<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-06 20:42:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317587" ref_strand="+" ref_description="SGN-U317587        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | aconitase family protein / aconitate hydratase family protein, contains Pfam profile PF00330: Aconitase family (aconitate hydratase | chr4:7803929-7807865 REVERSE | Aliases: T9E8.170, T9E8_170(evalue: 0, score=848) genbank/nr: 3-isopropylmalate(evalue: 0, score=873)">
      <seq>atcggccgaattgaacttcttcttctcttctaccccttaagatttagcagaacaaatctgttagcaatggcggcgtcttcagctatagcttcaagttctacaactttcatcaataagaaagatgtgggtctatctgccttctcttcacaagcttcattttccgttcaaactgctcggaaaaggatatccaagagaattgtttctgtgatgacacctcagcagactgaaagaaaacctgccacaactggatcagtaaagactggtatgactatgactgagaagatattagctaaggcttctgataagcctgatgtgagccctggtgataatgtctgggtgaatgttgatgttctgatgactcatgatgtttgtggccctggctctattggaattttcaagaaagagtttggacagaatgctaaggtctgggatcgtgaaaagcttgtcattatacctgaccattacatattcacaaccgacgaacgagcaaaccgtaacgtggatatcttgagggatttctgcaatgaacaaaatattaagtacttctatgacattaaagatttggggaacttccgtgctaatcctgattacaagggtgtctgccacgttgctcttgcacaagaaggtcactgcagacctggagaggttttgctgggtacagactcccacacatgtactgctggagctttcgggcaattcgccactggaattggcaatactgatgcaggttttgtgttgggtactggcaagattctgctcaaggtgcctccaactttgagatttgtaatggatggtgaaatgcctgattacttgcttgctaaggacttaattttgcaaattattggtgaaatttcagtggctggtgctacttataaagcaatggagtttgttggcacgacagttgaaagcttgactatggaagaaagaatgacattatgcaacatggttgttgaagctggtggaaaaaatggtgtcatcccagctgataaaacaacatatgactaccttgagggaaggacttctgtgccctatgaacctgtttatagtgatgaaggagccagatatcttaaggagtacagatttgatgtttccaagttggagcccttagtggctaagcctcattctcctgataatcgtgctttggcaagagaatgcaaagatgtcaaaatcgatagagtatatattggatcttgtactggtggaaagacagaggacttcatggctgctgcaaaagtttttctagcttccggaaagaaggtaaaggttcccactttccttgttcctgctacccaaaaggtatggatggatgtatatagcctcccagttccaggatcaggtggcaaaacatgttcccagatttttgaggaggcaggttgcgatacacctgcaagtcctagttgtggtgcttgtttgggtggccctaaagacacttatgcacgcatgaatgaagctcaggtctgtgtatcaaccacgaataggaacttccctggtcgaatgggacacaaggaaggccagatttatcttgcatctccgtatacagctgcagcatcagcattgaccggttatgtcactgatccccgagagtttttgcagtgaagttcctcgatgacctcgttttaggagtttggattatgttgtacactaacagatgagtgaatcttgagcttttgatgcttatatattcctgagaaaggccgcgctcgatgtgtttctcttttttctctttactcccaagaaatgaatgctcttctgcaataaaatgagaactccttgattcctaatttctgtcttctttgttgtattcttggagtcttattgttaaaagcattgaaataagaatttgtttctggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="1" stop="8830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="273" g_stop="373" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="117" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="374" i_stop="773" i_length="400">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="774" g_stop="908" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="252" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="909" i_stop="993" i_length="85">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="994" g_stop="1164" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="423" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1165" i_stop="1931" i_length="767">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1932" g_stop="2084" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="576" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2085" i_stop="2189" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2190" g_stop="2258" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="645" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2259" i_stop="2354" i_length="96">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2355" g_stop="2471" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="762" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2472" i_stop="3014" i_length="543">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3015" g_stop="3089" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="837" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3090" i_stop="3231" i_length="142">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3232" g_stop="3309" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="915" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3310" i_stop="3386" i_length="77">
            <donor d_prob="0.310" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="3387" g_stop="3482" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="916" r_stop="1011" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3656" g_stop="3705" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1012" r_stop="1061" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="4781" g_stop="4835" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1062" r_stop="1116" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="5107" g_stop="5238" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1117" r_stop="1248" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="6436" g_stop="6483" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1249" r_stop="1296" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="6583" g_stop="6741" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1297" r_stop="1455" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="8130" g_stop="8536" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1456" r_stop="1862" r_length="407" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U317587" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1846</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="273" e_stop="373"/>
          <exon e_start="774" e_stop="908"/>
          <exon e_start="994" e_stop="1164"/>
          <exon e_start="1932" e_stop="2084"/>
          <exon e_start="2190" e_stop="2258"/>
          <exon e_start="2355" e_stop="2471"/>
          <exon e_start="3015" e_stop="3089"/>
          <exon e_start="3232" e_stop="3309"/>
          <exon e_start="3387" e_stop="3482"/>
          <exon e_start="3656" e_stop="3705"/>
          <exon e_start="4781" e_stop="4835"/>
          <exon e_start="5107" e_stop="5238"/>
          <exon e_start="6436" e_stop="6483"/>
          <exon e_start="6583" e_stop="6741"/>
          <exon e_start="8130" e_stop="8536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTCTTCGACCCCTTAAGATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAGGTTTGTGTGTGTTTTATATGATTGAATTAAGATGCCCCTTTGATGCAAAATTAAGTTTTTTTTTCTTCTCATTATGAGTGAATTTACGCTGACCCTTTTGCTGATATGCTCTTATTTGCTGCAAAAATCAAGACTTTTCCCATTATTGAGGAGATTAATGCTAACCCTTTTGCTGATTTTCTCATATTTGCTGCAAATATTAAGATTTCTTCCGTTATGAGTGGATTTGCACTGACCCTTTTGCTGATTTTCTCAAATTTGCTGCAAAAGTCAAGATCTTTTTTCCGTTTTGAAGAAATTTGTGCTGACTCTTTTGCGGATTTTCTCATATTTATTGCAAAATTCAAGTTTTCTTCAGTTTTGAGGAGATCTGTGCTGACCCTTTTGCTGTTTTGTATAGAAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCAGTATGCATTTCCGATTGGTTTTTGTGCTCTTAATTGTAAAAAAAGGGGTTGACTCTTTTATCATGGTTTTTTTGATTGTTGTTAGGTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAGGTATATATGCTGCCAGTGGAATAACTTTCTTAGTGCAAATTGATTGTCTTGCTATTTTGGTTGAGTAAATTTGAATTTGCTTCGAGTACTTGAAAACTGATTCTTAGCTAGTGTTTGGCCATAGATATAGACATATAGTTGAAACTTGAAAAAAAGAGTTTTTGAAGTTTGTTGTTAGATAATTTTTGGAACTTGAAATTGTGTTTGGACATGCATTTTTATTAGTGCAAATTGATTGTCTTGCAATTTTGGCAGTGTAAATTTGATCTTGCTTTGAGTACTTGAAAACAGATTCTCAGCTAGCGTTTGGTCGTGCATGCATTGAACTTTGAAAAAATTGAAGTTTTGTGAGTGAAGGTGAAATTTCACCCTAAAATTGGTCTGGGCTAGTTTTTGGAACATGAAATTCTTCAAAAACTGACTAAATTTCATGGACAAACAATATTGAATCATTTTCTTTTTTTAAAAACAATCTACTCCCAGAATCTATGACCAAATGGGAGCTATTAGTTTGCTACTTTTCTTCATTACCTGGTTGTGTAGTAGCTATATGTACTGATTGAAGTTTCTTTAGTTCTCTGGTGGTCCGGTAATGGTGTTTATTAAATGTGGAAAATATGAACTAAAGACTGTTTCTCAAGCTCACACTTATTTTGTTGATTAGATGCTGAACTAAAGACTGTTTCTCAAGCTCGCGCTTATTTTGTTGATAGATGCATTATTCGGATGATATATCTAATGGATGTTTCCTTATTTCAATATCATAGGTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGTGTATGGCTATTTACCTCTAATAATGCCTTATTATGTGCTCTGCCGAAGCTGTTGCTTTCTTTGTCTGCTCATAGCAAATGAAAAAAACTAAATGATACTATACAGGCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAGGTGAATGAATAATCTTTGCCGAGATCCACACTGTCAAGACATTTTGATATGTATATGCATATGCTTTAACTTTATGAAGCCTATGTTTGTTGCCAGGTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTTGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAGGTAGCAATTCTTGTCTTTATGGGATACAGTTCTGGATTCACAGTTATGTTGTTTGATTTTATTGCCAATATGAAATTCCTAATTATATATCCCGAGAAGTTTTATCTACATTTTCTACTGTTGCATATAGGCGTAACTCACTCTCTTTTTTGGTGTCCCTTACCAAAGAATTAACCTTTTTTAGATAACAGATGACAGTGCTAAGCTAAAGACTTACAATAGTAAATTATAAGCTCATAAGGCATGTCACTGAGCTTGTTCTCCTTTGCATCTCACAAGATGAACGAGAACAAGTAACCATAGCATTCTTCTTAAACACGTTTCAATGCATTTAAAAGGAGGAAAAACAATATGCAGCAAAAAATGTATTAAAGAAACATGATGTAGACTTCTTCATTTTCTATTTGAAGATTGAAGATTGAAGAATGAACAAGAACTGACAGTCACACGTGTCTCTTCGACATTTTGTATTTTTTGTGGTTAAATAACTTCTCTTTCTGCAAATGTATATCATCTACGAAATTTAATATTTGTATGATGCAGGTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAAGTAAGTTTTGCTAGATGCTCTATTCTTCATTTTTGTGTGTTGATATGATTTGTTACGTCTGTTATTCTGTTTCTTTATAACGTTGTTGGATTGATAAGAATCCAAAGTTCAAATTCTTGTCCTTTGCTTTTGAAAATTGCAGATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACTGTAAGTTTTTTTGACATTGTTAGTGGGATTAACGAGGTTGGATCCTCAAGTAATTATGGATCTTATTGTTTTAATAGATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAGGTAAGTGAGGAAGCTGGGGACTCAATTTCACCTCTTTAAACTTTTCCACCTCCCTTGTGAGAGGTCAATTTCATCTGAAACATGCTGCCAAAAAGACCTTATAACTTTATATTCAGGATGACTGAAAAAAGAACCGTATTCAGCTGATGAATTTTTATTTTCTGCTGTCACAGGGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAGGTATTGAACGCTAGAGACCATTGTTGCGATGTCACCAATTGATGCCATATTATTCTAGTTTGCAGTTGTCATGTCTCAGATTGAATTGCTTATTCCTTTGTTGGTACATATTTGCTTTATGTTACTTTGAGCACTCCATATGTGGCCAAAGTTAGATGGTTATAACTGATCATTCAAGGTATCAGATAAAAATTAATTTTCCAGAAGTATTTGTTTTTAAAAAGGTATATGAGATGAGATCAAATAGAATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTTCTCTTCTCGTTTCATGAAAAGAGTATATTAGGTTATCATTTGTGCGTTCAAATTGCCATGTCTTCAACATTAACACGTCGTTTTTTTGTATACCCAGATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAGGTTGGTTATGTTTTAGCTTTCTTTCTTTGGGGATTCATCAATGGTATTAACAGTGTTTTAGTTGTGTGTGTGTAACTCATACGGCAGAAAAAATTGAACTTAAAATTTTATATTATCAAACAATCAAGAATGCTAGTGCAACTGTCGTTGCAGATATTTAAGATATTCTGTATTGTTTAATATTCTGGTTTTATTTTCTCTGGAGATGGATTTCTACTCATTCTAAATACTACCCGTTCCAAATGTTCTAAACCTCCTGTGCCTCCTGCAGCCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCCGTAAGATTACTCCAATAAACCAATAATTACTCATTTTTACGATTTTTATATCAGTTTAGACTACATCGGTGTTATGTGGACTTTGCTATGAGTGTGGGATGCAATTTCTTTTGACAGGGGGATGTTTAGTTTCTAAAATTTAATCCTGAAGGAACCGTATGTAGTAGCCATATCCTTGTTATGCTCATTTGATGAGTACATCAAGGCGGTTGAAAGGTCTTCACAATGTGGAATTTATAGCCATTAACAAAAATGTTTCTTAAAATAGAATTCACAATTAATGGCCTAAACTGCTTCTAGATGACTGCAGTATGCTATAAATTATGACCAACAGTCTTGAATAATGGTTTGCTTCCATTTGGGAGAAACTGGAAACTTATATCGATGCATGTTGTAATCAGTCAATTGTTTAGTAATATCTCACAGTTTTACCTGTTTTCTCTATGAGCTATGATCTCTCTCAATCAATGTTGACTTAACTAAGAACAAAATACAGTAGGTCAATGTAGCCAATATCAACTAGGCATGATTAAGACTTAAATGCTATTGTATTTAAATTAGGTTTTCTGTTTGTGAGGAGTCCTTTTTTCTTGGTTAGACTTTTTTATGGCCATGTAGGCATAAATGGTTAAGACAACTTTTTATTGCTTGAATGAAATTGGCTTGAATAGAGTGGAACAAATATGGAGGATTAATATAACCAATTGCATCTAGTTTGGAATCGATGCTTAGATATTCGATTGATTTGACTTTACACCCTCACCATTTATCCACTTTGTCGTCTGCATTGACTCAATAGTTGAGGTGCATGATGTAATGCCGATTTCCACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTAACATTAGGCCACTTGTCTTTTCTGCAAGTCTATGTTCTCTTCTGTAGATTTGTTCTTGTCCTATATTGGCTGATTACTATATATGTGTGCAGTGATGCTCCACTATGTTTCACAATTATCTCACACTATTATGCTTAATTTCTCACTTTTTATGGCAATTTTTCCTTGTTCATTTTTGCTCCCACACCTGCAGGGAGAGGAAATACTTGCTCATTTTTCATGATTAAAGTCTTCCAGATGTTAGATATTTCAGGTTTAAACGAATGACCATGTCTTATGCAGGGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAGGTTCGTAATCTTATTTTTTATCCTAGGACTTTGTTGGTATCTTAGCTGCGATATCATTGCAGAAGTAACCATATGATGTAAATATTGAAACTGTTTCAGGTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAGGCAAGTTGTTGGTTGTTTCATATGAGTTGTTAAGTTGCCATTAATATGCTAGGGACATTTGGCTTTGACTATACATCATTGGGTTGTTTGTGACAAACAGGATATTTCATAGCGAAATTTTCCTTGAGCAGGAATAACTTAGTTCAATCTTATACCACGTAGTTGAATATTTATTTGGTTCACCACACATTGGACACCTCACAAGCTGGAAAGCATTGCTAGTTTATAGTGGTGACATCGTTTAACATGGCATTAATTCAGACTATTTATTGCTTTACCCTCCTTCCAGATTATTGACCTGGTTTTAGTGAAGGACTTGCATATCTAAGTTAAATTAGCATCCGTAACCGGTAGTGTACAATGCTGATCCTTAGATCTGTTAGGTGCGTTGTTGGTTGATTATTCTTTACGCGTTTTAGTCATTGTTGGGAGGTTGTTGGCGGGTTAGTAAATTTTTGAAGCGTTTTCCATGTTTCTTCTTTTTGTTTTTTGTTTCCTTTTCCATTCTCGGTTTCTTACTGAATGCTTAAGCCTTAACATCCACACAATTCTTATAGATATTTGCTTGCTATTTTCATTCTCCTTTGGCGCGGGCTCTAGAACCTAGGTTCTCTAGATGCAAAACCTTTCAGTCCACGATGATTTGTTTTTACTTGAGAGCTTTTTTCAAAACCGATATAGTGAACAGATATCATCATTTCAGTTTGGTTTTTCTGGTTTTGGAGAGCCATAAAATAGATTCTCGACGTGAATCCAACTTTTCTGTCCAAGACAATTTTTTCACTGGAGGTTTTCTTTAATCTAAATATAGTGGGCAAATGTTATCACGTCACTTTTACCTTTCTGGTTTGGGTCTTATAAATTCGAATACCAGGATGACCTCCTGTTGTTTTGAGTTAATGGTAAAAGCACACCTAAGCTATCATTTTTTTGCAATTTTTACTTTTCCAACTATCCGTTGTTTCTTTTACCCACCTAAACTATCACTCCCTTGTATTAGAACACTCCTCAATAGTGACTTGGCCAAATATTGTTCCCACTCAACAGCAGGCTCGTGTAGGCCAACTCAGCATTGAGGTGTGTTTTTAATTCAAAAAGAGTGATAGTTTAGACGAAGGTAAATGGAACAATGGATAGTTGAGGTATAAAACCTCATGAACATGTGATAGTTTAGGTGTGTTTTCGAGAGAATTCAACCTTGAAATTAACATAATCGTAAAGGGAATAGGGGACGGTCTCAGAACAAGAAACATACCAGCATTATCTGAATTTTGCATAAACTGCCTTTCTATTTTCCGAGTTCAGGCAGCCCTAAAATTGTTGGAAGGAGTCAAACTTGTCATGGCAATGTAGGTCGTTACCTAACTCTATGAATGATTGTCTTGCAGGTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAGCATTGAAATAAGAATTTGTTTCTGGAAATAATTACTC</genome_strand>
        <mrna_strand>TTCTTCTTCTCTTCTACCCCTTAAGATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAG................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCA.....................................................................................GTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGT.........................................................................................................GCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAG................................................................................................GTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTCGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAA..............................................................................................................................................ATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACT.............................................................................ATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAG.............................................................................................................................................................................GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG...............................................................................................................................................................................................................................................................................CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG...................................................................................................GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGCCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCAATAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAGCATTGAAATAAGAATTTGTTTCTGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339583" ref_strand="+" ref_description="SGN-U339583        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atagaccaaagttttctaaagatatcagtatatgttcaagtccaagaacaaggttgaacgaagtgggaaattagttgatgagaaaaatttgttctactataagctttgtagaaataatttccacatatcctggagaatgcggtgacacattttgccaaaactagatgcctttcttgccatcattttcttgtactgaaaaataattatttgtccaaagtaaatgaattgaaggaaggactagatgtcctgaaaattgtcaatatcagaaaatattattagagtgcaattattagctattcctttctggttaggcgatagaatcttgttatgaggttcattatgtgactcaataatggaaatctggcccatgatgaacgtctgaatagtttgttcttttagatgaattttttgtacttcagtgcttcctgcttgtaatgaattcttaactgatgaacattgggagattgtttgcttaaaggattgtaattttttccagcaaggtgttttagtggccgtggaacatttgtatttggatagagctaactgcagaagggtctgagattggtttcttttcaagatctttggggatgtagaagtcttttagtaaagcaatagcctcctttcatgatatcgacgttttctatatccacccagattatagggttttatttatttgatgcagctctttcataaggttgtgcacttgtagtcatcttcccatataccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="3654" stop="4983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3954" g_stop="4683" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U339583" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3954" e_stop="4683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTT-GGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTT-CCATATAACCTTCTT</genome_strand>
        <mrna_strand>ATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATGGAAATCTGGCCCATGATGAACGTCTGAATAGTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGACGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCCATAT-ACCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339582" ref_strand="+" ref_description="SGN-U339582        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ccagagttttgtaaggatatcagtgtatgttcaagtccaggaacaaggttgaaccaattggcaaattaggtgatgagacaaattgggcctactatccgcttggttgaaataatttccacatatcctggagaatgcggtgacacattttgccaaaactagatgcctttcttgccatcattttcttgtactgaaaaataattatttgtccaaagtaaatgaattgaaggaaggactagatgtcctgaaaattgtcaatatcagaaaatattattagagtgcaattattagctattcctttctggttaggcgatagaatcttgttatgaggttcattatgtgactcaataatggaaatctggcccatgatgaacgtctgaatagtttgttcttttagatgaattttttgtacttcagtgcttcctgcttgtaatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="3659" stop="4694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3959" g_stop="4394" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U339582" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3959" e_stop="4394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATT</genome_strand>
        <mrna_strand>CCAGAGTTTTGTAAGGATATCAGTGTATGTTCAAGTCCAGGAACAAGGTTGAACCAATTGGCAAATTAGGTGATGAGACAAATTGGGCCTACTATCCGCTTGGTTGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATGGAAATCTGGCCCATGATGAACGTCTGAATAGTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320328" ref_strand="+" ref_description="SGN-U320328        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | C2 domain-containing protein, low similarity to cold-regulated gene SRC2 (Glycine max) GI:2055230; contains Pfam profile PF00168: C2 domain | chr1:1237255-1239060 FORWARD | Aliases: T1G11.21, T1G11_21(evalue: 8e-07, score=50.1) genbank/nr: gi|15219742|ref|NP_171948.1| C2 domain-containing protein [Arabidopsis thaliana](evalue: 4e-05, score=50.1)">
      <seq>tttagttgaaagaggatatctaatggatgacaagaggagctcagtgttggatggttggagcatcgacgagagcaccgaggggctcaggtcgaagctcgagaggtggaggaacgagatccctccggtacaaaacggagggacaggttcaagtagctatcgttcgaccggacatcaccctagaaggcgttcgagtggagggagtagcttgttttcttgctttggtaatatttgtggctatgaatgtcaatgtatgtgtgggaagcccaaaaagaaaagtgttagtaacaaaaagtatagaagcccatcaactgctagcagatcatggttttgaaagcccaagcccaattagatttgtaaggcccaattgcaagaagaagaatattgaggaattagggggtctttttgtttaggtctctcttttcattattattttttatttacaatattgtaattactattctatctgattattttttttagttctcaaaactatgtgcattgttatcaatttgtaattggtaatatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="9753" stop="8623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9453" g_stop="8923" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U320328" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9453" e_stop="8923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTGAAAGAGGATATCTATTGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACCGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACGTCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAAAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGA--T-T-AGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTATTATTCTATCTGATTCCATTATTTTTTTTAGTTCTCAAAACTATGTACATTGTTATCAATTTGTAATTGGTAATATGTCTT</genome_strand>
        <mrna_strand>TTTAGTTGAAAGAGGATATCTAATGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACGGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACATCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAGAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGATTTGTAAGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTACTATTCTATCTG-----ATTATTTTTTTTAGTTCTCAAAACTATGTGCATTGTTATCAATTTGTAATTGGTAATATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329656" ref_strand="+" ref_description="SGN-U329656        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:30145855-30147538 REVERSE | Aliases: F18B13.21, F18B13_21(evalue: 6e-24, score=108) genbank/nr: Tetratricopeptide-like(evalue: 2e-32, score=142)">
      <seq>ctataagagtatgattcaagaaaatccaaataatcccttagttttaagaaactatgctcagttccttgatcagtgtaaaggggacttgagaggagctgaagaatactactcgcgcgcggtattgacagatgctagtgatggagaaattatttcacaatatgcaaattttatatggcatcttcatcatgaccaaaataaagcctcttcttatttcaaaagagcagttcaagcttctccaggaaactgcgatgtactagcatcatatgctaggtttttatgggaaacagaggaagacgaagatgaagatgaagataaagacgaagagtcaaataatcacaaatatcaatttcaatattttcatggagtaatggttactccaaatgcttaatcccccaataccaagtaaaatgagtggtcagaggggattacatggtgggaaatcgaattctcactaataaggtgaaagttcaaatagttaatcagctgaactaataagatttcctgtttccatatagataaataatagttccaataggatttttttccttccaaaaaccgttgtcatatatagagataatctatagctacggtttttttggtacaatttcaacgattgaattgctaaagtgtattagcaatacttaaatagttggaatatagtgttcatagcaacggttgtatagccatagcaaaaaaataccgttgtcataggtctagtttctagtagtgtcatttcgaaataacttcagacatgacgtttgatattaagctgttgataaaactgtctgaattacgtaagtctgaattgatcagactaaaatgactaaggtttaataaaaaaaatgttgattcacgatgtaaattttgatgttgctaacaagcaaatttgaattataattttatgagggaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="14434" stop="126186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14734" g_stop="14806" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14807" i_stop="14996" i_length="190">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14997" g_stop="15169" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="246" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15170" i_stop="15640" i_length="471">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15641" g_stop="16299" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="909" r_length="663" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16300" i_stop="16915" i_length="616">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16916" g_stop="16942" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="910" r_stop="936" r_length="27" r_score="0.741"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U329656" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14734" e_stop="14806"/>
          <exon e_start="14997" e_stop="15169"/>
          <exon e_start="15641" e_stop="16299"/>
          <exon e_start="16916" e_stop="16942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAAGAGTGTGATTCAAGAAAATCCAAATAACCCCTTAGTTTTAAGAAAGTATGCTCAGTTCCTTGATCAGGTAATGTCCCTTATTTGTCATCTAAGCTACCGCGTATAAGCAGTAGCATAGCAACATATAGTGAAAGGTAGTCAATTGAACACTCTTGACTTCTTTTGCATAAATACACTCAACCTTTCCCAAAACTCCACTTGTCAGATCACGTTGGATATGTTGTTATCATTAGCGTGCTTATCATTTTTTCGTGCAGTGTAAAGGGGACTTGGGAGGAGCTAAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTCATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTGGTAAGTGTTACTCTCTTCTGTCTCATTTTATGTGAAAGTGTTTGATAAGGCACGAACTTTAAGAAAGAAAGAAACTTATAGTCTAACACAAGCTATAAACATTTAATCGACTATAAATCATCTCATTAACAGAGAAAAAAGGAATGTTTATAATGATAACACCACATGATGGTTAAGAAATAAGGATTTATATATATGTACGTCAGTAAACGTTTCCTTCTTCATTGTCGTTTTTTCTCCTTTCATACCTACTTTGATTTGCTATACTCGAGCACAGGGTTTTCCAGAAACAACCTCTCTAACTCCACGAGATAAAGTAAAATCTGTGTACACACTATCCTCCCAAACTCCACTTGTGGGATTTCACTGGAACTATTGTTGTAGTAAAGGACTTTTGCATTGACACCATATTTTGACTTGTTTCTTACCATATTAGTACTACCATATTCATTACATTTATTTTGTTTTCAGCGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGATAAAGAGTCAAATAATTACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGAATTACATGGTGGGAAATCGAACTCTCACTAATAAGGTGAAAGTTTAAATAGTTAATCAGCCGAACTATTAAGATTTTCCGTTTCCATATAGATAAATAATAGTTCCAATAGTATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTATGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTA-TAGCTATACTTAAATCGTTGGAATATAGTGTTCATAGCAAC-G--GT-TAGCCGTAGCAAAAAAATACCATTGTCATAGGTCTAATTTCTAGTAGTGTCATTTTAAAATAACTTCAGACATGACGTTTAATATTAAGCTGTTGATAAAACTGTCTGCTGAGTTATGTAAGTCTGAATTGATCAGACTAAAATGACTAAGGTTT-A-AGAAAAAATGTTGATTCACAATGTAAATTTTGATGTTGCTAACAAGCAAATTTGAATTATAATTTTATGAGGTGATGATTTTGTGTTTATTATTGTTAAAGAGATTGTAGGAAATTTTTCGTACACTTAAATTTATTTTTCGCATAAAATTTATTGTCTAAATTGTAATTTGAAAAAAAATTAACATTTTTTAATTAATATTTTCATAGAAGATGTGACCGAAAAACATGATAAATAATTAAGATAAATAAGGTATTAGTATTTAAGAAAAAAACTTTTTGATAAAAAAAATTTAGCTAGAATTTGATCAAAATGATATTTTATTTATATTATTTTATTTTTTTAATATATATTTTTAATATTTTTAACTTAAATACATTTTAATAAAAAAATATTTAATTAAGGGTTACCTCATATTCATAATTGAATTTATTGGAATTTGGGTGCTGCCCAAGTTAAAAAAACAACTTCTTTATATGTAAAATTTATTATTCACTCCATTCACTTTTAAGGAAAAATAATTACTGTTTTTTTCTTAATTTACCTTCTATATTAAATACTTAATTTCAAATTATTTTTTTATATTTAAAAATATATATCAATTAATAAATGAATTATAGTTAAATAATAATATTAACCATTATATTTTAAGAGACATGCTCAAAATAAACATATAATAAAACCTTTCTTAAAAGACATATATAAAAAAAAATGAAT</genome_strand>
        <mrna_strand>CTATAAGAGTATGATTCAAGAAAATCCAAATAATCCCTTAGTTTTAAGAAACTATGCTCAGTTCCTTGATCAG..............................................................................................................................................................................................TGTAAAGGGGACTTGAGAGGAGCTGAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTTATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGACGAAGAGTCAAATAATCACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGGATTACATGGTGGGAAATCGAATTCTCACTAATAAGGTGAAAGTTCAAATAGTTAATCAGCTGAACTAATAAGATTTCCTGTTTCCATATAGATAAATAATAGTTCCAATAGGATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTACGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTATTAGCAATACTTAAATAGTTGGAATATAGTGTTCATAGCAACGGTTGTATAGCCATAGCAAAAAAATACCGTTGTCATAGGTCTAGTTTCTAGTAGTGTCATTTCGAAATAACTTCAGACATGACGTTTGATATTAAGCTGTTGATAAAACTG--T-CTGAATTACGTAAGTCTGAATTGATCAGACTAAAATGACTAAGGTTTAATAAAAAAAATGTTGATTCACGATGTAAATTTTGATGTTGCTAACAAGCAAATTTGAATTATAATTTTATGAGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341962" ref_strand="+" ref_description="SGN-U341962        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 33 kDa secretory protein-related, contains Pfam PF01657: Domain of unknown function, duplicated in 33 KDa secretory proteins | chr1:1231577-1234005 FORWARD | Aliases: F19P19.1, F19P19_1(evalue: 3e-61, score=231) genbank/nr: F19P19.1(evalue: 2e-59, score=231)">
      <seq>ttcattcacattttcacatttcaaaaactcaagcttgaaatctttataaaaaaaataaataaatacaaaacaacaatggaataatccatcaagaatccacaaaatgagtatggcatcaaagccattttgcatattctctcttttcttagttatatttaccatattcaagctaaccccacaagctaaatctgattctgattatactaagttgatttacaagggttgtgcaaagcaagatttatcagatccatctggggtttactcacaagctctttcttccctttttggcactcttgtttcacagtcctcaaagtctaagttctataagactagtactggtagtgggcaatctacaatttctggtctttttcagtgtagaggtgacctttctaatgttgattgttataaatgtgttagtggtttgccaatactcatagataagttatgtggaagtaagcctgttgctgcaagaatccagctttatggctgttacatgctctatgaggttgctggtttccctcaaatctctggaatggagatgctgttcaagacttgtagtgggaaaaatgctccaggtagtgggtttgaggaaagaagagatactgcttttttcacattggaaaatggcatggctagtagcaatggcttctacacgacaagctatcagtctgtttataccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="25484" stop="23170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25184" g_stop="24610" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24609" i_stop="23576" i_length="1034">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23575" g_stop="23470" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="681" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U341962" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25184" e_stop="24610"/>
