<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 04:44:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0219H08-JtuTU/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ii6KmN/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ii6KmN/sgn_marker_seqs" ref_id="SGN-M3072" ref_strand="+" ref_description="SGN-M3072 cLET-5-D13 [est_clones]">
      <seq>aactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-JtuTU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2113" stop="3126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2413" g_stop="2826" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-M3072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2413" e_stop="2826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGA</genome_strand>
        <mrna_strand>AACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ii6KmN/sgn_marker_seqs" ref_id="SGN-M7064" ref_strand="+" ref_description="SGN-M7064 C2_At1g76080 [cosii_markers]">
      <seq>tcaatccaatagtgtcacaacctcatatcaaactacatttccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaaagattgtcatgataattgattttgaatgagaatgttattagccttgatttagttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-JtuTU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27181" stop="29838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27481" g_stop="28025" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29537" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="1215" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1235"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-M7064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27481" e_stop="28025"/>
          <exon e_start="28868" e_stop="29537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</genome_strand>
        <mrna_strand>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ii6KmN/sgn_marker_seqs" ref_id="SGN-M7064-2" ref_strand="+" ref_description="SGN-M7064-2 C2_At1g76080-2 [cosii_markers]">
      <seq>atttccccctttcttctaaacttgacatccctctttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactctgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaagttaatagtcctcgatgttggattgaagcattgtggaccatgtgtgaaagtttatccaacggtgatcaagctatcgaagcagatggctgatacagtcgtgttcgcgagaatgaatggcgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacatttttgtttataaagagatggtgagatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagataccaaggagttagggttacttattaaaattgttgaagttatattacaggacatttgatttgtgttaaatgattatgaactagttaagtggaaaaaaccaagttggcttggttgagattttaagttttggtatgtttagtttgtgaactatgttgtaagtgattaagattgtcatgataattgattttgaatgagaactatgttgtaagtgatgactcaactagattagttgaggtcttgtgatgttctagttgagtcatgtgatgacgttatgttgcaatattaaattaggcgcttaacgaagaaattcttatataacaaggagttaaggttacttactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-JtuTU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27223" stop="29821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27523" g_stop="28025" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29514" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="1137" r_length="634" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29515" i_stop="29627" i_length="113">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29628" g_stop="29738" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1138" r_stop="1244" r_length="107" r_score="0.694"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1280" polyA_stop="1294"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-M7064-2" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>1261</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7064-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27523" e_stop="28025"/>
