  C  E  S  V  I  S  T  N  W  V  V  H  E  V  F  S  A  H  I  S  P  N  S  *  N  T  A  S  K  H </first_frame>
            <second_frame>  R  K  L  S  S  V  *  P  L  P  Q  L  L  K  S  S  D  L  *  K  F  *  S  S  C  L  W  L  G  I  W  N  E  H  H  *  S  K  *  V  E  A  T  K  H  H  R  G  V  P  L  M  A  K  S   : E  S  *  K  T  T  L  E  V  G  D  P  T  T  W  F  D  N  L  L  E  A  H  I  C  P  *  P  I  M  A  C  P  W  T  W  L  Q  S  K  C  *  P  E  G  H  P  T  S  S  S  H  T  L  Q  W  K  L  E  T  M  A  *  N  K  H  T  Q  V  P  G  L  L  V  K  I  C  *  L  *  S  D  I  F  A  R  V  *  Y  Q  Q  I  G  W  F  M  K  C  S  L  H  I  F  L  L  I  P  E  I  Q  R  A  S   </second_frame>
            <third_frame>   E  S  F  H  R  F  D  R  Y  L  N  F  S  N  P  L  I  S  E  N  F  D  P  R  A  C  G  W  A  F  G  M  N  I  I  D  L  N  E  W  R  R  Q  N  I  T  E  V  Y  H  S  W  Q  N  R  :  N  H  E  R  Q  L  W  K  L  G  T  L  P  P  G  L  I  T  F  W  K  R  T  Y  A  L  D  R  S  W  H  V  L  G  L  G  Y  N  P  N  V  S  Q  K  D  I  Q  R  A  A  V  I  H  Y  N  G  N  L  K  P  W  L  E  I  S  I  P  K  F  R  D  Y  W  S  K  F  V  D  Y  D  Q  T  F  L  R  E  C  N  I  N  K  L  G  G  S  *  S  V  L  C  T  Y  F  S  *  F  L  K  Y  S  E  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95638" stop="95802"/>
                    <exon start="96312" stop="96599"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESFHRFDRYLNFSNPLISENFDPRACGWAFGMNIIDLNEWRRQNITEVYHSWQNRNHERQLWKLGTLPPGLITFWKRTYALDRSWHVLGLGYNPNVSQKDIQRAAVIHYNGNLKPWLEISIPKFRDYWSKFVDYDQTFLRECNINKLGGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="144406" PGL_stop="138867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144406" e_stop="143873"/>
            <exon e_start="142216" e_stop="142117"/>
            <exon e_start="141992" e_stop="141813"/>
            <exon e_start="140684" e_stop="140567"/>
            <exon e_start="138890" e_stop="138867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.809" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.828" e_score="0.983"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="144406" e_stop="143873" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.992">
            <gDNA_intron_boundary i_start="143872" i_stop="142217" i_length="1656"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142216" e_stop="142117" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142116" i_stop="141993" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="141992" e_stop="141813" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.809" acc_prob="0.997">
            <gDNA_intron_boundary i_start="141812" i_stop="140685" i_length="1128"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="140684" e_stop="140567" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.828">
            <gDNA_intron_boundary i_start="140566" i_stop="138891" i_length="1676"/>