          <exon e_start="23575" e_stop="23470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCACATTTTCACATTTCAAAAACTCAAGCTTGAAATCTTTATAAAAAAAATAAATAAATACAAAACAACAATGGAATAATCCATCAAGAATCCACAAAATGAGTATGGCATCAAAGCCATTTTGCATATTCTCTCTTTTCTTAGTTATATTTACCATATTCAAGCTAACCCCACAAGCTAAATCTGATTCTGATTATACTAAGTTGATTTACAAGGGTTGTGCAAAGCAAGATTTATCAGATCCATCTGGGGTTTACTCACAAGCTCTTTCTTCCCTTTTTGGCACTCTTGTTTCACAGTCCTCAAAGTCTAAGTTCTATAAGACTAGTACTGGTAGTGGGCAATCTACAATTTCTGGTCTTTTTCAGTGTAGAGGTGACCTTTCTAATGTTGATTGTTATAAATGTGTTAGTGGTTTGCCAATACTCATAGATAAGTTATGTGGAAGTAAGCCTGTTGCTGCAAGAATCCAGCTTTATGGCTGTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTTCAAGACTTGTAGTGGGAAAAATGCTCCAGGTAGCTTAGGAGGATTCAAGATTTAAACTTTACTAGTTCTATTTCAAATATTTTGAATTTTTAGTGTTTCTTGCATATATAGTTACACTCTGTGTTGATAGGTTCACTCTTTAGAACTGGTAGTGGGAAGTCCACGGTATCTGGTCTTTTTCAGTGTAGAGGTGACCTGTGCTTTAAATGTCAGTGGCTTGCCAATACTCATTGATAAGCTGTGTGGTAGCAAGCCCTGTTGCTTCAAGAATCCAGCTTTTTGGCTGTTACATGCTCATCTCTGGAATGGAGATGCAGTATAAGACTTGTACTGGGGAAAATGCTCCTGGTAGCATAGGCGGATTCAAGATTTAAACTTTACTAGTTCAATTTTAACTTTTTTGATGTTGTTTGAATTTTTAGTGTTTCTTTGCATATATAGTTTTACTCTGTGTCAAAGACGGATTCAGAATTTGGAGTTTATAGATCCGCTCTTCAGTACTGGTAGTGGGCAGTCCATAATTCATGGTCTTTTCAGTGTGGAGATGACCACTCTAGTGTTGACTGCTCTAAATGTGTTAGTGGTTTGCCAATACTCATTGATAAGCTACATGGTAGCAATCCTATTGTTGCAAGAATCCAGCTTTATGGCTTTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTACAAGACTTATAGTGGGTAAAATGCTTCAGGCAGCATAGACAGATTCAAGAATTAAATTTTACGTGTTCAAATTGTTAGGTTTTAACCGCTCAACCGGTTGCGCATTTCAAATGTGGGTTACAAATTTAGTATTTCTTGAATTTCTAGTGATTTTGTTACGTATATTTATGTTCTGTCTCGAAAATTTTGGTTTTGGTCTTACATGTTACTTATAGCTACATACAGAATTTAAGTTTTATATGTTCAATTTTTAGTATATACCACCATAGCCATTACATTTTTCAAAATTACACGTTCAAGACTTGTATTTCTTTCATATATATATTTAGAACCCGTGTCGAAAATATTATCAGGTAGTGGGTTTGAGGAAAGAAGAGATACTGCTTTTTCCACATTGGAAAATGGCATGGCTAGTAGCAATGGCTTCTACACGACAAGCTATCAGTCTGTTTATACCAT</genome_strand>
        <mrna_strand>TTCATTCACATTTTCACATTTCAAAAACTCAAGCTTGAAATCTTTATAAAAAAAATAAATAAATACAAAACAACAATGGAATAATCCATCAAGAATCCACAAAATGAGTATGGCATCAAAGCCATTTTGCATATTCTCTCTTTTCTTAGTTATATTTACCATATTCAAGCTAACCCCACAAGCTAAATCTGATTCTGATTATACTAAGTTGATTTACAAGGGTTGTGCAAAGCAAGATTTATCAGATCCATCTGGGGTTTACTCACAAGCTCTTTCTTCCCTTTTTGGCACTCTTGTTTCACAGTCCTCAAAGTCTAAGTTCTATAAGACTAGTACTGGTAGTGGGCAATCTACAATTTCTGGTCTTTTTCAGTGTAGAGGTGACCTTTCTAATGTTGATTGTTATAAATGTGTTAGTGGTTTGCCAATACTCATAGATAAGTTATGTGGAAGTAAGCCTGTTGCTGCAAGAATCCAGCTTTATGGCTGTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTTCAAGACTTGTAGTGGGAAAAATGCTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGTTTGAGGAAAGAAGAGATACTGCTTTTTTCACATTGGAAAATGGCATGGCTAGTAGCAATGGCTTCTACACGACAAGCTATCAGTCTGTTTATACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325243" ref_strand="+" ref_description="SGN-U325243        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>tgctaacggtggatctgctgctggccagtctccaactggagccacaggatatggaaatcaaggttatggctatggtggatatggcggaaatgatgggtcttatggaggtggtgcatcgggagatatgcaatcaggtggaggttacatgggcagtggctatggcgatgctagtggaaattcacaaggttctggtaattatggtgctcagcaaaatggaccttatggtggtggtgccccaagtcggcaggctcaacaacactgatcatagtggtcaatttcatccgagaagtcacctagtaacgtagcagaggatttcacgcaactgatttcgttccacagacagtttcctcttgctgttcttgcaagcgtaaagcgcttaatgggattgctttaatttttgtagtttgcagttcttatttctagtttacaacaagtaattgtcagtcttatttccctgttttgtcatattttatgttttactgtagttttaatttggcttgcttatggttgaggttcgtttaatagttagttttacccttggtgatactatctcatcgccattactaaacttccttagttggatggaaaactccaaatangataatgaaagtggaaaatacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="32187" stop="33411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32487" g_stop="33111" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U325243" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32487" e_stop="33111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAGTTAGTTTTACCCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGGAAAACTCCAAATAGGATAATGAAAGTGGAAAATACAACTC</genome_strand>
        <mrna_strand>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAGTTAGTTTTACCCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGGAAAACTCCAAATANGATAATGAAAGTGGAAAATACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345188" ref_strand="+" ref_description="SGN-U345188        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G58848.2 | Symbol: None | similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:At1g58602.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:At1g58390.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:At1g58410.1); similar to disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative [Arabidopsis thaliana] (TAIR:At1g59124.1); similar to disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative [Arabidopsis thaliana] (TAIR:At1g58807.1); similar to RP8HA_ARATH Disease resistance protein RPH8A (RPP8 homolog A) (GB:P59584); contains InterPro domain NB-ARC domain (InterPro:IPR002182); contains InterPro domain Disease resistance protein (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat (InterPro:IPR001611) | chr1:21795448-21800115 FORWARD | Aliases: None (evalue: 6e-25, score=111) genbank/nr: gi|15218003|ref|NP_176153.1| disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] gi|29839441|sp|Q94HW3|RDL6_ARATH Probable disease resistance RDL6 (RF9/RXW15) gi|14475935|gb|AAK62782.1| resistance protein RPP13, putative [Arabidopsis thaliana] gi|18265372|dbj|BAB84014.1| disease resistance protein [Arabidopsis thaliana](evalue: 4e-23, score=111)">
      <seq>aacaagttacaatattcctagataaaagtagtttgaggtatcagattcttgtttgttttttttcaagcaatactgcgtggaactgttgaatgctgttgatatcaagtttctggcagttgtcgatttctatgttggaaagtataggcatggctgtattttccacatggattctctgcagctcggacaaattgaggagttgtaagcatttgagctgagggaaacctgaagctgaacagaccatatccttccccatataggcatcatcattgaggcctagaatccctaaactaggaagcttctccaagattggcatggggtcttgtttaagacaagacttatgaagacgtaactgagtgagattcggggagattttaggagatggtaataggggtccaataaatcctttgaatttcaaggtttggagtacttcacaacctaagaattcttctagtacagtactacgttcgggtgcagagcaattcaaatctatgatgtcaatggagcaatgtagcggacatttgtttgaagtcaggtaactggtgattgattcaaagtcggggaaattattttncacctttgcctccaggtaatggagtttacaaagtgttgagacatcattagctctgcacaagctcgtgttgaagttcaccaaggtttcaagttgtgtcaagctattgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="33665" stop="34928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33948" g_stop="34628" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U345188" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33948" e_stop="34628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTTACAATAGGACTAGATAAAAATTGTTTGAGGTATCAGATTCTTGTTTGTTTTTTTTCAAGCAATACTGCGTGGAACTGTTGAATGCTGTTGATATCAAGTTTCTGGCAGTTGTCGATTTCTATGTTGGAAAGTATAGGCATGGCTGTATTTTCCACATGGATTCTCTGCAGCTCGGACAAATTGAGGAGTTGTAAGCATTTGAGCTGAGGGAAACCTGAAGCTGAACAGACCATATCCTTCCCCATATAGGCATCATCATTGAGGCCTAGAATCCCTAAACTAGGAAGCTTCTCCAAGATTGGCATGGGGTCTTGTTTAAGACAAGACTTATGAAGACGTAACTGAGTGAGATTCGGGGAGATTTTAGGAGATGGTAATAGGGGTCCAATAAATCCTTTGAATTTCAAGGTTTGGAGTACTTCACAACCTAAGAATTCTTCTAGTACAGTACTACGTTCGGGTGCAGAGCAATTCAAATCTATGATGTCAATGGAGCAATGTAGTGGACATTTGTTTGAAGTCAGGTAACTGGTGATTGATTCAAAGTCGGGGAAATTATTTTCAACCTTTGCCTCCAGGTAATGGAGTTTACAAAGTGTTGAGACATCATTAGCTCTGCACAAGCTCGTGTTGAAGTTCACCAAGGTTTCAAGTTGTGTCAAGCTATTGAGTC</genome_strand>
        <mrna_strand>AACAAGTTACAATATTCCTAGATAAAAGTAGTTTGAGGTATCAGATTCTTGTTTGTTTTTTTTCAAGCAATACTGCGTGGAACTGTTGAATGCTGTTGATATCAAGTTTCTGGCAGTTGTCGATTTCTATGTTGGAAAGTATAGGCATGGCTGTATTTTCCACATGGATTCTCTGCAGCTCGGACAAATTGAGGAGTTGTAAGCATTTGAGCTGAGGGAAACCTGAAGCTGAACAGACCATATCCTTCCCCATATAGGCATCATCATTGAGGCCTAGAATCCCTAAACTAGGAAGCTTCTCCAAGATTGGCATGGGGTCTTGTTTAAGACAAGACTTATGAAGACGTAACTGAGTGAGATTCGGGGAGATTTTAGGAGATGGTAATAGGGGTCCAATAAATCCTTTGAATTTCAAGGTTTGGAGTACTTCACAACCTAAGAATTCTTCTAGTACAGTACTACGTTCGGGTGCAGAGCAATTCAAATCTATGATGTCAATGGAGCAATGTAGCGGACATTTGTTTGAAGTCAGGTAACTGGTGATTGATTCAAAGTCGGGGAAATTATTTTNCACCTTTGCCTCCAGGTAATGGAGTTTACAAAGTGTTGAGACATCATTAGCTCTGCACAAGCTCGTGTTGAAGTTCACCAAGGTTTCAAGTTGTGTCAAGCTATTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333195" ref_strand="+" ref_description="SGN-U333195        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G35450.1 | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr5:13685039-13688335 FORWARD | Aliases: MOK9.3, MOK9_3 (evalue: 1e-12, score=70.1) genbank/nr: gi|15238507|ref|NP_198395.1| disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] gi|29839623|sp|Q9FJB5|R8L3_ARATH Probable disease resistance RPP8-like protein 3 gi|9758146|dbj|BAB08703.1| disease resistance protein [Arabidopsis thaliana](evalue: 9e-11, score=70.1)">
      <seq>ttgtaactacccgagttgaatatgtagcgaaatacatatcaaaaaaacacagtcagcctgtatataacatgaagtccttgaacgagggtgatagttggagattgttcgacatggtgttatctcacagtcacagggcatcatcatcagatagggaaatggttagatgttgttatgggttaccagggctcatcaagcaccttgcatcgtataaaacaagtgatcaatcatttatctctgaatactattgtctactttataaacaagagttaccaaaggaattgcaaccatgctttatttacttaggtcatttcctagaaaatcaattgatagatccagaaaagttgtcccatttatggatgatcgaagggttattatcaacaagacaaagtgttgttaaagggcatcagagcatgactgagagatatctgaaagaactagaacgtatgggcgtggtagagctgcaaccagaggaagttccaacgaccaacaaattattcaaggcttatcgctttgttncaggtatggaaaaattttgcgtctcaaattgtgaagaaaaatgttttctcaaaatcattgatttaagacgagaaaactgttcactctcatcgagtgacagaccacgtcgacttgtgatatatctaggtaatcgcacagttgagattcctcctaaagttttctaaactattcttagtcttagagtgggtcttcttggaaatcagcacacccctactgaaatgctaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="36090" stop="34623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35790" g_stop="35644" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35643" i_stop="35520" i_length="124">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35519" g_stop="34923" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="744" r_length="597" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U333195" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35790" e_stop="35644"/>
          <exon e_start="35519" e_stop="34923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAACTACCCGAGTTGAATATGTAGCGAAATACATATCAAAAAAACACAGTCAGCCTGTACATAACATGAATTCCTTGAACGAGGATGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAGGTCAGTTAATTTAATTCTACTCTGCTTTTGTTTTAAAAGTGCCACTAAGTGATACTTATTTGAAAAATAATAATAGTAGATCCTCTCATATGATATGTCTAATACAGTATCTAACTCTGTGCAGATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCATCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTAGAACGTATGGGCGTGGTAGAGCTGCAACCAGAGGAAGTTCCAACGACCAACAAATTATTCAAGGCTTATCGCTTTGTTCAAGGTATGGAAAAATTTTGTGTCTCAAATTGTGAAGAAAAATGTTTTCTCAAAATCATTGATTTAAGACGAGAAAACTGTTCACTCTCATCGAGTGACAGACCACGTCGACTTGTGATATATCTAGGTAATCGCACAGTTGAGATTCCTCCTAAAGTTTCTAAAACTATTCTTAGTCTTAGAGTGGTTCTTCTTGGAAACCAGCACACCCCTACTGAAATGCTAAACC</genome_strand>
        <mrna_strand>TTGTAACTACCCGAGTTGAATATGTAGCGAAATACATATCAAAAAAACACAGTCAGCCTGTATATAACATGAAGTCCTTGAACGAGGGTGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAG............................................................................................................................ATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCACCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTAGAACGTATGGGCGTGGTAGAGCTGCAACCAGAGGAAGTTCCAACGACCAACAAATTATTCAAGGCTTATCGCTTTGTTNCAGGTATGGAAAAATTTTGCGTCTCAAATTGTGAAGAAAAATGTTTTCTCAAAATCATTGATTTAAGACGAGAAAACTGTTCACTCTCATCGAGTGACAGACCACGTCGACTTGTGATATATCTAGGTAATCGCACAGTTGAGATTCCTCCTAAAGTTTTCTAAACTATTCTTAGTCTTAGAGTGGGTCTTCTTGGAAATCAGCACACCCCTACTGAAATGCTAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345745" ref_strand="+" ref_description="SGN-U345745        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|48057628|gb|AAT39951.1| putative disease resistance protein Prf [Solanum demissum] (evalue: 3e-14, score=82)">
      <seq>tttttttttttacataagaaacataattttttttatatatatatataaagaaaaagaaagagcacactaatcccaatcacaaaatgacaaaaccaaaggagaatataggcacaccaattcagttgcagatatagaaagttgagagccaaaagaaggggtgcaaggaggacataaacacgacgacattcagttgacaaaagaaagtagtaactggctgacctctgaagagatttgattagttgcaatgagagttatgtatcgggcgggaaaatggttagcttgaatccagtacatacactttgggattctattttctgggcagatttaaccgttgatttggttgtattcaccagttccatcattttcaggttgcttatgttggcaaagtttatagggatttcctcaagcttatttaaattacgaaggacaagcctctctaagctcggaaaattctcatcacaacccttccaataaactagttctgacctttcaatccataataccttaagacaaggaaacacgtaatccttcttcaactcccaagaatcccccctaaatgcattctctttcaccttcaacacttcaagaagctccaaatggccaactgctctgtgtatctcctcccaatccaaccacgtacccgataaagttaactgctttaacctccgagggaatccataattttctgaatcaagctgcaacttcccacttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="43098" stop="44405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43391" g_stop="44105" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U345745" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43391" e_stop="44105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACATTATACATAAGAAACATAATTTTTTTTATATATATATATAAAGAAAAAGAAAGAGCACACTAATCCCAATCACAAAATGACAAAACCAAAGGAGAATATAGGCACACCAATTCAGTTGCAGATATAGAAAGTTGAGAGCCAAAAGAAGGGGTGCAAGGAGGACATAAACACGACGACATTCAGTTGACAAAAGAAAGTAGTAACTGGCTGACCTCTGAAGAGATTTGATTAGTTGCAATGAGAGTTATGTATCGGGCGGGAAAATGGTTAGCTTGAATCCAGTACATACACTTTGGGATTCTATTTTCTGGGCAGATTTAACCGTTGATTTGGTTGTATTCACCAGTTCCATCATTTTCAGGTTGCTTATGTTGGCAAAGTTTATAGGGATTTCCTCAAGCTTATTTAAATTACGAAGGACAAGCCTCTCTAAGCTCGGAAAATTCTCATCACAACCCTTCCAACAAACTAGTTCTGACCTTTCAATCCATAATACCTTAAGACAAGGAAACACGTAATCCTTCTTCAACTCCCAAGAATCCCCCCTAAATGCATTCTCTTTCACCTTCAACACTTCAAGAAGCTCCAAATGGCCAACTGCTCTGTGTATCTCCTCCCAATCCAACCACGTACCTGATAAAGTTAACTGCTTTAACCTCCGAGGGAATCCATAATTTTCTGAATCAAGCTGCAACTTCCCACTTGCTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTACATAAGAAACATAATTTTTTTTATATATATATATAAAGAAAAAGAAAGAGCACACTAATCCCAATCACAAAATGACAAAACCAAAGGAGAATATAGGCACACCAATTCAGTTGCAGATATAGAAAGTTGAGAGCCAAAAGAAGGGGTGCAAGGAGGACATAAACACGACGACATTCAGTTGACAAAAGAAAGTAGTAACTGGCTGACCTCTGAAGAGATTTGATTAGTTGCAATGAGAGTTATGTATCGGGCGGGAAAATGGTTAGCTTGAATCCAGTACATACACTTTGGGATTCTATTTTCTGGGCAGATTTAACCGTTGATTTGGTTGTATTCACCAGTTCCATCATTTTCAGGTTGCTTATGTTGGCAAAGTTTATAGGGATTTCCTCAAGCTTATTTAAATTACGAAGGACAAGCCTCTCTAAGCTCGGAAAATTCTCATCACAACCCTTCCAATAAACTAGTTCTGACCTTTCAATCCATAATACCTTAAGACAAGGAAACACGTAATCCTTCTTCAACTCCCAAGAATCCCCCCTAAATGCATTCTCTTTCACCTTCAACACTTCAAGAAGCTCCAAATGGCCAACTGCTCTGTGTATCTCCTCCCAATCCAACCACGTACCCGATAAAGTTAACTGCTTTAACCTCCGAGGGAATCCATAATTTTCTGAATCAAGCTGCAACTTCCCACTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327603" ref_strand="+" ref_description="SGN-U327603        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G46710.1 | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr3:17217474-17220017 REVERSE | Aliases: T6H20.260 (evalue: 2e-22, score=102) genbank/nr: gi|46389753|dbj|BAD15107.1| hypothetical protein [Nicotiana tabacum] (evalue: 2e-58, score=228)">
      <seq>aagcttgcttcttatattgtggtgcttttcctaaaggttccgagatccctgcttggaagatagtccggttgtggatcgcggaagggttcattcgagaaacaacgggatcaaaaattgaaagtgtagcagagggttacttgaatgaacttgtcagcaagagcttactgatggtaacacaaaggacatccaatggccaaataaaaacattccgcgtgcatgacatgttacatgagttctgtacgctcgaagcaagtgaggaaaattttttcaaagaaataaaactaggtgtcgagcaatctttccccagaaaccaggaattatccacatttcgccgcctcagcattgattcttctgttcaagaattcatttctaccaacccgtatggtgatggcattcgttcattcctctgtttctcctctcggaacattgcgatgtccccatatgagttagagacaatcccaaaatcctttccacttctgagggttcttgacattgagtccatattatttgagttagagacaatccgaaaatccccattccggaagcagttctttcagctatatcatttgagataccttgctatatcaagtgactcgttaaagatccttcctaaattcatggaggacctgtggaatctacaaaccctcataatttcgactcaacaagagacattgaacatagaagcagacatatgtaacatgccacaccttaggcatgttcacacaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="45341" stop="44012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45041" g_stop="44312" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U327603" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45041" e_stop="44312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCGAAATCCTTTCCACTACTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATCCGAAAATCCCCATTCCGGAAGCAGTTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATACTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAATTTCGACTCAACAAGAGACATTGAACATAGAAGCAGACATATGTAACATGCCACACCTTAGGCATGTTCACACAAATGC</genome_strand>
        <mrna_strand>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCAAAATCCTTTCCACTTCTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATCCGAAAATCCCCATTCCGGAAGCAGTTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATCCTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAATTTCGACTCAACAAGAGACATTGAACATAGAAGCAGACATATGTAACATGCCACACCTTAGGCATGTTCACACAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345672" ref_strand="+" ref_description="SGN-U345672        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G07040.1 | Symbol: None | disease resistance protein RPM1 (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Identical to RPM1 (gi:1361985) | chr3:2225958-2229030 REVERSE | Aliases: F17A9.20 (evalue: 6e-21, score=97.8) genbank/nr: gi|5524754|emb|CAB50786.1| Rx protein [Solanum tuberosum](evalue: 7e-28, score=127)">
      <seq>tttcttaaaatcatcaaccaattcaccagaaacactgaacaatatcgatatgtaactgaggaggctctagctgaagtaatacgcaaacatttgttgttcggaaagtatctgattgtattggatgatgtgtggacacaggaacctttggatgatgtcaaaattgctttaccaaacaagatgagaggtaaagtcttgtttaccactcgagatgacgaggtgggaaaattttgttgcaatgaacctcatcatataaaattcctaaccgaccacgaatgttgggagctactacagaagaaggttttccacaaggataaatgtcccctggacttggaagtactcgggaagcgcatagctaagaaatgtatgggtcttcctcttgcagctttggtgattgcgggagccctaaccgggagaggcaagactaaaagtgagtgggaaatagtgcatcaatttgtgagtgaacacattattagtagtgatattaggatgaccaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="45879" stop="44780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45579" g_stop="45080" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U345672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45579" e_stop="45080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTAAAATCATCAACCAATTCACCAGAAACACTGAACAATATCGATATGTAACTGAGGAGGCTCTAGCTGAAGTAATACGCAAACATTTGTTGTTCGGAAAGTATCTGATTGTATTGGATGATGTGTGGACACAGGAACCTTTGGATGATGTCAAAATTGCTTTACCAAACAAGATGAGAGGTAAAGTCTTGTTTACCACTCGAGATGACGAGGTGGGAAAATTTTGTTGCAATGAACCTCATCATATAAAATTCCTAACCGACCACGAATGTTGGGAGCTACTACAGAAGAAGGTTTTCCACAAGGATAAATGTCCCCTGGACTTGGAAGTACTCGGGAAGCGCATAGCTAAGAAATGTATGGGTCTTCCTCTTGCAGCTTTGGTGATTGCGGGAGCCCTAACCGGGAGAGGCAAGACTAAAAGTGAGTGGGAAATAGTGCATCAATTTGTGAGTGAACACATTATTAGTAGTGATATTAGGATGACCAAGAAATT</genome_strand>
        <mrna_strand>TTTCTTAAAATCATCAACCAATTCACCAGAAACACTGAACAATATCGATATGTAACTGAGGAGGCTCTAGCTGAAGTAATACGCAAACATTTGTTGTTCGGAAAGTATCTGATTGTATTGGATGATGTGTGGACACAGGAACCTTTGGATGATGTCAAAATTGCTTTACCAAACAAGATGAGAGGTAAAGTCTTGTTTACCACTCGAGATGACGAGGTGGGAAAATTTTGTTGCAATGAACCTCATCATATAAAATTCCTAACCGACCACGAATGTTGGGAGCTACTACAGAAGAAGGTTTTCCACAAGGATAAATGTCCCCTGGACTTGGAAGTACTCGGGAAGCGCATAGCTAAGAAATGTATGGGTCTTCCTCTTGCAGCTTTGGTGATTGCGGGAGCCCTAACCGGGAGAGGCAAGACTAAAAGTGAGTGGGAAATAGTGCATCAATTTGTGAGTGAACACATTATTAGTAGTGATATTAGGATGACCAAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340687" ref_strand="+" ref_description="SGN-U340687        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G58807.1 | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative, similar to disease resistance protein rpp8 (Arabidopsis thaliana) gi:3901294:gb:AAC78631; identical to cDNA RF45 mRNA for PRM1 homolog, partial cds GI:6520196 | chr1:21784239-21787961 FORWARD | Aliases: None (evalue: 5e-14, score=75.1) genbank/nr: gi|28555904|emb|CAD45032.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare](evalue: 1e-16, score=90.1)">
      <seq>ttttttttttttttcgggtgatgaaaggaattgctctattgcaaaagtccaacaacaaccaacaattgatgaggcaaaacaacaagtttgtttacaaccatgaagacggtgcagttgttgttggaatggaggacgaaaaagaggagataatacaagttttgttacttaattcacaagtatcatcagaagtcgatttccaagcagttcccatatggggacgtagtggcatgggaaaatctacacttgttaatgaaatatacaacgaccctcgcattgttaaagagtttggacatcctcatcttgtcaatattcgtctatctgaaaacatcaatgcccatgacgcacttcaacatgttttcgagttgtttgaaggaagtcgtatagatgacaagtatgttgacatgtccacaactagtttggaagattgtgtcagacaacatcttgaaatgtcaaggacgttgattgttctacaaggagtaggctcaattgatgattggcggatgttgcgttctgtcctgggagctaaaggttgcatcatactgattacgactcgagcaagacaagtagcagaaagtataactcaagcaattcatattcatgaaaagaggcctttaaccgaagaaaacagctggaagttatttaaggagatggtttggccaggtatgtatatttttaatcggaatgctatctttagtactattagtaaaaaaatcagagagtaatggnatatatgttgtttctttatgaccaggaggagctgaaatccatcggaaatattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="49786" stop="51154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50079" g_stop="50854" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U340687" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50079" e_stop="50854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAGTTTGTGTCGGGTGATGAAAGGAATTGCTCTATTGCAAAAGTCCAACAACAACCAACAATTGATGAGGCAAAACAACAAGTTCGTTTACAACCATGAAGACGGTGCAGTTGTTGTTGGAATGGAGGACGAAAAAGAGGAGATAATACAAGTTTTGTTACTTAATTCACAAGTATCATCAGAAGTCGATTTCCAAGCAGTTCCCATATGGGGACGTAGTGGCATGGGAAAGGCTACACTTGTTAATGAAATATACAACGACCCTCGCATTGTTAAAGAGTTTGGACATCCTCATCTTGTCAATATTCGTCTATCTGAAAACATCAATGCCCATGACGCACTTCAACATGTTTTCGAGTTGTTTGAAGGAAGTCGTATAGATGACAAGTATGTTGACATGTCCACAACTAGTTTGGAAGATTGTGTCAGACAACATCTTGAAATGTCAAGGACGTTGATTGTTCTACAAGGAGTAGGCTCAATTGATGATTGGCGGATGTTGCGTTCTGTCCTGGGAGCTAAAGGTTGCATCATACTGATTACGACTCGAGCAAGACAAGTAGCAGAAAGTATAACTCAAGCAATTCATATTCATGAAAAGAGGCCTTTAACTGAAGAAAACAGCTGGAAGTTATTTAAGGAGATGGTTTGGCCAGGTATGTATATTTTTAATCGGAATGCTATCTTTAGTACTAT--GT---TGTTTTGGTTCAAAATGGTATATATGTTGTTTCTTTATGACCAGGAGGAGCTGAAATCCAATCGGCAATATTGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCGGGTGATGAAAGGAATTGCTCTATTGCAAAAGTCCAACAACAACCAACAATTGATGAGGCAAAACAACAAGTTTGTTTACAACCATGAAGACGGTGCAGTTGTTGTTGGAATGGAGGACGAAAAAGAGGAGATAATACAAGTTTTGTTACTTAATTCACAAGTATCATCAGAAGTCGATTTCCAAGCAGTTCCCATATGGGGACGTAGTGGCATGGGAAAATCTACACTTGTTAATGAAATATACAACGACCCTCGCATTGTTAAAGAGTTTGGACATCCTCATCTTGTCAATATTCGTCTATCTGAAAACATCAATGCCCATGACGCACTTCAACATGTTTTCGAGTTGTTTGAAGGAAGTCGTATAGATGACAAGTATGTTGACATGTCCACAACTAGTTTGGAAGATTGTGTCAGACAACATCTTGAAATGTCAAGGACGTTGATTGTTCTACAAGGAGTAGGCTCAATTGATGATTGGCGGATGTTGCGTTCTGTCCTGGGAGCTAAAGGTTGCATCATACTGATTACGACTCGAGCAAGACAAGTAGCAGAAAGTATAACTCAAGCAATTCATATTCATGAAAAGAGGCCTTTAACCGAAGAAAACAGCTGGAAGTTATTTAAGGAGATGGTTTGGCCAGGTATGTATATTTTTAATCGGAATGCTATCTTTAGTACTATTAGTAAAAAAATCAGAGAGTAATGGNATATATGTTGTTTCTTTATGACCAGGAGGAGCTGAAATCC-ATCGGAAATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332541" ref_strand="+" ref_description="SGN-U332541        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G53350.1 | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr1:19907567-19910580 FORWARD | Aliases: F12M16.35, F12M16_35 (evalue: 7e-17, score=84.3) genbank/nr: gi|7110565|gb|AAF36987.1| viral resistance protein [Arabidopsis thaliana](evalue: 2e-15, score=85.5)">
      <seq>ctatgaaagaaggtggacgcttgtggttgtgatcatatctctcagtaaccttttgagtaaatgactcaggcatctttatcatcttgaattcttgaagagaatctagaaattctgaaccatctgggagcgttaccagttcattgcagtattcaattttgagatgagaaagcaatggcatggctgaaatttctaccctccatttctcgaatgagaataatcttgagagttccaagtgtttgagctcttgaaaacccgaagcagaacataccatctgattcactttgaaagcatcatcttcgagcaccagaagccgtaggttgttgagtttttctagtgttggcattggatcttcctccagttgagtgctacgtaggacaatctccgtgaaattttgagagatatcaaagtatggtggtagcgttttaatataaccctcaaaagacactattggtggaaccccggaatttaatatctcacgaaaggcagagtgttttgtatctgaataacaatcaaagtttttaacttcaagggagcaacgacgaagccccttatcactcctacttttcataaagtcagttattaaattaagatcctcaacacatacttcaacctttgcatctaggttccggagttttttcaatttgaagagatggcgtatctcacacaacttggagtttaaattctttagtgtttgaagctctgccaatccatcaagtcggagttttttcccattttgcagttggaatactagtggaaagatacaatgttgcaaccttgccattttctgaacacattatatggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="52804" stop="51399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52504" g_stop="51699" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U332541" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52504" e_stop="51699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACTAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCATTGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAAAGGCAGAGTGTTTTGTATCTGAATAACAATCAAAGTTTTTAACTTCAAGGGAGCAACGACGAAGCCCCTTATCACTCCTACTTTTCATAAAGTCAGTTATTAAATTAAGATCCTCAACACATACTTCAACCTTTGCATCTAGGTTCCGGAGTTTTTTCAATTTGAAGAGATGGCGTATCTCACACAACTTGGAGTTTAAGTTCTTTAGTGTTTGAAGCTCTGCCAATCCATCAAGTCGGAGTTTTTTCCCATTTTGCAGTTGGAATACTAGTGG-AAGATACAAATGTTGCAACCTTGCCATTTTCTGAAACACATTATATGGTATG</genome_strand>
        <mrna_strand>CTATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACCAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCAATGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAAAGGCAGAGTGTTTTGTATCTGAATAACAATCAAAGTTTTTAACTTCAAGGGAGCAACGACGAAGCCCCTTATCACTCCTACTTTTCATAAAGTCAGTTATTAAATTAAGATCCTCAACACATACTTCAACCTTTGCATCTAGGTTCCGGAGTTTTTTCAATTTGAAGAGATGGCGTATCTCACACAACTTGGAGTTTAAATTCTTTAGTGTTTGAAGCTCTGCCAATCCATCAAGTCGGAGTTTTTTCCCATTTTGCAGTTGGAATACTAGTGGAAAGATAC-AATGTTGCAACCTTGCCATTTTCTG-AACACATTATATGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330438" ref_strand="+" ref_description="SGN-U330438        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cttatacaccttgttcctcacaatgacaaaataatcgatccaaatctcacctctgtaaacatcgaaataaacagcttttaccaacctccttgggttacaagctacttcaccattctcttctcattcacactattcggaataatcatctctattgctcagactatttacgccgtgctagcataccacaaacccccatcctcccctacataaccgtgtgaattagtataaaaatttgtaggaaaataagaggagttttcatacgaaaatctctatctaattcaaacttttcccaatgtttgaacactttgataaattgtatttttttgttttttgttttatacaaacagtgtcatatccatatatatgttattaacctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="59281" stop="58312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58981" g_stop="58613" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="386"/>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U330438" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58981" e_stop="58613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAGTAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGA--AG-----ATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</genome_strand>
        <mrna_strand>CTTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAATAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGAGGAGTTTTCATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327917" ref_strand="+" ref_description="SGN-U327917        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14165781-14169603 FORWARD | Aliases: F4P9.19, F4P9_19(evalue: 2e-16, score=81.6) genbank/nr: gi|26451960|dbj|BAC43072.1| unknown protein [Arabidopsis thaliana] gi|29029070|gb|AAO64914.1| At2g33420 [Arabidopsis thaliana](evalue: 1e-14, score=81.6)">
      <seq>ttccctcttccgcctgatatttcactgattttttaattaaaaaaacaaaacttctcctcgtcgccgtaatccacccgcattttttttttttaaaaaaaaaatgccgcctcaatttcaccttccccaaactataaaaactcaacccgctaaaaaatccgacccgaatgatgacccaatcatcgtcgtcgatctcgtatggccattcggagatctagaaggacttgatcgggatgattttcgggaggcagcttacgagattttcttcacggcgtgtaggtcatcgccggggtttggtggtaggacggcggcaatttcttcgtcatcagacgggtcgggtgaaggaaatggatccgggtcgggtacgggtttatccggtcccgggtcaccgaaaccgaccggagtagggatggcgataactagtagggtgaaaacggcgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="61213" stop="62253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61513" g_stop="61953" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U327917" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61513" e_stop="61953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCTTCCGCCTGATATTTCACTGATATTTTAATTAAGAAAACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTGAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATTCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTCGATCGGGATGATTTTCGAGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGTGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGG</genome_strand>
        <mrna_strand>TTCCCTCTTCCGCCTGATATTTCACTGATTTTTTAATTAAAAAAACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTTAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATCCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTTGATCGGGATGATTTTCGGGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGCGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332223" ref_strand="+" ref_description="SGN-U332223        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14165781-14169603 FORWARD | Aliases: F4P9.19, F4P9_19(evalue: 3e-70, score=261) genbank/nr: gi|15226107|ref|NP_180900.1| expressed protein [Arabidopsis thaliana] gi|25408269|pir||C84745 hypothetical protein At2g33420 [imported] - Arabidopsis thaliana gi|2459424|gb|AAB80659.1| unknown protein [Arabidopsis thaliana](evalue: 2e-68, score=261)">
      <seq>aaaacggcgttggggttgaagatgttgaagaagtctccgtcgcggagaaagtccggtggcggtagtggtgttaatggtccgtcttcgcctgctggagttgcgagcccgagaacaccctcgggctcgatcatgcagcaggcgaaaatgcggaggccattgacgtccgccgagattatgaggttgcagatgagagtgtcggagcagagtgataataggctaaggaaaactcttatgagaactctcgtcggccaaattgggaggagagcagagacaataatcttacctttggagcttttacgccaccttaaaccatctgaattcaacgatcctcaagaataccatctatggcaaaagcgtcagcttcgtatcctggatataggcctactccttcacccttctatcccagtagaaaaagacaatgcatctgcatcgcgattactagagatcattcaagcttgtgagatcaaaacaatcgacactagcaagaattccgagacgatgaaatcgctaagtaatgcagtagtctccttagcttggagaagtgttgatgacactcctagtgatacatgtcgttgggctgatggattccctctcaacatccacatttacacggctctcttgggatcgatatttgatctttaagacgatacgttagtccttaatgaggttgatgagcttcttgaatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="61640" stop="63822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61940" g_stop="62191" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62192" i_stop="63084" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63085" g_stop="63522" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="691" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U332223" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61940" e_stop="62191"/>