          <exon e_start="28868" e_stop="29514"/>
          <exon e_start="29628" e_stop="29738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTAT-AAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGA-TTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGAATCATTTAGCTTGAAATGATCTTAATTAAAGCGCGCGAAAAATCTTTAACTTAAAAAAATGTGAAGGATGGGAAGAGAGTGAAATATTATTGAGTTGGTGAGTTCTATCATTACATGACTCAACTAGAGCTCCTTCTTATGTTCTAGTCGAGTCATGTGATGATATTATATCGCAATAGGTAGTTAGGTGCTTATCGAACA</genome_strand>
        <mrna_strand>ATTTCCCCCTTTCTTCTAAACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAGTTAATAGTCCTCGATGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACGGTGATCAAGCTATCGAAGCAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGCGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACATTTTTGTTTATAAAGAGATGGTGAGATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATACCAAGGAGTTAGGGTTACTTATTAAAATTGTTGAAGT--TA-TAT-TAC---A---GGACATTTGA-TTTGTGTTAAATGATTATGAACTAGTTAAGT--GGAAAAAACCAAGTTGGCTTGGTTGAGATTTTAAGTTTTGGTATGTTTAGTTTGT-GAACTATGTTGTAAGTGAT-TAAGATTGTCATGATAATTGATTTTGAATGAGAAC.................................................................................................................TATGTT-GTAAGTGATGACTCAACTAGA-T-TAGTTGAGGT-CTTGTGATGTTCTAGTTGAGTCATGTGATGACGTTATGTTGCAATATTAAATTAGGCGCTTAACGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ii6KmN/sgn_marker_seqs" ref_id="SGN-M8931" ref_strand="+" ref_description="SGN-M8931 C2_At5g42200 [cosii_markers]">
      <seq>gaaaaaagaaatcgaaattctaggaactgtacttgattcaaaattaagctatttctcataacaacatccaccaccccagattcagaattaaacgaagaaaaaaaaaattcaacaccaatcatatcaaactactcctataatctatcgaacattaataaaaataaagtttgaaataattgtaattaggaatatcttcaacatgggttactttcaggtggattgaagaactccggctccagtttagttctacaaactggacaaatcggattttttgaaagccaagtatcagcacattcaaggtgaaatccatggttacaacccggaacaactcgagcaatttgctcattctcaatttcatccaaacacaccgcacaatcgttacccattaacaattcattccctgtaattttcggtagtttgtccaattgagcagcagaaagacccaattcctgattcgttttctgactatggtaattttcagcgccggggccggcagattggtaagcagcggcgtaccagagtaaacagatgtagactaagaaaacagcgctcattccaacacagggaagaaacagagcgagaaaaacagagacaagcattgtttaattttgaaaaatgaccaaaaataaatttatgtttcacggcgggtggcggaggtggtggcgccggagaagaagagaaataattaaaaaattgagtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-JtuTU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="73726" stop="75028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74026" g_stop="74728" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-M8931" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74026" e_stop="74728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAGGGAAGAAACAGAGCGAGAAAAACAGAGACAAGCATTGTTTAATTTTGAAAAATGACCAAAAATAAATTTATGTTTCACGGCGGGTGGCGGAGGTGGTGGCGCCGGAGAAGAAGAGAAAGAATTAAAAAATTGAGTAATT</genome_strand>