          </intron>
          <exon e_serial="5" e_score="0.917">
            <gDNA_exon_boundary e_start="138890" e_stop="138867" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144406" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141813"/>
              <exon start="140684" stop="140567"/>
              <exon start="138890" stop="138867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144204" stop="143873"/>
              <exon start="142216" stop="142117"/>
              <exon start="141992" stop="141840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7992-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAACGCCACAAAAAGAGTAAAATTTATTTTTAGGAGGAAAATGGAATCTATGCTAAGAATCCAGTACGAAGACAGATTTTTTCAAGGATTAGTTTTTGATTACAGAGGATCCAAACAACCCCTTGTATTCTAAGCTACAAGAAACTTTTAGCTTGAAGTGCAAATTAATAGTATGCATTATTGCTCAGCTCAGAGGAGAAGAAATTTGTAGTTGCTAGCCACCATTTTGAATGCTGAGTAGTTGAAGCTACCAAGAAAATGAATGTTGTAGTAGCATCTCTTGTGGAACCATTACAAGTACCATACAACTACAACTCCTGTAAAAAATCCCAAATCAAGAAAAGCCCAAAATGTGTTATGGTTGCTTCATCTAGTAGTGGTGTTGGTTCTCTTGTAATTGAAACCAATCAAGATCAGCAGCAGATTTCTACTTCTACACAAACCCCAACAACAACCCTATCGTCAGTTGCTGCTCGTCGACTCATACTGCTTAGACATGCGAAGAGTTCTTGGGAGAATCGCTCTATTCGGG : ATCATGATCGTCCTTTGAGTAGATCTGGACAACTTGATGCTATCAAGGTCTCGCAAAACCTTCTAAAACTGGGTTGGATTCCACAACTTATTTTATCAAG : TGATGCACTGCGAACGCGGGAAACACTGAAAATAATGCAGGAGCAAGTTCAAGCCTTTTTGGAAGCTGAAGTACATTTTATTTCAAGCTTCTATTCTGTGGCAGCAATGGATGGGCAGACAGCTGAGCACCTACGACAAGCAATATGTAACTACTCGAGGGATGAGATCTCAACAGTCAT : GTGTATGGGACACAATAGAGGATGGGAGGAGGCAGCCTCAGTGTTGTCAGGTGCTACTGTAGAACTAAAGACTTGTAATGGTGCTTTGCTTGAAGCCACTGGGAAGTCGTGGGAAGAG : GCATTTTCTCTGGCTGGACCTGGA</gDNA_template>
            <first_frame> T  N  A  T  K  R  V  K  F  I  F  R  R  K  M  E  S  M  L  R  I  Q  Y  E  D  R  F  F  Q  G  L  V  F  D  Y  R  G  S  K  Q  P  L  V  F  *  A  T  R  N  F  *  L  E  V  Q  I  N  S  M  H  Y  C  S  A  Q  R  R  R  N  L  *  L  L  A  T  I  L  N  A  E  *  L  K  L  P  R  K  *  M  L  *  *  H  L  L  W  N  H  Y  K  Y  H  T  T  T  T  P  V  K  N  P  K  S  R  K  A  Q  N  V  L  W  L  L  H  L  V  V  V  L  V  L  L  *  L  K  P  I  K  I  S  S  R  F  L  L  L  H  K  P  Q  Q  Q  P  Y  R  Q  L  L  L  V  D  S  Y  C  L  D  M  R  R  V  L  G  R  I  A  L  F  G  :  I  M  I  V  L  *  V  D  L  D  N  L  M  L  S  R  S  R  K  T  F  *  N  W  V  G  F  H  N  L  F  Y  Q   : V  M  H  C  E  R  G  K  H  *  K  *  C  R  S  K  F  K  P  F  W  K  L  K  Y  I  L  F  Q  A  S  I  L  W  Q  Q  W  M  G  R  Q  L  S  T  Y  D  K  Q  Y  V  T  T  R  G  M  R  S  Q  Q  S   : C  V  W  D  T  I  E  D  G  R  R  Q  P  Q  C  C  Q  V  L  L  *  N  *  R  L  V  M  V  L  C  L  K  P  L  G  S  R  G  K  R :   H  F  L  W  L  D  L   </first_frame>