          <exon e_start="63085" e_stop="63522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGGCGTTGGGGTTGAAGATGTTGAAGAAGTCTCCGTCGCGGAGAAAGTCCGGTGGCGGTAGTGGTGTTAATGGTCCGTCTTCGCCTGCTGGAGTTGCGAGCCCGAGAACACCCTCGGGCTCGACCATGCAGCAGGCGAAAATGCGGAGGCCATTGACGTCCGCCGAGATTATGAGGTTGCAGATGAGAGTGTCGGAGCAGAGTGATAATAGGCTAAGGAAAACTCTTATGAGAACTCTCGTCGGCCAAGTACGTAATTTGCATGCATTTCAAACTATTTTATGTTATTTTAATACTAAAACTGCACATTCATCGTAGAATATTATGATACGAAAATATAAATTTATATCTCGTAAAAAAGAGTTATATTTCTCATTAAGCGCATATATTAAAGACCGGCCAGTCCAAACAAATGACCCTTTTTTTTTTCAAAACTATTTGATATCCCAAAATTGCAAATGGTTTTGTGGAAAAGTTCTTTTAAATTTTTTTATTTGTTTTATTAAAAGAAGATGTTTTGTTTTTCTTCTTAATAAACCATATTTTTTCAATTTTTTTATTACATTGACCTACATTTTGTATGCTTTATCTCTCTATTATTCCATTTGTTTTAATCTATGAGTCTTAATTTTCTTTTTTAGTATGTTTAGAAAAAATGTAATTTAATACTTTATTTGTTTAAATTTATTTGTCTGATTTTGACATGACACGAAATTTAAAAAAGTAAAGAAGATCTTTTAATCTTATAGTGTTAAACTAAAGATATATAGAATGTACTAAAACGTTGTTTGATTTTGTGATCTTAGACATGCTAAGTGAAAAGTTAAAATTAAAAATTTGTAAGACAAACAGATTGAAACAAAGAGAGTATATTTGTTAGTAACTCGACATGTTTAAAATCATAAGATTCAAAAACCATTTCGATGCATTATAAACATTTTTAGATTAAAGCCATAAGCCAAGATTATAATGTCTTTACTTATTTTCTTCGTACTCAAACTAAGACACATAAACTGAAACAGACTAAGTACATGTTTCTTTAAATACTACTAGTAACATTCTTATTGTCTCAACTCATAATGTCTGTAATGTTTGCATCCTAGCATTACATTAGTAGCTCAAATGGAAGAATTTTTGTGCAGATTGGGAGGAGAGCAGAGACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCTGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGCCTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATCAAAACAATCGACACTAGCAAGAATTCCGAGACGATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATCTTAAAGACGATACGTTAGTCCTTAATGAGGTTGATGAGCTTCTTGAA-TTGATG</genome_strand>
        <mrna_strand>AAAACGGCGTTGGGGTTGAAGATGTTGAAGAAGTCTCCGTCGCGGAGAAAGTCCGGTGGCGGTAGTGGTGTTAATGGTCCGTCTTCGCCTGCTGGAGTTGCGAGCCCGAGAACACCCTCGGGCTCGATCATGCAGCAGGCGAAAATGCGGAGGCCATTGACGTCCGCCGAGATTATGAGGTTGCAGATGAGAGTGTCGGAGCAGAGTGATAATAGGCTAAGGAAAACTCTTATGAGAACTCTCGTCGGCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGAGGAGAGCAGAGACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCTGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGCCTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATCAAAACAATCGACACTAGCAAGAATTCCGAGACGATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATCTTTAAGACGATACGTTAGTCCTTAATGAGGTTGATGAGCTTCTTGAATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346105" ref_strand="+" ref_description="SGN-U346105        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14165781-14169603 FORWARD | Aliases: F4P9.19, F4P9_19(evalue: 7e-70, score=260) genbank/nr: gi|26451960|dbj|BAC43072.1| unknown protein [Arabidopsis thaliana] gi|29029070|gb|AAO64914.1| At2g33420 [Arabidopsis thaliana](evalue: 5e-68, score=260)">
      <seq>tgagatcaaaagactctgaaacatggaatccaaaatccaaaagtgagccatatgcacaatcagcaattgatctagtgagacattccaaggaagcagtagacaatttcttcgaaattcctacaatcattactgagaatttggttaatgatatcgctgatggcatcgagaacttattcaaagattatgttatctttgttgcatcatgtggggctaaacagaactacatgcctgcacttcctcctttgacaagatgcggccaagactcaaaatttgtgaagatgtggaagaaagctgcctgtagtgtcggatcaaacgatccaaaccagcatttgacagacgaagataacaatccccgtccttcaacaagccgaggaactcaacgcctctatgtaaggcttaacaccttgcattacctccttcaacaactcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="64177" stop="65642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64477" g_stop="64496" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64497" i_stop="64849" i_length="353">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64850" g_stop="65036" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="207" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65037" i_stop="65118" i_length="82">
            <donor d_prob="0.200" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65119" g_stop="65342" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="431" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U346105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64477" e_stop="64496"/>
          <exon e_start="64850" e_stop="65036"/>
          <exon e_start="65119" e_stop="65342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCAAAAGACTCTGAAGTAAGTCATTTTGTTACTCTTGCTATTTATAAATAGGGACTCTTATAGTCATACTAAAAGTAATTAGAAAGACGGGTAGCCCAACGTATAAAGCATCCCCGTTCACACAGGGTCTTTGGAAGGGCTGCATTCCAAGGGGGTGTAATGTCGAAACAAAGTCCCTCTGTTGTTCACTCAAAGAGGCAATACATCCTTTGTTTGAATGGTACTTCGTTGCAGATAAAGATTATACGGACATTCTAGAAAAATGTCAGCTTATCGTGATGCAAGCATGAGTGGCTGATTCCACAACTTGAACACATGTCACACGGAGACAACTATACTGTTTTAATGCAAAATATTTTGTTATGCAGACATGGAATCCAAAATCCAAAAGTGAGCCATATGCACAATCAGCAATTGATCTAGTGAGACATTCCAAGGAAGCAGTAGACAATTTCTTCGAAATTCCTACAATCATTACTGAGAATTTGGTTAATGATATCGCTGATGGCATCGAGAACTTATTCAAAGATTATGTTATCTTTGTTGCATCATGTGGTAAGAACGAGTTTAACGAACCATATTCGTTCAAGTATTTTGATGCGTGGGTCATCTTTTGATAGTCATAATCTCTCTGCAGGGGCTAAACAGAACTACATGCCTGCACTTCCTCCTTTGACAAGATGCGGCCAAGACTCAAAATTTGTGAAGATGTGGAAGAAAGCTGCCTGTAGTGTCGGATCAAACGATCCAAACCAGCATTTGACAGACGAAGATAACAATCCCCGTCCTTCAACAAGCCGAGGAACTCAACGCCTCTATGTAAGGCTTAACACCTTGCATTACCTCCTTCAACAACTCAAT</genome_strand>
        <mrna_strand>TGAGATCAAAAGACTCTGAA.................................................................................................................................................................................................................................................................................................................................................................ACATGGAATCCAAAATCCAAAAGTGAGCCATATGCACAATCAGCAATTGATCTAGTGAGACATTCCAAGGAAGCAGTAGACAATTTCTTCGAAATTCCTACAATCATTACTGAGAATTTGGTTAATGATATCGCTGATGGCATCGAGAACTTATTCAAAGATTATGTTATCTTTGTTGCATCATGTG..................................................................................GGGCTAAACAGAACTACATGCCTGCACTTCCTCCTTTGACAAGATGCGGCCAAGACTCAAAATTTGTGAAGATGTGGAAGAAAGCTGCCTGTAGTGTCGGATCAAACGATCCAAACCAGCATTTGACAGACGAAGATAACAATCCCCGTCCTTCAACAAGCCGAGGAACTCAACGCCTCTATGTAAGGCTTAACACCTTGCATTACCTCCTTCAACAACTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328885" ref_strand="+" ref_description="SGN-U328885        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14165781-14169603 FORWARD | Aliases: F4P9.19, F4P9_19(evalue: 3e-72, score=268) genbank/nr: gi|26451960|dbj|BAC43072.1| unknown protein [Arabidopsis thaliana] gi|29029070|gb|AAO64914.1| At2g33420 [Arabidopsis thaliana](evalue: 2e-70, score=268)">
      <seq>gtctaatgttcttcgattccaactctgtcttctacgcaagcctatacgtaggggacgtagagaatgcacgtattcgaccagctctaaggatactcaaacaaaacctaactcttttgtgtgctatcctcactgaccgggctcaagcattagcgcttaaagaagtcatgagagcgtctttcgaggcataccttatggttttactagccggtggaccgcgaagaaacttctttaggatggatcatcaaatgattgaggaagattttgaaagtttaaagaaggtattttgtacttgtggtgaaggtttgatactagaagatgttgtggaaaaagaagctgcaatagttgaagagatagtgcctttaatgggacaatcaacagaacaattggttgaagattttagcaatttggcttgtgaaacaagtggagttggagttgttgtgggaaatggacaaaaattgcctatgccaccaacaacaggaaaatggaatagatcagatgctaacacaatcttgagggtactttgtcatagaaatgataaaattgctaataatttcttgaagaaaacattccacttagcaaagaggaggggttgaaaaacaatttgaactaaaaaaagccgtcaactcggaccttctactgtcgtacctatgtcagatccttctaaaatcacacaccaaacgatatatttaaagagtcagagcaacataagcctaaaaaacggaaaaagagaggtttcacttgtacagacaaatgaagaagaaagtaaattttctaagtatatatgctattaattaaagttaatttttatttgaaggatgtaaattaaagccttctagactataaaaaggtttgtaactttgaactaatttttttctggagtatatatgctatgaatttttttttttttttgaaggattgtaaagtaaagccttctagaataaaaaaaanggtttgtaacatgagtatcttgagcaatattgtatataatgcttttgatctttatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="65200" stop="66812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65500" g_stop="66519" g_length="1020"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1015" r_length="1015" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U328885" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>1020</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65500" e_stop="66519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGGGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGTCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGCTGGAGTTGTTGTGGGAAATGGAGAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTGGCAAAGAGGAGGGGTTGAAAAACAATTTGATCTAAAAAAAGCCGTCAACTCGGACCCTCTACTGTCGTATCTGTGTCAGATCCTTCTAAAATCACACACCAAACAGTATGTTTGAAGAGTCAGAGCAACATAAGCCTAAAAGACGGAAGAAGAGAGGTTTCACTTGTACATACAAATGAAGAAGAAAGTAAAATTTTCTAAGTATATATGCTATTAATTAAAGTTTATTTTTATTTGAAGGATGTAAATTAAAGCCTTCTAGACTATAAAAAAGGTTTGTAACTTTGAACTAAATTTTTTCTAAAGTATATATGCTATGAAAGTGTTCTTTTTTTTTCTTTTTAAAGGATTTGTAAAGTAAAGCCTTCTTGAATATAAAAAA-GGTTTGTAA-ATGAGTATCTTGAG-AATATTG--TATAATGCTTTTGATCTTTATCTAAATTACTCG</genome_strand>
        <mrna_strand>GTCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGAGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGCCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGTTGGAGTTGTTGTGGGAAATGGACAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTAGCAAAGAGGAGGGGTTGAAAAACAATTTGAACTAAAAAAAGCCGTCAACTCGGACCTTCTACTGTCGTACCTATGTCAGATCCTTCTAAAATCACACACCAAACGATATATTTAAAGAGTCAGAGCAACATAAGCCTAAAAAACGGAAAAAGAGAGGTTTCACTTGTACAGACAAATGAAGAAGAAAGT-AAATTTTCTAAGTATATATGCTATTAATTAAAGTTAATTTTTATTTGAAGGATGTAAATTAAAGCCTTCTAGACTAT-AAAAAGGTTTGTAACTTTGAACTAATTTTTTTCTGGAGTATATATGCTATG-AA----T-TTTTTTTTT-TTTTTGAAGGA-TTGTAAAGTAAAGCCTTCTAGAATAAAAAAAANGGTTTGTAACATGAGTATCTTGAGCAATATTGTATATAATGCTTTTGATCTTTATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331875" ref_strand="+" ref_description="SGN-U331875        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | phragmoplast-associated kinesin-related protein 2 (PAKRP2), identical to cDNA phragmoplast-associated kinesin-related protein 2 (PAKRP2) GI:16973450 | chr4:8244190-8247437 FORWARD | Aliases: DL3205W, FCAALL.179(evalue: 2e-11, score=66.6) genbank/nr: gi|18414189|ref|NP_567426.1| kinesin-related protein [Arabidopsis thaliana] gi|16973451|gb|AAL32293.1| phragmoplast-associated kinesin-related protein 2 [Arabidopsis thaliana] gi|16973453|gb|AAL32294.1| phragmoplast-associated kinesin-related protein 2 [Arabidopsis thaliana](evalue: 2e-09, score=66.6)">
      <seq>atgttgaaacatgaatttgaaaataagatccaacaatgtcaggaaacagcaaatgaattcgtagagacagaaaggaggaaaatggaagaaagaatgttccaacagcaacaagagtttgaaatgcttagaagacggttggaggagattgagtccgagctttggcattcaagagttggcagcagatcaactgaagtggaggagaacagctttgggaaaagactactggagatgtattctgaagacgcgggaatggtgaaatctatggatttggatagatcaattgatatggactgtggaaagaaagcagaaagtaacataattcaggcaatgttgggctatcctagcataaccaatgcaagagaaattgaagatccttctatcttattgcaacatttcaccaacaaatcattcttgagcaccgtgttcgaagaggaagaagaaggtaacgacagtgaaggggataaagagaatccttacgtcgaggaggtgcaaaaagaggttattgaggaaaagacaatatgttccgacaatgtaagtagagtagaagatcgttccgatgatctctctagtgacaacacagccccttccagaaaagagctaattcaaaatatattcaaactctgcggaaattctagagaactctctcagcaatgtattactaccccctcagtgcctgcagaaaagagagttaaagacactgaatcaaaatcacctccagttaaagaaattgtagagaattcacctataacaaaaaatcataatttctctactgagaaagtaaatgattcaaaggagaacttcaacccgaattcagagttgaaatgggaagctgcatcaaaggagaatcccatgattatcactacactaacggatcgtttggtttgaaagacaagttatngatgggattagttgtgctcagactatttatcctggattacttatcctgagaatatttcttattgtttgtttcgtttgttgtattaagacnatacgcattgtattctttcaaagaaaaagttgtttgtatctgaacataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="69600" stop="71237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69900" g_stop="70942" g_length="1043"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1043" r_length="1043" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U331875" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1043</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69900" e_stop="70942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGAAACATGAATTTGAAAATAAGATCCAACAATGTCAGGAAACAGCAAATGAATTCGTAGAGACAGAAAGGAGGAAAATGGAAGAAAGAATGTTCCAACAGCAACAAGAGTTTGAAATGCTTAGAAGACGGTTGGAGGAGATTGAGTCCGAGCTTTGGCATTCAAGAGTTGGCAGCAGATCAACTGAAGTGGAGGAGAACAGCTTTGGGAAAAGACTACTGGAGATGTATTCTGAAGACGCGGGAATGGTGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTCATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTCTAGTGACAACACAGCCCCTTCCAGAAAAGAGCTAATTCAAAATATATTCAAACTCTGCGGAAATTCTAGAGAACTCTCTCAGCAATGTATTACTACCCCCTCAGTGCCTGCAGAAAAGAGAGTTAAAGACACTGAATCAAAATCACCTCCAGTTAAAGAAATTGTAGAGAATTCACCTATAACAAAAAATCATAATTTCTCTACTGAGAAAGTAAATGATTCAAAGGAGAACTTCAACCCGAATTCAGAGTTGAAATGGGAAGCTGCATCAAAGGAGAATCCCATGATTATCACTACACTAACGGATCGTTTGGTTTGAAAGACAAGTTAT-GATGGGATTAGTTGTGCTCAGACTATTTATCCTGGATTACTTATCCTGAGATTATTTCTTATTGTTTGTTTCGCTTGTTGTATTAAAGACAATACGCATTGTATTCTTTCGAAGAAAAAGTTGTTTGTATCTGAACATACACTCCA</genome_strand>
        <mrna_strand>ATGTTGAAACATGAATTTGAAAATAAGATCCAACAATGTCAGGAAACAGCAAATGAATTCGTAGAGACAGAAAGGAGGAAAATGGAAGAAAGAATGTTCCAACAGCAACAAGAGTTTGAAATGCTTAGAAGACGGTTGGAGGAGATTGAGTCCGAGCTTTGGCATTCAAGAGTTGGCAGCAGATCAACTGAAGTGGAGGAGAACAGCTTTGGGAAAAGACTACTGGAGATGTATTCTGAAGACGCGGGAATGGTGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTTATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTCTAGTGACAACACAGCCCCTTCCAGAAAAGAGCTAATTCAAAATATATTCAAACTCTGCGGAAATTCTAGAGAACTCTCTCAGCAATGTATTACTACCCCCTCAGTGCCTGCAGAAAAGAGAGTTAAAGACACTGAATCAAAATCACCTCCAGTTAAAGAAATTGTAGAGAATTCACCTATAACAAAAAATCATAATTTCTCTACTGAGAAAGTAAATGATTCAAAGGAGAACTTCAACCCGAATTCAGAGTTGAAATGGGAAGCTGCATCAAAGGAGAATCCCATGATTATCACTACACTAACGGATCGTTTGGTTTGAAAGACAAGTTATNGATGGGATTAGTTGTGCTCAGACTATTTATCCTGGATTACTTATCCTGAGAATATTTCTTATTGTTTGTTTCGTTTGTTGTATT-AAGACNATACGCATTGTATTCTTTCAAAGAAAAAGTTGTTTGTATCTGAACATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335099" ref_strand="+" ref_description="SGN-U335099        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G04430.1 | Symbol: None | dehydration-responsive protein-related, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr1:1198136-1201526 FORWARD | Aliases: F19P19.11, F19P19_11 (evalue: 9e-70, score=260) genbank/nr: Protein(evalue: 4e-72, score=274)">
      <seq>ttctaagatttcatcagacaccttgagaaatatcatggacatgaaggctaacttggggtcatttgctgctgctctgaaggacaaaaacgtatgggtcatgaacgttgtacccaaagatggacccaacactctcaagattgtatacgaccgaggcttgattggcacaacacatgactggtgtgaagcattctcaacctatcccaggacctatgatttgctccacgcttggacagtcttctctgatgctgagaagaaaggttgcagtggtgaggacttgttactcgagattgatcgcatactaaggcctacaggtttcgttatcatccgtgataaacaacatattatcgaattcataaagaagcatttatcagcattgcactgggaagcagttgcatcaactgattccacctcggatcccgagcaggacaacgatgaggttgttttcgtcgtgcaaaagaaactgtggctcacaagtggaagcatcagagatacagaatagatagcagagtttgtaacacattttgctaattcattttctctctaggcctttagggtgttgaagaaaaaaaaatgtatgcccttaattttcagtttgaatttgtatttgcgggttatttattttctttttttactcccaacgcatttttatgtaagttttacaactgagagactacataatgtattcataggctattttttttttataattaatggattttaatatttgatcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="77477" stop="75856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77177" g_stop="77001" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76714" g_stop="76156" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="735" r_length="558" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U335099" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77177" e_stop="77001"/>
          <exon e_start="76714" e_stop="76156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTGGTAGGTGGATAATCTTTTTCACTTTGTATAACCATGTTAGTCTGCTAGTTTTACTTTGTGGCCTAAATCTTTCGCCTTTAGGACATTGAACTGAGCATATTTATGAACATCTTAGTTTTTCTAGCCATTATGAAACTAATGTAGCTGTGCGTTGTTATTCAAGACTTTTAATGGTTGAGGAGCTCGGATATAGTTATCGGTCTTATATTTTCCCCAGTAGATGTTGATCATAGCCAAGGTGAACGTTCATTTGTAACATTAGTTGCACTTGCGTGCTTTTGTGCAGGTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAGAAAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTTATAATTAACGTATTTTAATATTTGATCATTTT</genome_strand>
        <mrna_strand>TTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTGCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG..............................................................................................................................................................................................................................................................................................GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAG-AAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGGGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTTACAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTTATAATTAATGGATTTTAATATTTGATCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315339" ref_strand="+" ref_description="SGN-U315339        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT4G14360.1 | Symbol: None | dehydration-responsive protein-related, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr4:8267656-8271107 REVERSE | Aliases: DL3220C, FCAALL.222 (evalue: 0, score=831) genbank/nr: gi|18414198|ref|NP_567427.1| dehydration-induced protein-related [Arabidopsis thaliana] gi|16604605|gb|AAL24095.1| putative ankyrin protein [Arabidopsis thaliana] gi|20259233|gb|AAM14332.1| putative ankyrin protein [Arabidopsis thaliana](evalue: 0, score=831)">
      <seq>tgccaattaagtggccaagaagtagagatgaggtctggaaattgaacattcctcatacgcaccttgcaaatgagaaatctgaccagaactggatggttgtgaagggtgaaaagatagtatttcctggtggaggcactcactttcactatggagcagataagtacattgcgctaattgccaacatgctgaactttacaaacaataacttgaacgatgagggaaggatacggacagtttttgatgttggttgcggtgtggctagctttggtggttatcttctatcctctgatattatagcaatgtcattggcaccaaatgatgtgcatcagaatcaaatacagtttgctttagagagaggaattcctgcataccttggtgtccttggaacgaaaagactgccttatccaagcaggtcatttgaattttctcactgttctcgttgtaggattgattggcttcaaagggatggaatccttctccttgagctcgatagggtacttagacctggaggctattttgcatactcatcccctgaagcatatgcacaggatgaagaggatttaagaatatggagagagatgagtacacttgttgaacgcatgtgctggagaattgcagcgaaaaagaaccaaactgtcatttggcaaaaacctctaaacaatgattgttacatggaaagacctcctggtacgcagccaccactctgtcgatctgataatgatccagatgctgtctggggtgtgaatatggaggcatgcataacaccttattctgaacatgaccacaaagtcagtggaagtggactggctccttggccagctcgattaagtagtcctcctccccgtcttgctgactttgggtattcgaatgaaatgtttgaaaaggacacggacacttggagggagagggttgaccattattggagtctgttaagttctaagatttcatcagacaccttgagaaatatcatggacatgaaggctaacttggggtcatttgctgctgctctgaaggacaaaaacgtatgggtcatgaacgttgtacccaaagatggacccaacactctcaagattgtatacgaccgaggcttgattggcacaacacatgactggtgtgaagcattctcaacctatcccaggacctatgatttgctccacgcttggacagtcttctctgatgctgagaagaaaggttgcagtggtgaggacttgttactcgagattgatcgcatactaaggcctacaggtttcgttatcatccgtgataaacaacatattatcgaattcataaagaagcatttatcagcattgcactgggaagcagttgcatcaactgattccacctcggatcccgagcaggacaacgatgaggttgttttcgtcgtgcaaaagaaactgtggctcacaagtggaagcatcagagatacagaatagatagcagagtttgtaacacattttgctaattcattttctctctaggcctttagggtgttgaagaaaaaaaaatgtatgcccttaattttcagtttgaatttgtatttgcgtgttatttattttctttttttactcccaacgcatttttatgtaagtttacaaactgagagactacataatgtattcataggctattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="78755" stop="75893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78455" g_stop="78274" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78273" i_stop="78169" i_length="105">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78168" g_stop="77574" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="777" r_length="595" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77443" g_stop="77331" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="890" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77330" i_stop="77222" i_length="109">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77221" g_stop="77001" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="1111" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76714" g_stop="76193" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1632" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U315339" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1633</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78455" e_stop="78274"/>
          <exon e_start="78168" e_stop="77574"/>
          <exon e_start="77443" e_stop="77331"/>
          <exon e_start="77221" e_stop="77001"/>
          <exon e_start="76714" e_stop="76193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAATTAAGTGGCCAAGAAGTAGAGATGAGGTCTGGAAATTGAACATTCCTCATACGCACCTTGCAAATGAGAAATCTGACCAGAACTGGATGGTTGTGAAGGGTGAAAAGATAGTATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCAGATAAGTACATTGCGCTAATTGCCAACGTAAGGACTTCTTTTTCTTTCTCAGATATTGCAGAAATTTTAAAAAAGGGAACCTAGTAATATATGAAATGTTAAACTTTATCATACATGTAATTGTGATTGCAGATGCTGAACTTTACAAACAATAACTTGAACGATGAGGGAAGGATACGGACAGTTTTTGATGTTGGTTGCGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCCTCTGATATTATAGCAATGTCATTGGCACCAAATGATGTGCATCAGAATCAAATACAGTTTGCTTTAGAGAGAGGAATTCCTGCATACCTTGGTGTCCTTGGAACGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAACGTAAGTGCTTGCCTCTTCTGTCTTGTCAAATAGATGCATTTTTGTTGAGTTAAGGTTATAAGAAACTTGTAAGTTGCTTACTGTTAGTTTTCCTCAAAACCTTACTTCCTTATTGTCACCATTCTCTCAGATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACGGTAATTTGTTTTAGTAATATTGGTTAACTTGTGCCATTTGGTTCAACACACGAGCTTAAGTGCTCCATTACAAACTTGATGACTCCTTACTTTCTCGGTTTATCAACAGGACACTTGGAGGGAGAGGGTTGACCATTATTGGAGTCTGTTAAGTTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTGGTAGGTGGATAATCTTTTTCACTTTGTATAACCATGTTAGTCTGCTAGTTTTACTTTGTGGCCTAAATCTTTCGCCTTTAGGACATTGAACTGAGCATATTTATGAACATCTTAGTTTTTCTAGCCATTATGAAACTAATGTAGCTGTGCGTTGTTATTCAAGACTTTTAATGGTTGAGGAGCTCGGATATAGTTATCGGTCTTATATTTTCCCCAGTAGATGTTGATCATAGCCAAGGTGAACGTTCATTTGTAACATTAGTTGCACTTGCGTGCTTTTGTGCAGGTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAGAAAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTT</genome_strand>
        <mrna_strand>TGCCAATTAAGTGGCCAAGAAGTAGAGATGAGGTCTGGAAATTGAACATTCCTCATACGCACCTTGCAAATGAGAAATCTGACCAGAACTGGATGGTTGTGAAGGGTGAAAAGATAGTATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCAGATAAGTACATTGCGCTAATTGCCAAC.........................................................................................................ATGCTGAACTTTACAAACAATAACTTGAACGATGAGGGAAGGATACGGACAGTTTTTGATGTTGGTTGCGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCCTCTGATATTATAGCAATGTCATTGGCACCAAATGATGTGCATCAGAATCAAATACAGTTTGCTTTAGAGAGAGGAATTCCTGCATACCTTGGTGTCCTTGGAACGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGACCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC..................................................................................................................................ATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACG.............................................................................................................GACACTTGGAGGGAGAGGGTTGACCATTATTGGAGTCTGTTAAGTTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTGCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG..............................................................................................................................................................................................................................................................................................GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAG-AAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325489" ref_strand="+" ref_description="SGN-U325489        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G04430.1 | Symbol: None | dehydration-responsive protein-related, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr1:1198136-1201526 FORWARD | Aliases: F19P19.11, F19P19_11 (evalue: 3e-45, score=178) genbank/nr: gi|18390392|ref|NP_563706.1| dehydration-induced protein-related [Arabidopsis thaliana] gi|15450900|gb|AAK96721.1| Unknown protein [Arabidopsis thaliana] gi|17978687|gb|AAL47337.1| unknown protein [Arabidopsis thaliana](evalue: 2e-43, score=178)">
      <seq>cactctctctgtccctccatttattctctgcagaaaaacacacacacagtctctctcacgctctctcatcatattcattccctttttgtagtatttttctccacatttacatctccaggaactcattattgggttcccctctcattattcctaattcagatctattgcttcctcaacattgcagatcaacttttctcaagagtctaattgtttaatctccttagtcaagatacttgattttaattggtgccttatctagacaattatgatttcaaagagctgaagtagaaaagagaaagttaagtttttccacggacacaaaaaaaacccaaatgatgcgagggagatcagacggagcgcaaaagaagcgcttgtggacttttgtaggtattggggctgtcttggttgttttcctttacatgtattttggatccaagagcggtggtgagtctgctcttgagtatggcagccgttctttgaggaaattgggatcgtcttatttgggtggggatgataactctgatctcagcagcaggcaagaggagaagtttggactggaagatggtgatggtggcatcgtccctaagagttttccagtttgtgatgatcgacattcagaattaattccgtgtctggacagacatctcatttatcaaatgagattaaagttggatttgtcactgatggagcactatgaaagacattgccccttgccagaaagacgttataattgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="80978" stop="78291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80678" g_stop="80514" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79319" g_stop="78887" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="596" r_length="433" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78886" i_stop="78731" i_length="156">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78730" g_stop="78591" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="736" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U325489" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80678" e_stop="80514"/>
          <exon e_start="79319" e_stop="78887"/>
          <exon e_start="78730" e_stop="78591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCTGTAAGTTTTCTGCTTTTCTTTGATCTGATTCAATTTTTTGCTTACTCATTAATGTTTTTTGTATTGTGTTGTATGCTATTGTATCTTATACCCAATTTAGATAAATGAGCAATGAGTAAGGCAAGGCAACTTAAGTATACTTCAAAGGGGGTCTTTTTTTTGTGGTAAATATCTGATTGATCTCTGTTTTTTTTGTGAATGGTGGGTTTTTTAATATGTGATTCCAGATCTGTGTTTGTTTGTTTCATGTTTAGTGAATTATATATGTACCCTTTTCATGTTTTTACAAAAAAAGAGTGTTTTTAGGCCTTGACATTATGTTATTAAGCTTGAGTATAGTTGGTCTTATCATAACAGCCGAGACGGAGTCAAGATTTGAACTTTATGAGTTGTAAATTGTAGGATAGTGATATATGTTGTATGAACTCCCAAAAAGTGCACTACTTTTGGAGTATCTGACACAGTTGCTTGGACACACACATGTTGATAGTTTTGAAGAGTTTGAGCAATATAGCTGAAATCAGGTGCTTATGATTGGGTTGTGAATTTAAGTTTTGTGCATATTTAGTGAGTTTCTTAATAGAAGTTCAAGGTTTGATTAAAACTAGATTCGGGTTCTAGTTATTCCCCTGCATCACACTATACATGTCTTGATGGACTTTTGCTTTTATCTTTTAGTACACTTTTCTTTTCACAGATCATTTAATAGGGAGAATGTGATTAATTGTTCACATTAGGTAGGTTTTGTGGTGTTTGTTAACATTTCCTTTCACTAATGATCTGCTCTTGGTTCACAAAATAGCTTATGGTTATAGTCTTATAGACTGGCTGAGCTAGAAGTTTATATAAGGGGATTTAAAAAAAAAACTAGAATGTTACATTTGGGATTTTACGTGTGACCAAAAGCAAGTTTTTAACCCCTCTGCCAATGCACGGATTCAGCAGTTTATATACAACCCGAAAATCTCGTTTTCTATTTGCATATTATAATTTTATGTTGAAGGGGATTCAATTGAACCCCTTGTTTATACATAGCTGTATCCCAGGTTACAGACATGTGTATTCGAAAACTGAGTGATTCACACTCTAAACAGATTTGGAATAGCTGTGTGGCAAATGGAACTTTTTTTTCTTTCTTTTTCTGGGCTACACTACTTGATTAGTTTCTTATGGATAATGTATTTAATTTCACAGATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGACTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCAGTAAGTCAGTCTTTTTCCATTTCACAGCCCAATGTTATGTCACAAGGCTCTCCTCCAACCGCCAAGAGTGGTTAATTGGAAGAAAGGATGAGTTGCTGCATTTTGGTTGTTTCCTTTGTTTACCTTCTTAATTTTGTACTGGTCTTTCATTTGAAGGTTTGTGATGATCGACATTCAGAATTAATTCCGTGTCTGGACAGACATCTCATTTATCAAATGAGATTAAAGTTGGATTTGTCACTGATGGAGCACTATGAAAGACATTGCCCCTTGCCAGAAAGACGTTATAATTGTCT</genome_strand>
        <mrna_strand>CACTCTCTCTGTCCCTCCATTTATTCTCTGCAGA-AAA-ACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTCCCCTCTCATTATTCCTAATTCAGATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGGCTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCA............................................................................................................................................................GTTTGTGATGATCGACATTCAGAATTAATTCCGTGTCTGGACAGACATCTCATTTATCAAATGAGATTAAAGTTGGATTTGTCACTGATGGAGCACTATGAAAGACATTGCCCCTTGCCAGAAAGACGTTATAATTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312842" ref_strand="+" ref_description="SGN-U312842        Tomato 200607 #1 [162 ESTs aligned] arabidopsis/peptide: | Symbol: None | 12S seed storage protein (CRA1), nearly identical to SP:P15455 (Plant Mol Biol 11:805-820 (1988)); contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 | chr5:17773491-17775502 REVERSE | Aliases: None(evalue: 2e-93, score=340) genbank/nr: 11S(evalue: 8e-142, score=507)">