        <mrna_strand>GAAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAGGGAAGAAACAGAGCGAGAAAAACAGAGACAAGCATTGTTTAATTTTGAAAAATGACCAAAAATAAATTTATGTTTCACGGCGGGTGGCGGAGGTGGTGGCGCCGGAGAAGAAGAGAAATAATTAAAAAATTGAGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ii6KmN/sgn_marker_seqs" ref_id="SGN-M8931-2" ref_strand="+" ref_description="SGN-M8931-2 C2_At5g42200-2 [cosii_markers]">
      <seq>gtgtgccaattactcaattctttaattctttctcttcatctccggcgccaccacctccgccacccgccgtaaaatatatatttttagtcagttttcaaaattaaacaatgcttgtctctgtttttctcgctctgtttcttccttgtgttggaatgagcgctgttttcttagtctacatctgtttactctggtacgctgctgcttaccagtctgccggccctggcgctgaaaattaccataatgaaaagacgaatcaggaattgggtctttctgctgctcaattggacaaactaccgaaaattactgggaacgaattggtaatgggtaatgattgtgcggtgtgtttggatgaaattgagaacgagcaaattgctcgagttgttccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctttcgaaaaatccgatttgtccggtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaagaaattcataattaaaattatttcaactttatttttattaatgcttgatagattataggagtagtttgatataattggtgttgaatcgtattaatatttttttttccgtttaattctgaatctgggtggtggatgttgttatgagaaatagcttaattgaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-JtuTU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75035" stop="73767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74735" g_stop="74058" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-M8931-2" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8931-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74735" e_stop="74058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAAT--T-TT----TTTTTTCTT-CGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAA</genome_strand>
        <mrna_strand>GTGTGCCAATTACTCAATTCTTTAATTCTTTCTCTTCATCTCCGGCGCCACCACCTCCGCCACCCGCCGT-AAA-AT--ATATATTTTTAGTCAGTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCTTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCTGCTGCTTACCAGTCTGCCGGCCCTGGCGCTGAAAATTACCATAATGAAAAGACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACTGGGAACGAATTGGTAATGGGTAATGATTGTGCGGTGTGTTTGGATGAAATTGAGAACGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCGAAAAATCCGATTTGTCCGGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGAAATTCATAATTAAAATTATTTC-AACTTTATTTTTATTAATGCTTGATAGATTATAGGAGTAGTTTGATATAATTGGTGTTGAATCGTATTAATATTTTTTTTTCCGTTTAATTCTGAATCT-GGGTGGTGGATGTTGTTATGAGAAATAGCTTAA--TTGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2413" PGL_stop="2826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2413" e_stop="2826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="2413" e_stop="2826" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2413" stop="2826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGA</gDNA_template>
            <first_frame> N  S  Y  S  P  F  L  D  S  K  F  S  I  T  K  A  T  T  R  S  I  L  I  N  N  G  H  C  Y  L  C  C  C  C  Y  S  I  F  H  W  P  *  G  W  C  F  I  I  F  Q  S  *  H  R  C  I  R  *  G  G  S  C  P  S  C  Q  I  D  C  E  G  V  F  E  R  C  R  C  C  G  C  C  H  R  C  *  R  D  A  C  *  Q  C  H  G  T  *  S  V  A  W  W  *  *  W  E  S  S  F  Y  S  W  E  L  Q  R  *  C  W  *  E  N  Y  I  Q  E  Q  C  R  V  P  T  Q  R  R  I  *  * </first_frame>
            <second_frame>  T  P  T  P  L  F  L  I  P  N  F  Q  S  Q  K  Q  Q  Q  E  A  Y  *  *  T  M  A  T  V  T  S  A  A  V  A  I  P  S  F  T  G  L  K  A  G  A  S  S  S  S  R  V  S  T  G  A  S  A  K  V  A  A  A  P  V  A  R  L  T  V  K  A  S  L  K  D  V  G  A  V  V  A  A  T  A  V  S  A  M  L  A  S  N  A  M  A  L  E  V  L  L  G  G  D  D  G  S  L  A  F  I  P  G  N  F  S  V  S  A  G  E  K  I  T  F  K  N  N  A  G  F  P  H  N  V  V  F  D   </second_frame>