            <second_frame>  Q  T  P  Q  K  E  *  N  L  F  L  G  G  K  W  N  L  C  *  E  S  S  T  K  T  D  F  F  K  D  *  F  L  I  T  E  D  P  N  N  P  L  Y  S  K  L  Q  E  T  F  S  L  K  C  K  L  I  V  C  I  I  A  Q  L  R  G  E  E  I  C  S  C  *  P  P  F  *  M  L  S  S  *  S  Y  Q  E  N  E  C  C  S  S  I  S  C  G  T  I  T  S  T  I  Q  L  Q  L  L  *  K  I  P  N  Q  E  K  P  K  M  C  Y  G  C  F  I  *  *  W  C  W  F  S  C  N  *  N  Q  S  R  S  A  A  D  F  Y  F  Y  T  N  P  N  N  N  P  I  V  S  C  C  S  S  T  H  T  A  *  T  C  E  E  F  L  G  E  S  L  Y  S  G :   S  *  S  S  F  E  *  I  W  T  T  *  C  Y  Q  G  L  A  K  P  S  K  T  G  L  D  S  T  T  Y  F  I  K  :  *  C  T  A  N  A  G  N  T  E  N  N  A  G  A  S  S  S  L  F  G  S  *  S  T  F  Y  F  K  L  L  F  C  G  S  N  G  W  A  D  S  *  A  P  T  T  S  N  M  *  L  L  E  G  *  D  L  N  S  H  :  V  Y  G  T  Q  *  R  M  G  G  G  S  L  S  V  V  R  C  Y  C  R  T  K  D  L  *  W  C  F  A  *  S  H  W  E  V  V  G  R   : G  I  F  S  G  W  T  W  </second_frame>
            <third_frame>   K  R  H  K  K  S  K  I  Y  F  *  E  E  N  G  I  Y  A  K  N  P  V  R  R  Q  I  F  S  R  I  S  F  *  L  Q  R  I  Q  T  T  P  C  I  L  S  Y  K  K  L  L  A  *  S  A  N  *  *  Y  A  L  L  L  S  S  E  E  K  K  F  V  V  A  S  H  H  F  E  C  *  V  V  E  A  T  K  K  M  N  V  V  V  A  S  L  V  E  P  L  Q  V  P  Y  N  Y  N  S  C  K  K  S  Q  I  K  K  S  P  K  C  V  M  V  A  S  S  S  S  G  V  G  S  L  V  I  E  T  N  Q  D  Q  Q  Q  I  S  T  S  T  Q  T  P  T  T  T  L  S  S  V  A  A  R  R  L  I  L  L  R  H  A  K  S  S  W  E  N  R  S  I  R   : D  H  D  R  P  L  S  R  S  G  Q  L  D  A  I  K  V  S  Q  N  L  L  K  L  G  W  I  P  Q  L  I  L  S  S :   D  A  L  R  T  R  E  T  L  K  I  M  Q  E  Q  V  Q  A  F  L  E  A  E  V  H  F  I  S  S  F  Y  S  V  A  A  M  D  G  Q  T  A  E  H  L  R  Q  A  I  C  N  Y  S  R  D  E  I  S  T  V  M :   C  M  G  H  N  R  G  W  E  E  A  A  S  V  L  S  G  A  T  V  E  L  K  T  C  N  G  A  L  L  E  A  T  G  K  S  W  E  E  :  A  F  S  L  A  G  P  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144167" stop="143873"/>
                    <exon start="142216" stop="142117"/>
                    <exon start="141992" stop="141813"/>
                    <exon start="140684" stop="140567"/>
                    <exon start="138890" stop="138867"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEATKKMNVVVASLVEPLQVPYNYNSCKKSQIKKSPKCVMVASSSSGVGSLVIETNQDQQQISTSTQTPTTTLSSVAARRLILLRHAKSSWENRSIRDHDRPLSRSGQLDAIKVSQNLLKLGWIPQLILSSDALRTRETLKIMQEQVQAFLEAEVHFISSFYSVAAMDGQTAEHLRQAICNYSRDEISTVMCMGHNRGWEEAASVLSGATVELKTCNGALLEATGKSWEEAFSLAGPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="145329" PGL_stop="144726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145329" e_stop="145274"/>
            <exon e_start="145156" e_stop="144726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145329" e_stop="145274" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.992">