      <seq>ggcgattggcggccaaatcggccgaattgatcaacaacaaagaagagtaattaaaattatataaaaaaaaatggcttctaagtcctctttcctatgttttttcttttgttttcttgttgtttgccagatcagcttcgctcaaatttttgagcgacaacagatctggcaaaggctgcagcatcagcagcagcatcgggcacttaggtctaaaaccgagtgccagatagagcgtttgaacgctcaagaaccaaaccgtaggtttgagtccgaggcgggtgttgttgagttctgggatgctacccaagaacagtttgagtgtgccggagttcaggccgttaggcatgaaatccggcgcaacgggcttttgttgccttactatagcaacactccccaactcttctatattgtccaaggaagtggagttcattcaacaatattcccaggctgcgccgagacatttgaaacagagtcgccacttgatcgtagggcacagtcaggagatagagggcagagatcactcgatcgtcaccagaaagttaggcgttttcaggcgggagatattcttgcattgcctgctggagttactcattggacatacaatgatggtgaagaacctattattagtgtctcacttattgacacttctaacgttgccaatcaacttgacctcacattcaggaaattcttcctagctggaaatcctcaacgtggtgtacaacaacaagtattaggaagacaacaagagacaactagccaatatggaagaagaggctcagaacaagagaaaggagggaacatgttaagtggattcgatcctcaagttctctctgaggcattcaatgtagacgtggaggttatacgaaagatccaggaggaggcccccgagaggggtattattgtcctggctgagaaccttcggttcctcctcccggaggagaaagaagaagaagaagaagaaagagaatggcatagtagaagaggattccctcttaatggtttggaagaaactttttgcacaatgaagttgagggagaacattggccatcctactaggtctgacgtgtacaatccacgtggcggacgtataagcaccgtcaatagcaacagtctccctgtccttaactggctccagctcagcgctgagagaggtaccctctacaacaatgctatagtggcaccacattggaacttgaacgctcactcaatcatctatatcatccgtggaagcggtcggttccaagtggtagggaacgcgggaaagtccgtgtttgatgatcaagtgaggcaggggcaacttatcgtcgtgcctcaaaactttgctatagtgaagaaggcaggggagcaagggctcgattacatcgctttcaagaccaatgacaacgcgatgattagtccgttagccggacgtttatcggctatccgagccatgccagaggaagtcctcatgaactcataccaaatttcaaggcaagaggctaagagcttgaagtttaatagggatgaacttagtgtttttggaccaggagctaggtctagcaggcaatatgcctaaatgtaaaaaaactcaaataatgtagtgtctcaaaaatcctatcctttatgttaggatttgtttggtgagagaataataaaaaaatgcctcttgtaaaaggcaatttgacgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttgggggggggggggggggccccccccccccccccccaggggggggaaaaaaaaatttggggggggcttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="93169" stop="126186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93472" g_stop="93855" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="413" r_length="384" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94552" g_stop="94817" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="679" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95141" g_stop="95623" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="1162" r_length="483" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95917" g_stop="96420" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1163" r_stop="1666" r_length="504" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96421" i_stop="96683" i_length="263">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96684" g_stop="96750" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1667" r_stop="1733" r_length="67" r_score="0.672"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96751" i_stop="98922" i_length="2172">
            <donor d_prob="0.000" d_score="0.70"/>
            <acceptor a_prob="0.826" a_score="0.37"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98923" g_stop="98971" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1734" r_stop="1780" r_length="47" r_score="0.367"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98972" i_stop="99027" i_length="56">
            <donor d_prob="0.801" d_score="0.37"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99028" g_stop="99054" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1781" r_stop="1807" r_length="27" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U312842" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1780</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93472" e_stop="93855"/>
          <exon e_start="94552" e_stop="94817"/>
          <exon e_start="95141" e_stop="95623"/>
          <exon e_start="95917" e_stop="96420"/>
          <exon e_start="96684" e_stop="96750"/>
          <exon e_start="98923" e_stop="98971"/>
          <exon e_start="99028" e_stop="99054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAGGCAAGTCTACTACTTCTTTTTATTTTTAATTTATTTATATTAATTTAACTAATTCAGATTCGAATCGAGTAAAGTCTATTTGAGTGGTACAGTTAACCATCATGTTAACTCGAAACTTAAATATTTATTTGTTCTATTTTATATGACATACTACTTTTTCGTGTTGTTAAAGAGCTTTTTCTTCGATTGTGATTTTCTTTTTAAGTATTTTTTAGATATTCTTGATTTATTAATTGTTGTAATTTTCTTCTATTTTTTTAATTAGTTTTCAAATATACAAAATTTGTTTGAGAAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTTAAATATATAAAATTTATTTCAGAAAAATTGAAAGAAATCAATTTTTGGGACTACTCTTTATTTAGTATTCAAATATACTATATACATTTATTTAAGAAAATCTATTCTTGAATTCATTTTAAAAAAAATGAATTCATTTCAAAAAAATTGAGTTAGTTTCTTTTCTTCTTCTTTTTTTTAAAGAGTATTTTAACTCTCATACTCTGAATAATATCATAACATTCTAAATTCAAGTACAAACAAAATGTCTAAGTCACATATAAATTCTGAATCTGTCACTGTCACGCTACTCTACTACTCTTATGTAGTATAGCTAAGCTTGTGGTATAATTAAGTTAACATTTGTAATTTGATGAATGTAGGAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGGGTAATCAAAAAGAATCATACGTTTCTAAATAAAGATTCTTTCTTCGTTTTACAACATGATTTCACAAGTCTATGTTCATTCAATACTGTCGCGTAAATTGGGACGGGACGGGAGAAAGTAGTTATTTTCACATAGAGTTGTTTCAAGAAGGAAATTGGTAACCATTATATATGATGAAAATAGTATATATAAATAGTAAATCATTCATTTACAACATAATTTACTTTTTAGACACAAAATTAACATACCCCTACCTCATAGATAGAGAAGTTGTTTCTGATAAGACGAGCCTCGACTCAGCTAATTGATTTTCGATTTGCCAGAAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAACGTAAGTGGTAATCTCTATTAAAAAGTTTAACTTTTATATACTGACTATTTAGCTTTTCATATTAAAGAGTTTTAACTTTTATATACTTTTACTCTAAACTATAGTAGCTTGATATAAATGCATGTATTTCATCACTATGAATAACACTTAATTTGAGATAACTACACGTAGTTGTTCATACTAATTTGTCAATAGGAGTTAAAGTCATTTGAAAAAGAGGTTCTAATTGTGTTATTGTATATGGTCAGTGTACATAAGTTAAATTTCTCATGACATTTTTGCACGTATTACAGAATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCAATTTATCTTTTGAGTGAATCGAGAAATATATTTGATTGTTATCTTTCTGATACATATATCAAGCATGGCATTCTATTGATAATTCAAATTAGAATAATTAAATATCTAACTTGATTAGGTCTGTATAACATGACCGATCAATAGATTTAATTTTTTTTTCATACATTAAGTCCCTCAATATGTCTCCATCTGTATAATTAGCATTATTTCACATGCCAATAATGTATTTCCCACTATCTACTCATTAGTGGTAACTTTATACTATATGTTAAAACTAAAAACAAAGAAGTTCAAATATCAAAATAAATAAAATAATAAAAGAATTTGGTGGTCCTCCCCATATTTAATGGTCAAGAAAAAAACACATAAAAATTTTCCAACTTGTCATACTCCAAATTTATGATGAAACCCAAAATTGACCCCTCAAAGTTCTGGTAATTCTGAAAATTCCTCAGTCTTTATGAAAAAGTTGAACAAAAAGTCCATGTCAATGTCATCCTCCATTATTGTTGTACTATTAAACATGTCTAAGCTTTCAAATTCTTCACCATCCATATTAGTAACAAAGTCGAAATTGTTCTCTATCGTTAATTCATCCGTCCAGAAGCTCTCATCGATCTTGGCGAAATACTCCGATGAGTCCATTTCTTCTTGTTTAATCACTATTTGATCGTCGATCGTCGTATCGAAAGTACCACTTGATGATGAATTGGTTGTCATGATTGACGTCTCGCTAGACGATATTTCTGGTGAGTTAGGAGCATGCATGCAATTATTTATTTGATTAATTTTTTTGTGTCTTTTGAAGCTTCGAGGAGACTGACAATTTTTTAGCCTTTTCTTCAAGTGGGTGTGCCAAATATTTTTTATTTCATTATCCGTTCTTCCCGGTAATCTTGCTGCTATTGCTGACCATCTGAAGAAAAAAAAATATTTTTTAATTAGAATAAAAATATAATATAAAAATCTTTCTAAATAATATATATATATATATGTATTATCGCATTGATATTTGAGATTTTACTTAAATATATTATACTTATAATGTCAAATCCAGAGAAATAGGGATCTTTGTCACATCTACAGTTATATTTTTAATTACAATAAATGCATATATTTCTATTGTATAGATTTTCTAATAGAATTATAATTAATATTCTATTTACCAACTTATCTAAACGAATCTTTTCACAATTTTTTTTAAAAAAAGAGATGGGCATAAGGACATGTTATATCAAAGTGTGTGTAGATAACTCTGCATTTTGAATCCCTTATTCAAAAATTTTACAAAAATATTAAAAATTAGAGAAGGACTATTACATCTTCACTAAATAATAAATTTGTGCTTAATTCTATTAACAATAGAATAATGATAAATTATTTTTAAAAAATTATATTAGCTATCGATACTATATGTAGATATATATATTAGCAATAAATTTCATAACTAATTACTGACCTATTTCCAAGAATTTCATGTAAATTGATGATATTATCTTCTTCTTCTTTGGTGAAATTTCCCCTCTTAATATGTGGACTCAAATAATTCATCCACCTCAATCTGCAACTTTTTCCACATCTCAATAATCCTGAATTAAAAAAAAAAAAAGGCAAAATTAATATGAGAAATGAGTTTTATTTTAAAAAATTTGAAGAAAAATATAAATCAAAAATAGGTTTTTATTCTTTAAAAGCATCTTTCTTTTTTCCTTCCAATTCCATCATATTTTTCTAATAATTTCTTCATCAATTTTTTTAGTAAACATAATAAGCCAATAAAATACTCCGTATAAGCAAAACATTTTATTTTTAAAAAAAACGAAAAATTGCAGTTCTAAATATAACATATTATTTGTGTTAAATGTAGTTTCGGAGAACAACAATTTGTTTTTAATAAATTATTTTTAAAAAATACTTGTTACTAATATTAGATCTAACAATTTATGCTTGACCAAAATTCTCAAAGTGCTACCACAAAAAACTTCTCTACTACATAACGTCACGTAAATTGAAATAGATAAAAAATATATATAGTAGTTTTTGAGCAATTACCAGCTTGTCTAGGGAGTGCGCGCCAATTGCCATGGCCATTTTTGTTAATGTAAGAGATGAGAATTTGGTCTTCTTCGTGATCCCATGACCCTTTCTTCAAGCTCGTTTTCTCACAAGAAGGTGCTCTGTCCATTTTTCTTTTTTCTCAATCGTTTTTTTTTAAACAGACTAAAAAAAATAACTTTAACTTCTTTCTATATCTTTTTTTTTTCTCCAAATTTTTGTGTGTGAGAGAAATTATTAGAAGTCTCACTCTTCAGTTTCAGTGGAAAGAAAGAGAGAAAATGGTTTGTGTGTTTAGTGAAGGCTAAGAATGGGTATTTATATTAACATATATTATGAAAGATATAAAAAAAAATAGTCAAAGGTCAAAAAGTTGTTTATTGCAATTTCCATGAAGTTGTGTTTGTTTTTGTATTTATTCTCATTAATAATAATTAACATAATTAGATATTGTATAATGCAAGCTCGTAGACCATAAAAAAGGGATGGAGAAAATGTGCGTTTTATTTCATGTCTTACGTATTTCTTACGTAGTTTTTTTTAGCCATATCAAATTTATTTTGTGCTATTTAAAAAATA</genome_strand>
        <mrna_strand>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGTGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCTTCTATATTGTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCAGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG...................................................................................................................................................................................................................................................................................................................................AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTATTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC.....................................................................................................................................................................................................................................................................................................AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGACGTTCA.......................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGGGGGGGC--CCCCCCCCCCCCCCCCCAGGGGGGGGAAAAAAA........................................................AATTTGGGGGGGGCTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325449" ref_strand="+" ref_description="SGN-U325449        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | myb family transcription factor (MYB14), similar to myb-related transcription factor GI:1370140 from (Lycopersicon esculentum) | chr2:13293798-13295252 REVERSE | Aliases: F16D14.2(evalue: 2e-63, score=239) genbank/nr: gi|6552361|dbj|BAA88222.1| myb-related transcription factor LBM2 [Nicotiana tabacum](evalue: 3e-79, score=298)">
      <seq>tttctttccactgaaactgaagagtgagacttctaataatttctctcacccacaaaaatttggagaaaaaaaaagaagttaaaaagttattttttttagtctgtttcaaaaaaatgattgagaaaaaaaaatgggcagagcaccttgttgtgagaaaatgagcttgaagaaagggccatgggatcacgaagaagaccaaattctcatctcttatattaacaaaaatggccatggcaattggcgcgcgctccctagacaagctggattattgagatgtggaaaaagttgcagattgaggtggatgaattatttgagtccacatattaagaggggaaatttcaccaaagaagaagaagataatatcatcaatttacatgaaattcttggcaatagatggtcagcaatagcagcaagattaccgggaagaacggataatgaaataaaaaatatttggcacacccacttgaagaaaaggctaaaaaattgtcagtctcctcgaaacttcaaaagacacaataaaattaatcaaataaataattgcatgcatgctcctaactcaccagaaatatcgtctagcgagacgtcaatcatgacaaccaattcatcatcaagtggtactttcgatacgacgatcgacgatcaaatagtgattaaacaagaagaaatggactcatcggagtatttcgccaagatcgatgagagcttttggacggatgaattaacgatagagaacaatttcgactttgttactaatatggatggtgaagaatttgaaagcttagacatgtttaatagtacaacaataatggaggatgacattgacatggactttttgttcaactttttcataaagactgaggaattttcagaattaccagaactttgaggggtcaattttgggtttcatcataaatttggagtatgacaagttggaaaatttttatgtgtttttttctagaccattaaatatggggaggacctccaaattcttttattattttatttattttgatatttgaacttctttgtttttagttttaacatatagtataaagtttccactaatgagtagatagtgggaaatacattattggcatgtgaaataatgctaattatacagatggagacatattgagggtcttaatgtatgaaaaaacaattaaatctattgatcggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="-" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="99048" stop="96250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98748" g_stop="98473" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98472" i_stop="98010" i_length="463">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98009" g_stop="97880" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97879" i_stop="97337" i_length="543">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97336" g_stop="96550" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="1180" r_length="787" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="-" ref_id="SGN-U325449" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>1193</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98748" e_stop="98473"/>
          <exon e_start="98009" e_stop="97880"/>
          <exon e_start="97336" e_stop="96550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACACACAAAAATTTGGAGAAAAAAAAAAGATATAGAAAGAAGTTAAAGTTATTTTTTTTAGTCTGTTTAAAAAAAAACGATTGAGAAAAAAGAAAAATGGACAGAGCACCTTCTTGTGAGAAAACGAGCTTGAAGAAAGGGTCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTACATTAACAAAAATGGCCATGGCAATTGGCGCGCACTCCCTAGACAAGCTGGTAATTGCTCAAAAACTACTATATATATTTTTTATCTATTTCAATTTACGTGACGTTATGTAGTAGAGAAGTTTTTTGTGGTAGCACTTTGAGAATTTTGGTCAAGCATAAATTGTTAGATCTAATATTAGTAACAAGTATTTTTTAAAAATAATTTATTAAAAACAAATTGTTGTTCTCCGAAACTACATTTAACACAAATAATATGTTATATTTAGAACTGCAATTTTTCGTTTTTTTTAAAAATAAAATGTTTTGCTTATACGGAGTATTTTATTGGCTTATTATGTTTACTAAAAAAATTGATGAAGAAATTATTAGAAAAATATGATGGAATTGGAAGGAAAAAAGAAAGATGCTTTTAAAGAATAAAAACCTATTTTTGATTTATATTTTTCTTCAAATTTTTTAAAATAAAACTCATTTCTCATATTAATTTTGCCTTTTTTTTTTTTTAATTCAGGATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGAAATAGGTCAGTAATTAGTTATGAAATTTATTGCTAATATATATATCTACATATAGTATCGATAGCTAATATAATTTTTTAAAAATAATTTATCATTATTCTATTGTTAATAGAATTAAGCACAAATTTATTATTTAGTGAAGATGTAATAGTCCTTCTCTAATTTTTAATATTTTTGTAAAATTTTTGAATAAGGGATTCAAAATGCAGAGTTATCTACACACACTTTGATATAACATGTCCTTATGCCCATCTCTTTTTTTAAAAAAAATTGTGAAAAGATTCGTTTAGATAAGTTGGTAAATAGAATATTAATTATAATTCTATTAGAAAATCTATACAATAGAAATATATGCATTTATTGTAATTAAAAATATAACTGTAGATGTGACAAAGATCCCTATTTCTCTGGATTTGACATTATAAGTATAATATATTTAAGTAAAATCTCAAATATCAATGCGATAATACATATATATATATATATTATTTAGAAAGATTTTTATATTATATTTTTATTCTAATTAAAAAATATTTTTTTTTCTTCAGATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAGCTTCAAAAGACACAAAAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAGAAATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTCTGGACGGATGAATTAACGATAGAGAACAATTTCGACTTTGTTACTAATATGGATGGTGAAGAATTTGAAAGCTTAGACATGTTTAATAGTACAACAATAATGGAGGATGACATTGACATGGACTTTTTGTTCAACTTTTTCATAAAGACTGAGGAATTTTCAGAATTACCAGAACTTTGAGGGGTCAATTTTGGGTTTCATCATAAATTTGGAGTATGACAAGTTGGAAAATTTTTATGTGTTTTTTTCTTGACCATTAAATATGGGGAGGACCACCAAATTCTTTTATTATTTTATTTATTTTGATATTTGAACTTCTTTGTTTTTAGTTTTAACATATAGTATAAAGTTACCACTAATGAGTAGATAGTGGGAAATACATTATTGGCATGTGAAATAATGCTAATTATACAGATGGAGACATATTGAGGGACTTAATGTATGAAAAAAAAATTAAATCTATTGATCGGTCAT</genome_strand>
        <mrna_strand>TTTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACCCACAAAAATTTGGAGAAAAAAAAA-G--A-AG--TTAA---AAAGTTATTTTTTTTAGTCTGTTT-CAAAAAAATGATTGAG--AAAA-AAAAATGGGCAGAGCACCTTGTTGTGAGAAAATGAGCTTGAAGAAAGGGCCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTATATTAACAAAAATGGCCATGGCAATTGGCGCGCGCTCCCTAGACAAGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGCAATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAACTTCAAAAGACACAATAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAGAAATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTTTGGACGGATGAATTAACGATAGAGAACAATTTCGACTTTGTTACTAATATGGATGGTGAAGAATTTGAAAGCTTAGACATGTTTAATAGTACAACAATAATGGAGGATGACATTGACATGGACTTTTTGTTCAACTTTTTCATAAAGACTGAGGAATTTTCAGAATTACCAGAACTTTGAGGGGTCAATTTTGGGTTTCATCATAAATTTGGAGTATGACAAGTTGGAAAATTTTTATGTGTTTTTTTCTAGACCATTAAATATGGGGAGGACCTCCAAATTCTTTTATTATTTTATTTATTTTGATATTTGAACTTCTTTGTTTTTAGTTTTAACATATAGTATAAAGTTTCCACTAATGAGTAGATAGTGGGAAATACATTATTGGCATGTGAAATAATGCTAATTATACAGATGGAGACATATTGAGGGTCTTAATGTATGAAAAAACAATTAAATCTATTGATCGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8WMcY0/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321720" ref_strand="+" ref_description="SGN-U321720        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | inorganic phosphate transporter (PHT3), identical to inorganic phosphate transporter (Arabidopsis thaliana) GI:2780347 | chr5:17426752-17428442 FORWARD | Aliases: MWF20.5, MWF20_5(evalue: 0, score=786) genbank/nr: gi|2570525|gb|AAB82147.1| inorganic phosphate transporter [Lycopersicon esculentum] (evalue: 0, score=1005)">
      <seq>agaaagtgcacaattttttgaaccaattttaggcattatggctgtgggggataatgataataataatttacaagtgcttaatgcacttgatttggctaaaactcaactttaccattttacagctattgttattgctggaatgggattttttactgatgcttatgatctgtttagtatttctcttgtcactaaattgcttgggcgtttatactataccaaaccggatcttttgaaacccggaacactccctccggccgtatcagcctcggtcacgggtgttgcccttgttggcaccctagccggccagctattctttggctggctaggtgacaaaatgggacgaaaaaaggtgtatggtatgactttagttctcatggttgtgtgttctgttgcttcagggctctcctttggtagtacacctaagggtgttatgactacattgtgtttttttaggttttggcttggatttggtattggtggtgattaccctttgtccgctaccatcatgtctgaatacgctaacaaaaagacacgtggtgcattcatagcggcggtattcgctatgcaaggttttggaattttgtttagtgggatagttgcacttatcacagcagctggattcgatcacgcgtatagatccccaactttcgaggaaaatgctgctctatctactgtaccacaatcggactacatttggcgtatcattctcatgtttggatcattgccagctgccctcacttactactggcgcatgaaaatgcccgaaacagcacgttacacggctctagtcgcgaaagacgcgaagagagccgcgcaggacatgggtaaggtactacaggtggaaattgaaagcgaggaagccaaaatcgaacaaatttcaaggaatgaaactaatcaattcggtctgttttcgtgggaatttgttcgacggcacggattgcatttattcggaacgtgttccacgtggtttttattagatattgctttctacagtcagaatttgtttcagaaggatgtgttctccgccgtcggatggatccctaaagctccaacaatgaacgctgttcaggaagtttacaaaattgcgagagcgcaaacattaattgcgctctgtagcacggtgccagggtactggttcaccgtggcgtttattgacattattggaaggttcgctatccaattgatgggattcttcttcatgacagtgtttatgtttgcgattgccatcccttaccatcattggacactggaggctaaccgcattggattcattgtaatgtattcgcttacatttttctttgcgaattttgggcctaacgctactacatttgtggtcccggcggagattttcccagcgaggcttcgatcaacatgtcatggaatttcagcggctgcaggtaaggctggagctatagtgggagcgtatgggttcttatacgctgcactcgtgccgaattcggcacgaggaacagatgcaggatacccagcgggaattggaataaaaaactcgctaattgttctcggctgtatcaatgcacttggaatgttatgtacattttgtgtgccagagccaaaaggaaaatctctagaggaagcatcacaagaaactataactggagaagcatgagatcattaaatgattggaaaatcactttctttttttttaatgtttttgttggtttaatttcagttttctttgtattgtgtaagcttgtttgttgcaagtttttattgtattatttttttgtggccaagtgtgttattgtaaaatggttttgctatttatttatattataaataaaaaaattgtttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0207A03-NEEWE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0207A03.1" temp_strand="+" temp_description="C04HBa0207A03.1  CU468268.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0207A03 upload_account_name:france">
        <position start="116565" stop="118975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116865" g_stop="118689" g_length="1825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1831" r_length="1831" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0207A03.1" gen_strand="+" ref_id="SGN-U321720" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1825</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0207A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116865" e_stop="118689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGTGCACAATTTTTTGAACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCAC-AAAGTAAAGATCCAAAC-A-AAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCAC--T-TTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGATATGAC</genome_strand>
        <mrna_strand>AGAAAGTGCACAATTTTTTGAACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACTCGTGCCGAATTCGGCACGAGGAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTCGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTCTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="273" PGL_stop="8536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3954" e_stop="4683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="3954" e_stop="4683" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3954" stop="4683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3959" stop="4394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGACCAAAGTTTTCTAAAGATATCAGTATATGTTCAAGTCCAAGAACAAGGTTGAACGAAGTGGGAAATTAGTTGATGAGAAAAATTTGTTCTACTATAAGCTTTGTAGAAATAATTTCCACATATCCTGGAGAATGCGGTGACACATTTTGCCAAAACTAGATGCCTTTCTTGCCATCATTTTCTTGTACTGAAAAATAATTATTTGTCCAAAGTAAATGAATTGAAGGAAGGACTAGATGTCCTGAAAATTGTCAATATCAGAAAATATTATTAGAGTGCAATTATTAGCTATTCCTTTCTGGTTAGGCGATAGAATCTTGTTATGAGGTTCATTATGTGACTCAATAATTGAAATCTGGCCCATGATGAACGTCTGAATATTTTGTTCTTTTAGATGAATTTTTTGTACTTCAGTGCTTCCTGCTTGTAATGAATTCTTAACTGATGAACATTGGGAGATTGTTTGCTTAAAGGATTGTAATTTTTTCCAGCAAGGTGTTTTAGTGGCCGTGGAACATTTGTATTTGGATAGAGCTAACTGCAGAAGGGTCTGAGATTGGTTTCTTTTCAAGATCTTTGGGATGTAGAAGTCTTTTAGTAAAGCAATAGCCTCCTTTCATGATATCGATGTTTTCTATATCCACCCAGATTATAGGGTTTTATTTATTTGATGCAGCTCTTTCATAAGGTTGTGCACTTGTAGTCATCTTCCATATAACCTTCTT</gDNA_template>
            <first_frame> I  D  Q  S  F  L  K  I  S  V  Y  V  Q  V  Q  E  Q  G  *  T  K  W  E  I  S  *  *  E  K  F  V  L  L  *  A  L  *  K  *  F  P  H  I  L  E  N  A  V  T  H  F  A  K  T  R  C  L  S  C  H  H  F  L  V  L  K  N  N  Y  L  S  K  V  N  E  L  K  E  G  L  D  V  L  K  I  V  N  I  R  K  Y  Y  *  S  A  I  I  S  Y  S  F  L  V  R  R  *  N  L  V  M  R  F  I  M  *  L  N  N  *  N  L  A  H  D  E  R  L  N  I  L  F  F  *  M  N  F  L  Y  F  S  A  S  C  L  *  *  I  L  N  *  *  T  L  G  D  C  L  L  K  G  L  *  F  F  P  A  R  C  F  S  G  R  G  T  F  V  F  G  *  S  *  L  Q  K  G  L  R  L  V  S  F  Q  D  L  W  D  V  E  V  F  *  *  S  N  S  L  L  S  *  Y  R  C  F  L  Y  P  P  R  L  *  G  F  I  Y  L  M  Q  L  F  H  K  V  V  H  L  *  S  S  S  I  *  P  S  </first_frame>
            <second_frame>  *  T  K  V  F  *  R  Y  Q  Y  M  F  K  S  K  N  K  V  E  R  S  G  K  L  V  D  E  K  N  L  F  Y  Y  K  L  C  R  N  N  F  H  I  S  W  R  M  R  *  H  I  L  P  K  L  D  A  F  L  A  I  I  F  L  Y  *  K  I  I  I  C  P  K  *  M  N  *  R  K  D  *  M  S  *  K  L  S  I  S  E  N  I  I  R  V  Q  L  L  A  I  P  F  W  L  G  D  R  I  L  L  *  G  S  L  C  D  S  I  I  E  I  W  P  M  M  N  V  *  I  F  C  S  F  R  *  I  F  C  T  S  V  L  P  A  C  N  E  F  L  T  D  E  H  W  E  I  V  C  L  K  D  C  N  F  F  Q  Q  G  V  L  V  A  V  E  H  L  Y  L  D  R  A  N  C  R  R  V  *  D  W  F  L  F  K  I  F  G  M  *  K  S  F  S  K  A  I  A  S  F  H  D  I  D  V  F  Y  I  H  P  D  Y  R  V  L  F  I  *  C  S  S  F  I  R  L  C  T  C  S  H  L  P  Y  N  L  L </second_frame>
            <third_frame>   R  P  K  F  S  K  D  I  S  I  C  S  S  P  R  T  R  L  N  E  V  G  N  *  L  M  R  K  I  C  S  T  I  S  F  V  E  I  I  S  T  Y  P  G  E  C  G  D  T  F  C  Q  N  *  M  P  F  L  P  S  F  S  C  T  E  K  *  L  F  V  Q  S  K  *  I  E  G  R  T  R  C  P  E  N  C  Q  Y  Q  K  I  L  L  E  C  N  Y  *  L  F  L  S  G  *  A  I  E  S  C  Y  E  V  H  Y  V  T  Q  *  L  K  S  G  P  *  *  T  S  E  Y  F  V  L  L  D  E  F  F  V  L  Q  C  F  L  L  V  M  N  S  *  L  M  N  I  G  R  L  F  A  *  R  I  V  I  F  S  S  K  V  F  *  W  P  W  N  I  C  I  W  I  E  L  T  A  E  G  S  E  I  G  F  F  S  R  S  L  G  C  R  S  L  L  V  K  Q  *  P  P  F  M  I  S  M  F  S  I  S  T  Q  I  I  G  F  Y  L  F  D  A  A  L  S  *  G  C  A  L  V  V  I  F  H  I  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0207A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="273" e_stop="373"/>
            <exon e_start="774" e_stop="908"/>
            <exon e_start="994" e_stop="1164"/>
            <exon e_start="1932" e_stop="2084"/>
            <exon e_start="2190" e_stop="2258"/>
            <exon e_start="2355" e_stop="2471"/>
            <exon e_start="3015" e_stop="3089"/>
            <exon e_start="3232" e_stop="3309"/>
            <exon e_start="3387" e_stop="3482"/>
            <exon e_start="3656" e_stop="3705"/>
            <exon e_start="4781" e_stop="4835"/>
            <exon e_start="5107" e_stop="5238"/>
            <exon e_start="6436" e_stop="6483"/>
            <exon e_start="6583" e_stop="6741"/>
            <exon e_start="8130" e_stop="8536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.856" acc_prob="0.536" e_score="0.990"/>
          <exon-intron don_prob="0.946" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.310" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="273" e_stop="373" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.856" acc_prob="0.536">
            <gDNA_intron_boundary i_start="374" i_stop="773" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="774" e_stop="908" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.996">
            <gDNA_intron_boundary i_start="909" i_stop="993" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="994" e_stop="1164" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.954">
            <gDNA_intron_boundary i_start="1165" i_stop="1931" i_length="767"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1932" e_stop="2084" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="2085" i_stop="2189" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2190" e_stop="2258" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2259" i_stop="2354" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="2355" e_stop="2471" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2472" i_stop="3014" i_length="543"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3015" e_stop="3089" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3090" i_stop="3231" i_length="142"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3232" e_stop="3309" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.310" acc_prob="0.919">
            <gDNA_intron_boundary i_start="3310" i_stop="3386" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3387" e_stop="3482" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.861" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3483" i_stop="3655" i_length="173"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3656" e_stop="3705" e_length="50"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="3706" i_stop="4780" i_length="1075"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="4781" e_stop="4835" e_length="55"/>
          </exon>
          <intron i_serial="11" don_prob="0.856" acc_prob="0.976">
            <gDNA_intron_boundary i_start="4836" i_stop="5106" i_length="271"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="5107" e_stop="5238" e_length="132"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.830">
            <gDNA_intron_boundary i_start="5239" i_stop="6435" i_length="1197"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="6436" e_stop="6483" e_length="48"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6484" i_stop="6582" i_length="99"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="6583" e_stop="6741" e_length="159"/>
          </exon>
          <intron i_serial="14" don_prob="0.663" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6742" i_stop="8129" i_length="1388"/>
          </intron>
          <exon e_serial="15" e_score="0.980">
            <gDNA_exon_boundary e_start="8130" e_stop="8536" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="273" stop="373"/>
              <exon start="774" stop="908"/>
              <exon start="994" stop="1164"/>
              <exon start="1932" stop="2084"/>
              <exon start="2190" stop="2258"/>
              <exon start="2355" stop="2471"/>
              <exon start="3015" stop="3089"/>
              <exon start="3232" stop="3309"/>
              <exon start="3387" stop="3482"/>
              <exon start="3656" stop="3705"/>
              <exon start="4781" stop="4835"/>
              <exon start="5107" stop="5238"/>
              <exon start="6436" stop="6483"/>
              <exon start="6583" stop="6741"/>
              <exon start="8130" stop="8536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTTCTCTTCGACCCCTTAAGATTTAGCAGAACAAATCTGTTAGCAATGGCGGCGTCTTCAGCTATAGCTTCAAGTTCTACAACTTTCATCAATAAG : AAAGATGTGGGTCTATCTGCCTTCTCTTCACAAGCTTCATTTTCCGTTCAAACTGCTCGGAAAAGGATATCCAAGAGAATTGTTTCTGTGATGACACCTCAGCAGACTGAAAGAAAACCTGCCACAACTGGATCA : GTAAAGACTGGTATGACTATGACTGAGAAGATATTAGCTAAGGCTTCTGATAAGCCTGATGTGAGCCCTGGTGATAATGTCTGGGTGAATGTTGATGTTCTGATGACTCATGATGTTTGTGGCCCTGGCTCTATTGGAATTTTCAAGAAAGAGTTTGGACAGAATGCTAAG : GTCTGGGATCGTGAAAAGCTTGTCATTATACCTGACCATTACATATTCACAACCGACGAACGAGCAAACCGTAACGTGGATATCTTGAGGGATTTCTGCAATGAACAAAATATTAAGTACTTCTATGACATTAAAGATTTGGGGAACTTCCGT : GCTAATCCTGATTACAAGGGTGTCTGCCACGTTGCTCTTGCACAAGAAGGTCACTGCAGACCTGGAGAG : GTTTTGCTGGGTACAGACTCCCACACATGTACTGCTGGAGCTTTTGGGCAATTCGCCACTGGAATTGGCAATACTGATGCAGGTTTTGTGTTGGGTACTGGCAAGATTCTGCTCAAG : GTGCCTCCAACTTTGAGATTTGTAATGGATGGTGAAATGCCTGATTACTTGCTTGCTAAGGACTTAATTTTGCAA : ATTATTGGTGAAATTTCAGTGGCTGGTGCTACTTATAAAGCAATGGAGTTTGTTGGCACGACAGTTGAAAGCTTGACT : ATGGAAGAAAGAATGACATTATGCAACATGGTTGTTGAAGCTGGTGGAAAAAATGGTGTCATCCCAGCTGATAAAACAACATATGACTACCTTGAG : GGAAGGACTTCTGTGCCCTATGAACCTGTTTATAGTGATGAAGGAGCCAG : ATATCTTAAGGAGTACAGATTTGATGTTTCCAAGTTGGAGCCCTTAGTGGCTAAG : CCTCATTCTCCTGATAATCGTGCTTTGGCAAGAGAATGCAAAGATGTCAAAATCGATAGAGTATATATTGGATCTTGTACTGGTGGAAAGACAGAGGACTTCATGGCTGCTGCAAAAGTTTTTCTAGCTTCC : GGAAAGAAGGTAAAGGTTCCCACTTTCCTTGTTCCTGCTACCCAAAAG : GTATGGATGGATGTATATAGCCTCCCAGTTCCAGGATCAGGTGGCAAAACATGTTCCCAGATTTTTGAGGAGGCAGGTTGCGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAAAGACACTTATGCACGCATGAATGAAGCTCAG : GTCTGTGTATCAACCACGAATAGGAACTTCCCTGGTCGAATGGGACACAAGGAAGGCCAGATTTATCTTGCATCTCCGTATACAGCTGCAGCATCAGCATTGACCGGTTATGTCACTGATCCCCGAGAGTTTTTGCAGTGAAGTTCCTCGATGACCTCGTTTTAGGAGTTTGGATTATGTTGTACACTAACAGATGAGTGAATCTTGAGCTTTTGATGCTTATATATTCCTGAGAAAGGTCGCGCTCGATGTGTTTCTCTTTTTTCTCTTTACTCCCAAGAAATGAATGCTCTTCTGCATTAAAATGAGAACTCCTTGATTCCTAATTTCTGTCTTCTTTGTTGTATTCTTGGAGTCTTATTGTTAAAAGCATTGAAATAAGAATTTGTTTCTGGAAATAATTACTC</gDNA_template>