            <third_frame>   L  L  L  P  F  S  *  F  Q  I  F  N  H  K  S  N  N  K  K  H  I  N  K  Q  W  P  L  L  P  L  L  L  L  L  F  H  L  S  L  A  L  R  L  V  L  H  H  L  P  E  L  A  P  V  H  P  L  R  W  Q  L  P  Q  L  P  D  *  L  *  R  R  L  *  K  M  S  V  L  W  L  L  P  P  L  L  A  R  C  L  L  A  M  P  W  H  L  K  C  C  L  V  V  M  M  G  V  *  L  L  F  L  G  T  S  A  L  V  L  V  R  K  L  H  S  R  T  M  Q  G  S  H  T  T  S  Y  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2483" stop="2824"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="27481" PGL_stop="29738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27481" e_stop="28025"/>
            <exon e_start="28868" e_stop="29537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27481" e_stop="28025" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28868" e_stop="29537" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27481" stop="28025"/>
              <exon start="28868" stop="29537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG : GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</gDNA_template>
            <first_frame> S  I  Q  *  C  H  N  L  I  S  N  Y  I  S  I  S  P  F  L  L  N  L  T  S  L  F  L  L  W  L  F  L  K  K  K  I  F  N  L  W  L  L  S  Q  I  F  C  S  N  P  L  Q  I  *  L  Q  L  Q  K  L  A  L  H  F  T  P  I  S  L  L  R  N  P  N  N  Q  F  S  R  T  S  K  Q  T  S  P  Y  *  L  Q  R  Q  Q  Q  H  L  M  L  R  K  K  W  L  K  V  K  E  Y  K  R  L  I  V  W  R  N  W  M  K  H  *  K  M  R  K  I  D  *  L  W  L  N  L  Q  A  K  I  V  N  V  R  K  I  F  I  L  L  W  *  I  *  V  R  H  V  T  M  S  I  S  C  W  *  S  E  M  K  R  R  R  L  R  H  S  A  G  E  K  R  L  T  R :   Y  H  I  S  T  S  T  K  A  W  R  R  S  T  R  K  K  A  L  A  R  T  N  L  P  V  M  Y  S  T  T  V  T  A  T  P  K  *  C  S  S  T  A  E  K  T  L  K  R  *  S  K  T  T  K  S  I  K  N  *  *  S  S  T  L  D  *  S  I  V  D  H  V  *  K  F  I  Q  Q  *  L  S  Y  R  N  R  W  L  I  Q  S  C  S  R  E  *  M  V  M  R  M  I  V  V  C  S  F  *  K  T  W  M  L  L  K  C  L  R  F  C  L  *  E  M  V  K  F  V  E  G  M  L  V  L  G  K  V  N  L  L  E  K  F  L  D  I  K  E  L  G  L  L  I  N  I  V  E  V  I  L  Y  T  *  L  G  H  L  I  L  C  *  M  I  M  D  *  L  S  G  E  K  T  K  L  T  W  L  R  F  K  F  W  Y  V  *  F  V  K  L  C  C  K  *  S  K  I  V  M  I  I  D  F  E  *  E  C  Y  *  P  *  F  S  * </first_frame>
            <second_frame>  Q  S  N  S  V  T  T  S  Y  Q  T  T  F  P  F  L  P  F  F  *  T  *  H  P  S  S  F  C  G  Y  S  *  K  K  K  S  L  I  Y  G  Y  S  H  K  F  F  A  Q  T  L  S  K  S  S  F  N  Y  K  N  *  P  F  T  L  L  Q  F  P  F  *  E  I  Q  T  I  N  F  Q  E  P  Q  N  K  Q  A  L  I  D  Y  K  G  N  S  S  T  *  C  *  E  K  S  G  *  K  *  K  S  T  K  G  *  *  Y  G  G  I  G  *  S  I  K  K  C  E  K  S  T  S  C  G  *  I  C  R  Q  R  *  *  T  F  E  K  Y  L  S  F  Y  G  E  F  K  *  D  M  *  R  C  R  F  L  V  G  D  R  R  *  N  G  E  D  *  G  T  L  P  E  R  K  D  *  Q   : G  T  T  F  Q  L  L  Q  K  H  G  E  D  P  R  G  R  R  H  W  P  G  P  T  C  R  *  C  T  L  L  R  *  Q  P  L  R  S  S  A  A  P  Q  Q  R  R  R  *  K  G  N  P  R  P  Q  N  R  *  