            <gDNA_intron_boundary i_start="145273" i_stop="145157" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="145156" e_stop="144726" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145329" stop="145274"/>
              <exon start="145156" stop="144726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCATTGAAGCTCCCAACTATCACAAACTGGTACCCTTGGTATGACAATAAAAAG : GTTGGAGGATGGAGCCAAATATACAAAGGGTTAACCCTTGTAACTATAACAGGAGCAGGGCATGAAGTTCCTCTTCATCGCCCTCGTCAAGCTTTCATTCTATTCAGATCATTTTTGGAGAACAAGCCCATGCCAAGCTAAACAAAGTCAATCTGTAGAGAATCTTCGATTGATCATGTTGTCAAAGGACCAGAGATAACGATATAATCCCTCATTTCTTTCCCCTCGACTGGTATATCAGTAAAGGCCGCGGGGGAGATTCAAGATTATTACTTACACCTCAATAATGCTATACAATGGCTACATTAGAATTTCCATTCATATATTAGTTTGACTTCATTTGTAGATAAAAGCATTCCATGTAAATGGAGTTTCCAGTTGAAGACATTCTTATTATAGGAAAATCCTACTTGTTTGGAGACAAATTTGAC</gDNA_template>
            <first_frame> M  H  *  S  S  Q  L  S  Q  T  G  T  L  G  M  T  I  K  R :   L  E  D  G  A  K  Y  T  K  G  *  P  L  *  L  *  Q  E  Q  G  M  K  F  L  F  I  A  L  V  K  L  S  F  Y  S  D  H  F  W  R  T  S  P  C  Q  A  K  Q  S  Q  S  V  E  N  L  R  L  I  M  L  S  K  D  Q  R  *  R  Y  N  P  S  F  L  S  P  R  L  V  Y  Q  *  R  P  R  G  R  F  K  I  I  T  Y  T  S  I  M  L  Y  N  G  Y  I  R  I  S  I  H  I  L  V  *  L  H  L  *  I  K  A  F  H  V  N  G  V  S  S  *  R  H  S  Y  Y  R  K  I  L  L  V  W  R  Q  I  *  </first_frame>
            <second_frame>  C  I  E  A  P  N  Y  H  K  L  V  P  L  V  *  Q  *  K   : G  W  R  M  E  P  N  I  Q  R  V  N  P  C  N  Y  N  R  S  R  A  *  S  S  S  S  S  P  S  S  S  F  H  S  I  Q  I  I  F  G  E  Q  A  H  A  K  L  N  K  V  N  L  *  R  I  F  D  *  S  C  C  Q  R  T  R  D  N  D  I  I  P  H  F  F  P  L  D  W  Y  I  S  K  G  R  G  G  D  S  R  L  L  L  T  P  Q  *  C  Y  T  M  A  T  L  E  F  P  F  I  Y  *  F  D  F  I  C  R  *  K  H  S  M  *  M  E  F  P  V  E  D  I  L  I  I  G  K  S  Y  L  F  G  D  K  F  D </second_frame>
            <third_frame>   A  L  K  L  P  T  I  T  N  W  Y  P  W  Y  D  N  K  K  :  V  G  G  W  S  Q  I  Y  K  G  L  T  L  V  T  I  T  G  A  G  H  E  V  P  L  H  R  P  R  Q  A  F  I  L  F  R  S  F  L  E  N  K  P  M  P  S  *  T  K  S  I  C  R  E  S  S  I  D  H  V  V  K  G  P  E  I  T  I  *  S  L  I  S  F  P  S  T  G  I  S  V  K  A  A  G  E  I  Q  D  Y  Y  L  H  L  N  N  A  I  Q  W  L  H  *  N  F  H  S  Y  I  S  L  T  S  F  V  D  K  S  I  P  C  K  W  S  F  Q  L  K  T  F  L  L  *  E  N  P  T  C  L  E  T  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203L19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145327" stop="145274"/>
                    <exon start="145156" stop="145016"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALKLPTITNWYPWYDNKKVGGWSQIYKGLTLVTITGAGHEVPLHRPRQAFILFRSFLENKPMPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 9120 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 8072 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2690 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 21:50:31
-->