            <first_frame> F  F  F  S  S  T  P  *  D  L  A  E  Q  I  C  *  Q  W  R  R  L  Q  L  *  L  Q  V  L  Q  L  S  S  I  R :   K  M  W  V  Y  L  P  S  L  H  K  L  H  F  P  F  K  L  L  G  K  G  Y  P  R  E  L  F  L  *  *  H  L  S  R  L  K  E  N  L  P  Q  L  D  Q :   *  R  L  V  *  L  *  L  R  R  Y  *  L  R  L  L  I  S  L  M  *  A  L  V  I  M  S  G  *  M  L  M  F  *  *  L  M  M  F  V  A  L  A  L  L  E  F  S  R  K  S  L  D  R  M  L  R :   S  G  I  V  K  S  L  S  L  Y  L  T  I  T  Y  S  Q  P  T  N  E  Q  T  V  T  W  I  S  *  G  I  S  A  M  N  K  I  L  S  T  S  M  T  L  K  I  W  G  T  S  V :   L  I  L  I  T  R  V  S  A  T  L  L  L  H  K  K  V  T  A  D  L  E  R :   F  C  W  V  Q  T  P  T  H  V  L  L  E  L  L  G  N  S  P  L  E  L  A  I  L  M  Q  V  L  C  W  V  L  A  R  F  C  S  R :   C  L  Q  L  *  D  L  *  W  M  V  K  C  L  I  T  C  L  L  R  T  *  F  C  K :   L  L  V  K  F  Q  W  L  V  L  L  I  K  Q  W  S  L  L  A  R  Q  L  K  A  *  L :   W  K  K  E  *  H  Y  A  T  W  L  L  K  L  V  E  K  M  V  S  S  Q  L  I  K  Q  H  M  T  T  L  R :   E  G  L  L  C  P  M  N  L  F  I  V  M  K  E  P   : D  I  L  R  S  T  D  L  M  F  P  S  W  S  P  *  W  L  S :   L  I  L  L  I  I  V  L  W  Q  E  N  A  K  M  S  K  S  I  E  Y  I  L  D  L  V  L  V  E  R  Q  R  T  S  W  L  L  Q  K  F  F  *  L  P :   E  R  R  *  R  F  P  L  S  L  F  L  L  P  K  R :   Y  G  W  M  Y  I  A  S  Q  F  Q  D  Q  V  A  K  H  V  P  R  F  L  R  R  Q  V  A  I  H  L  Q  V  L  V  V  V  L  V  W  V  A  L  K  T  L  M  H  A  *  M  K  L  R :   S  V  Y  Q  P  R  I  G  T  S  L  V  E  W  D  T  R  K  A  R  F  I  L  H  L  R  I  Q  L  Q  H  Q  H  *  P  V  M  S  L  I  P  E  S  F  C  S  E  V  P  R  *  P  R  F  R  S  L  D  Y  V  V  H  *  Q  M  S  E  S  *  A  F  D  A  Y  I  F  L  R  K  V  A  L  D  V  F  L  F  F  L  F  T  P  K  K  *  M  L  F  C  I  K  M  R  T  P  *  F  L  I  S  V  F  F  V  V  F  L  E  S  Y  C  *  K  H  *  N  K  N  L  F  L  E  I  I  T  </first_frame>
            <second_frame>  S  S  S  L  R  P  L  K  I  *  Q  N  K  S  V  S  N  G  G  V  F  S  Y  S  F  K  F  Y  N  F  H  Q  *   : E  R  C  G  S  I  C  L  L  F  T  S  F  I  F  R  S  N  C  S  E  K  D  I  Q  E  N  C  F  C  D  D  T  S  A  D  *  K  K  T  C  H  N  W  I   : S  K  D  W  Y  D  Y  D  *  E  D  I  S  *  G  F  *  *  A  *  C  E  P  W  *  *  C  L  G  E  C  *  C  S  D  D  S  *  C  L  W  P  W  L  Y  W  N  F  Q  E  R  V  W  T  E  C  *   : G  L  G  S  *  K  A  C  H  Y  T  *  P  L  H  I  H  N  R  R  T  S  K  P  *  R  G  Y  L  E  G  F  L  Q  *  T  K  Y  *  V  L  L  *  H  *  R  F  G  E  L  P   : C  *  S  *  L  Q  G  C  L  P  R  C  S  C  T  R  R  S  L  Q  T  W  R   : G  F  A  G  Y  R  L  P  H  M  Y  C  W  S  F  W  A  I  R  H  W  N  W  Q  Y  *  C  R  F  C  V  G  Y  W  Q  D  S  A  Q   : G  A  S  N  F  E  I  C  N  G  W  *  N  A  *  L  L  A  C  *  G  L  N  F  A   : N  Y  W  *  N  F  S  G  W  C  Y  L  *  S  N  G  V  C  W  H  D  S  *  K  L  D   : Y  G  R  K  N  D  I  M  Q  H  G  C  *  S  W  W  K  K  W  C  H  P  S  *  *  N  N  I  *  L  P  *   : G  K  D  F  C  A  L  *  T  C  L  *  *  *  R  S  Q  :  I  S  *  G  V  Q  I  *  C  F  Q  V  G  A  L  S  G  *   : A  S  F  S  *  *  S  C  F  G  K  R  M  Q  R  C  Q  N  R  *  S  I  Y  W  I  L  Y  W  W  K  D  R  G  L  H  G  C  C  K  S  F  S  S  F   : R  K  E  G  K  G  S  H  F  P  C  S  C  Y  P  K   : G  M  D  G  C  I  *  P  P  S  S  R  I  R  W  Q  N  M  F  P  D  F  *  G  G  R  L  R  Y  T  C  K  S  *  L  W  C  L  F  G  W  P  *  R  H  L  C  T  H  E  *  S  S   : G  L  C  I  N  H  E  *  E  L  P  W  S  N  G  T  Q  G  R  P  D  L  S  C  I  S  V  Y  S  C  S  I  S  I  D  R  L  C  H  *  S  P  R  V  F  A  V  K  F  L  D  D  L  V  L  G  V  W  I  M  L  Y  T  N  R  *  V  N  L  E  L  L  M  L  I  Y  S  *  E  R  S  R  S  M  C  F  S  F  F  S  L  L  P  R  N  E  C  S  S  A  L  K  *  E  L  L  D  S  *  F  L  S  S  L  L  Y  S  W  S  L  I  V  K  S  I  E  I  R  I  C  F  W  K  *  L  L </second_frame>
            <third_frame>   L  L  L  F  D  P  L  R  F  S  R  T  N  L  L  A  M  A  A  S  S  A  I  A  S  S  S  T  T  F  I  N  K  :  K  D  V  G  L  S  A  F  S  S  Q  A  S  F  S  V  Q  T  A  R  K  R  I  S  K  R  I  V  S  V  M  T  P  Q  Q  T  E  R  K  P  A  T  T  G  S  :  V  K  T  G  M  T  M  T  E  K  I  L  A  K  A  S  D  K  P  D  V  S  P  G  D  N  V  W  V  N  V  D  V  L  M  T  H  D  V  C  G  P  G  S  I  G  I  F  K  K  E  F  G  Q  N  A  K  :  V  W  D  R  E  K  L  V  I  I  P  D  H  Y  I  F  T  T  D  E  R  A  N  R  N  V  D  I  L  R  D  F  C  N  E  Q  N  I  K  Y  F  Y  D  I  K  D  L  G  N  F  R  :  A  N  P  D  Y  K  G  V  C  H  V  A  L  A  Q  E  G  H  C  R  P  G  E  :  V  L  L  G  T  D  S  H  T  C  T  A  G  A  F  G  Q  F  A  T  G  I  G  N  T  D  A  G  F  V  L  G  T  G  K  I  L  L  K  :  V  P  P  T  L  R  F  V  M  D  G  E  M  P  D  Y  L  L  A  K  D  L  I  L  Q  :  I  I  G  E  I  S  V  A  G  A  T  Y  K  A  M  E  F  V  G  T  T  V  E  S  L  T  :  M  E  E  R  M  T  L  C  N  M  V  V  E  A  G  G  K  N  G  V  I  P  A  D  K  T  T  Y  D  Y  L  E  :  G  R  T  S  V  P  Y  E  P  V  Y  S  D  E  G  A  R :   Y  L  K  E  Y  R  F  D  V  S  K  L  E  P  L  V  A  K  :  P  H  S  P  D  N  R  A  L  A  R  E  C  K  D  V  K  I  D  R  V  Y  I  G  S  C  T  G  G  K  T  E  D  F  M  A  A  A  K  V  F  L  A  S  :  G  K  K  V  K  V  P  T  F  L  V  P  A  T  Q  K  :  V  W  M  D  V  Y  S  L  P  V  P  G  S  G  G  K  T  C  S  Q  I  F  E  E  A  G  C  D  T  P  A  S  P  S  C  G  A  C  L  G  G  P  K  D  T  Y  A  R  M  N  E  A  Q  :  V  C  V  S  T  T  N  R  N  F  P  G  R  M  G  H  K  E  G  Q  I  Y  L  A  S  P  Y  T  A  A  A  S  A  L  T  G  Y  V  T  D  P  R  E  F  L  Q  *  S  S  S  M  T  S  F  *  E  F  G  L  C  C  T  L  T  D  E  *  I  L  S  F  *  C  L  Y  I  P  E  K  G  R  A  R  C  V  S  L  F  S  L  Y  S  Q  E  M  N  A  L  L  H  *  N  E  N  S  L  I  P  N  F  C  L  L  C  C  I  L  G  V  L  L  L  K  A  L  K  *  E  F  V  S  G  N  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="275" stop="373"/>
                    <exon start="774" stop="908"/>
                    <exon start="994" stop="1164"/>
                    <exon start="1932" stop="2084"/>
                    <exon start="2190" stop="2258"/>
                    <exon start="2355" stop="2471"/>
                    <exon start="3015" stop="3089"/>
                    <exon start="3232" stop="3309"/>
                    <exon start="3387" stop="3482"/>
                    <exon start="3656" stop="3705"/>
                    <exon start="4781" stop="4835"/>
                    <exon start="5107" stop="5238"/>
                    <exon start="6436" stop="6483"/>
                    <exon start="6583" stop="6741"/>
                    <exon start="8130" stop="8270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1575</number_coding_nucleotides>
                  <number_encoded_amino_acids>525</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLFDPLRFSRTNLLAMAASSAIASSSTTFINKKDVGLSAFSSQASFSVQTARKRISKRIVSVMTPQQTERKPATTGSVKTGMTMTEKILAKASDKPDVSPGDNVWVNVDVLMTHDVCGPGSIGIFKKEFGQNAKVWDREKLVIIPDHYIFTTDERANRNVDILRDFCNEQNIKYFYDIKDLGNFRANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTLRFVMDGEMPDYLLAKDLILQIIGEISVAGATYKAMEFVGTTVESLTMEERMTLCNMVVEAGGKNGVIPADKTTYDYLEGRTSVPYEPVYSDEGARYLKEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEAQVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9453" PGL_stop="8923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9453" e_stop="8923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="9453" e_stop="8923" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9453" stop="8923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTTGAAAGAGGATATCTATTGGATGACAAGAGGAGCTCAGTGTTGGATGGTTGGAGCATCGACGAGAGCACCGAGGGGCTCAGGTCGAAGCTCGAGAGGTGGAGGAACGAGATCCCTCCGGTACAAAACCGAGGGACAGGTTCAAGTAGCTATCGTTCGACCGGACGTCACCCTAGAAGGCGTTCGAGTGGAGGGAGTAGCTTGTTTTCTTGCTTTGGTAATATTTGTGGCTATGAATGTCAATGTATGTGTGGGAAGCCCAAAAAGAAAAGTGTTAGTAACAAAAAGTATAAAAGCCCATCAACTGCTAGCAGATCATGGTTTTGAAAGCCCAAGCCCAATTAGATTAGGCCCAATTGCAAGAAGAAGAATATTGAGGAATTAGGGGGTCTTTTTGTTTAGGTCTCTCTTTTCATTATTATTTTTTATTTACAATATTGTAATTATTATTCTATCTGATTCCATTATTTTTTTTAGTTCTCAAAACTATGTACATTGTTATCAATTTGTAATTGGTAATATGTCTT</gDNA_template>
            <first_frame> F  S  *  K  R  I  S  I  G  *  Q  E  E  L  S  V  G  W  L  E  H  R  R  E  H  R  G  A  Q  V  E  A  R  E  V  E  E  R  D  P  S  G  T  K  P  R  D  R  F  K  *  L  S  F  D  R  T  S  P  *  K  A  F  E  W  R  E  *  L  V  F  L  L  W  *  Y  L  W  L  *  M  S  M  Y  V  W  E  A  Q  K  E  K  C  *  *  Q  K  V  *  K  P  I  N  C  *  Q  I  M  V  L  K  A  Q  A  Q  L  D  *  A  Q  L  Q  E  E  E  Y  *  G  I  R  G  S  F  C  L  G  L  S  F  H  Y  Y  F  L  F  T  I  L  *  L  L  F  Y  L  I  P  L  F  F  L  V  L  K  T  M  Y  I  V  I  N  L  *  L  V  I  C  L </first_frame>
            <second_frame>  L  V  E  R  G  Y  L  L  D  D  K  R  S  S  V  L  D  G  W  S  I  D  E  S  T  E  G  L  R  S  K  L  E  R  W  R  N  E  I  P  P  V  Q  N  R  G  T  G  S  S  S  Y  R  S  T  G  R  H  P  R  R  R  S  S  G  G  S  S  L  F  S  C  F  G  N  I  C  G  Y  E  C  Q  C  M  C  G  K  P  K  K  K  S  V  S  N  K  K  Y  K  S  P  S  T  A  S  R  S  W  F  *  K  P  K  P  N  *  I  R  P  N  C  K  K  K  N  I  E  E  L  G  G  L  F  V  *  V  S  L  F  I  I  I  F  Y  L  Q  Y  C  N  Y  Y  S  I  *  F  H  Y  F  F  *  F  S  K  L  C  T  L  L  S  I  C  N  W  *  Y  V   </second_frame>
            <third_frame>   *  L  K  E  D  I  Y  W  M  T  R  G  A  Q  C  W  M  V  G  A  S  T  R  A  P  R  G  S  G  R  S  S  R  G  G  G  T  R  S  L  R  Y  K  T  E  G  Q  V  Q  V  A  I  V  R  P  D  V  T  L  E  G  V  R  V  E  G  V  A  C  F  L  A  L  V  I  F  V  A  M  N  V  N  V  C  V  G  S  P  K  R  K  V  L  V  T  K  S  I  K  A  H  Q  L  L  A  D  H  G  F  E  S  P  S  P  I  R  L  G  P  I  A  R  R  R  I  L  R  N  *  G  V  F  L  F  R  S  L  F  S  L  L  F  F  I  Y  N  I  V  I  I  I  L  S  D  S  I  I  F  F  S  S  Q  N  Y  V  H  C  Y  Q  F  V  I  G  N  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9448" stop="9065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKEDIYWMTRGAQCWMVGASTRAPRGSGRSSRGGGTRSLRYKTEGQVQVAIVRPDVTLEGVRVEGVACFLALVIFVAMNVNVCVGSPKRKVLVTKSIKAHQLLADHGFESPSPIRLGPIARRRILRN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9452" stop="9123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVERGYLLDDKRSSVLDGWSIDESTEGLRSKLERWRNEIPPVQNRGTGSSSYRSTGRHPRRRSSGGSSLFSCFGNICGYECQCMCGKPKKKSVSNKKYKSPSTASRSWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14734" PGL_stop="16942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14734" e_stop="14806"/>
            <exon e_start="14997" e_stop="15169"/>
            <exon e_start="15641" e_stop="16299"/>
            <exon e_start="16916" e_stop="16942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.991" e_score="0.959"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.983"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="0.741"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="14734" e_stop="14806" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.991">
            <gDNA_intron_boundary i_start="14807" i_stop="14996" i_length="190"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="14997" e_stop="15169" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15170" i_stop="15640" i_length="471"/>
          </intron>
          <exon e_serial="3" e_score="0.935">
            <gDNA_exon_boundary e_start="15641" e_stop="16299" e_length="659"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16300" i_stop="16915" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="0.741">
            <gDNA_exon_boundary e_start="16916" e_stop="16942" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14734" stop="14806"/>
              <exon start="14997" stop="15169"/>
              <exon start="15641" stop="16299"/>
              <exon start="16916" stop="16942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATAAGAGTGTGATTCAAGAAAATCCAAATAACCCCTTAGTTTTAAGAAAGTATGCTCAGTTCCTTGATCAG : TGTAAAGGGGACTTGGGAGGAGCTAAAGAATACTACTCGCGCGCGGTATTGACAGATGCTAGTGATGGAGAAATTATTTCACAATATGCAAATTTTATATGGCATCTTCATCATGACCAAAATAAAGCCTCTTCTCATTTCAAAAGAGCAGTTCAAGCTTCTCCAGGAAACTG : CGATGTACTAGCATCATATGCTAGGTTTTTATGGGAAACAGAGGAAGACGAAGATGAAGATGAAGATAAAGATAAAGAGTCAAATAATTACAAATATCAATTTCAATATTTTCATGGAGTAATGGTTACTCCAAATGCTTAATCCCCCAATACCAAGTAAAATGAGTGGTCAGAGGGAATTACATGGTGGGAAATCGAACTCTCACTAATAAGGTGAAAGTTTAAATAGTTAATCAGCCGAACTATTAAGATTTTCCGTTTCCATATAGATAAATAATAGTTCCAATAGTATTTTTTTCCTTCCAAAAACCGTTGTCATATATAGAGATAATCTATAGCTATGGTTTTTTTGGTACAATTTCAACGATTGAATTGCTAAAGTGTATAGCTATACTTAAATCGTTGGAATATAGTGTTCATAGCAACGGTTAGCCGTAGCAAAAAAATACCATTGTCATAGGTCTAATTTCTAGTAGTGTCATTTTAAAATAACTTCAGACATGACGTTTAATATTAAGCTGTTGATAAAACTGTCTGCTGAGTTATGTAAGTCTGAATTGATCAGACTAAAATGACTAAGGTTTAAGAAAAAATGTTGATTCACAATGTAAATTTTGATGTTGCTAACAAGCAAATTTGAATTATAATTTTATGAGGTG : AAAAGACATATATAAAAAAAAATGAAT</gDNA_template>
            <first_frame> L  *  E  C  D  S  R  K  S  K  *  P  L  S  F  K  K  V  C  S  V  P  *  S   : V  *  R  G  L  G  R  S  *  R  I  L  L  A  R  G  I  D  R  C  *  *  W  R  N  Y  F  T  I  C  K  F  Y  M  A  S  S  S  *  P  K  *  S  L  F  S  F  Q  K  S  S  S  S  F  S  R  K  L  :  R  C  T  S  I  I  C  *  V  F  M  G  N  R  G  R  R  R  *  R  *  R  *  R  *  R  V  K  *  L  Q  I  S  I  S  I  F  S  W  S  N  G  Y  S  K  C  L  I  P  Q  Y  Q  V  K  *  V  V  R  G  N  Y  M  V  G  N  R  T  L  T  N  K  V  K  V  *  I  V  N  Q  P  N  Y  *  D  F  P  F  P  Y  R  *  I  I  V  P  I  V  F  F  S  F  Q  K  P  L  S  Y  I  E  I  I  Y  S  Y  G  F  F  G  T  I  S  T  I  E  L  L  K  C  I  A  I  L  K  S  L  E  Y  S  V  H  S  N  G  *  P  *  Q  K  N  T  I  V  I  G  L  I  S  S  S  V  I  L  K  *  L  Q  T  *  R  L  I  L  S  C  *  *  N  C  L  L  S  Y  V  S  L  N  *  S  D  *  N  D  *  G  L  R  K  N  V  D  S  Q  C  K  F  *  C  C  *  Q  A  N  L  N  Y  N  F  M  R  * :   K  D  I  Y  K  K  K  *   </first_frame>
            <second_frame>  Y  K  S  V  I  Q  E  N  P  N  N  P  L  V  L  R  K  Y  A  Q  F  L  D  Q  :  C  K  G  D  L  G  G  A  K  E  Y  Y  S  R  A  V  L  T  D  A  S  D  G  E  I  I  S  Q  Y  A  N  F  I  W  H  L  H  H  D  Q  N  K  A  S  S  H  F  K  R  A  V  Q  A  S  P  G  N  C :   D  V  L  A  S  Y  A  R  F  L  W  E  T  E  E  D  E  D  E  D  E  D  K  D  K  E  S  N  N  Y  K  Y  Q  F  Q  Y  F  H  G  V  M  V  T  P  N  A  *  S  P  N  T  K  *  N  E  W  S  E  G  I  T  W  W  E  I  E  L  S  L  I  R  *  K  F  K  *  L  I  S  R  T  I  K  I  F  R  F  H  I  D  K  *  *  F  Q  *  Y  F  F  P  S  K  N  R  C  H  I  *  R  *  S  I  A  M  V  F  L  V  Q  F  Q  R  L  N  C  *  S  V  *  L  Y  L  N  R  W  N  I  V  F  I  A  T  V  S  R  S  K  K  I  P  L  S  *  V  *  F  L  V  V  S  F  *  N  N  F  R  H  D  V  *  Y  *  A  V  D  K  T  V  C  *  V  M  *  V  *  I  D  Q  T  K  M  T  K  V  *  E  K  M  L  I  H  N  V  N  F  D  V  A  N  K  Q  I  *  I  I  I  L  *  G   : E  K  T  Y  I  K  K  N  E  </second_frame>
            <third_frame>   I  R  V  *  F  K  K  I  Q  I  T  P  *  F  *  E  S  M  L  S  S  L  I  S :   V  K  G  T  W  E  E  L  K  N  T  T  R  A  R  Y  *  Q  M  L  V  M  E  K  L  F  H  N  M  Q  I  L  Y  G  I  F  I  M  T  K  I  K  P  L  L  I  S  K  E  Q  F  K  L  L  Q  E  T   : A  M  Y  *  H  H  M  L  G  F  Y  G  K  Q  R  K  T  K  M  K  M  K  I  K  I  K  S  Q  I  I  T  N  I  N  F  N  I  F  M  E  *  W  L  L  Q  M  L  N  P  P  I  P  S  K  M  S  G  Q  R  E  L  H  G  G  K  S  N  S  H  *  *  G  E  S  L  N  S  *  S  A  E  L  L  R  F  S  V  S  I  *  I  N  N  S  S  N  S  I  F  F  L  P  K  T  V  V  I  Y  R  D  N  L  *  L  W  F  F  W  Y  N  F  N  D  *  I  A  K  V  Y  S  Y  T  *  I  V  G  I  *  C  S  *  Q  R  L  A  V  A  K  K  Y  H  C  H  R  S  N  F  *  *  C  H  F  K  I  T  S  D  M  T  F  N  I  K  L  L  I  K  L  S  A  E  L  C  K  S  E  L  I  R  L  K  *  L  R  F  K  K  K  C  *  F  T  M  *  I  L  M  L  L  T  S  K  F  E  L  *  F  Y  E  V  :  K  R  H  I  *  K  K  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14735" stop="14806"/>
                    <exon start="14997" stop="15169"/>
                    <exon start="15641" stop="15782"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKSVIQENPNNPLVLRKYAQFLDQCKGDLGGAKEYYSRAVLTDASDGEIISQYANFIWHLHHDQNKASSHFKRAVQASPGNCDVLASYARFLWETEEDEDEDEDKDKESNNYKYQFQYFHGVMVTPNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25184" PGL_stop="23470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25184" e_stop="24610"/>
            <exon e_start="23575" e_stop="23470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.865" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25184" e_stop="24610" e_length="575"/>
          </exon>
          <intron i_serial="1" don_prob="0.865" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24609" i_stop="23576" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="23575" e_stop="23470" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25184" stop="24610"/>
              <exon start="23575" stop="23470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTCACATTTTCACATTTCAAAAACTCAAGCTTGAAATCTTTATAAAAAAAATAAATAAATACAAAACAACAATGGAATAATCCATCAAGAATCCACAAAATGAGTATGGCATCAAAGCCATTTTGCATATTCTCTCTTTTCTTAGTTATATTTACCATATTCAAGCTAACCCCACAAGCTAAATCTGATTCTGATTATACTAAGTTGATTTACAAGGGTTGTGCAAAGCAAGATTTATCAGATCCATCTGGGGTTTACTCACAAGCTCTTTCTTCCCTTTTTGGCACTCTTGTTTCACAGTCCTCAAAGTCTAAGTTCTATAAGACTAGTACTGGTAGTGGGCAATCTACAATTTCTGGTCTTTTTCAGTGTAGAGGTGACCTTTCTAATGTTGATTGTTATAAATGTGTTAGTGGTTTGCCAATACTCATAGATAAGTTATGTGGAAGTAAGCCTGTTGCTGCAAGAATCCAGCTTTATGGCTGTTACATGCTCTATGAGGTTGCTGGTTTCCCTCAAATCTCTGGAATGGAGATGCTGTTCAAGACTTGTAGTGGGAAAAATGCTCCAG : GTAGTGGGTTTGAGGAAAGAAGAGATACTGCTTTTTCCACATTGGAAAATGGCATGGCTAGTAGCAATGGCTTCTACACGACAAGCTATCAGTCTGTTTATACCAT</gDNA_template>
            <first_frame> F  I  H  I  F  T  F  Q  K  L  K  L  E  I  F  I  K  K  I  N  K  Y  K  T  T  M  E  *  S  I  K  N  P  Q  N  E  Y  G  I  K  A  I  L  H  I  L  S  F  L  S  Y  I  Y  H  I  Q  A  N  P  T  S  *  I  *  F  *  L  Y  *  V  D  L  Q  G  L  C  K  A  R  F  I  R  S  I  W  G  L  L  T  S  S  F  F  P  F  W  H  S  C  F  T  V  L  K  V  *  V  L  *  D  *  Y  W  *  W  A  I  Y  N  F  W  S  F  S  V  *  R  *  P  F  *  C  *  L  L  *  M  C  *  W  F  A  N  T  H  R  *  V  M  W  K  *  A  C  C  C  K  N  P  A  L  W  L  L  H  A  L  *  G  C  W  F  P  S  N  L  W  N  G  D  A  V  Q  D  L  *  W  E  K  C  S  R :   *  W  V  *  G  K  K  R  Y  C  F  F  H  I  G  K  W  H  G  *  *  Q  W  L  L  H  D  K  L  S  V  C  L  Y  H </first_frame>
            <second_frame>  S  F  T  F  S  H  F  K  N  S  S  L  K  S  L  *  K  K  *  I  N  T  K  Q  Q  W  N  N  P  S  R  I  H  K  M  S  M  A  S  K  P  F  C  I  F  S  L  F  L  V  I  F  T  I  F  K  L  T  P  Q  A  K  S  D  S  D  Y  T  K  L  I  Y  K  G  C  A  K  Q  D  L  S  D  P  S  G  V  Y  S  Q  A  L  S  S  L  F  G  T  L  V  S  Q  S  S  K  S  K  F  Y  K  T  S  T  G  S  G  Q  S  T  I  S  G  L  F  Q  C  R  G  D  L  S  N  V  D  C  Y  K  C  V  S  G  L  P  I  L  I  D  K  L  C  G  S  K  P  V  A  A  R  I  Q  L  Y  G  C  Y  M  L  Y  E  V  A  G  F  P  Q  I  S  G  M  E  M  L  F  K  T  C  S  G  K  N  A  P   : G  S  G  F  E  E  R  R  D  T  A  F  S  T  L  E  N  G  M  A  S  S  N  G  F  Y  T  T  S  Y  Q  S  V  Y  T   </second_frame>
            <third_frame>   H  S  H  F  H  I  S  K  T  Q  A  *  N  L  Y  K  K  N  K  *  I  Q  N  N  N  G  I  I  H  Q  E  S  T  K  *  V  W  H  Q  S  H  F  A  Y  S  L  F  S  *  L  Y  L  P  Y  S  S  *  P  H  K  L  N  L  I  L  I  I  L  S  *  F  T  R  V  V  Q  S  K  I  Y  Q  I  H  L  G  F  T  H  K  L  F  L  P  F  L  A  L  L  F  H  S  P  Q  S  L  S  S  I  R  L  V  L  V  V  G  N  L  Q  F  L  V  F  F  S  V  E  V  T  F  L  M  L  I  V  I  N  V  L  V  V  C  Q  Y  S  *  I  S  Y  V  E  V  S  L  L  L  Q  E  S  S  F  M  A  V  T  C  S  M  R  L  L  V  S  L  K  S  L  E  W  R  C  C  S  R  L  V  V  G  K  M  L  Q  :  V  V  G  L  R  K  E  E  I  L  L  F  P  H  W  K  M  A  W  L  V  A  M  A  S  T  R  Q  A  I  S  L  F  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25126" stop="24610"/>
                    <exon start="23575" stop="23472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INTKQQWNNPSRIHKMSMASKPFCIFSLFLVIFTIFKLTPQAKSDSDYTKLIYKGCAKQDLSDPSGVYSQALSSLFGTLVSQSSKSKFYKTSTGSGQSTISGLFQCRGDLSNVDCYKCVSGLPILIDKLCGSKPVAARIQLYGCYMLYEVAGFPQISGMEMLFKTCSGKNAPGSGFEERRDTAFSTLENGMASSNGFYTTSYQSVYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32487" PGL_stop="33111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32487" e_stop="33111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="32487" e_stop="33111" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32487" stop="33111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTAACGGTGGATCTGCTGCTGGCCAGTCTCCAACTGGAGCCACAGGATATGGAAATCAAGGTTATGGCTATGGTGGATATGGCGGAAATGATGGGTCTTATGGAGGTGGTGCATCGGGAGATATGCAATCAGGTGGAGGTTACATGGGCAGTGGCTATGGCGATGCTAGTGGAAATTCACAAGGTTCTGGTAATTATGGTGCTCAGCAAAATGGACCTTATGGTGGTGGTGCCCCAAGTCGGCAGGCTCAACAACACTGATCATAGTGGTCAATTTCATCCGAGAAGTCACCTAGTAACGTAGCAGAGGATTTCACGCAACTGATTTCGTTCCACAGACAGTTTCCTCTTGCTGTTCTTGCAAGCGTAAAGCGCTTAATGGGATTGCTTTAATTTTTGTAGTTTGCAGTTCTTATTTCTAGTTTACAACAAGTAATTGTCAGTCTTATTTCCCTGTTTTGTCATATTTTATGTTTTACTGTAGTTTTAATTTGGCTTGCTTATGGTTGAGGTTCGTTTAATAGTTAGTTTTACCCTTGGTGATACTATCTCATCGCCATTACTAAACTTCCTTAGTTGGATGGAAAACTCCAAATAGGATAATGAAAGTGGAAAATACAACTC</gDNA_template>
            <first_frame> C  *  R  W  I  C  C  W  P  V  S  N  W  S  H  R  I  W  K  S  R  L  W  L  W  W  I  W  R  K  *  W  V  L  W  R  W  C  I  G  R  Y  A  I  R  W  R  L  H  G  Q  W  L  W  R  C  *  W  K  F  T  R  F  W  *  L  W  C  S  A  K  W  T  L  W  W  W  C  P  K  S  A  G  S  T  T  L  I  I  V  V  N  F  I  R  E  V  T  *  *  R  S  R  G  F  H  A  T  D  F  V  P  Q  T  V  S  S  C  C  S  C  K  R  K  A  L  N  G  I  A  L  I  F  V  V  C  S  S  Y  F  *  F  T  T  S  N  C  Q  S  Y  F  P  V  L  S  Y  F  M  F  Y  C  S  F  N  L  A  C  L  W  L  R  F  V  *  *  L  V  L  P  L  V  I  L  S  H  R  H  Y  *  T  S  L  V  G  W  K  T  P  N  R  I  M  K  V  E  N  T  T  </first_frame>
            <second_frame>  A  N  G  G  S  A  A  G  Q  S  P  T  G  A  T  G  Y  G  N  Q  G  Y  G  Y  G  G  Y  G  G  N  D  G  S  Y  G  G  G  A  S  G  D  M  Q  S  G  G  G  Y  M  G  S  G  Y  G  D  A  S  G  N  S  Q  G  S  G  N  Y  G  A  Q  Q  N  G  P  Y  G  G  G  A  P  S  R  Q  A  Q  Q  H  *  S  *  W  S  I  S  S  E  K  S  P  S  N  V  A  E  D  F  T  Q  L  I  S  F  H  R  Q  F  P  L  A  V  L  A  S  V  K  R  L  M  G  L  L  *  F  L  *  F  A  V  L  I  S  S  L  Q  Q  V  I  V  S  L  I  S  L  F  C  H  I  L  C  F  T  V  V  L  I  W  L  A  Y  G  *  G  S  F  N  S  *  F  Y  P  W  *  Y  Y  L  I  A  I  T  K  L  P  *  L  D  G  K  L  Q  I  G  *  *  K  W  K  I  Q  L </second_frame>
            <third_frame>   L  T  V  D  L  L  L  A  S  L  Q  L  E  P  Q  D  M  E  I  K  V  M  A  M  V  D  M  A  E  M  M  G  L  M  E  V  V  H  R  E  I  C  N  Q  V  E  V  T  W  A  V  A  M  A  M  L  V  E  I  H  K  V  L  V  I  M  V  L  S  K  M  D  L  M  V  V  V  P  Q  V  G  R  L  N  N  T  D  H  S  G  Q  F  H  P  R  S  H  L  V  T  *  Q  R  I  S  R  N  *  F  R  S  T  D  S  F  L  L  L  F  L  Q  A  *  S  A  *  W  D  C  F  N  F  C  S  L  Q  F  L  F  L  V  Y  N  K  *  L  S  V  L  F  P  C  F  V  I  F  Y  V  L  L  *  F  *  F  G  L  L  M  V  E  V  R  L  I  V  S  F  T  L  G  D  T  I  S  S  P  L  L  N  F  L  S  W  M  E  N  S  K  *  D  N  E  S  G  K  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32489" stop="32791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTVDLLLASLQLEPQDMEIKVMAMVDMAEMMGLMEVVHREICNQVEVTWAVAMAMLVEIHKVLVIMVLSKMDLMVVVPQVGRLNNTDHSGQFHPRSHLVT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32488" stop="32748"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANGGSAAGQSPTGATGYGNQGYGYGGYGGNDGSYGGGASGDMQSGGGYMGSGYGDASGNSQGSGNYGAQQNGPYGGGAPSRQAQQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33948" PGL_stop="34628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33948" e_stop="34628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="33948" e_stop="34628" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33948" stop="34628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345188" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAGTTACAATAGGACTAGATAAAAATTGTTTGAGGTATCAGATTCTTGTTTGTTTTTTTTCAAGCAATACTGCGTGGAACTGTTGAATGCTGTTGATATCAAGTTTCTGGCAGTTGTCGATTTCTATGTTGGAAAGTATAGGCATGGCTGTATTTTCCACATGGATTCTCTGCAGCTCGGACAAATTGAGGAGTTGTAAGCATTTGAGCTGAGGGAAACCTGAAGCTGAACAGACCATATCCTTCCCCATATAGGCATCATCATTGAGGCCTAGAATCCCTAAACTAGGAAGCTTCTCCAAGATTGGCATGGGGTCTTGTTTAAGACAAGACTTATGAAGACGTAACTGAGTGAGATTCGGGGAGATTTTAGGAGATGGTAATAGGGGTCCAATAAATCCTTTGAATTTCAAGGTTTGGAGTACTTCACAACCTAAGAATTCTTCTAGTACAGTACTACGTTCGGGTGCAGAGCAATTCAAATCTATGATGTCAATGGAGCAATGTAGTGGACATTTGTTTGAAGTCAGGTAACTGGTGATTGATTCAAAGTCGGGGAAATTATTTTCAACCTTTGCCTCCAGGTAATGGAGTTTACAAAGTGTTGAGACATCATTAGCTCTGCACAAGCTCGTGTTGAAGTTCACCAAGGTTTCAAGTTGTGTCAAGCTATTGAGTC</gDNA_template>
            <first_frame> N  K  L  Q  *  D  *  I  K  I  V  *  G  I  R  F  L  F  V  F  F  Q  A  I  L  R  G  T  V  E  C  C  *  Y  Q  V  S  G  S  C  R  F  L  C  W  K  V  *  A  W  L  Y  F  P  H  G  F  S  A  A  R  T  N  *  G  V  V  S  I  *  A  E  G  N  L  K  L  N  R  P  Y  P  S  P  Y  R  H  H  H  *  G  L  E  S  L  N  *  E  A  S  P  R  L  A  W  G  L  V  *  D  K  T  Y  E  D  V  T  E  *  D  S  G  R  F  *  E  M  V  I  G  V  Q  *  I  L  *  I  S  R  F  G  V  L  H  N  L  R  I  L  L  V  Q  Y  Y  V  R  V  Q  S  N  S  N  L  *  C  Q  W  S  N  V  V  D  I  C  L  K  S  G  N  W  *  L  I  Q  S  R  G  N  Y  F  Q  P  L  P  P  G  N  G  V  Y  K  V  L  R  H  H  *  L  C  T  S  S  C  *  S  S  P  R  F  Q  V  V  S  S  Y  *  V </first_frame>
            <second_frame>  T  S  Y  N  R  T  R  *  K  L  F  E  V  S  D  S  C  L  F  F  F  K  Q  Y  C  V  E  L  L  N  A  V  D  I  K  F  L  A  V  V  D  F  Y  V  G  K  Y  R  H  G  C  I  F  H  M  D  S  L  Q  L  G  Q  I  E  E  L  *  A  F  E  L  R  E  T  *  S  *  T  D  H  I  L  P  H  I  G  I  I  I  E  A  *  N  P  *  T  R  K  L  L  Q  D  W  H  G  V  L  F  K  T  R  L  M  K  T  *  L  S  E  I  R  G  D  F  R  R  W  *  *  G  S  N  K  S  F  E  F  Q  G  L  E  Y  F  T  T  *  E  F  F  *  Y  S  T  T  F  G  C  R  A  I  Q  I  Y  D  V  N  G  A  M  *  W  T  F  V  *  S  Q  V  T  G  D  *  F  K  V  G  E  I  I  F  N  L  C  L  Q  V  M  E  F  T  K  C  *  D  I  I  S  S  A  Q  A  R  V  E  V  H  Q  G  F  K  L  C  Q  A  I  E   </second_frame>
            <third_frame>   Q  V  T  I  G  L  D  K  N  C  L  R  Y  Q  I  L  V  C  F  F  S  S  N  T  A  W  N  C  *  M  L  L  I  S  S  F  W  Q  L  S  I  S  M  L  E  S  I  G  M  A  V  F  S  T  W  I  L  C  S  S  D  K  L  R  S  C  K  H  L  S  *  G  K  P  E  A  E  Q  T  I  S  F  P  I  *  A  S  S  L  R  P  R  I  P  K  L  G  S  F  S  K  I  G  M  G  S  C  L  R  Q  D  L  *  R  R  N  *  V  R  F  G  E  I  L  G  D  G  N  R  G  P  I  N  P  L  N  F  K  V  W  S  T  S  Q  P  K  N  S  S  S  T  V  L  R  S  G  A  E  Q  F  K  S  M  M  S  M  E  Q  C  S  G  H  L  F  E  V  R  *  L  V  I  D  S  K  S  G  K  L  F  S  T  F  A  S  R  *  W  S  L  Q  S  V  E  T  S  L  A  L  H  K  L  V  L  K  F  T  K  V  S  S  C  V  K  L  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0207A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="35790" PGL_stop="34923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35790" e_stop="35644"/>