K  I  N  S  P  R  R  W  I  E  A  L  W  T  M  C  E  S  L  S  N  S  D  *  A  I  E  T  D  G  *  Y  S  R  V  R  E  N  E  W  *  *  E  *  *  L  Y  A  V  F  E  R  H  G  C  Y  *  S  A  Y  V  F  V  Y  K  R  W  *  N  L  W  K  V  C  W  F  W  E  R  *  T  Y  W  R  N  S  *  I  S  R  S  *  G  Y  L  L  I  L  L  K  S  Y  Y  I  L  N  W  D  I  *  F  C  V  K  *  L  W  T  S  *  V  G  K  K  P  S  *  L  G  *  D  L  S  F  G  M  F  S  L  *  N  Y  V  V  S  D  Q  R  L  S  *  *  L  I  L  N  E  N  V  I  S  L  D  L  V   </second_frame>
            <third_frame>   N  P  I  V  S  Q  P  H  I  K  L  H  F  H  F  S  L  S  S  K  L  D  I  P  L  P  F  V  A  I  L  E  K  K  N  L  *  S  M  A  T  L  T  N  F  L  L  K  P  S  P  N  L  A  S  I  T  K  I  S  P  S  L  Y  S  N  F  P  F  E  K  S  K  Q  S  I  F  K  N  L  K  T  N  K  P  L  L  I  T  K  A  T  A  A  P  D  V  E  K  K  V  A  K  S  E  R  V  Q  K  V  N  S  M  E  E  L  D  E  A  L  K  N  A  K  N  R  L  V  V  V  E  F  A  G  K  D  S  E  R  S  K  N  I  Y  P  F  M  V  N  L  S  K  T  C  N  D  V  D  F  L  L  V  I  G  D  E  T  E  K  T  K  A  L  C  R  R  E  K  I  D  K  :  V  P  H  F  N  F  Y  K  S  M  E  K  I  H  E  E  E  G  I  G  P  D  Q  L  A  G  D  V  L  Y  Y  G  D  S  H  S  E  V  V  Q  L  H  S  R  E  D  V  E  K  V  I  Q  D  H  K  I  D  K  K  L  I  V  L  D  V  G  L  K  H  C  G  P  C  V  K  V  Y  P  T  V  I  K  L  S  K  Q  M  A  D  T  V  V  F  A  R  M  N  G  D  E  N  D  S  C  M  Q  F  L  K  D  M  D  V  I  E  V  P  T  F  L  F  I  R  D  G  E  I  C  G  R  Y  V  G  S  G  K  G  E  L  I  G  E  I  L  R  Y  Q  G  V  R  V  T  Y  *  Y  C  *  S  H  I  I  Y  L  I  G  T  F  D  F  V  L  N  D  Y  G  L  V  K  W  G  K  N  Q  V  D  L  V  E  I  *  V  L  V  C  L  V  C  K  T  M  L  *  V  I  K  D  C  H  D  N  *  F  *  M  R  M  L  L  A  L  I  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27594" stop="28025"/>
                    <exon start="28868" stop="29329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMATLTNFLLKPSPNLASITKISPSLYSNFPFEKSKQSIFKNLKTNKPLLITKATAAPDVEKKVAKSERVQKVNSMEELDEALKNAKNRLVVVEFAGKDSERSKNIYPFMVNLSKTCNDVDFLLVIGDETEKTKALCRREKIDKVPHFNFYKSMEKIHEEEGIGPDQLAGDVLYYGDSHSEVVQLHSREDVEKVIQDHKIDKKLIVLDVGLKHCGPCVKVYPTVIKLSKQMADTVVFARMNGDENDSCMQFLKDMDVIEVPTFLFIRDGEICGRYVGSGKGELIGEILRYQGVRVTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27523" e_stop="28025"/>
            <exon e_start="28868" e_stop="29514"/>
            <exon e_start="29628" e_stop="29738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.984"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.694"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="27523" e_stop="28025" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="28868" e_stop="29514" e_length="647"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29515" i_stop="29627" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.694">
            <gDNA_exon_boundary e_start="29628" e_stop="29738" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27523" stop="28025"/>
              <exon start="28868" stop="29514"/>
              <exon start="29628" stop="29738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7064-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG : GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAAT : TGAGTTGGTGAGTTCTATCATTACATGACTCAACTAGAGCTCCTTCTTATGTTCTAGTCGAGTCATGTGATGATATTATATCGCAATAGGTAGTTAGGTGCTTATCGAACA</gDNA_template>