            <exon e_start="35519" e_stop="34923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="0.980"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="35790" e_stop="35644" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="35643" i_stop="35520" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="35519" e_stop="34923" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35790" stop="35644"/>
              <exon start="35519" stop="34923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAACTACCCGAGTTGAATATGTAGCGAAATACATATCAAAAAAACACAGTCAGCCTGTACATAACATGAATTCCTTGAACGAGGATGATAGTTGGAGATTGTTCGACATGGTGTTATCTCACAGTCACAGGGCATCATCATCAG : ATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCATCTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTATAAACAAGAGTTACCAAAGGAATTGCAACCATGCTTTATTTACTTAGGTCATTTCCTAGAAAATCAATTGATAGATCCAGAAAAGTTGTCCCATTTATGGATGATCGAAGGGTTATTATCAACAAGACAAAGTGTTGTTAAAGGGCATCAGAGCATGACTGAGAGATATCTGAAAGAACTAGAACGTATGGGCGTGGTAGAGCTGCAACCAGAGGAAGTTCCAACGACCAACAAATTATTCAAGGCTTATCGCTTTGTTCAAGGTATGGAAAAATTTTGTGTCTCAAATTGTGAAGAAAAATGTTTTCTCAAAATCATTGATTTAAGACGAGAAAACTGTTCACTCTCATCGAGTGACAGACCACGTCGACTTGTGATATATCTAGGTAATCGCACAGTTGAGATTCCTCCTAAAGTTTCTAAAACTATTCTTAGTCTTAGAGTGGTTCTTCTTGGAAACCAGCACACCCCTACTGAAATGCTAAACC</gDNA_template>
            <first_frame> L  *  L  P  E  L  N  M  *  R  N  T  Y  Q  K  N  T  V  S  L  Y  I  T  *  I  P  *  T  R  M  I  V  G  D  C  S  T  W  C  Y  L  T  V  T  G  H  H  H  Q  :  I  G  K  W  L  D  V  V  M  G  Y  Q  G  S  S  S  I  L  H  R  I  K  Q  V  I  N  H  L  S  L  N  T  I  V  Y  F  I  N  K  S  Y  Q  R  N  C  N  H  A  L  F  T  *  V  I  S  *  K  I  N  *  *  I  Q  K  S  C  P  I  Y  G  *  S  K  G  Y  Y  Q  Q  D  K  V  L  L  K  G  I  R  A  *  L  R  D  I  *  K  N  *  N  V  W  A  W  *  S  C  N  Q  R  K  F  Q  R  P  T  N  Y  S  R  L  I  A  L  F  K  V  W  K  N  F  V  S  Q  I  V  K  K  N  V  F  S  K  S  L  I  *  D  E  K  T  V  H  S  H  R  V  T  D  H  V  D  L  *  Y  I  *  V  I  A  Q  L  R  F  L  L  K  F  L  K  L  F  L  V  L  E  W  F  F  L  E  T  S  T  P  L  L  K  C  *  T </first_frame>
            <second_frame>  C  N  Y  P  S  *  I  C  S  E  I  H  I  K  K  T  Q  S  A  C  T  *  H  E  F  L  E  R  G  *  *  L  E  I  V  R  H  G  V  I  S  Q  S  Q  G  I  I  I  R :   *  G  N  G  *  M  L  L  W  V  T  R  A  H  Q  A  S  C  I  V  *  N  K  *  S  I  I  Y  L  *  I  L  L  S  T  L  *  T  R  V  T  K  G  I  A  T  M  L  Y  L  L  R  S  F  P  R  K  S  I  D  R  S  R  K  V  V  P  F  M  D  D  R  R  V  I  I  N  K  T  K  C  C  *  R  A  S  E  H  D  *  E  I  S  E  R  T  R  T  Y  G  R  G  R  A  A  T  R  G  S  S  N  D  Q  Q  I  I  Q  G  L  S  L  C  S  R  Y  G  K  I  L  C  L  K  L  *  R  K  M  F  S  Q  N  H  *  F  K  T  R  K  L  F  T  L  I  E  *  Q  T  T  S  T  C  D  I  S  R  *  S  H  S  *  D  S  S  *  S  F  *  N  Y  S  *  S  *  S  G  S  S  W  K  P  A  H  P  Y  *  N  A  K   </second_frame>
            <third_frame>   V  T  T  R  V  E  Y  V  A  K  Y  I  S  K  K  H  S  Q  P  V  H  N  M  N  S  L  N  E  D  D  S  W  R  L  F  D  M  V  L  S  H  S  H  R  A  S  S  S   : D  R  E  M  V  R  C  C  Y  G  L  P  G  L  I  K  H  L  A  S  Y  K  T  S  D  Q  S  F  I  S  E  Y  Y  C  L  L  Y  K  Q  E  L  P  K  E  L  Q  P  C  F  I  Y  L  G  H  F  L  E  N  Q  L  I  D  P  E  K  L  S  H  L  W  M  I  E  G  L  L  S  T  R  Q  S  V  V  K  G  H  Q  S  M  T  E  R  Y  L  K  E  L  E  R  M  G  V  V  E  L  Q  P  E  E  V  P  T  T  N  K  L  F  K  A  Y  R  F  V  Q  G  M  E  K  F  C  V  S  N  C  E  E  K  C  F  L  K  I  I  D  L  R  R  E  N  C  S  L  S  S  S  D  R  P  R  R  L  V  I  Y  L  G  N  R  T  V  E  I  P  P  K  V  S  K  T  I  L  S  L  R  V  V  L  L  G  N  Q  H  T  P  T  E  M  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35788" stop="35644"/>
                    <exon start="35519" stop="34924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTRVEYVAKYISKKHSQPVHNMNSLNEDDSWRLFDMVLSHSHRASSSDREMVRCCYGLPGLIKHLASYKTSDQSFISEYYCLLYKQELPKELQPCFIYLGHFLENQLIDPEKLSHLWMIEGLLSTRQSVVKGHQSMTERYLKELERMGVVELQPEEVPTTNKLFKAYRFVQGMEKFCVSNCEEKCFLKIIDLRRENCSLSSSDRPRRLVIYLGNRTVEIPPKVSKTILSLRVVLLGNQHTPTEMLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="43391" PGL_stop="44105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43391" e_stop="44105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="43391" e_stop="44105" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43391" stop="44105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTACATTATACATAAGAAACATAATTTTTTTTATATATATATATAAAGAAAAAGAAAGAGCACACTAATCCCAATCACAAAATGACAAAACCAAAGGAGAATATAGGCACACCAATTCAGTTGCAGATATAGAAAGTTGAGAGCCAAAAGAAGGGGTGCAAGGAGGACATAAACACGACGACATTCAGTTGACAAAAGAAAGTAGTAACTGGCTGACCTCTGAAGAGATTTGATTAGTTGCAATGAGAGTTATGTATCGGGCGGGAAAATGGTTAGCTTGAATCCAGTACATACACTTTGGGATTCTATTTTCTGGGCAGATTTAACCGTTGATTTGGTTGTATTCACCAGTTCCATCATTTTCAGGTTGCTTATGTTGGCAAAGTTTATAGGGATTTCCTCAAGCTTATTTAAATTACGAAGGACAAGCCTCTCTAAGCTCGGAAAATTCTCATCACAACCCTTCCAACAAACTAGTTCTGACCTTTCAATCCATAATACCTTAAGACAAGGAAACACGTAATCCTTCTTCAACTCCCAAGAATCCCCCCTAAATGCATTCTCTTTCACCTTCAACACTTCAAGAAGCTCCAAATGGCCAACTGCTCTGTGTATCTCCTCCCAATCCAACCACGTACCTGATAAAGTTAACTGCTTTAACCTCCGAGGGAATCCATAATTTTCTGAATCAAGCTGCAACTTCCCACTTGCTA</gDNA_template>
            <first_frame> K  Y  I  I  H  K  K  H  N  F  F  Y  I  Y  I  *  R  K  R  K  S  T  L  I  P  I  T  K  *  Q  N  Q  R  R  I  *  A  H  Q  F  S  C  R  Y  R  K  L  R  A  K  R  R  G  A  R  R  T  *  T  R  R  H  S  V  D  K  R  K  *  *  L  A  D  L  *  R  D  L  I  S  C  N  E  S  Y  V  S  G  G  K  M  V  S  L  N  P  V  H  T  L  W  D  S  I  F  W  A  D  L  T  V  D  L  V  V  F  T  S  S  I  I  F  R  L  L  M  L  A  K  F  I  G  I  S  S  S  L  F  K  L  R  R  T  S  L  S  K  L  G  K  F  S  S  Q  P  F  Q  Q  T  S  S  D  L  S  I  H  N  T  L  R  Q  G  N  T  *  S  F  F  N  S  Q  E  S  P  L  N  A  F  S  F  T  F  N  T  S  R  S  S  K  W  P  T  A  L  C  I  S  S  Q  S  N  H  V  P  D  K  V  N  C  F  N  L  R  G  N  P  *  F  S  E  S  S  C  N  F  P  L  A  </first_frame>
            <second_frame>  S  T  L  Y  I  R  N  I  I  F  F  I  Y  I  Y  K  E  K  E  R  A  H  *  S  Q  S  Q  N  D  K  T  K  G  E  Y  R  H  T  N  S  V  A  D  I  E  S  *  E  P  K  E  G  V  Q  G  G  H  K  H  D  D  I  Q  L  T  K  E  S  S  N  W  L  T  S  E  E  I  *  L  V  A  M  R  V  M  Y  R  A  G  K  W  L  A  *  I  Q  Y  I  H  F  G  I  L  F  S  G  Q  I  *  P  L  I  W  L  Y  S  P  V  P  S  F  S  G  C  L  C  W  Q  S  L  *  G  F  P  Q  A  Y  L  N  Y  E  G  Q  A  S  L  S  S  E  N  S  H  H  N  P  S  N  K  L  V  L  T  F  Q  S  I  I  P  *  D  K  E  T  R  N  P  S  S  T  P  K  N  P  P  *  M  H  S  L  S  P  S  T  L  Q  E  A  P  N  G  Q  L  L  C  V  S  P  P  N  P  T  T  Y  L  I  K  L  T  A  L  T  S  E  G  I  H  N  F  L  N  Q  A  A  T  S  H  L  L </second_frame>
            <third_frame>   V  H  Y  T  *  E  T  *  F  F  L  Y  I  Y  I  K  K  K  K  E  H  T  N  P  N  H  K  M  T  K  P  K  E  N  I  G  T  P  I  Q  L  Q  I  *  K  V  E  S  Q  K  K  G  C  K  E  D  I  N  T  T  T  F  S  *  Q  K  K  V  V  T  G  *  P  L  K  R  F  D  *  L  Q  *  E  L  C  I  G  R  E  N  G  *  L  E  S  S  T  Y  T  L  G  F  Y  F  L  G  R  F  N  R  *  F  G  C  I  H  Q  F  H  H  F  Q  V  A  Y  V  G  K  V  Y  R  D  F  L  K  L  I  *  I  T  K  D  K  P  L  *  A  R  K  I  L  I  T  T  L  P  T  N  *  F  *  P  F  N  P  *  Y  L  K  T  R  K  H  V  I  L  L  Q  L  P  R  I  P  P  K  C  I  L  F  H  L  Q  H  F  K  K  L  Q  M  A  N  C  S  V  Y  L  L  P  I  Q  P  R  T  *  *  S  *  L  L  *  P  P  R  E  S  I  I  F  *  I  K  L  Q  L  P  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43616" stop="43915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDLISCNESYVSGGKMVSLNPVHTLWDSIFWADLTVDLVVFTSSIIFRLLMLAKFIGISSSLFKLRRTSLSKLGKFSSQPFQQTSSDLSIHNTLRQGNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="45041" PGL_stop="44312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45041" e_stop="44312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="45041" e_stop="44312" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45041" stop="44312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTGCTTCTTATATTGTGGTGCTTTTCCTAAAGGTTCCGAGATCCCTGCTTGGAAGATAGTCCGGTTGTGGATCGCGGAAGGGTTCATTCGAGAAACAACGGGATCAAAAATTGAAAGTGTAGCAGAGGGTTACTTGAATGAACTTGTCAGCAAGAGCTTACTGATGGTAACACAAAGGACATCCAATGGCCAAATAAAAACATTCCGCGTGCATGACATGTTACATGAGTTCTGTACGCTCGAAGCAAGTGAGGAAAATTTTTTCAAAGAAATAAAACTAGGTGTCGAGCAATCTTTCCCCAGAAACCAGGAATTATCCACATTTCGCCGCCTCAGCATTGATTCTTCTGTTCAAGAATTCATTTCTACCAACCCGTATGGTGATGGCATTCGTTCATTCCTCTGTTTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCCGAAATCCTTTCCACTACTGAGGGTTCTTGACATTGAGTCCATATTATTTGAGTTAGAGACAATCCGAAAATCCCCATTCCGGAAGCAGTTCTTTCAGCTATATCATTTGAGATACCTTGCTATATCAAGTGACTCGTTAAAGATACTTCCTAAATTCATGGAGGACCTGTGGAATCTACAAACCCTCATAATTTCGACTCAACAAGAGACATTGAACATAGAAGCAGACATATGTAACATGCCACACCTTAGGCATGTTCACACAAATGC</gDNA_template>
            <first_frame> K  L  A  S  Y  I  V  V  L  F  L  K  V  P  R  S  L  L  G  R  *  S  G  C  G  S  R  K  G  S  F  E  K  Q  R  D  Q  K  L  K  V  *  Q  R  V  T  *  M  N  L  S  A  R  A  Y  *  W  *  H  K  G  H  P  M  A  K  *  K  H  S  A  C  M  T  C  Y  M  S  S  V  R  S  K  Q  V  R  K  I  F  S  K  K  *  N  *  V  S  S  N  L  S  P  E  T  R  N  Y  P  H  F  A  A  S  A  L  I  L  L  F  K  N  S  F  L  P  T  R  M  V  M  A  F  V  H  S  S  V  S  P  L  G  T  L  R  C  P  H  M  S  *  R  Q  S  R  N  P  F  H  Y  *  G  F  L  T  L  S  P  Y  Y  L  S  *  R  Q  S  E  N  P  H  S  G  S  S  S  F  S  Y  I  I  *  D  T  L  L  Y  Q  V  T  R  *  R  Y  F  L  N  S  W  R  T  C  G  I  Y  K  P  S  *  F  R  L  N  K  R  H  *  T  *  K  Q  T  Y  V  T  C  H  T  L  G  M  F  T  Q  M  </first_frame>
            <second_frame>  S  L  L  L  I  L  W  C  F  S  *  R  F  R  D  P  C  L  E  D  S  P  V  V  D  R  G  R  V  H  S  R  N  N  G  I  K  N  *  K  C  S  R  G  L  L  E  *  T  C  Q  Q  E  L  T  D  G  N  T  K  D  I  Q  W  P  N  K  N  I  P  R  A  *  H  V  T  *  V  L  Y  A  R  S  K  *  G  K  F  F  Q  R  N  K  T  R  C  R  A  I  F  P  Q  K  P  G  I  I  H  I  S  P  P  Q  H  *  F  F  C  S  R  I  H  F  Y  Q  P  V  W  *  W  H  S  F  I  P  L  F  L  L  S  E  H  C  D  V  P  I  *  V  R  D  N  P  E  I  L  S  T  T  E  G  S  *  H  *  V  H  I  I  *  V  R  D  N  P  K  I  P  I  P  E  A  V  L  S  A  I  S  F  E  I  P  C  Y  I  K  *  L  V  K  D  T  S  *  I  H  G  G  P  V  E  S  T  N  P  H  N  F  D  S  T  R  D  I  E  H  R  S  R  H  M  *  H  A  T  P  *  A  C  S  H  K  C </second_frame>
            <third_frame>   A  C  F  L  Y  C  G  A  F  P  K  G  S  E  I  P  A  W  K  I  V  R  L  W  I  A  E  G  F  I  R  E  T  T  G  S  K  I  E  S  V  A  E  G  Y  L  N  E  L  V  S  K  S  L  L  M  V  T  Q  R  T  S  N  G  Q  I  K  T  F  R  V  H  D  M  L  H  E  F  C  T  L  E  A  S  E  E  N  F  F  K  E  I  K  L  G  V  E  Q  S  F  P  R  N  Q  E  L  S  T  F  R  R  L  S  I  D  S  S  V  Q  E  F  I  S  T  N  P  Y  G  D  G  I  R  S  F  L  C  F  S  S  R  N  I  A  M  S  P  Y  E  L  E  T  I  P  K  S  F  P  L  L  R  V  L  D  I  E  S  I  L  F  E  L  E  T  I  R  K  S  P  F  R  K  Q  F  F  Q  L  Y  H  L  R  Y  L  A  I  S  S  D  S  L  K  I  L  P  K  F  M  E  D  L  W  N  L  Q  T  L  I  I  S  T  Q  Q  E  T  L  N  I  E  A  D  I  C  N  M  P  H  L  R  H  V  H  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45039" stop="44314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACFLYCGAFPKGSEIPAWKIVRLWIAEGFIRETTGSKIESVAEGYLNELVSKSLLMVTQRTSNGQIKTFRVHDMLHEFCTLEASEENFFKEIKLGVEQSFPRNQELSTFRRLSIDSSVQEFISTNPYGDGIRSFLCFSSRNIAMSPYELETIPKSFPLLRVLDIESILFELETIRKSPFRKQFFQLYHLRYLAISSDSLKILPKFMEDLWNLQTLIISTQQETLNIEADICNMPHLRHVHTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="45579" PGL_stop="45080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45579" e_stop="45080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45579" e_stop="45080" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45579" stop="45080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTAAAATCATCAACCAATTCACCAGAAACACTGAACAATATCGATATGTAACTGAGGAGGCTCTAGCTGAAGTAATACGCAAACATTTGTTGTTCGGAAAGTATCTGATTGTATTGGATGATGTGTGGACACAGGAACCTTTGGATGATGTCAAAATTGCTTTACCAAACAAGATGAGAGGTAAAGTCTTGTTTACCACTCGAGATGACGAGGTGGGAAAATTTTGTTGCAATGAACCTCATCATATAAAATTCCTAACCGACCACGAATGTTGGGAGCTACTACAGAAGAAGGTTTTCCACAAGGATAAATGTCCCCTGGACTTGGAAGTACTCGGGAAGCGCATAGCTAAGAAATGTATGGGTCTTCCTCTTGCAGCTTTGGTGATTGCGGGAGCCCTAACCGGGAGAGGCAAGACTAAAAGTGAGTGGGAAATAGTGCATCAATTTGTGAGTGAACACATTATTAGTAGTGATATTAGGATGACCAAGAAATT</gDNA_template>
            <first_frame> F  L  K  I  I  N  Q  F  T  R  N  T  E  Q  Y  R  Y  V  T  E  E  A  L  A  E  V  I  R  K  H  L  L  F  G  K  Y  L  I  V  L  D  D  V  W  T  Q  E  P  L  D  D  V  K  I  A  L  P  N  K  M  R  G  K  V  L  F  T  T  R  D  D  E  V  G  K  F  C  C  N  E  P  H  H  I  K  F  L  T  D  H  E  C  W  E  L  L  Q  K  K  V  F  H  K  D  K  C  P  L  D  L  E  V  L  G  K  R  I  A  K  K  C  M  G  L  P  L  A  A  L  V  I  A  G  A  L  T  G  R  G  K  T  K  S  E  W  E  I  V  H  Q  F  V  S  E  H  I  I  S  S  D  I  R  M  T  K  K   </first_frame>
            <second_frame>  F  L  K  S  S  T  N  S  P  E  T  L  N  N  I  D  M  *  L  R  R  L  *  L  K  *  Y  A  N  I  C  C  S  E  S  I  *  L  Y  W  M  M  C  G  H  R  N  L  W  M  M  S  K  L  L  Y  Q  T  R  *  E  V  K  S  C  L  P  L  E  M  T  R  W  E  N  F  V  A  M  N  L  I  I  *  N  S  *  P  T  T  N  V  G  S  Y  Y  R  R  R  F  S  T  R  I  N  V  P  W  T  W  K  Y  S  G  S  A  *  L  R  N  V  W  V  F  L  L  Q  L  W  *  L  R  E  P  *  P  G  E  A  R  L  K  V  S  G  K  *  C  I  N  L  *  V  N  T  L  L  V  V  I  L  G  *  P  R  N  </second_frame>
            <third_frame>   S  *  N  H  Q  P  I  H  Q  K  H  *  T  I  S  I  C  N  *  G  G  S  S  *  S  N  T  Q  T  F  V  V  R  K  V  S  D  C  I  G  *  C  V  D  T  G  T  F  G  *  C  Q  N  C  F  T  K  Q  D  E  R  *  S  L  V  Y  H  S  R  *  R  G  G  K  I  L  L  Q  *  T  S  S  Y  K  I  P  N  R  P  R  M  L  G  A  T  T  E  E  G  F  P  Q  G  *  M  S  P  G  L  G  S  T  R  E  A  H  S  *  E  M  Y  G  S  S  S  C  S  F  G  D  C  G  S  P  N  R  E  R  Q  D  *  K  *  V  G  N  S  A  S  I  C  E  *  T  H  Y  *  *  *  Y  *  D  D  Q  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45579" stop="45082"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKIINQFTRNTEQYRYVTEEALAEVIRKHLLFGKYLIVLDDVWTQEPLDDVKIALPNKMRGKVLFTTRDDEVGKFCCNEPHHIKFLTDHECWELLQKKVFHKDKCPLDLEVLGKRIAKKCMGLPLAALVIAGALTGRGKTKSEWEIVHQFVSEHIISSDIRMTKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="50079" PGL_stop="50854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50079" e_stop="50854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="50079" e_stop="50854" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50079" stop="50854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAGTTTGTGTCGGGTGATGAAAGGAATTGCTCTATTGCAAAAGTCCAACAACAACCAACAATTGATGAGGCAAAACAACAAGTTCGTTTACAACCATGAAGACGGTGCAGTTGTTGTTGGAATGGAGGACGAAAAAGAGGAGATAATACAAGTTTTGTTACTTAATTCACAAGTATCATCAGAAGTCGATTTCCAAGCAGTTCCCATATGGGGACGTAGTGGCATGGGAAAGGCTACACTTGTTAATGAAATATACAACGACCCTCGCATTGTTAAAGAGTTTGGACATCCTCATCTTGTCAATATTCGTCTATCTGAAAACATCAATGCCCATGACGCACTTCAACATGTTTTCGAGTTGTTTGAAGGAAGTCGTATAGATGACAAGTATGTTGACATGTCCACAACTAGTTTGGAAGATTGTGTCAGACAACATCTTGAAATGTCAAGGACGTTGATTGTTCTACAAGGAGTAGGCTCAATTGATGATTGGCGGATGTTGCGTTCTGTCCTGGGAGCTAAAGGTTGCATCATACTGATTACGACTCGAGCAAGACAAGTAGCAGAAAGTATAACTCAAGCAATTCATATTCATGAAAAGAGGCCTTTAACTGAAGAAAACAGCTGGAAGTTATTTAAGGAGATGGTTTGGCCAGGTATGTATATTTTTAATCGGAATGCTATCTTTAGTACTATGTTGTTTTGGTTCAAAATGGTATATATGTTGTTTCTTTATGACCAGGAGGAGCTGAAATCCAATCGGCAATATTGG</gDNA_template>
            <first_frame> S  R  V  C  V  G  *  *  K  E  L  L  Y  C  K  S  P  T  T  T  N  N  *  *  G  K  T  T  S  S  F  T  T  M  K  T  V  Q  L  L  L  E  W  R  T  K  K  R  R  *  Y  K  F  C  Y  L  I  H  K  Y  H  Q  K  S  I  S  K  Q  F  P  Y  G  D  V  V  A  W  E  R  L  H  L  L  M  K  Y  T  T  T  L  A  L  L  K  S  L  D  I  L  I  L  S  I  F  V  Y  L  K  T  S  M  P  M  T  H  F  N  M  F  S  S  C  L  K  E  V  V  *  M  T  S  M  L  T  C  P  Q  L  V  W  K  I  V  S  D  N  I  L  K  C  Q  G  R  *  L  F  Y  K  E  *  A  Q  L  M  I  G  G  C  C  V  L  S  W  E  L  K  V  A  S  Y  *  L  R  L  E  Q  D  K  *  Q  K  V  *  L  K  Q  F  I  F  M  K  R  G  L  *  L  K  K  T  A  G  S  Y  L  R  R  W  F  G  Q  V  C  I  F  L  I  G  M  L  S  L  V  L  C  C  F  G  S  K  W  Y  I  C  C  F  F  M  T  R  R  S  *  N  P  I  G  N  I   </first_frame>
            <second_frame>  H  E  F  V  S  G  D  E  R  N  C  S  I  A  K  V  Q  Q  Q  P  T  I  D  E  A  K  Q  Q  V  R  L  Q  P  *  R  R  C  S  C  C  W  N  G  G  R  K  R  G  D  N  T  S  F  V  T  *  F  T  S  I  I  R  S  R  F  P  S  S  S  H  M  G  T  *  W  H  G  K  G  Y  T  C  *  *  N  I  Q  R  P  S  H  C  *  R  V  W  T  S  S  S  C  Q  Y  S  S  I  *  K  H  Q  C  P  *  R  T  S  T  C  F  R  V  V  *  R  K  S  Y  R  *  Q  V  C  *  H  V  H  N  *  F  G  R  L  C  Q  T  T  S  *  N  V  K  D  V  D  C  S  T  R  S  R  L  N  *  *  L  A  D  V  A  F  C  P  G  S  *  R  L  H  H  T  D  Y  D  S  S  K  T  S  S  R  K  Y  N  S  S  N  S  Y  S  *  K  E  A  F  N  *  R  K  Q  L  E  V  I  *  G  D  G  L  A  R  Y  V  Y  F  *  S  E  C  Y  L  *  Y  Y  V  V  L  V  Q  N  G  I  Y  V  V  S  L  *  P  G  G  A  E  I  Q  S  A  I  L  </second_frame>
            <third_frame>   T  S  L  C  R  V  M  K  G  I  A  L  L  Q  K  S  N  N  N  Q  Q  L  M  R  Q  N  N  K  F  V  Y  N  H  E  D  G  A  V  V  V  G  M  E  D  E  K  E  E  I  I  Q  V  L  L  L  N  S  Q  V  S  S  E  V  D  F  Q  A  V  P  I  W  G  R  S  G  M  G  K  A  T  L  V  N  E  I  Y  N  D  P  R  I  V  K  E  F  G  H  P  H  L  V  N  I  R  L  S  E  N  I  N  A  H  D  A  L  Q  H  V  F  E  L  F  E  G  S  R  I  D  D  K  Y  V  D  M  S  T  T  S  L  E  D  C  V  R  Q  H  L  E  M  S  R  T  L  I  V  L  Q  G  V  G  S  I  D  D  W  R  M  L  R  S  V  L  G  A  K  G  C  I  I  L  I  T  T  R  A  R  Q  V  A  E  S  I  T  Q  A  I  H  I  H  E  K  R  P  L  T  E  E  N  S  W  K  L  F  K  E  M  V  W  P  G  M  Y  I  F  N  R  N  A  I  F  S  T  M  L  F  W  F  K  M  V  Y  M  L  F  L  Y  D  Q  E  E  L  K  S  N  R  Q  Y  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50081" stop="50854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLCRVMKGIALLQKSNNNQQLMRQNNKFVYNHEDGAVVVGMEDEKEEIIQVLLLNSQVSSEVDFQAVPIWGRSGMGKATLVNEIYNDPRIVKEFGHPHLVNIRLSENINAHDALQHVFELFEGSRIDDKYVDMSTTSLEDCVRQHLEMSRTLIVLQGVGSIDDWRMLRSVLGAKGCIILITTRARQVAESITQAIHIHEKRPLTEENSWKLFKEMVWPGMYIFNRNAIFSTMLFWFKMVYMLFLYDQEELKSNRQYW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="52504" PGL_stop="51699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52504" e_stop="51699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="52504" e_stop="51699" e_length="806"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52504" stop="51699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATGAAAGAAGGTGGACGCTTGTGGTTGTGATCATATCTCTCAGTAACCTTTTGAGTAAATGACTCAGGCATCTTTATCATCTTGAATTCTTGAAGAGAATCTAGAAATTCTGAACCATCTGGGAGCGTTACTAGTTCATTGCAGTATTCAATTTTGAGATGAGAAAGCATTGGCATGGCTGAAATTTCTACCCTCCATTTCTCGAATGAGAATAATCTTGAGAGTTCCAAGTGTTTGAGCTCTTGAAAACCCGAAGCAGAACATACCATCTGATTCACTTTGAAAGCATCATCTTCGAGCACCAGAAGCCGTAGGTTGTTGAGTTTTTCTAGTGTTGGCATTGGATCTTCCTCCAGTTGAGTGCTACGTAGGACAATCTCCGTGAAATTTTGAGAGATATCAAAGTATGGTGGTAGCGTTTTAATATAACCCTCAAAAGACACTATTGGTGGAACCCCGGAATTTAATATCTCACGAAAGGCAGAGTGTTTTGTATCTGAATAACAATCAAAGTTTTTAACTTCAAGGGAGCAACGACGAAGCCCCTTATCACTCCTACTTTTCATAAAGTCAGTTATTAAATTAAGATCCTCAACACATACTTCAACCTTTGCATCTAGGTTCCGGAGTTTTTTCAATTTGAAGAGATGGCGTATCTCACACAACTTGGAGTTTAAGTTCTTTAGTGTTTGAAGCTCTGCCAATCCATCAAGTCGGAGTTTTTTCCCATTTTGCAGTTGGAATACTAGTGGAAGATACAAATGTTGCAACCTTGCCATTTTCTGAAACACATTATATGGTATG</gDNA_template>
            <first_frame> L  *  K  K  V  D  A  C  G  C  D  H  I  S  Q  *  P  F  E  *  M  T  Q  A  S  L  S  S  *  I  L  E  E  N  L  E  I  L  N  H  L  G  A  L  L  V  H  C  S  I  Q  F  *  D  E  K  A  L  A  W  L  K  F  L  P  S  I  S  R  M  R  I  I  L  R  V  P  S  V  *  A  L  E  N  P  K  Q  N  I  P  S  D  S  L  *  K  H  H  L  R  A  P  E  A  V  G  C  *  V  F  L  V  L  A  L  D  L  P  P  V  E  C  Y  V  G  Q  S  P  *  N  F  E  R  Y  Q  S  M  V  V  A  F  *  Y  N  P  Q  K  T  L  L  V  E  P  R  N  L  I  S  H  E  R  Q  S  V  L  Y  L  N  N  N  Q  S  F  *  L  Q  G  S  N  D  E  A  P  Y  H  S  Y  F  S  *  S  Q  L  L  N  *  D  P  Q  H  I  L  Q  P  L  H  L  G  S  G  V  F  S  I  *  R  D  G  V  S  H  T  T  W  S  L  S  S  L  V  F  E  A  L  P  I  H  Q  V  G  V  F  S  H  F  A  V  G  I  L  V  E  D  T  N  V  A  T  L  P  F  S  E  T  H  Y  M  V   </first_frame>
            <second_frame>  Y  E  R  R  W  T  L  V  V  V  I  I  S  L  S  N  L  L  S  K  *  L  R  H  L  Y  H  L  E  F  L  K  R  I  *  K  F  *  T  I  W  E  R  Y  *  F  I  A  V  F  N  F  E  M  R  K  H  W  H  G  *  N  F  Y  P  P  F  L  E  *  E  *  S  *  E  F  Q  V  F  E  L  L  K  T  R  S  R  T  Y  H  L  I  H  F  E  S  I  I  F  E  H  Q  K  P  *  V  V  E  F  F  *  C  W  H  W  I  F  L  Q  L  S  A  T  *  D  N  L  R  E  I  L  R  D  I  K  V  W  W  *  R  F  N  I  T  L  K  R  H  Y  W  W  N  P  G  I  *  Y  L  T  K  G  R  V  F  C  I  *  I  T  I  K  V  F  N  F  K  G  A  T  T  K  P  L  I  T  P  T  F  H  K  V  S  Y  *  I  K  I  L  N  T  Y  F  N  L  C  I  *  V  P  E  F  F  Q  F  E  E  M  A  Y  L  T  Q  L  G  V  *  V  L  *  C  L  K  L  C  Q  S  I  K  S  E  F  F  P  I  L  Q  L  E  Y  *  W  K  I  Q  M  L  Q  P  C  H  F  L  K  H  I  I  W  Y  </second_frame>
            <third_frame>   M  K  E  G  G  R  L  W  L  *  S  Y  L  S  V  T  F  *  V  N  D  S  G  I  F  I  I  L  N  S  *  R  E  S  R  N  S  E  P  S  G  S  V  T  S  S  L  Q  Y  S  I  L  R  *  E  S  I  G  M  A  E  I  S  T  L  H  F  S  N  E  N  N  L  E  S  S  K  C  L  S  S  *  K  P  E  A  E  H  T  I  *  F  T  L  K  A  S  S  S  S  T  R  S  R  R  L  L  S  F  S  S  V  G  I  G  S  S  S  S  *  V  L  R  R  T  I  S  V  K  F  *  E  I  S  K  Y  G  G  S  V  L  I  *  P  S  K  D  T  I  G  G  T  P  E  F  N  I  S  R  K  A  E  C  F  V  S  E  *  Q  S  K  F  L  T  S  R  E  Q  R  R  S  P  L  S  L  L  L  F  I  K  S  V  I  K  L  R  S  S  T  H  T  S  T  F  A  S  R  F  R  S  F  F  N  L  K  R  W  R  I  S  H  N  L  E  F  K  F  F  S  V  *  S  S  A  N  P  S  S  R  S  F  F  P  F  C  S  W  N  T  S  G  R  Y  K  C  C  N  L  A  I  F  *  N  T  L  Y  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0207A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="58981" PGL_stop="58613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58981" e_stop="58613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="58981" e_stop="58613" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58981" stop="58613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTATACACCTTGTTCCTCACAATGACAAAATAATCGATCCAAATCTCACCTCTGTAAACATCGAAATAAACAGCTTTTACCAACCTCCTTGGGTTACAAGCTACTTCACCATTCTCTTCTCATTCACACTATTCGGAGTAATCATCTCTATTGCTCAGACTATTTACGCCGTGCTAGCATACCACAAACCCCCATCCTCCCCTACATAACCGTGTGAATTAGTATAAAAATTTGTAGGAAAATAAGAAGATACGAAAATCTCTATCTAATTCAAACTTTTCCCAATGTTTGAACACTTTGATAAATTGTATTTTTTTGTTTTTTGTTTTATACAAACAGTGTCATATCCATATATATGTTATTAACCT</gDNA_template>
            <first_frame> L  I  H  L  V  P  H  N  D  K  I  I  D  P  N  L  T  S  V  N  I  E  I  N  S  F  Y  Q  P  P  W  V  T  S  Y  F  T  I  L  F  S  F  T  L  F  G  V  I  I  S  I  A  Q  T  I  Y  A  V  L  A  Y  H  K  P  P  S  S  P  T  *  P  C  E  L  V  *  K  F  V  G  K  *  E  D  T  K  I  S  I  *  F  K  L  F  P  M  F  E  H  F  D  K  L  Y  F  F  V  F  C  F  I  Q  T  V  S  Y  P  Y  I  C  Y  *  P </first_frame>
            <second_frame>  L  Y  T  L  F  L  T  M  T  K  *  S  I  Q  I  S  P  L  *  T  S  K  *  T  A  F  T  N  L  L  G  L  Q  A  T  S  P  F  S  S  H  S  H  Y  S  E  *  S  S  L  L  L  R  L  F  T  P  C  *  H  T  T  N  P  H  P  P  L  H  N  R  V  N  *  Y  K  N  L  *  E  N  K  K  I  R  K  S  L  S  N  S  N  F  S  Q  C  L  N  T  L  I  N  C  I  F  L  F  F  V  L  Y  K  Q  C  H  I  H  I  Y  V  I  N   </second_frame>
            <third_frame>   Y  T  P  C  S  S  Q  *  Q  N  N  R  S  K  S  H  L  C  K  H  R  N  K  Q  L  L  P  T  S  L  G  Y  K  L  L  H  H  S  L  L  I  H  T  I  R  S  N  H  L  Y  C  S  D  Y  L  R  R  A  S  I  P  Q  T  P  I  L  P  Y  I  T  V  *  I  S  I  K  I  C  R  K  I  R  R  Y  E  N  L  Y  L  I  Q  T  F  P  N  V  *  T  L  *  *  I  V  F  F  C  F  L  F  Y  T  N  S  V  I  S  I  Y  M  L  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58981" stop="58772"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHLVPHNDKIIDPNLTSVNIEINSFYQPPWVTSYFTILFSFTLFGVIISIAQTIYAVLAYHKPPSSPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="61513" PGL_stop="63522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61513" e_stop="62191"/>
            <exon e_start="63085" e_stop="63522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="0.984"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="61513" e_stop="62191" e_length="679"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="62192" i_stop="63084" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="63085" e_stop="63522" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61513" stop="61953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61940" stop="62191"/>
              <exon start="63085" stop="63522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTCTTCCGCCTGATATTTCACTGATATTTTAATTAAGAAAACAAAACTTCTCCTCGTCGCCGTAATCCACCCGCATTTTTTTTTTTGAAAAAAAAAATGCCGCCTCAATTTCACCTTCCCCAAACTATAAAAACTCAACCCGCTAAAAAATTCGACCCGAATGATGACCCAATCATCGTCGTCGATCTCGTATGGCCATTCGGAGATCTAGAAGGACTCGATCGGGATGATTTTCGAGAGGCAGCTTACGAGATTTTCTTCACGGCGTGTAGGTCATCGCCGGGGTTTGGTGGTAGGACGGTGGCAATTTCTTCGTCATCAGACGGGTCGGGTGAAGGAAATGGATCCGGGTCGGGTACGGGTTTATCCGGTCCCGGGTCACCGAAACCGACCGGAGTAGGGATGGCGATAACTAGTAGGGTGAAAACGGCGTTGGGGTTGAAGATGTTGAAGAAGTCTCCGTCGCGGAGAAAGTCCGGTGGCGGTAGTGGTGTTAATGGTCCGTCTTCGCCTGCTGGAGTTGCGAGCCCGAGAACACCCTCGGGCTCGACCATGCAGCAGGCGAAAATGCGGAGGCCATTGACGTCCGCCGAGATTATGAGGTTGCAGATGAGAGTGTCGGAGCAGAGTGATAATAGGCTAAGGAAAACTCTTATGAGAACTCTCGTCGGCCAA : ATTGGGAGGAGAGCAGAGACAATAATCTTACCTTTGGAGCTTTTACGCCACCTTAAACCATCTGAATTCAACGATCCTCAAGAATACCATCTATGGCAAAAGCGTCAGCTTCGTATCCTGGATATAGGCCTACTCCTTCACCCTTCTATCCCAGTAGAAAAAGACAATGCATCTGCATCGCGATTACTAGAGATCATTCAAGCTTGTGAGATCAAAACAATCGACACTAGCAAGAATTCCGAGACGATGAAATCGCTAAGTAATGCAGTAGTCTCCTTAGCTTGGAGAAGTGTTGATGACACTCCTAGTGATACATGTCGTTGGGCTGATGGATTCCCTCTCAACATCCACATTTACACGGCTCTCTTGGGATCGATATTTGATCTTAAAGACGATACGTTAGTCCTTAATGAGGTTGATGAGCTTCTTGAATTGATG</gDNA_template>
            <first_frame> F  P  L  P  P  D  I  S  L  I  F  *  L  R  K  Q  N  F  S  S  S  P  *  S  T  R  I  F  F  F  E  K  K  N  A  A  S  I  S  P  S  P  N  Y  K  N  S  T  R  *  K  I  R  P  E  *  *  P  N  H  R  R  R  S  R  M  A  I  R  R  S  R  R  T  R  S  G  *  F  S  R  G  S  L  R  D  F  L  H  G  V  *  V  I  A  G  V  W  W  *  D  G  G  N  F  F  V  I  R  R  V  G  *  R  K  W  I  R  V  G  Y  G  F  I  R  S  R  V  T  E  T  D  R  S  R  D  G  D  N  *  *  G  E  N  G  V  G  V  E  D  V  E  E  V  S  V  A  E  K  V  R  W  R  *  W  C  *  W  S  V  F  A  C  W  S  C  E  P  E  N  T  L  G  L  D  H  A  A  G  E  N  A  E  A  I  D  V  R  R  D  Y  E  V  A  D  E  S  V  G  A  E  *  *  *  A  K  E  N  S  Y  E  N  S  R  R  P   : N  W  E  E  S  R  D  N  N  L  T  F  G  A  F  T  P  P  *  T  I  *  I  Q  R  S  S  R  I  P  S  M  A  K  A  S  A  S  Y  P  G  Y  R  P  T  P  S  P  F  Y  P  S  R  K  R  Q  C  I  C  I  A  I  T  R  D  H  S  S  L  *  D  Q  N  N  R  H  *  Q  E  F  R  D  D  E  I  A  K  *  C  S  S  L  L  S  L  E  K  C  *  *  H  S  *  *  Y  M  S  L  G  *  W  I  P  S  Q  H  P  H  L  H  G  S  L  G  I  D  I  *  S  *  R  R  Y  V  S  P  *  *  G  *  *  A  S  *  I  D  </first_frame>
            <second_frame>  S  L  F  R  L  I  F  H  *  Y  F  N  *  E  N  K  T  S  P  R  R  R  N  P  P  A  F  F  F  L  K  K  K  M  P  P  Q  F  H  L  P  Q  T  I  K  T  Q  P  A  K  K  F  D  P  N  D  D  P  I  I  V  V  D  L  V  W  P  F  G  D  L  E  G  L  D  R  D  D  F  R  E  A  A  Y  E  I  F  F  T  A  C  R  S  S  P  G  F  G  G  R  T  V  A  I  S  S  S  S  D  G  S  G  E  G  N  G  S  G  S  G  T  G  L  S  G  P  G  S  P  K  P  T  G  V  G  M  A  I  T  S  R  V  K  T  A  L  G  L  K  M  L  K  K  S  P  S  R  R  K  S  G  G  G  S  G  V  N  G  P  S  S  P  A  G  V  A  S  P  R  T  P  S  G  S  T  M  Q  Q  A  K  M  R  R  P  L  T  S  A  E  I  M  R  L  Q  M  R  V  S  E  Q  S  D  N  R  L  R  K  T  L  M  R  T  L  V  G  Q  :  I  G  R  R  A  E  T  I  I  L  P  L  E  L  L  R  H  L  K  P  S  E  F  N  D  P  Q  E  Y  H  L  W  Q  K  R  Q  L  R  I  L  D  I  G  L  L  L  H  P  S  I  P  V  E  K  D  N  A  S  A  S  R  L  L  E  I  I  Q  A  C  E  I  K  T  I  D  T  S  K  N  S  E  T  M  K  S  L  S  N  A  V  V  S  L  A  W  R  S  V  D  D  T  P  S  D  T  C  R  W  A  D  G  F  P  L  N  I  H  I  Y  T  A  L  L  G  S  I  F  D  L  K  D  D  T  L  V  L  N  E  V  D  E  L  L  E  L  M </second_frame>
            <third_frame>   P  S  S  A  *  Y  F  T  D  I  L  I  K  K  T  K  L  L  L  V  A  V  I  H  P  H  F  F  F  *  K  K  K  C  R  L  N  F  T  F  P  K  L  *  K  L  N  P  L  K  N  S  T  R  M  M  T  Q  S  S  S  S  I  S  Y  G  H  S  E  I  *  K  D  S  I  G  M  I  F  E  R  Q  L  T  R  F  S  S  R  R  V  G  H  R  R  G  L  V  V  G  R  W  Q  F  L  R  H  Q  T  G  R  V  K  E  M  D  P  G  R  V  R  V  Y  P  V  P  G  H  R  N  R  P  E  *  G  W  R  *  L  V  G  *  K  R  R  W  G  *  R  C  *  R  S  L  R  R  G  E  S  P  V  A  V  V  V  L  M  V  R  L  R  L  L  E  L  R  A  R  E  H  P  R  A  R  P  C  S  R  R  K  C  G  G  H  *  R  P  P  R  L  *  G  C  R  *  E  C  R  S  R  V  I  I  G  *  G  K  L  L  *  E  L  S  S  A  K :   L  G  G  E  Q  R  Q  *  S  Y  L  W  S  F  Y  A  T  L  N  H  L  N  S  T  I  L  K  N  T  I  Y  G  K  S  V  S  F  V  S  W  I  *  A  Y  S  F  T  L  L  S  Q  *  K  K  T  M  H  L  H  R  D  Y  *  R  S  F  K  L  V  R  S  K  Q  S  T  L  A  R  I  P  R  R  *  N  R  *  V  M  Q  *  S  P  *  L  G  E  V  L  M  T  L  L  V  I  H  V  V  G  L  M  D  S  L  S  T  S  T  F  T  R  L  S  W  D  R  Y  L  I  L  K  T  I  R  *  S  L  M  R  L  M  S  F  L  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61553" stop="62191"/>
                    <exon start="63085" stop="63522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENKTSPRRRNPPAFFFLKKKMPPQFHLPQTIKTQPAKKFDPNDDPIIVVDLVWPFGDLEGLDRDDFREAAYEIFFTACRSSPGFGGRTVAISSSSDGSGEGNGSGSGTGLSGPGSPKPTGVGMAITSRVKTALGLKMLKKSPSRRKSGGGSGVNGPSSPAGVASPRTPSGSTMQQAKMRRPLTSAEIMRLQMRVSEQSDNRLRKTLMRTLVGQIGRRAETIILPLELLRHLKPSEFNDPQEYHLWQKRQLRILDIGLLLHPSIPVEKDNASASRLLEIIQACEIKTIDTSKNSETMKSLSNAVVSLAWRSVDDTPSDTCRWADGFPLNIHIYTALLGSIFDLKDDTLVLNEVDELLELM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="64477" PGL_stop="65342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64477" e_stop="64496"/>
            <exon e_start="64850" e_stop="65036"/>
            <exon e_start="65119" e_stop="65342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.200" acc_prob="0.846" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64477" e_stop="64496" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64497" i_stop="64849" i_length="353"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64850" e_stop="65036" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.200" acc_prob="0.846">
            <gDNA_intron_boundary i_start="65037" i_stop="65118" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65119" e_stop="65342" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64477" stop="64496"/>
              <exon start="64850" stop="65036"/>
              <exon start="65119" stop="65342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGATCAAAAGACTCTGAA : ACATGGAATCCAAAATCCAAAAGTGAGCCATATGCACAATCAGCAATTGATCTAGTGAGACATTCCAAGGAAGCAGTAGACAATTTCTTCGAAATTCCTACAATCATTACTGAGAATTTGGTTAATGATATCGCTGATGGCATCGAGAACTTATTCAAAGATTATGTTATCTTTGTTGCATCATGTG : GGGCTAAACAGAACTACATGCCTGCACTTCCTCCTTTGACAAGATGCGGCCAAGACTCAAAATTTGTGAAGATGTGGAAGAAAGCTGCCTGTAGTGTCGGATCAAACGATCCAAACCAGCATTTGACAGACGAAGATAACAATCCCCGTCCTTCAACAAGCCGAGGAACTCAACGCCTCTATGTAAGGCTTAACACCTTGCATTACCTCCTTCAACAACTCAAT</gDNA_template>
            <first_frame> *  D  Q  K  T  L  K :   H  G  I  Q  N  P  K  V  S  H  M  H  N  Q  Q  L  I  *  *  D  I  P  R  K  Q  *  T  I  S  S  K  F  L  Q  S  L  L  R  I  W  L  M  I  S  L  M  A  S  R  T  Y  S  K  I  M  L  S  L  L  H  H  V  :  G  L  N  R  T  T  C  L  H  F  L  L  *  Q  D  A  A  K  T  Q  N  L  *  R  C  G  R  K  L  P  V  V  S  D  Q  T  I  Q  T  S  I  *  Q  T  K  I  T  I  P  V  L  Q  Q  A  E  E  L  N  A  S  M  *  G  L  T  P  C  I  T  S  F  N  N  S   </first_frame>
            <second_frame>  E  I  K  R  L  *   : N  M  E  S  K  I  Q  K  *  A  I  C  T  I  S  N  *  S  S  E  T  F  Q  G  S  S  R  Q  F  L  R  N  S  Y  N  H  Y  *  E  F  G  *  *  Y  R  *  W  H  R  E  L  I  Q  R  L  C  Y  L  C  C  I  M  W :   G  *  T  E  L  H  A  C  T  S  S  F  D  K  M  R  P  R  L  K  I  C  E  D  V  E  E  S  C  L  *  C  R  I  K  R  S  K  P  A  F  D  R  R  R  *  Q  S  P  S  F  N  K  P  R  N  S  T  P  L  C  K  A  *  H  L  A  L  P  P  S  T  T  Q  </second_frame>
            <third_frame>   R  S  K  D  S  E  :  T  W  N  P  K  S  K  S  E  P  Y  A  Q  S  A  I  D  L  V  R  H  S  K  E  A  V  D  N  F  F  E  I  P  T  I  I  T  E  N  L  V  N  D  I  A  D  G  I  E  N  L  F  K  D  Y  V  I  F  V  A  S  C   : G  A  K  Q  N  Y  M  P  A  L  P  P  L  T  R  C  G  Q  D  S  K  F  V  K  M  W  K  K  A  A  C  S  V  G  S  N  D  P  N  Q  H  L  T  D  E  D  N  N  P  R  P  S  T  S  R  G  T  Q  R  L  Y  V  R  L  N  T  L  H  Y  L  L  Q  Q  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64479" stop="64496"/>
                    <exon start="64850" stop="65036"/>
                    <exon start="65119" stop="65342"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSKDSETWNPKSKSEPYAQSAIDLVRHSKEAVDNFFEIPTIITENLVNDIADGIENLFKDYVIFVASCGAKQNYMPALPPLTRCGQDSKFVKMWKKAACSVGSNDPNQHLTDEDNNPRPSTSRGTQRLYVRLNTLHYLLQQLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="65500" PGL_stop="66519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65500" e_stop="66519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="65500" e_stop="66519" e_length="1020"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65500" stop="66519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTAATGTTCTTCGATTCCAACTCTGTCTTCTACGCAAGCCTATACGTAGGGGACGTAGAGAATGCACGTATTCGACCAGCTCTAAGGATACTCAAACAAAACCTAACTCTTTTGTGTGCTATCCTCACTGACCGGGCTCAAGCATTAGCGCTTAAAGAAGTCATGAGAGCGTCTTTCGGGGCATACCTTATGGTTTTACTAGCCGGTGGACCGCGAAGAAACTTCTTTAGGATGGATCATCAAATGATTGAGGAAGATTTTGAAAGTTTAAAGAAGGTATTTTGTACTTGTGGTGAAGGTTTGATACTAGAAGATGTTGTGGAAAAAGAAGCTGCAATAGTTGAAGAGATAGTGTCTTTAATGGGACAATCAACAGAACAATTGGTTGAAGATTTTAGCAATTTGGCTTGTGAAACAAGTGGAGCTGGAGTTGTTGTGGGAAATGGAGAAAAATTGCCTATGCCACCAACAACAGGAAAATGGAATAGATCAGATGCTAACACAATCTTGAGGGTACTTTGTCATAGAAATGATAAAATTGCTAATAATTTCTTGAAGAAAACATTCCACTTGGCAAAGAGGAGGGGTTGAAAAACAATTTGATCTAAAAAAAGCCGTCAACTCGGACCCTCTACTGTCGTATCTGTGTCAGATCCTTCTAAAATCACACACCAAACAGTATGTTTGAAGAGTCAGAGCAACATAAGCCTAAAAGACGGAAGAAGAGAGGTTTCACTTGTACATACAAATGAAGAAGAAAGTAAAATTTTCTAAGTATATATGCTATTAATTAAAGTTTATTTTTATTTGAAGGATGTAAATTAAAGCCTTCTAGACTATAAAAAAGGTTTGTAACTTTGAACTAAATTTTTTCTAAAGTATATATGCTATGAAAGTGTTCTTTTTTTTTCTTTTTAAAGGATTTGTAAAGTAAAGCCTTCTTGAATATAAAAAAGGTTTGTAAATGAGTATCTTGAGAATATTGTATAATGCTTTTGATCTTTATCTAAATTACTCG</gDNA_template>
            <first_frame> V  *  C  S  S  I  P  T  L  S  S  T  Q  A  Y  T  *  G  T  *  R  M  H  V  F  D  Q  L  *  G  Y  S  N  K  T  *  L  F  C  V  L  S  S  L  T  G  L  K  H  *  R  L  K  K  S  *  E  R  L  S  G  H  T  L  W  F  Y  *  P  V  D  R  E  E  T  S  L  G  W  I  I  K  *  L  R  K  I  L  K  V  *  R  R  Y  F  V  L  V  V  K  V  *  Y  *  K  M  L  W  K  K  K  L  Q  *  L  K  R  *  C  L  *  W  D  N  Q  Q  N  N  W  L  K  I  L  A  I  W  L  V  K  Q  V  E  L  E  L  L  W  E  M  E  K  N  C  L  C  H  Q  Q  Q  E  N  G  I  D  Q  M  L  T  Q  S  *  G  Y  F  V  I  E  M  I  K  L  L  I  I  S  *  R  K  H  S  T  W  Q  R  G  G  V  E  K  Q  F  D  L  K  K  A  V  N  S  D  P  L  L  S  Y  L  C  Q  I  L  L  K  S  H  T  K  Q  Y  V  *  R  V  R  A  T  *  A  *  K  T  E  E  E  R  F  H  L  Y  I  Q  M  K  K  K  V  K  F  S  K  Y  I  C  Y  *  L  K  F  I  F  I  *  R  M  *  I  K  A  F  *  T  I  K  K  V  C  N  F  E  L  N  F  F  *  S  I  Y  A  M  K  V  F  F  F  F  L  F  K  G  F  V  K  *  S  L  L  E  Y  K  K  G  L  *  M  S  I  L  R  I  L  Y  N  A  F  D  L  Y  L  N  Y  S </first_frame>
            <second_frame>  S  N  V  L  R  F  Q  L  C  L  L  R  K  P  I  R  R  G  R  R  E  C  T  Y  S  T  S  S  K  D  T  Q  T  K  P  N  S  F  V  C  Y  P  H  *  P  G  S  S  I  S  A  *  R  S  H  E  S  V  F  R  G  I  P  Y  G  F  T  S  R  W  T  A  K  K  L  L  *  D  G  S  S  N  D  *  G  R  F  *  K  F  K  E  G  I  L  Y  L  W  *  R  F  D  T  R  R  C  C  G  K  R  S  C  N  S  *  R  D  S  V  F  N  G  T  I  N  R  T  I  G  *  R  F  *  Q  F  G  L  *  N  K  W  S  W  S  C  C  G  K  W  R  K  I  A  Y  A  T  N  N  R  K  M  E  *  I  R  C  *  H  N  L  E  G  T  L  S  *  K  *  *  N  C  *  *  F  L  E  E  N  I  P  L  G  K  E  E  G  L  K  N  N  L  I  *  K  K  P  S  T  R  T  L  Y  C  R  I  C  V  R  S  F  *  N  H  T  P  N  S  M  F  E  E  S  E  Q  H  K  P  K  R  R  K  K  R  G  F  T  C  T  Y  K  *  R  R  K  *  N  F  L  S  I  Y  A  I  N  *  S  L  F  L  F  E  G  C  K  L  K  P  S  R  L  *  K  R  F  V  T  L  N  *  I  F  S  K  V  Y  M  L  *  K  C  S  F  F  F  F  L  K  D  L  *  S  K  A  F  L  N  I  K  K  V  C  K  *  V  S  *  E  Y  C  I  M  L  L  I  F  I  *  I  T   </second_frame>
            <third_frame>   L  M  F  F  D  S  N  S  V  F  Y  A  S  L  Y  V  G  D  V  E  N  A  R  I  R  P  A  L  R  I  L  K  Q  N  L  T  L  L  C  A  I  L  T  D  R  A  Q  A  L  A  L  K  E  V  M  R  A  S  F  G  A  Y  L  M  V  L  L  A  G  G  P  R  R  N  F  F  R  M  D  H  Q  M  I  E  E  D  F  E  S  L  K  K  V  F  C  T  C  G  E  G  L  I  L  E  D  V  V  E  K  E  A  A  I  V  E  E  I  V  S  L  M  G  Q  S  T  E  Q  L  V  E  D  F  S  N  L  A  C  E  T  S  G  A  G  V  V  V  G  N  G  E  K  L  P  M  P  P  T  T  G  K  W  N  R  S  D  A  N  T  I  L  R  V  L  C  H  R  N  D  K  I  A  N  N  F  L  K  K  T  F  H  L  A  K  R  R  G  *  K  T  I  *  S  K  K  S  R  Q  L  G  P  S  T  V  V  S  V  S  D  P  S  K  I  T  H  Q  T  V  C  L  K  S  Q  S  N  I  S  L  K  D  G  R  R  E  V  S  L  V  H  T  N  E  E  E  S  K  I  F  *  V  Y  M  L  L  I  K  V  Y  F  Y  L  K  D  V  N  *  S  L  L  D  Y  K  K  G  L  *  L  *  T  K  F  F  L  K  Y  I  C  Y  E  S  V  L  F  F  S  F  *  R  I  C  K  V  K  P  S  *  I  *  K  R  F  V  N  E  Y  L  E  N  I  V  *  C  F  *  S  L  S  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65502" stop="66092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMFFDSNSVFYASLYVGDVENARIRPALRILKQNLTLLCAILTDRAQALALKEVMRASFGAYLMVLLAGGPRRNFFRMDHQMIEEDFESLKKVFCTCGEGLILEDVVEKEAAIVEEIVSLMGQSTEQLVEDFSNLACETSGAGVVVGNGEKLPMPPTTGKWNRSDANTILRVLCHRNDKIANNFLKKTFHLAKRRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="69900" PGL_stop="70942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69900" e_stop="70942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="69900" e_stop="70942" e_length="1043"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69900" stop="70942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTGAAACATGAATTTGAAAATAAGATCCAACAATGTCAGGAAACAGCAAATGAATTCGTAGAGACAGAAAGGAGGAAAATGGAAGAAAGAATGTTCCAACAGCAACAAGAGTTTGAAATGCTTAGAAGACGGTTGGAGGAGATTGAGTCCGAGCTTTGGCATTCAAGAGTTGGCAGCAGATCAACTGAAGTGGAGGAGAACAGCTTTGGGAAAAGACTACTGGAGATGTATTCTGAAGACGCGGGAATGGTGAAATCTATGGATTTGGATAGATCAATTGATATGGACTGTGGAAAGAAAGCAGAAAGTAACATAATTCAGGCAATGTTGGGCTATCCTAGCATAACCAATGCAAGAGAAATTGAAGATCCTTCTATCTTATTGCAACATTTCACCAACAAATCATTCTTGAGCACCGTGTTCGAAGAGGAAGAAGAAGGTAACGACAGTGAAGGGGATAAAGAGAATCCTTACGTCGAGGAGGTGCAAAAAGAGGTCATTGAGGAAAAGACAATATGTTCCGACAATGTAAGTAGAGTAGAAGATCGTTCCGATGATCTCTCTAGTGACAACACAGCCCCTTCCAGAAAAGAGCTAATTCAAAATATATTCAAACTCTGCGGAAATTCTAGAGAACTCTCTCAGCAATGTATTACTACCCCCTCAGTGCCTGCAGAAAAGAGAGTTAAAGACACTGAATCAAAATCACCTCCAGTTAAAGAAATTGTAGAGAATTCACCTATAACAAAAAATCATAATTTCTCTACTGAGAAAGTAAATGATTCAAAGGAGAACTTCAACCCGAATTCAGAGTTGAAATGGGAAGCTGCATCAAAGGAGAATCCCATGATTATCACTACACTAACGGATCGTTTGGTTTGAAAGACAAGTTATGATGGGATTAGTTGTGCTCAGACTATTTATCCTGGATTACTTATCCTGAGATTATTTCTTATTGTTTGTTTCGCTTGTTGTATTAAAGACAATACGCATTGTATTCTTTCGAAGAAAAAGTTGTTTGTATCTGAACATACACTCCA</gDNA_template>
            <first_frame> M  L  K  H  E  F  E  N  K  I  Q  Q  C  Q  E  T  A  N  E  F  V  E  T  E  R  R  K  M  E  E  R  M  F  Q  Q  Q  Q  E  F  E  M  L  R  R  R  L  E  E  I  E  S  E  L  W  H  S  R  V  G  S  R  S  T  E  V  E  E  N  S  F  G  K  R  L  L  E  M  Y  S  E  D  A  G  M  V  K  S  M  D  L  D  R  S  I  D  M  D  C  G  K  K  A  E  S  N  I  I  Q  A  M  L  G  Y  P  S  I  T  N  A  R  E  I  E  D  P  S  I  L  L  Q  H  F  T  N  K  S  F  L  S  T  V  F  E  E  E  E  E  G  N  D  S  E  G  D  K  E  N  P  Y  V  E  E  V  Q  K  E  V  I  E  E  K  T  I  C  S  D  N  V  S  R  V  E  D  R  S  D  D  L  S  S  D  N  T  A  P  S  R  K  E  L  I  Q  N  I  F  K  L  C  G  N  S  R  E  L  S  Q  Q  C  I  T  T  P  S  V  P  A  E  K  R  V  K  D  T  E  S  K  S  P  P  V  K  E  I  V  E  N  S  P  I  T  K  N  H  N  F  S  T  E  K  V  N  D  S  K  E  N  F  N  P  N  S  E  L  K  W  E  A  A  S  K  E  N  P  M  I  I  T  T  L  T  D  R  L  V  *  K  T  S  Y  D  G  I  S  C  A  Q  T  I  Y  P  G  L  L  I  L  R  L  F  L  I  V  C  F  A  C  C  I  K  D  N  T  H  C  I  L  S  K  K  K  L  F  V  S  E  H  T  L   </first_frame>
            <second_frame>  C  *  N  M  N  L  K  I  R  S  N  N  V  R  K  Q  Q  M  N  S  *  R  Q  K  G  G  K  W  K  K  E  C  S  N  S  N  K  S  L  K  C  L  E  D  G  W  R  R  L  S  P  S  F  G  I  Q  E  L  A  A  D  Q  L  K  W  R  R  T  A  L  G  K  D  Y  W  R  C  I  L  K  T  R  E  W  *  N  L  W  I  W  I  D  Q  L  I  W  T  V  E  R  K  Q  K  V  T  *  F  R  Q  C  W  A  I  L  A  *  P  M  Q  E  K  L  K  I  L  L  S  Y  C  N  I  S  P  T  N  H  S  *  A  P  C  S  K  R  K  K  K  V  T  T  V  K  G  I  K  R  I  L  T  S  R  R  C  K  K  R  S  L  R  K  R  Q  Y  V  P  T  M  *  V  E  *  K  I  V  P  M  I  S  L  V  T  T  Q  P  L  P  E  K  S  *  F  K  I  Y  S  N  S  A  E  I  L  E  N  S  L  S  N  V  L  L  P  P  Q  C  L  Q  K  R  E  L  K  T  L  N  Q  N  H  L  Q  L  K  K  L  *  R  I  H  L  *  Q  K  I  I  I  S  L  L  R  K  *  M  I  Q  R  R  T  S  T  R  I  Q  S  *  N  G  K  L  H  Q  R  R  I  P  *  L  S  L  H  *  R  I  V  W  F  E  R  Q  V  M  M  G  L  V  V  L  R  L  F  I  L  D  Y  L  S  *  D  Y  F  L  L  F  V  S  L  V  V  L  K  T  I  R  I  V  F  F  R  R  K  S  C  L  Y  L  N  I  H  S  </second_frame>
            <third_frame>   V  E  T  *  I  *  K  *  D  P  T  M  S  G  N  S  K  *  I  R  R  D  R  K  E  E  N  G  R  K  N  V  P  T  A  T  R  V  *  N  A  *  K  T  V  G  G  D  *  V  R  A  L  A  F  K  S  W  Q  Q  I  N  *  S  G  G  E  Q  L  W  E  K  T  T  G  D  V  F  *  R  R  G  N  G  E  I  Y  G  F  G  *  I  N  *  Y  G  L  W  K  E  S  R  K  *  H  N  S  G  N  V  G  L  S  *  H  N  Q  C  K  R  N  *  R  S  F  Y  L  I  A  T  F  H  Q  Q  I  I  L  E  H  R  V  R  R  G  R  R  R  *  R  Q  *  R  G  *  R  E  S  L  R  R  G  G  A  K  R  G  H  *  G  K  D  N  M  F  R  Q  C  K  *  S  R  R  S  F  R  *  S  L  *  *  Q  H  S  P  F  Q  K  R  A  N  S  K  Y  I  Q  T  L  R  K  F  *  R  T  L  S  A  M  Y  Y  Y  P  L  S  A  C  R  K  E  S  *  R  H  *  I  K  I  T  S  S  *  R  N  C  R  E  F  T  Y  N  K  K  S  *  F  L  Y  *  E  S  K  *  F  K  G  E  L  Q  P  E  F  R  V  E  M  G  S  C  I  K  G  E  S  H  D  Y  H  Y  T  N  G  S  F  G  L  K  D  K  L  *  W  D  *  L  C  S  D  Y  L  S  W  I  T  Y  P  E  I  I  S  Y  C  L  F  R  L  L  Y  *  R  Q  Y  A  L  Y  S  F  E  E  K  V  V  C  I  *  T  Y  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69900" stop="70784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLKHEFENKIQQCQETANEFVETERRKMEERMFQQQQEFEMLRRRLEEIESELWHSRVGSRSTEVEENSFGKRLLEMYSEDAGMVKSMDLDRSIDMDCGKKAESNIIQAMLGYPSITNAREIEDPSILLQHFTNKSFLSTVFEEEEEGNDSEGDKENPYVEEVQKEVIEEKTICSDNVSRVEDRSDDLSSDNTAPSRKELIQNIFKLCGNSRELSQQCITTPSVPAEKRVKDTESKSPPVKEIVENSPITKNHNFSTEKVNDSKENFNPNSELKWEAASKENPMIITTLTDRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="78455" PGL_stop="76156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78455" e_stop="78274"/>
            <exon e_start="78168" e_stop="77574"/>
            <exon e_start="77443" e_stop="77331"/>
            <exon e_start="77221" e_stop="77001"/>
            <exon e_start="76714" e_stop="76156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.998"/>
          <exon-intron don_prob="0.747" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.995"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78455" e_stop="78274" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78273" i_stop="78169" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="78168" e_stop="77574" e_length="595"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="77573" i_stop="77444" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77443" e_stop="77331" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.747" acc_prob="0.975">
            <gDNA_intron_boundary i_start="77330" i_stop="77222" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="77221" e_stop="77001" e_length="221"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77000" i_stop="76715" i_length="286"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="76714" e_stop="76156" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78455" stop="78274"/>
              <exon start="78168" stop="77574"/>
              <exon start="77443" stop="77331"/>
              <exon start="77221" stop="77001"/>
              <exon start="76714" stop="76193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77177" stop="77001"/>
              <exon start="76714" stop="76156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCAATTAAGTGGCCAAGAAGTAGAGATGAGGTCTGGAAATTGAACATTCCTCATACGCACCTTGCAAATGAGAAATCTGACCAGAACTGGATGGTTGTGAAGGGTGAAAAGATAGTATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCAGATAAGTACATTGCGCTAATTGCCAAC : ATGCTGAACTTTACAAACAATAACTTGAACGATGAGGGAAGGATACGGACAGTTTTTGATGTTGGTTGCGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCCTCTGATATTATAGCAATGTCATTGGCACCAAATGATGTGCATCAGAATCAAATACAGTTTGCTTTAGAGAGAGGAATTCCTGCATACCTTGGTGTCCTTGGAACGAAAAGACTGCCTTATCCAAGCAGGTCATTTGAATTTTCTCACTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGGGATGGAATCCTTCTCCTTGAGCTCGATAGGGTACTTAGGCCTGGAGGCTATTTTGCATACTCATCCCCTGAAGCATATGCACAGGATGAAGAGGATTTAAGAATATGGAGAGAGATGAGTACACTTGTTGAACGCATGTGCTGGAGAATTGCAGCGAAAAAGAACCAAACTGTCATTTGGCAAAAACCTCTAAACAATGATTGTTACATGGAAAGACCTCCTGGTACGCAGCCACCACTCTGTCGATCTGATAATGATCCAGATGCTGTCTGGGGTGTGAATATGGAGGCATGCATAACACCTTATTCTGAAC : ATGACCACAAAGTCAGTGGAAGTGGACTGGCTCCTTGGCCAGCTCGATTAAGTAGTCCTCCTCCCCGTCTTGCTGACTTTGGGTATTCGAATGAAATGTTTGAAAAGGACACG : GACACTTGGAGGGAGAGGGTTGACCATTATTGGAGTCTGTTAAGTTCTAAGATTTCATCAGACACCTTGAGAAATATCATGGACATGAAGGCTAACTTGGGGTCATTTGCTGCTTCTCTGAAGGACAAAAACGTATGGGTCATGAACGTTGTACCCAAAGATGGACCCAACACTCTCAAGATTGTATACGACCGAGGCTTGATTGGCACAACACATGACTG : GTGTGAAGCATTCTCAACCTATCCCAGGACCTATGATTTGCTCCACGCTTGGACAGTCTTCTCTGATGCTGAGAAGAAAGGTTGCAGTGGTGAGGACTTGTTACTCGAGATTGATCGCATACTAAGGCCTACAGGTTTCGTTATCATCCGTGATAAACAACATATTATCGAATTCATAAAGAAGCATTTATCAGCATTGCACTGGGAAGCAGTTGCATCAACTGATTCCACCTCGGATCCCGAGCAGGACAACGATGAGGTTGTTTTCGTCGTGCAAAAGAAACTGTGGCTCACAAGTGGAAGCATCAGAGATACAGAATAGATAGCAGAGTTTGTAACACATTTTGCTAATTCATTTTCTCTCTAGGCCTTTAGGGTGTTGAAGAAAAAAAAAATGTATGCCCTTAATTTTCAGTTTGAATTTGTATTTGCGTGTTATTTATTTTCTTTTTTTACTCCCAACGCATTTTTATGTAAGTTTACAAACTGAGAGACTACATAATGTATTCATAGGCTATTTTTTTTTTATAATTAACGTATTTTAATATTTGATCATTTT</gDNA_template>
            <first_frame> C  Q  L  S  G  Q  E  V  E  M  R  S  G  N  *  T  F  L  I  R  T  L  Q  M  R  N  L  T  R  T  G  W  L  *  R  V  K  R  *  Y  F  L  V  E  A  L  T  F  T  M  E  Q  I  S  T  L  R  *  L  P  T :   C  *  T  L  Q  T  I  T  *  T  M  R  E  G  Y  G  Q  F  L  M  L  V  A  V  W  L  A  L  V  V  I  F  Y  P  L  I  L  *  Q  C  H  W  H  Q  M  M  C  I  R  I  K  Y  S  L  L  *  R  E  E  F  L  H  T  L  V  S  L  E  R  K  D  C  L  I  Q  A  G  H  L  N  F  L  T  V  L  V  V  G  L  I  G  F  K  G  M  E  S  F  S  L  S  S  I  G  Y  L  G  L  E  A  I  L  H  T  H  P  L  K  H  M  H  R  M  K  R  I  *  E  Y  G  E  R  *  V  H  L  L  N  A  C  A  G  E  L  Q  R  K  R  T  K  L  S  F  G  K  N  L  *  T  M  I  V  T  W  K  D  L  L  V  R  S  H  H  S  V  D  L  I  M  I  Q  M  L  S  G  V  *  I  W  R  H  A  *  H  L  I  L  N  :  M  T  T  K  S  V  E  V  D  W  L  L  G  Q  L  D  *  V  V  L  L  P  V  L  L  T  L  G  I  R  M  K  C  L  K  R  T  R :   T  L  G  G  R  G  L  T  I  I  G  V  C  *  V  L  R  F  H  Q  T  P  *  E  I  S  W  T  *  R  L  T  W  G  H  L  L  L  L  *  R  T  K  T  Y  G  S  *  T  L  Y  P  K  M  D  P  T  L  S  R  L  Y  T  T  E  A  *  L  A  Q  H  M  T   : G  V  K  H  S  Q  P  I  P  G  P  M  I  C  S  T  L  G  Q  S  S  L  M  L  R  R  K  V  A  V  V  R  T  C  Y  S  R  L  I  A  Y  *  G  L  Q  V  S  L  S  S  V  I  N  N  I  L  S  N  S  *  R  S  I  Y  Q  H  C  T  G  K  Q  L  H  Q  L  I  P  P  R  I  P  S  R  T  T  M  R  L  F  S  S  C  K  R  N  C  G  S  Q  V  E  A  S  E  I  Q  N  R  *  Q  S  L  *  H  I  L  L  I  H  F  L  S  R  P  L  G  C  *  R  K  K  K  C  M  P  L  I  F  S  L  N  L  Y  L  R  V  I  Y  F  L  F  L  L  P  T  H  F  Y  V  S  L  Q  T  E  R  L  H  N  V  F  I  G  Y  F  F  F  I  I  N  V  F  *  Y  L  I  I   </first_frame>
            <second_frame>  A  N  *  V  A  K  K  *  R  *  G  L  E  I  E  H  S  S  Y  A  P  C  K  *  E  I  *  P  E  L  D  G  C  E  G  *  K  D  S  I  S  W  W  R  H  S  L  S  L  W  S  R  *  V  H  C  A  N  C  Q   : H  A  E  L  Y  K  Q  *  L  E  R  *  G  K  D  T  D  S  F  *  C  W  L  R  C  G  *  L  W  W  L  S  S  I  L  *  Y  Y  S  N  V  I  G  T  K  *  C  A  S  E  S  N  T  V  C  F  R  E  R  N  S  C  I  P  W  C  P  W  N  E  K  T  A  L  S  K  Q  V  I  *  I  F  S  L  F  S  L  *  D  *  L  A  S  K  G  W  N  P  S  P  *  A  R  *  G  T  *  A  W  R  L  F  C  I  L  I  P  *  S  I  C  T  G  *  R  G  F  K  N  M  E  R  D  E  Y  T  C  *  T  H  V  L  E  N  C  S  E  K  E  P  N  C  H  L  A  K  T  S  K  Q  *  L  L  H  G  K  T  S  W  Y  A  A  T  T  L  S  I  *  *  *  S  R  C  C  L  G  C  E  Y  G  G  M  H  N  T  L  F  *  T :   *  P  Q  S  Q  W  K  W  T  G  S  L  A  S  S  I  K  *  S  S  S  P  S  C  *  L  W  V  F  E  *  N  V  *  K  G  H   : G  H  L  E  G  E  G  *  P  L  L  E  S  V  K  F  *  D  F  I  R  H  L  E  K  Y  H  G  H  E  G  *  L  G  V  I  C  C  F  S  E  G  Q  K  R  M  G  H  E  R  C  T  Q  R  W  T  Q  H  S  Q  D  C  I  R  P  R  L  D  W  H  N  T  *  L  :  V  *  S  I  L  N  L  S  Q  D  L  *  F  A  P  R  L  D  S  L  L  *  C  *  E  E  R  L  Q  W  *  G  L  V  T  R  D  *  S  H  T  K  A  Y  R  F  R  Y  H  P  *  *  T  T  Y  Y  R  I  H  K  E  A  F  I  S  I  A  L  G  S  S  C  I  N  *  F  H  L  G  S  R  A  G  Q  R  *  G  C  F  R  R  A  K  E  T  V  A  H  K  W  K  H  Q  R  Y  R  I  D  S  R  V  C  N  T  F  C  *  F  I  F  S  L  G  L  *  G  V  E  E  K  K  N  V  C  P  *  F  S  V  *  I  C  I  C  V  L  F  I  F  F  F  Y  S  Q  R  I  F  M  *  V  Y  K  L  R  D  Y  I  M  Y  S  *  A  I  F  F  L  *  L  T  Y  F  N  I  *  S  F  </second_frame>
            <third_frame>   P  I  K  W  P  R  S  R  D  E  V  W  K  L  N  I  P  H  T  H  L  A  N  E  K  S  D  Q  N  W  M  V  V  K  G  E  K  I  V  F  P  G  G  G  T  H  F  H  Y  G  A  D  K  Y  I  A  L  I  A  N  :  M  L  N  F  T  N  N  N  L  N  D  E  G  R  I  R  T  V  F  D  V  G  C  G  V  A  S  F  G  G  Y  L  L  S  S  D  I  I  A  M  S  L  A  P  N  D  V  H  Q  N  Q  I  Q  F  A  L  E  R  G  I  P  A  Y  L  G  V  L  G  T  K  R  L  P  Y  P  S  R  S  F  E  F  S  H  C  S  R  C  R  I  D  W  L  Q  R  D  G  I  L  L  L  E  L  D  R  V  L  R  P  G  G  Y  F  A  Y  S  S  P  E  A  Y  A  Q  D  E  E  D  L  R  I  W  R  E  M  S  T  L  V  E  R  M  C  W  R  I  A  A  K  K  N  Q  T  V  I  W  Q  K  P  L  N  N  D  C  Y  M  E  R  P  P  G  T  Q  P  P  L  C  R  S  D  N  D  P  D  A  V  W  G  V  N  M  E  A  C  I  T  P  Y  S  E   : H  D  H  K  V  S  G  S  G  L  A  P  W  P  A  R  L  S  S  P  P  P  R  L  A  D  F  G  Y  S  N  E  M  F  E  K  D  T  :  D  T  W  R  E  R  V  D  H  Y  W  S  L  L  S  S  K  I  S  S  D  T  L  R  N  I  M  D  M  K  A  N  L  G  S  F  A  A  S  L  K  D  K  N  V  W  V  M  N  V  V  P  K  D  G  P  N  T  L  K  I  V  Y  D  R  G  L  I  G  T  T  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  L  H  A  W  T  V  F  S  D  A  E  K  K  G  C  S  G  E  D  L  L  L  E  I  D  R  I  L  R  P  T  G  F  V  I  I  R  D  K  Q  H  I  I  E  F  I  K  K  H  L  S  A  L  H  W  E  A  V  A  S  T  D  S  T  S  D  P  E  Q  D  N  D  E  V  V  F  V  V  Q  K  K  L  W  L  T  S  G  S  I  R  D  T  E  *  I  A  E  F  V  T  H  F  A  N  S  F  S  L  *  A  F  R  V  L  K  K  K  K  M  Y  A  L  N  F  Q  F  E  F  V  F  A  C  Y  L  F  S  F  F  T  P  N  A  F  L  C  K  F  T  N  *  E  T  T  *  C  I  H  R  L  F  F  F  Y  N  *  R  I  L  I  F  D  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78453" stop="78274"/>
                    <exon start="78168" stop="77574"/>
                    <exon start="77443" stop="77331"/>
                    <exon start="77221" stop="77001"/>
                    <exon start="76714" stop="76393"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIKWPRSRDEVWKLNIPHTHLANEKSDQNWMVVKGEKIVFPGGGTHFHYGADKYIALIANMLNFTNNNLNDEGRIRTVFDVGCGVASFGGYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSTLVERMCWRIAAKKNQTVIWQKPLNNDCYMERPPGTQPPLCRSDNDPDAVWGVNMEACITPYSEHDHKVSGSGLAPWPARLSSPPPRLADFGYSNEMFEKDTDTWRERVDHYWSLLSSKISSDTLRNIMDMKANLGSFAASLKDKNVWVMNVVPKDGPNTLKIVYDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVFSDAEKKGCSGEDLLLEIDRILRPTGFVIIRDKQHIIEFIKKHLSALHWEAVASTDSTSDPEQDNDEVVFVVQKKLWLTSGSIRDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="80678" PGL_stop="78591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80678" e_stop="80514"/>
            <exon e_start="79319" e_stop="78887"/>
            <exon e_start="78730" e_stop="78591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.784" e_score="0.982"/>
          <exon-intron don_prob="0.942" acc_prob="0.992" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="80678" e_stop="80514" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.784">
            <gDNA_intron_boundary i_start="80513" i_stop="79320" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="79319" e_stop="78887" e_length="433"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78886" i_stop="78731" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78730" e_stop="78591" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80678" stop="80514"/>
              <exon start="79319" stop="78887"/>
              <exon start="78730" stop="78591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTCTCTCTGTCCCTCCATTTATTCTCTGCAGAAAAACACACACACACAGTCTCTCTCACGCTCTCTCATCATATTCATTCCCTTTTTGTAGTATTTTTCTCCACATTTACATCTCCAGGAACTCATTATTGGGTTTCCCTCTCATTATTCCTAATTCAGATCT : ATTGCTTCCTCAACATTGCAGATCAACTTTTCTCAAGAGTCTAATTGTTTAATCTCCTTAGTCAAGATACTTGATTTTAATTGGTGCCTTATCTAGACAATTATGATTTCAAAGAGCTGAAGTAGAAAAGAGAAAGTTAAGTTTTTCCACGGACACAAAAAAAACCCAAATGATGCGAGGGAGATCAGACGGAGCGCAAAAGAAGCGCTTGTGGACTTTTGTAGGTATTGGGACTGTCTTGGTTGTTTTCCTTTACATGTATTTTGGATCCAAGAGCGGTGGTGAGTCTGCTCTTGAGTATGGCAGCCGTTCTTTGAGGAAATTGGGATCGTCTTATTTGGGTGGGGATGATAACTCTGATCTCAGCAGCAGGCAAGAGGAGAAGTTTGGACTGGAAGATGGTGATGGTGGCATCGTCCCTAAGAGTTTTCCA : GTTTGTGATGATCGACATTCAGAATTAATTCCGTGTCTGGACAGACATCTCATTTATCAAATGAGATTAAAGTTGGATTTGTCACTGATGGAGCACTATGAAAGACATTGCCCCTTGCCAGAAAGACGTTATAATTGTCT</gDNA_template>
            <first_frame> H  S  L  C  P  S  I  Y  S  L  Q  K  N  T  H  T  Q  S  L  S  R  S  L  I  I  F  I  P  F  L  *  Y  F  S  P  H  L  H  L  Q  E  L  I  I  G  F  P  S  H  Y  S  *  F  R  S  :  I  A  S  S  T  L  Q  I  N  F  S  Q  E  S  N  C  L  I  S  L  V  K  I  L  D  F  N  W  C  L  I  *  T  I  M  I  S  K  S  *  S  R  K  E  K  V  K  F  F  H  G  H  K  K  N  P  N  D  A  R  E  I  R  R  S  A  K  E  A  L  V  D  F  C  R  Y  W  D  C  L  G  C  F  P  L  H  V  F  W  I  Q  E  R  W  *  V  C  S  *  V  W  Q  P  F  F  E  E  I  G  I  V  L  F  G  W  G  *  *  L  *  S  Q  Q  Q  A  R  G  E  V  W  T  G  R  W  *  W  W  H  R  P  *  E  F  S   : S  L  *  *  S  T  F  R  I  N  S  V  S  G  Q  T  S  H  L  S  N  E  I  K  V  G  F  V  T  D  G  A  L  *  K  T  L  P  L  A  R  K  T  L  *  L  S </first_frame>