            <first_frame> I  S  P  F  L  L  N  L  T  S  L  F  L  L  W  L  F  L  K  K  K  I  F  N  L  W  L  L  S  Q  I  F  C  S  N  P  L  Q  I  *  L  Q  L  Q  K  L  A  L  H  F  T  P  I  S  L  L  R  N  P  N  N  Q  F  S  R  T  S  K  Q  T  S  P  Y  *  L  Q  R  Q  Q  Q  H  L  M  L  R  K  K  W  L  K  V  K  E  Y  K  R  L  I  V  W  R  N  W  M  K  H  *  K  M  R  K  I  D  *  L  W  L  N  L  Q  A  K  I  V  N  V  R  K  I  F  I  L  L  W  *  I  *  V  R  H  V  T  M  S  I  S  C  W  *  S  E  M  K  R  R  R  L  R  H  S  A  G  E  K  R  L  T  R :   Y  H  I  S  T  S  T  K  A  W  R  R  S  T  R  K  K  A  L  A  R  T  N  L  P  V  M  Y  S  T  T  V  T  A  T  P  K  *  C  S  S  T  A  E  K  T  L  K  R  *  S  K  T  T  K  S  I  K  N  *  *  S  S  T  L  D  *  S  I  V  D  H  V  *  K  F  I  Q  Q  *  L  S  Y  R  N  R  W  L  I  Q  S  C  S  R  E  *  M  V  M  R  M  I  V  V  C  S  F  *  K  T  W  M  L  L  K  C  L  R  F  C  L  *  E  M  V  K  F  V  E  G  M  L  V  L  G  K  V  N  L  L  E  K  F  L  D  I  K  E  L  G  L  L  I  N  I  V  E  V  I  L  Y  T  *  L  G  H  L  I  L  C  *  M  I  M  D  *  L  S  G  E  K  T  K  L  T  W  L  R  F  K  F  W  Y  V  *  F  V  K  L  C  C  K  *  S  K  I  V  M  I  I  D  F  E  *  E   : L  S  W  *  V  L  S  L  H  D  S  T  R  A  P  S  Y  V  L  V  E  S  C  D  D  I  I  S  Q  *  V  V  R  C  L  S  N  </first_frame>
            <second_frame>  F  L  P  F  F  *  T  *  H  P  S  S  F  C  G  Y  S  *  K  K  K  S  L  I  Y  G  Y  S  H  K  F  F  A  Q  T  L  S  K  S  S  F  N  Y  K  N  *  P  F  T  L  L  Q  F  P  F  *  E  I  Q  T  I  N  F  Q  E  P  Q  N  K  Q  A  L  I  D  Y  K  G  N  S  S  T  *  C  *  E  K  S  G  *  K  *  K  S  T  K  G  *  *  Y  G  G  I  G  *  S  I  K  K  C  E  K  S  T  S  C  G  *  I  C  R  Q  R  *  *  T  F  E  K  Y  L  S  F  Y  G  E  F  K  *  D  M  *  R  C  R  F  L  V  G  D  R  R  *  N  G  E  D  *  G  T  L  P  E  R  K  D  *  Q   : G  T  T  F  Q  L  L  Q  K  H  G  E  D  P  R  G  R  R  H  W  P  G  P  T  C  R  *  C  T  L  L  R  *  Q  P  L  R  S  S  A  A  P  Q  Q  R  R  R  *  K  G  N  P  R  P  Q  N  R  *  K  I  N  S  P  R  R  W  I  E  A  L  W  T  M  C  E  S  L  S  N  S  D  *  A  I  E  T  D  G  *  Y  S  R  V  R  E  N  E  W  *  *  E  *  *  L  Y  A  V  F  E  R  H  G  C  Y  *  S  A  Y  V  F  V  Y  K  R  W  *  N  L  W  K  V  C  W  F  W  E  R  *  T  Y  W  R  N  S  *  I  S  R  S  *  G  Y  L  L  I  L  L  K  S  Y  Y  I  L  N  W  D  I  *  F  C  V  K  *  L  W  T  S  *  V  G  K  K  P  S  *  L  G  *  D  L  S  F  G  M  F  S  L  *  N  Y  V  V  S  D  Q  R  L  S  *  *  L  I  L  N  E  N  :  *  V  G  E  F  Y  H  Y  M  T  Q  L  E  L  L  L  M  F  *  S  S  H  V  M  I  L  Y  R  N  R  *  L  G  A  Y  R  T </second_frame>
            <third_frame>   F  S  L  S  S  K  L  D  I  P  L  P  F  V  A  I  L  E  K  K  N  L  *  S  M  A  T  L  T  N  F  L  L  K  P  S  P  N  L  A  S  I  T  K  I  S  P  S  L  Y  S  N  F  P  F  E  K  S  K  Q  S  I  F  K  N  L  K  T  N  K  P  L  L  I  T  K  A  T  A  A  P  D  V  E  K  K  V  A  K  S  E  R  V  Q  K  V  N  S  M  E  E  L  D  E  A  L  K  N  A  K  N  R  L  V  V  V  E  F  A  G  K  D  S  E  R  S  K  N  I  Y  P  F  M  V  N  L  S  K  T  C  N  D  V  D  F  L  L  V  I  G  D  E  T  E  K  T  K  A  L  C  R  R  E  K  I  D  K  :  V  P  H  F  N  F  Y  K  S  M  E  K  