            <second_frame>  T  L  S  V  P  P  F  I  L  C  R  K  T  H  T  H  S  L  S  H  A  L  S  S  Y  S  F  P  F  C  S  I  F  L  H  I  Y  I  S  R  N  S  L  L  G  F  P  L  I  I  P  N  S  D  L :   L  L  P  Q  H  C  R  S  T  F  L  K  S  L  I  V  *  S  P  *  S  R  Y  L  I  L  I  G  A  L  S  R  Q  L  *  F  Q  R  A  E  V  E  K  R  K  L  S  F  S  T  D  T  K  K  T  Q  M  M  R  G  R  S  D  G  A  Q  K  K  R  L  W  T  F  V  G  I  G  T  V  L  V  V  F  L  Y  M  Y  F  G  S  K  S  G  G  E  S  A  L  E  Y  G  S  R  S  L  R  K  L  G  S  S  Y  L  G  G  D  D  N  S  D  L  S  S  R  Q  E  E  K  F  G  L  E  D  G  D  G  G  I  V  P  K  S  F  P  :  V  C  D  D  R  H  S  E  L  I  P  C  L  D  R  H  L  I  Y  Q  M  R  L  K  L  D  L  S  L  M  E  H  Y  E  R  H  C  P  L  P  E  R  R  Y  N  C   </second_frame>
            <third_frame>   L  S  L  S  L  H  L  F  S  A  E  K  H  T  H  T  V  S  L  T  L  S  H  H  I  H  S  L  F  V  V  F  F  S  T  F  T  S  P  G  T  H  Y  W  V  S  L  S  L  F  L  I  Q  I   : Y  C  F  L  N  I  A  D  Q  L  F  S  R  V  *  L  F  N  L  L  S  Q  D  T  *  F  *  L  V  P  Y  L  D  N  Y  D  F  K  E  L  K  *  K  R  E  S  *  V  F  P  R  T  Q  K  K  P  K  *  C  E  G  D  Q  T  E  R  K  R  S  A  C  G  L  L  *  V  L  G  L  S  W  L  F  S  F  T  C  I  L  D  P  R  A  V  V  S  L  L  L  S  M  A  A  V  L  *  G  N  W  D  R  L  I  W  V  G  M  I  T  L  I  S  A  A  G  K  R  R  S  L  D  W  K  M  V  M  V  A  S  S  L  R  V  F  Q :   F  V  M  I  D  I  Q  N  *  F  R  V  W  T  D  I  S  F  I  K  *  D  *  S  W  I  C  H  *  W  S  T  M  K  D  I  A  P  C  Q  K  D  V  I  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79213" stop="78887"/>
                    <exon start="78730" stop="78593"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQRAEVEKRKLSFSTDTKKTQMMRGRSDGAQKKRLWTFVGIGTVLVVFLYMYFGSKSGGESALEYGSRSLRKLGSSYLGGDDNSDLSSRQEEKFGLEDGDGGIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSLMEHYERHCPLPERRYNC</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80677" stop="80514"/>
                    <exon start="79319" stop="79268"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSVPPFILCRKTHTHSLSHALSSYSFPFCSIFLHIYISRNSLLGFPLIIPNSDLLLPQHCRSTFLKSLIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="93472" PGL_stop="99054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93472" e_stop="93855"/>
            <exon e_start="94552" e_stop="94817"/>
            <exon e_start="95141" e_stop="95623"/>
            <exon e_start="95917" e_stop="96420"/>
            <exon e_start="96684" e_stop="96750"/>
            <exon e_start="98923" e_stop="98971"/>
            <exon e_start="99028" e_stop="99054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.995"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.826" e_score="0.672"/>
          <exon-intron don_prob="0.801" acc_prob="0.000" e_score="0.367"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="93472" e_stop="93855" e_length="384"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93856" i_stop="94551" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="94552" e_stop="94817" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94818" i_stop="95140" i_length="323"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="95141" e_stop="95623" e_length="483"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95624" i_stop="95916" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="95917" e_stop="96420" e_length="504"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96421" i_stop="96683" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="0.672">
            <gDNA_exon_boundary e_start="96684" e_stop="96750" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.826">
            <gDNA_intron_boundary i_start="96751" i_stop="98922" i_length="2172"/>
          </intron>
          <exon e_serial="6" e_score="0.367">
            <gDNA_exon_boundary e_start="98923" e_stop="98971" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.801" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98972" i_stop="99027" i_length="56"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="99028" e_stop="99054" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93472" stop="93855"/>
              <exon start="94552" stop="94817"/>
              <exon start="95141" stop="95623"/>
              <exon start="95917" stop="96420"/>
              <exon start="96684" stop="96750"/>
              <exon start="98923" stop="98971"/>
              <exon start="99028" stop="99054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAACAACAAAGAAGAGTAATTAAAATTATATAAAAAAAAATGGCTTCTAAGTCCTCTTTCCTATGTTTTTTCTTTTGTTTTCTTGTTGTTTGCCAGATCAGCTTCGCTCAAATTTTTGAGCGACAACAGATCTGGCAAAGGCTGCAGCATCAGCAGCAGCATCGGGCACTTAGGTCTAAAACCGAGTGCCAGATAGAGCGTTTGAACGCTCAAGAACCAAACCGTAGGTTTGAGTCCGAGGCGGGTGTTGTTGAGTTCTGGGATGCTACCCAAGAACAGTTTGAGTGCGCCGGAGTTCAGGCCGTTAGGCATGAAATCCGGCGCAACGGGCTTTTGTTGCCTTACTATAGCAACACTCCCCAACTCATCTATATTGTCCAAG : GAAGTGGAGTTCATTCAACAATATTCCCAGGCTGCGCCGAGACATTTGAAACAGAGTCGCCACTTGATCGTAGGGCACAGTCAGGAGATAGAGGGCAGAGATCACTCGATCGTCACCAGAAAGTTAGGCGTTTTCGGGCGGGAGATATTCTTGCATTGCCTGCTGGAGTTACTCATTGGACATACAATGATGGTGAAGAACCTATTATTAGTGTCTCACTTATTGACACTTCTAACGTTGCCAATCAACTTGACCTCACATTCAGG : AAATTCTTCCTAGCTGGAAATCCTCAACGTGGTGTACAACAACAAGTATTAGGAAGACAACAAGAGACAACTAGCCAATATGGAAGAAGAGGCTCAGAACAAGAGAAAGGAGGGAACATGTTAAGTGGATTCGATCCTCAAGTTCTCTCTGAGGCATTCAATGTAGACGTGGAGGTTATACGAAAGATCCAGGAGGAGGCCCCCGAGAGGGGTGTTATTGTCCTGGCTGAGAACCTTCGGTTCCTCCTCCCGGAGGAGAAAGAAGAAGAAGAAGAAGAAAGAGAATGGCATAGTAGAAGAGGATTCCCTCTTAATGGTTTGGAAGAAACTTTTTGCACAATGAAGTTGAGGGAGAACATTGGCCATCCTACTAGGTCTGACGTGTACAATCCACGTGGCGGACGTATAAGCACCGTCAATAGCAACAGTCTCCCTGTCCTTAACTGGCTCCAGCTCAGCGCTGAGAGAGGTACCCTCTACAAC : AATGCTATAGTGGCACCACATTGGAACTTGAACGCTCACTCAATCATCTATATCATCCGTGGAAGCGGTCGGTTCCAAGTGGTAGGGAACGCGGGAAAGTCCGTGTTTGATGATCAAGTGAGGCAGGGGCAACTTATCGTCGTGCCTCAAAACTTTGCTATAGTGAAGAAGGCAGGGGAGCAAGGGCTCGATTACATCGCTTTCAAGACCAATGACAACGCGATGATTAGTCCGTTAGCCGGACGTTTATCGGCTATCCGAGCCATGCCAGAGGAAGTCCTCATGAACTCATACCAAATTTCAAGGCAAGAGGCTAAGAGCTTGAAGTTTAATAGGGATGAACTTAGTGTTTTTGGACCAGGAGCTAGGTCTAGCAGGCAATATGCCTAAATGTAAAAAAACTCAAATAATGTAGTGTCTCAAAAATCCTATCCTTTATGTTAGGATTTGTTTGGTGAGAGAATAATAAAAAAATGCCTCTTGTAAAAGGCAATTTGGCGTTCA : ATATGTTAAAACTAAAAACAAAGAAGTTCAAATATCAAAATAAATAAAATAATAAAAGAATTTGGTG : ATATTGTATAATGCAAGCTCGTAGACCATAAAAAAGGGATGGAGAAAAT : AATTTATTTTGTGCTATTTAAAAAATA</gDNA_template>
            <first_frame> I  N  N  K  E  E  *  L  K  L  Y  K  K  K  W  L  L  S  P  L  S  Y  V  F  S  F  V  F  L  L  F  A  R  S  A  S  L  K  F  L  S  D  N  R  S  G  K  G  C  S  I  S  S  S  I  G  H  L  G  L  K  P  S  A  R  *  S  V  *  T  L  K  N  Q  T  V  G  L  S  P  R  R  V  L  L  S  S  G  M  L  P  K  N  S  L  S  A  P  E  F  R  P  L  G  M  K  S  G  A  T  G  F  C  C  L  T  I  A  T  L  P  N  S  S  I  L  S  K  :  E  V  E  F  I  Q  Q  Y  S  Q  A  A  P  R  H  L  K  Q  S  R  H  L  I  V  G  H  S  Q  E  I  E  G  R  D  H  S  I  V  T  R  K  L  G  V  F  G  R  E  I  F  L  H  C  L  L  E  L  L  I  G  H  T  M  M  V  K  N  L  L  L  V  S  H  L  L  T  L  L  T  L  P  I  N  L  T  S  H  S  G :   N  S  S  *  L  E  I  L  N  V  V  Y  N  N  K  Y  *  E  D  N  K  R  Q  L  A  N  M  E  E  E  A  Q  N  K  R  K  E  G  T  C  *  V  D  S  I  L  K  F  S  L  R  H  S  M  *  T  W  R  L  Y  E  R  S  R  R  R  P  P  R  G  V  L  L  S  W  L  R  T  F  G  S  S  S  R  R  R  K  K  K  K  K  K  K  E  N  G  I  V  E  E  D  S  L  L  M  V  W  K  K  L  F  A  Q  *  S  *  G  R  T  L  A  I  L  L  G  L  T  C  T  I  H  V  A  D  V  *  A  P  S  I  A  T  V  S  L  S  L  T  G  S  S  S  A  L  R  E  V  P  S  T  T :   M  L  *  W  H  H  I  G  T  *  T  L  T  Q  S  S  I  S  S  V  E  A  V  G  S  K  W  *  G  T  R  E  S  P  C  L  M  I  K  *  G  R  G  N  L  S  S  C  L  K  T  L  L  *  *  R  R  Q  G  S  K  G  S  I  T  S  L  S  R  P  M  T  T  R  *  L  V  R  *  P  D  V  Y  R  L  S  E  P  C  Q  R  K  S  S  *  T  H  T  K  F  Q  G  K  R  L  R  A  *  S  L  I  G  M  N  L  V  F  L  D  Q  E  L  G  L  A  G  N  M  P  K  C  K  K  T  Q  I  M  *  C  L  K  N  P  I  L  Y  V  R  I  C  L  V  R  E  *  *  K  N  A  S  C  K  R  Q  F  G  V  Q :   Y  V  K  T  K  N  K  E  V  Q  I  S  K  *  I  K  *  *  K  N  L  V  :  I  L  Y  N  A  S  S  *  T  I  K  K  G  W  R  K   : *  F  I  L  C  Y  L  K  N  </first_frame>
            <second_frame>  S  T  T  K  K  S  N  *  N  Y  I  K  K  N  G  F  *  V  L  F  P  M  F  F  L  L  F  S  C  C  L  P  D  Q  L  R  S  N  F  *  A  T  T  D  L  A  K  A  A  A  S  A  A  A  S  G  T  *  V  *  N  R  V  P  D  R  A  F  E  R  S  R  T  K  P  *  V  *  V  R  G  G  C  C  *  V  L  G  C  Y  P  R  T  V  *  V  R  R  S  S  G  R  *  A  *  N  P  A  Q  R  A  F  V  A  L  L  *  Q  H  S  P  T  H  L  Y  C  P  R :   K  W  S  S  F  N  N  I  P  R  L  R  R  D  I  *  N  R  V  A  T  *  S  *  G  T  V  R  R  *  R  A  E  I  T  R  S  S  P  E  S  *  A  F  S  G  G  R  Y  S  C  I  A  C  W  S  Y  S  L  D  I  Q  *  W  *  R  T  Y  Y  *  C  L  T  Y  *  H  F  *  R  C  Q  S  T  *  P  H  I  Q   : E  I  L  P  S  W  K  S  S  T  W  C  T  T  T  S  I  R  K  T  T  R  D  N  *  P  I  W  K  K  R  L  R  T  R  E  R  R  E  H  V  K  W  I  R  S  S  S  S  L  *  G  I  Q  C  R  R  G  G  Y  T  K  D  P  G  G  G  P  R  E  G  C  Y  C  P  G  *  E  P  S  V  P  P  P  G  G  E  R  R  R  R  R  R  K  R  M  A  *  *  K  R  I  P  S  *  W  F  G  R  N  F  L  H  N  E  V  E  G  E  H  W  P  S  Y  *  V  *  R  V  Q  S  T  W  R  T  Y  K  H  R  Q  *  Q  Q  S  P  C  P  *  L  A  P  A  Q  R  *  E  R  Y  P  L  Q   : Q  C  Y  S  G  T  T  L  E  L  E  R  S  L  N  H  L  Y  H  P  W  K  R  S  V  P  S  G  R  E  R  G  K  V  R  V  *  *  S  S  E  A  G  A  T  Y  R  R  A  S  K  L  C  Y  S  E  E  G  R  G  A  R  A  R  L  H  R  F  Q  D  Q  *  Q  R  D  D  *  S  V  S  R  T  F  I  G  Y  P  S  H  A  R  G  S  P  H  E  L  I  P  N  F  K  A  R  G  *  E  L  E  V  *  *  G  *  T  *  C  F  W  T  R  S  *  V  *  Q  A  I  C  L  N  V  K  K  L  K  *  C  S  V  S  K  I  L  S  F  M  L  G  F  V  W  *  E  N  N  K  K  M  P  L  V  K  G  N  L  A  F   : N  M  L  K  L  K  T  K  K  F  K  Y  Q  N  K  *  N  N  K  R  I  W  * :   Y  C  I  M  Q  A  R  R  P  *  K  R  D  G  E  N  :  N  L  F  C  A  I  *  K  I </second_frame>
            <third_frame>   Q  Q  Q  R  R  V  I  K  I  I  *  K  K  M  A  S  K  S  S  F  L  C  F  F  F  C  F  L  V  V  C  Q  I  S  F  A  Q  I  F  E  R  Q  Q  I  W  Q  R  L  Q  H  Q  Q  Q  H  R  A  L  R  S  K  T  E  C  Q  I  E  R  L  N  A  Q  E  P  N  R  R  F  E  S  E  A  G  V  V  E  F  W  D  A  T  Q  E  Q  F  E  C  A  G  V  Q  A  V  R  H  E  I  R  R  N  G  L  L  L  P  Y  Y  S  N  T  P  Q  L  I  Y  I  V  Q   : G  S  G  V  H  S  T  I  F  P  G  C  A  E  T  F  E  T  E  S  P  L  D  R  R  A  Q  S  G  D  R  G  Q  R  S  L  D  R  H  Q  K  V  R  R  F  R  A  G  D  I  L  A  L  P  A  G  V  T  H  W  T  Y  N  D  G  E  E  P  I  I  S  V  S  L  I  D  T  S  N  V  A  N  Q  L  D  L  T  F  R  :  K  F  F  L  A  G  N  P  Q  R  G  V  Q  Q  Q  V  L  G  R  Q  Q  E  T  T  S  Q  Y  G  R  R  G  S  E  Q  E  K  G  G  N  M  L  S  G  F  D  P  Q  V  L  S  E  A  F  N  V  D  V  E  V  I  R  K  I  Q  E  E  A  P  E  R  G  V  I  V  L  A  E  N  L  R  F  L  L  P  E  E  K  E  E  E  E  E  E  R  E  W  H  S  R  R  G  F  P  L  N  G  L  E  E  T  F  C  T  M  K  L  R  E  N  I  G  H  P  T  R  S  D  V  Y  N  P  R  G  G  R  I  S  T  V  N  S  N  S  L  P  V  L  N  W  L  Q  L  S  A  E  R  G  T  L  Y  N  :  N  A  I  V  A  P  H  W  N  L  N  A  H  S  I  I  Y  I  I  R  G  S  G  R  F  Q  V  V  G  N  A  G  K  S  V  F  D  D  Q  V  R  Q  G  Q  L  I  V  V  P  Q  N  F  A  I  V  K  K  A  G  E  Q  G  L  D  Y  I  A  F  K  T  N  D  N  A  M  I  S  P  L  A  G  R  L  S  A  I  R  A  M  P  E  E  V  L  M  N  S  Y  Q  I  S  R  Q  E  A  K  S  L  K  F  N  R  D  E  L  S  V  F  G  P  G  A  R  S  S  R  Q  Y  A  *  M  *  K  N  S  N  N  V  V  S  Q  K  S  Y  P  L  C  *  D  L  F  G  E  R  I  I  K  K  C  L  L  *  K  A  I  W  R  S  :  I  C  *  N  *  K  Q  R  S  S  N  I  K  I  N  K  I  I  K  E  F  G   : D  I  V  *  C  K  L  V  D  H  K  K  G  M  E  K  I :   I  Y  F  V  L  F  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93507" stop="93855"/>
                    <exon start="94552" stop="94817"/>
                    <exon start="95141" stop="95623"/>
                    <exon start="95917" stop="96306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMASKSSFLCFFFCFLVVCQISFAQIFERQQIWQRLQHQQQHRALRSKTECQIERLNAQEPNRRFESEAGVVEFWDATQEQFECAGVQAVRHEIRRNGLLLPYYSNTPQLIYIVQGSGVHSTIFPGCAETFETESPLDRRAQSGDRGQRSLDRHQKVRRFRAGDILALPAGVTHWTYNDGEEPIISVSLIDTSNVANQLDLTFRKFFLAGNPQRGVQQQVLGRQQETTSQYGRRGSEQEKGGNMLSGFDPQVLSEAFNVDVEVIRKIQEEAPERGVIVLAENLRFLLPEEKEEEEEEREWHSRRGFPLNGLEETFCTMKLRENIGHPTRSDVYNPRGGRISTVNSNSLPVLNWLQLSAERGTLYNNAIVAPHWNLNAHSIIYIIRGSGRFQVVGNAGKSVFDDQVRQGQLIVVPQNFAIVKKAGEQGLDYIAFKTNDNAMISPLAGRLSAIRAMPEEVLMNSYQISRQEAKSLKFNRDELSVFGPGARSSRQYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="98748" PGL_stop="96550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98748" e_stop="98473"/>
            <exon e_start="98009" e_stop="97880"/>
            <exon e_start="97336" e_stop="96550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.913"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="98748" e_stop="98473" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98472" i_stop="98010" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="98009" e_stop="97880" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97879" i_stop="97337" i_length="543"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="97336" e_stop="96550" e_length="787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98748" stop="98473"/>
              <exon start="98009" stop="97880"/>
              <exon start="97336" stop="96550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTCCACTGAAACTGAAGAGTGAGACTTCTAATAATTTCTCTCACACACAAAAATTTGGAGAAAAAAAAAAGATATAGAAAGAAGTTAAAGTTATTTTTTTTAGTCTGTTTAAAAAAAAACGATTGAGAAAAAAGAAAAATGGACAGAGCACCTTCTTGTGAGAAAACGAGCTTGAAGAAAGGGTCATGGGATCACGAAGAAGACCAAATTCTCATCTCTTACATTAACAAAAATGGCCATGGCAATTGGCGCGCACTCCCTAGACAAGCTG : GATTATTGAGATGTGGAAAAAGTTGCAGATTGAGGTGGATGAATTATTTGAGTCCACATATTAAGAGGGGAAATTTCACCAAAGAAGAAGAAGATAATATCATCAATTTACATGAAATTCTTGGAAATAG : ATGGTCAGCAATAGCAGCAAGATTACCGGGAAGAACGGATAATGAAATAAAAAATATTTGGCACACCCACTTGAAGAAAAGGCTAAAAAATTGTCAGTCTCCTCGAAGCTTCAAAAGACACAAAAAAATTAATCAAATAAATAATTGCATGCATGCTCCTAACTCACCAGAAATATCGTCTAGCGAGACGTCAATCATGACAACCAATTCATCATCAAGTGGTACTTTCGATACGACGATCGACGATCAAATAGTGATTAAACAAGAAGAAATGGACTCATCGGAGTATTTCGCCAAGATCGATGAGAGCTTCTGGACGGATGAATTAACGATAGAGAACAATTTCGACTTTGTTACTAATATGGATGGTGAAGAATTTGAAAGCTTAGACATGTTTAATAGTACAACAATAATGGAGGATGACATTGACATGGACTTTTTGTTCAACTTTTTCATAAAGACTGAGGAATTTTCAGAATTACCAGAACTTTGAGGGGTCAATTTTGGGTTTCATCATAAATTTGGAGTATGACAAGTTGGAAAATTTTTATGTGTTTTTTTCTTGACCATTAAATATGGGGAGGACCACCAAATTCTTTTATTATTTTATTTATTTTGATATTTGAACTTCTTTGTTTTTAGTTTTAACATATAGTATAAAGTTACCACTAATGAGTAGATAGTGGGAAATACATTATTGGCATGTGAAATAATGCTAATTATACAGATGGAGACATATTGAGGGACTTAATGTATGAAAAAAAAATTAAATCTATTGATCGGTCAT</gDNA_template>
            <first_frame> F  L  S  T  E  T  E  E  *  D  F  *  *  F  L  S  H  T  K  I  W  R  K  K  K  D  I  E  R  S  *  S  Y  F  F  *  S  V  *  K  K  T  I  E  K  K  E  K  W  T  E  H  L  L  V  R  K  R  A  *  R  K  G  H  G  I  T  K  K  T  K  F  S  S  L  T  L  T  K  M  A  M  A  I  G  A  H  S  L  D  K  L  :  D  Y  *  D  V  E  K  V  A  D  *  G  G  *  I  I  *  V  H  I  L  R  G  E  I  S  P  K  K  K  K  I  I  S  S  I  Y  M  K  F  L  E  I   : D  G  Q  Q  *  Q  Q  D  Y  R  E  E  R  I  M  K  *  K  I  F  G  T  P  T  *  R  K  G  *  K  I  V  S  L  L  E  A  S  K  D  T  K  K  L  I  K  *  I  I  A  C  M  L  L  T  H  Q  K  Y  R  L  A  R  R  Q  S  *  Q  P  I  H  H  Q  V  V  L  S  I  R  R  S  T  I  K  *  *  L  N  K  K  K  W  T  H  R  S  I  S  P  R  S  M  R  A  S  G  R  M  N  *  R  *  R  T  I  S  T  L  L  L  I  W  M  V  K  N  L  K  A  *  T  C  L  I  V  Q  Q  *  W  R  M  T  L  T  W  T  F  C  S  T  F  S  *  R  L  R  N  F  Q  N  Y  Q  N  F  E  G  S  I  L  G  F  I  I  N  L  E  Y  D  K  L  E  N  F  Y  V  F  F  S  *  P  L  N  M  G  R  T  T  K  F  F  Y  Y  F  I  Y  F  D  I  *  T  S  L  F  L  V  L  T  Y  S  I  K  L  P  L  M  S  R  *  W  E  I  H  Y  W  H  V  K  *  C  *  L  Y  R  W  R  H  I  E  G  L  N  V  *  K  K  N  *  I  Y  *  S  V   </first_frame>
            <second_frame>  F  F  P  L  K  L  K  S  E  T  S  N  N  F  S  H  T  Q  K  F  G  E  K  K  K  I  *  K  E  V  K  V  I  F  F  S  L  F  K  K  K  R  L  R  K  K  K  N  G  Q  S  T  F  L  *  E  N  E  L  E  E  R  V  M  G  S  R  R  R  P  N  S  H  L  L  H  *  Q  K  W  P  W  Q  L  A  R  T  P  *  T  S  W :   I  I  E  M  W  K  K  L  Q  I  E  V  D  E  L  F  E  S  T  Y  *  E  G  K  F  H  Q  R  R  R  R  *  Y  H  Q  F  T  *  N  S  W  K  *  :  M  V  S  N  S  S  K  I  T  G  K  N  G  *  *  N  K  K  Y  L  A  H  P  L  E  E  K  A  K  K  L  S  V  S  S  K  L  Q  K  T  Q  K  N  *  S  N  K  *  L  H  A  C  S  *  L  T  R  N  I  V  *  R  D  V  N  H  D  N  Q  F  I  I  K  W  Y  F  R  Y  D  D  R  R  S  N  S  D  *  T  R  R  N  G  L  I  G  V  F  R  Q  D  R  *  E  L  L  D  G  *  I  N  D  R  E  Q  F  R  L  C  Y  *  Y  G  W  *  R  I  *  K  L  R  H  V  *  *  Y  N  N  N  G  G  *  H  *  H  G  L  F  V  Q  L  F  H  K  D  *  G  I  F  R  I  T  R  T  L  R  G  Q  F  W  V  S  S  *  I  W  S  M  T  S  W  K  I  F  M  C  F  F  L  D  H  *  I  W  G  G  P  P  N  S  F  I  I  L  F  I  L  I  F  E  L  L  C  F  *  F  *  H  I  V  *  S  Y  H  *  *  V  D  S  G  K  Y  I  I  G  M  *  N  N  A  N  Y  T  D  G  D  I  L  R  D  L  M  Y  E  K  K  I  K  S  I  D  R  S  </second_frame>
            <third_frame>   S  F  H  *  N  *  R  V  R  L  L  I  I  S  L  T  H  K  N  L  E  K  K  K  R  Y  R  K  K  L  K  L  F  F  L  V  C  L  K  K  N  D  *  E  K  R  K  M  D  R  A  P  S  C  E  K  T  S  L  K  K  G  S  W  D  H  E  E  D  Q  I  L  I  S  Y  I  N  K  N  G  H  G  N  W  R  A  L  P  R  Q  A   : G  L  L  R  C  G  K  S  C  R  L  R  W  M  N  Y  L  S  P  H  I  K  R  G  N  F  T  K  E  E  E  D  N  I  I  N  L  H  E  I  L  G  N  R :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  I  W  H  T  H  L  K  K  R  L  K  N  C  Q  S  P  R  S  F  K  R  H  K  K  I  N  Q  I  N  N  C  M  H  A  P  N  S  P  E  I  S  S  S  E  T  S  I  M  T  T  N  S  S  S  S  G  T  F  D  T  T  I  D  D  Q  I  V  I  K  Q  E  E  M  D  S  S  E  Y  F  A  K  I  D  E  S  F  W  T  D  E  L  T  I  E  N  N  F  D  F  V  T  N  M  D  G  E  E  F  E  S  L  D  M  F  N  S  T  T  I  M  E  D  D  I  D  M  D  F  L  F  N  F  F  I  K  T  E  E  F  S  E  L  P  E  L  *  G  V  N  F  G  F  H  H  K  F  G  V  *  Q  V  G  K  F  L  C  V  F  F  L  T  I  K  Y  G  E  D  H  Q  I  L  L  L  F  Y  L  F  *  Y  L  N  F  F  V  F  S  F  N  I  *  Y  K  V  T  T  N  E  *  I  V  G  N  T  L  L  A  C  E  I  M  L  I  I  Q  M  E  T  Y  *  G  T  *  C  M  K  K  K  L  N  L  L  I  G  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98617" stop="98473"/>
                    <exon start="98009" stop="97880"/>
                    <exon start="97336" stop="96844"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRKMDRAPSCEKTSLKKGSWDHEEDQILISYINKNGHGNWRALPRQAGLLRCGKSCRLRWMNYLSPHIKRGNFTKEEEDNIINLHEILGNRWSAIAARLPGRTDNEIKNIWHTHLKKRLKNCQSPRSFKRHKKINQINNCMHAPNSPEISSSETSIMTTNSSSSGTFDTTIDDQIVIKQEEMDSSEYFAKIDESFWTDELTIENNFDFVTNMDGEEFESLDMFNSTTIMEDDIDMDFLFNFFIKTEEFSELPEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="116865" PGL_stop="118689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116865" e_stop="118689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="116865" e_stop="118689" e_length="1825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116865" stop="118689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGTGCACAATTTTTTGAACCAATTTTAGGCATTATGGCTGTGGGGGATAATGATAATAATAATTTACAAGTGCTTAATGCACTTGATTTGGCTAAAACTCAACTTTACCATTTTACAGCTATTGTTATTGCTGGAATGGGATTTTTTACTGATGCTTATGATCTGTTTAGTATTTCTCTTGTCACTAAATTGCTTGGGCGTTTATACTATACCAAACCGGATCTTTTGAAACCCGGAACACTCCCTCCGGCCGTATCAGCCTCGGTCACGGGTGTTGCCCTTGTTGGCACCCTAGCCGGCCAGCTATTCTTTGGCTGGCTAGGTGACAAAATGGGACGAAAAAAGGTGTATGGTATGACTTTAGTTCTCATGGTTGTGTGTTCTGTTGCTTCAGGGCTCTCCTTTGGTAGTACACCTAAGGGTGTTATGACTACATTGTGTTTTTTTAGGTTTTGGCTTGGATTTGGTATTGGTGGTGATTACCCTTTGTCCGCTACCATCATGTCTGAATACGCTAACAAAAAGACACGTGGTGCATTCATAGCGGCGGTATTCGCTATGCAAGGTTTTGGAATTTTGTTTAGTGGGATAGTTGCACTTATCACAGCAGCTGGATTCGATCACGCGTATAGATCCCCAACTTTCGAGGAAAATGCTGCTCTATCTACTGTACCACAATCGGACTACATTTGGCGTATCATTCTCATGTTTGGATCATTGCCAGCTGCCCTCACTTACTACTGGCGCATGAAAATGCCCGAAACAGCACGTTACACGGCTCTAGTCGCGAAAGACGCGAAGAGAGCCGCGCAGGACATGGGTAAGGTACTACAGGTGGAAATTGAAAGCGAGGAAGCCAAAATCGAACAAATTTCAAGGAATGAAACTAATCAATTCGGTCTGTTTTCGTGGGAATTTGTTCGACGGCACGGATTGCATTTATTCGGAACGTGTTCCACGTGGTTTTTATTAGATATTGCTTTCTACAGTCAGAATTTGTTTCAGAAGGATGTGTTCTCCGCCGTCGGATGGATCCCTAAAGCTCCAACAATGAACGCTGTTCAGGAAGTTTACAAAATTGCGAGAGCGCAAACATTAATTGCGCTCTGTAGCACGGTGCCAGGGTACTGGTTCACCGTGGCGTTTATTGACATTATTGGAAGGTTCGCTATCCAATTGATGGGATTCTTCTTCATGACAGTGTTTATGTTTGCGATTGCCATCCCTTACCATCATTGGACACTGGAGGCTAACCGCATTGGATTCATTGTAATGTATTCGCTTACATTTTTCTTTGCGAATTTTGGGCCTAACGCTACTACATTTGTGGTCCCGGCGGAGATTTTCCCAGCGAGGCTTCGATCAACATGTCATGGAATTTCAGCGGCTGCAGGTAAGGCTGGAGCTATAGTGGGAGCGTATGGGTTCTTATACGCTGCACAAAGTAAAGATCCAAACAAAACAGATGCAGGATACCCAGCGGGAATTGGAATAAAAAACTCGCTAATTGTTCTAGGCTGTATCAATGCACTTGGAATGTTATGTACATTTTGTGTGCCAGAGCCAAAAGGAAAATCTCTAGAGGAAGCATCACAAGAAACTATAACTGGAGAAGCATGAGATCATTAAATGATTGGAAAATCACTTTTTTTTTTAATGTTTTTGTTGGTTTAATTTCAGTTTTCTTTGTATTGTGTAAGCTTGTTTGTTGCAAGTTTTTATTGTATTATTTTTTTGTGGCCAAGTGTGTTATTGTAAAATGGTTTTGCTATTTATTTATATTATAAATAAAAAAATTGTTTGTAAATTGTGTGATATGAC</gDNA_template>
            <first_frame> R  K  C  T  I  F  *  T  N  F  R  H  Y  G  C  G  G  *  *  *  *  *  F  T  S  A  *  C  T  *  F  G  *  N  S  T  L  P  F  Y  S  Y  C  Y  C  W  N  G  I  F  Y  *  C  L  *  S  V  *  Y  F  S  C  H  *  I  A  W  A  F  I  L  Y  Q  T  G  S  F  E  T  R  N  T  P  S  G  R  I  S  L  G  H  G  C  C  P  C  W  H  P  S  R  P  A  I  L  W  L  A  R  *  Q  N  G  T  K  K  G  V  W  Y  D  F  S  S  H  G  C  V  F  C  C  F  R  A  L  L  W  *  Y  T  *  G  C  Y  D  Y  I  V  F  F  *  V  L  A  W  I  W  Y  W  W  *  L  P  F  V  R  Y  H  H  V  *  I  R  *  Q  K  D  T  W  C  I  H  S  G  G  I  R  Y  A  R  F  W  N  F  V  *  W  D  S  C  T  Y  H  S  S  W  I  R  S  R  V  *  I  P  N  F  R  G  K  C  C  S  I  Y  C  T  T  I  G  L  H  L  A  Y  H  S  H  V  W  I  I  A  S  C  P  H  L  L  L  A  H  E  N  A  R  N  S  T  L  H  G  S  S  R  E  R  R  E  E  S  R  A  G  H  G  *  G  T  T  G  G  N  *  K  R  G  S  Q  N  R  T  N  F  K  E  *  N  *  S  I  R  S  V  F  V  G  I  C  S  T  A  R  I  A  F  I  R  N  V  F  H  V  V  F  I  R  Y  C  F  L  Q  S  E  F  V  S  E  G  C  V  L  R  R  R  M  D  P  *  S  S  N  N  E  R  C  S  G  S  L  Q  N  C  E  S  A  N  I  N  C  A  L  *  H  G  A  R  V  L  V  H  R  G  V  Y  *  H  Y  W  K  V  R  Y  P  I  D  G  I  L  L  H  D  S  V  Y  V  C  D  C  H  P  L  P  S  L  D  T  G  G  *  P  H  W  I  H  C  N  V  F  A  Y  I  F  L  C  E  F  W  A  *  R  Y  Y  I  C  G  P  G  G  D  F  P  S  E  A  S  I  N  M  S  W  N  F  S  G  C  R  *  G  W  S  Y  S  G  S  V  W  V  L  I  R  C  T  K  *  R  S  K  Q  N  R  C  R  I  P  S  G  N  W  N  K  K  L  A  N  C  S  R  L  Y  Q  C  T  W  N  V  M  Y  I  L  C  A  R  A  K  R  K  I  S  R  G  S  I  T  R  N  Y  N  W  R  S  M  R  S  L  N  D  W  K  I  T  F  F  F  N  V  F  V  G  L  I  S  V  F  F  V  L  C  K  L  V  C  C  K  F  L  L  Y  Y  F  F  V  A  K  C  V  I  V  K  W  F  C  Y  L  F  I  L  *  I  K  K  L  F  V  N  C  V  I  *  </first_frame>
            <second_frame>  E  S  A  Q  F  F  E  P  I  L  G  I  M  A  V  G  D  N  D  N  N  N  L  Q  V  L  N  A  L  D  L  A  K  T  Q  L  Y  H  F  T  A  I  V  I  A  G  M  G  F  F  T  D  A  Y  D  L  F  S  I  S  L  V  T  K  L  L  G  R  L  Y  Y  T  K  P  D  L  L  K  P  G  T  L  P  P  A  V  S  A  S  V  T  G  V  A  L  V  G  T  L  A  G  Q  L  F  F  G  W  L  G  D  K  M  G  R  K  K  V  Y  G  M  T  L  V  L  M  V  V  C  S  V  A  S  G  L  S  F  G  S  T  P  K  G  V  M  T  T  L  C  F  F  R  F  W  L  G  F  G  I  G  G  D  Y  P  L  S  A  T  I  M  S  E  Y  A  N  K  K  T  R  G  A  F  I  A  A  V  F  A  M  Q  G  F  G  I  L  F  S  G  I  V  A  L  I  T  A  A  G  F  D  H  A  Y  R  S  P  T  F  E  E  N  A  A  L  S  T  V  P  Q  S  D  Y  I  W  R  I  I  L  M  F  G  S  L  P  A  A  L  T  Y  Y  W  R  M  K  M  P  E  T  A  R  Y  T  A  L  V  A  K  D  A  K  R  A  A  Q  D  M  G  K  V  L  Q  V  E  I  E  S  E  E  A  K  I  E  Q  I  S  R  N  E  T  N  Q  F  G  L  F  S  W  E  F  V  R  R  H  G  L  H  L  F  G  T  C  S  T  W  F  L  L  D  I  A  F  Y  S  Q  N  L  F  Q  K  D  V  F  S  A  V  G  W  I  P  K  A  P  T  M  N  A  V  Q  E  V  Y  K  I  A  R  A  Q  T  L  I  A  L  C  S  T  V  P  G  Y  W  F  T  V  A  F  I  D  I  I  G  R  F  A  I  Q  L  M  G  F  F  F  M  T  V  F  M  F  A  I  A  I  P  Y  H  H  W  T  L  E  A  N  R  I  G  F  I  V  M  Y  S  L  T  F  F  F  A  N  F  G  P  N  A  T  T  F  V  V  P  A  E  I  F  P  A  R  L  R  S  T  C  H  G  I  S  A  A  A  G  K  A  G  A  I  V  G  A  Y  G  F  L  Y  A  A  Q  S  K  D  P  N  K  T  D  A  G  Y  P  A  G  I  G  I  K  N  S  L  I  V  L  G  C  I  N  A  L  G  M  L  C  T  F  C  V  P  E  P  K  G  K  S  L  E  E  A  S  Q  E  T  I  T  G  E  A  *  D  H  *  M  I  G  K  S  L  F  F  L  M  F  L  L  V  *  F  Q  F  S  L  Y  C  V  S  L  F  V  A  S  F  Y  C  I  I  F  L  W  P  S  V  L  L  *  N  G  F  A  I  Y  L  Y  Y  K  *  K  N  C  L  *  I  V  *  Y  D </second_frame>
            <third_frame>   K  V  H  N  F  L  N  Q  F  *  A  L  W  L  W  G  I  M  I  I  I  I  Y  K  C  L  M  H  L  I  W  L  K  L  N  F  T  I  L  Q  L  L  L  L  L  E  W  D  F  L  L  M  L  M  I  C  L  V  F  L  L  S  L  N  C  L  G  V  Y  T  I  P  N  R  I  F  *  N  P  E  H  S  L  R  P  Y  Q  P  R  S  R  V  L  P  L  L  A  P  *  P  A  S  Y  S  L  A  G  *  V  T  K  W  D  E  K  R  C  M  V  *  L  *  F  S  W  L  C  V  L  L  L  Q  G  S  P  L  V  V  H  L  R  V  L  *  L  H  C  V  F  L  G  F  G  L  D  L  V  L  V  V  I  T  L  C  P  L  P  S  C  L  N  T  L  T  K  R  H  V  V  H  S  *  R  R  Y  S  L  C  K  V  L  E  F  C  L  V  G  *  L  H  L  S  Q  Q  L  D  S  I  T  R  I  D  P  Q  L  S  R  K  M  L  L  Y  L  L  Y  H  N  R  T  T  F  G  V  S  F  S  C  L  D  H  C  Q  L  P  S  L  T  T  G  A  *  K  C  P  K  Q  H  V  T  R  L  *  S  R  K  T  R  R  E  P  R  R  T  W  V  R  Y  Y  R  W  K  L  K  A  R  K  P  K  S  N  K  F  Q  G  M  K  L  I  N  S  V  C  F  R  G  N  L  F  D  G  T  D  C  I  Y  S  E  R  V  P  R  G  F  Y  *  I  L  L  S  T  V  R  I  C  F  R  R  M  C  S  P  P  S  D  G  S  L  K  L  Q  Q  *  T  L  F  R  K  F  T  K  L  R  E  R  K  H  *  L  R  S  V  A  R  C  Q  G  T  G  S  P  W  R  L  L  T  L  L  E  G  S  L  S  N  *  W  D  S  S  S  *  Q  C  L  C  L  R  L  P  S  L  T  I  I  G  H  W  R  L  T  A  L  D  S  L  *  C  I  R  L  H  F  S  L  R  I  L  G  L  T  L  L  H  L  W  S  R  R  R  F  S  Q  R  G  F  D  Q  H  V  M  E  F  Q  R  L  Q  V  R  L  E  L  *  W  E  R  M  G  S  Y  T  L  H  K  V  K  I  Q  T  K  Q  M  Q  D  T  Q  R  E  L  E  *  K  T  R  *  L  F  *  A  V  S  M  H  L  E  C  Y  V  H  F  V  C  Q  S  Q  K  E  N  L  *  R  K  H  H  K  K  L  *  L  E  K  H  E  I  I  K  *  L  E  N  H  F  F  F  *  C  F  C  W  F  N  F  S  F  L  C  I  V  *  A  C  L  L  Q  V  F  I  V  L  F  F  C  G  Q  V  C  Y  C  K  M  V  L  L  F  I  Y  I  I  N  K  K  I  V  C  K  L  C  D  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0207A03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116866" stop="118488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1620</number_coding_nucleotides>
                  <number_encoded_amino_acids>540</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESAQFFEPILGIMAVGDNDNNNLQVLNALDLAKTQLYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRLYYTKPDLLKPGTLPPAVSASVTGVALVGTLAGQLFFGWLGDKMGRKKVYGMTLVLMVVCSVASGLSFGSTPKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILFSGIVALITAAGFDHAYRSPTFEENAALSTVPQSDYIWRIILMFGSLPAALTYYWRMKMPETARYTALVAKDAKRAAQDMGKVLQVEIESEEAKIEQISRNETNQFGLFSWEFVRRHGLHLFGTCSTWFLLDIAFYSQNLFQKDVFSAVGWIPKAPTMNAVQEVYKIARAQTLIALCSTVPGYWFTVAFIDIIGRFAIQLMGFFFMTVFMFAIAIPYHHWTLEANRIGFIVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAYGFLYAAQSKDPNKTDAGYPAGIGIKNSLIVLGCINALGMLCTFCVPEPKGKSLEEASQETITGEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 327424 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 12593 bytes was the average size of a spliced alignment
$ 31464 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1430 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-06 20:43:13
-->