I  H  E  E  E  G  I  G  P  D  Q  L  A  G  D  V  L  Y  Y  G  D  S  H  S  E  V  V  Q  L  H  S  R  E  D  V  E  K  V  I  Q  D  H  K  I  D  K  K  L  I  V  L  D  V  G  L  K  H  C  G  P  C  V  K  V  Y  P  T  V  I  K  L  S  K  Q  M  A  D  T  V  V  F  A  R  M  N  G  D  E  N  D  S  C  M  Q  F  L  K  D  M  D  V  I  E  V  P  T  F  L  F  I  R  D  G  E  I  C  G  R  Y  V  G  S  G  K  G  E  L  I  G  E  I  L  R  Y  Q  G  V  R  V  T  Y  *  Y  C  *  S  H  I  I  Y  L  I  G  T  F  D  F  V  L  N  D  Y  G  L  V  K  W  G  K  N  Q  V  D  L  V  E  I  *  V  L  V  C  L  V  C  K  T  M  L  *  V  I  K  D  C  H  D  N  *  F  *  M  R  I :   E  L  V  S  S  I  I  T  *  L  N  *  S  S  F  L  C  S  S  R  V  M  *  *  Y  Y  I  A  I  G  S  *  V  L  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27594" stop="28025"/>
                    <exon start="28868" stop="29329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMATLTNFLLKPSPNLASITKISPSLYSNFPFEKSKQSIFKNLKTNKPLLITKATAAPDVEKKVAKSERVQKVNSMEELDEALKNAKNRLVVVEFAGKDSERSKNIYPFMVNLSKTCNDVDFLLVIGDETEKTKALCRREKIDKVPHFNFYKSMEKIHEEEGIGPDQLAGDVLYYGDSHSEVVQLHSREDVEKVIQDHKIDKKLIVLDVGLKHCGPCVKVYPTVIKLSKQMADTVVFARMNGDENDSCMQFLKDMDVIEVPTFLFIRDGEICGRYVGSGKGELIGEILRYQGVRVTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="74026" PGL_stop="74728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74026" e_stop="74728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="74026" e_stop="74728" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74026" stop="74728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAGGGAAGAAACAGAGCGAGAAAAACAGAGACAAGCATTGTTTAATTTTGAAAAATGACCAAAAATAAATTTATGTTTCACGGCGGGTGGCGGAGGTGGTGGCGCCGGAGAAGAAGAGAAAGAATTAAAAAATTGAGTAATT</gDNA_template>
            <first_frame> E  K  R  N  R  N  S  R  N  C  T  *  F  K  I  K  L  F  L  I  T  T  S  T  T  P  D  S  E  L  N  E  E  K  K  N  S  T  P  I  I  S  N  Y  S  Y  N  L  S  N  I  N  K  N  K  V  *  N  N  C  N  *  E  Y  L  Q  H  G  L  L  S  G  G  L  K  N  S  G  S  S  L  V  L  Q  T  G  Q  I  G  F  F  E  S  Q  V  S  A  H  S  R  *  N  P  W  L  Q  P  G  T  T  R  A  I  C  S  F  S  I  S  S  K  H  T  A  Q  S  L  P  I  N  N  S  F  P  V  I  F  G  S  L  S  N  *  A  A  E  R  P  N  S  *  F  V  F  *  L  W  *  F  S  A  P  G  P  A  D  W  *  A  A  A  Y  Q  S  K  Q  M  *  T  K  K  T  A  L  I  P  T  Q  G  R  N  R  A  R  K  T  E  T  S  I  V  *  F  *  K  M  T  K  N  K  F  M  F  H  G  G  W  R  R  W  W  R  R  R  R  R  E  R  I  K  K  L  S  N  </first_frame>
            <second_frame>  K  K  E  I  E  I  L  G  T  V  L  D  S  K  L  S  Y  F  S  *  Q  H  P  P  P  Q  I  Q  N  *  T  K  K  K  K  I  Q  H  Q  S  Y  Q  T  T  P  I  I  Y  R  T  L  I  K  I  K  F  E  I  I  V  I  R  N  I  F  N  M  G  Y  F  Q  V  D  *  R  T  P  A  P  V  *  F  Y  K  L  D  K  S  D  F  L  K  A  K  Y  Q  H  I  Q  G  E  I  H  G  Y  N  P  E  Q  L  E  Q  F  A  H  S  Q  F  H  P  N  T  P  H  N  R  Y  P  L  T  I  H  S  L  *  F  S  V  V  C  P  I  E  Q  Q  K  D  P  I  P  D  S  F  S  D  Y  G  N  F  Q  R  R  G  R  Q  I  G  K  Q  R  R  T  R  V  N  R  C  R  L  R  K  Q  R  S  F  Q  H  R  E  E  T  E  R  E  K  Q  R  Q  A  L  F  N  F  E  K  *  P  K  I  N  L  C  F  T  A  G  G  G  G  G  G  A  G  E  E  E  K  E  L  K  N  *  V  I </second_frame>
            <third_frame>   K  K  K  S  K  F  *  E  L  Y  L  I  Q  N  *  A  I  S  H  N  N  I  H  H  P  R  F  R  I  K  R  R  K  K  K  F  N  T  N  H  I  K  L  L  L  *  S  I  E  H  *  *  K  *  S  L  K  *  L  *  L  G  I  S  S  T  W  V  T  F  R  W  I  E  E  L  R  L  Q  F  S  S  T  N  W  T  N  R  I  F  *  K  P  S  I  S  T  F  K  V  K  S  M  V  T  T  R  N  N  S  S  N  L  L  I  L  N  F  I  Q  T  H  R  T  I  V  T  H  *  Q  F  I  P  C  N  F  R  *  F  V  Q  L  S  S  R  K  T  Q  F  L  I  R  F  L  T  M  V  I  F  S  A  G  A  G  R  L  V  S  S  G  V  P  E  *  T  D  V  D  *  E  N  S  A  H  S  N  T  G  K  K  Q  S  E  K  N  R  D  K  H  C  L  I  L  K  N  D  Q  K  *  I  Y  V  S  R  R  V  A  E  V  V  A  P  E  K  K  R  K  N  *  K  I  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74432" stop="74644"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSVVCPIEQQKDPIPDSFSDYGNFQRRGRQIGKQRRTRVNRCRLRKQRSFQHREETEREKQRQALFNFEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="74735" PGL_stop="74058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74735" e_stop="74058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="74735" e_stop="74058" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74735" stop="74058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8931-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAATTTTTTTTTTCTTCGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAA</gDNA_template>
            <first_frame> V  C  Q  L  L  N  F  L  I  L  S  L  L  L  R  R  H  H  L  R  H  P  P  *  N  I  N  L  F  L  V  I  F  Q  N  *  T  M  L  V  S  V  F  L  A  L  F  L  P  C  V  G  M  S  A  V  F  L  V  Y  I  C  L  L  W  Y  A  A  A  Y  Q  S  A  G  P  G  A  E  N  Y  H  S  Q  K  T  N  Q  E  L  G  L  S  A  A  Q  L  D  K  L  P  K  I  T  G  N  E  L  L  M  G  N  D  C  A  V  C  L  D  E  I  E  N  E  Q  I  A  R  V  V  P  G  C  N  H  G  F  H  L  E  C  A  D  T  W  L  S  K  N  P  I  C  P  V  C  R  T  K  L  E  P  E  F  F  N  P  P  E  S  N  P  C  *  R  Y  S  *  L  Q  L  F  Q  T  L  F  L  L  M  F  D  R  L  *  E  *  F  D  M  I  G  V  E  F  F  F  S  S  F  N  S  E  S  G  V  V  D  V  V  M  R  N  S  L  I  L  N  Q </first_frame>
            <second_frame>  C  A  N  Y  S  I  F  *  F  F  L  F  F  S  G  A  T  T  S  A  T  R  R  E  T  *  I  Y  F  W  S  F  F  K  I  K  Q  C  L  S  L  F  F  S  L  C  F  F  P  V  L  E  *  A  L  F  S  *  S  T  S  V  Y  S  G  T  P  L  L  T  N  L  P  A  P  A  L  K  I  T  I  V  R  K  R  I  R  N  W  V  F  L  L  L  N  W  T  N  Y  R  K  L  Q  G  M  N  C  *  W  V  T  I  V  R  C  V  W  M  K  L  R  M  S  K  L  L  E  L  F  R  V  V  T  M  D  F  T  L  N  V  L  I  L  G  F  Q  K  I  R  F  V  Q  F  V  E  L  N  W  S  R  S  S  S  I  H  L  K  V  T  H  V  E  D  I  P  N  Y  N  Y  F  K  L  Y  F  Y  *  C  S  I  D  Y  R  S  S  L  I  *  L  V  L  N  F  F  F  L  R  L  I  L  N  L  G  W  W  M  L  L  *  E  I  A  *  F  *  I   </second_frame>
            <third_frame>   V  P  I  T  Q  F  F  N  S  F  S  S  S  P  A  P  P  P  P  P  P  A  V  K  H  K  F  I  F  G  H  F  S  K  L  N  N  A  C  L  C  F  S  R  S  V  S  S  L  C  W  N  E  R  C  F  L  S  L  H  L  F  T  L  V  R  R  C  L  P  I  C  R  P  R  R  *  K  L  P  *  S  E  N  E  S  G  I  G  S  F  C  C  S  I  G  Q  T  T  E  N  Y  R  E  *  I  V  N  G  *  R  L  C  G  V  F  G  *  N  *  E  *  A  N  C  S  S  C  S  G  L  *  P  W  I  S  P  *  M  C  *  Y  L  A  F  K  K  S  D  L  S  S  L  *  N  *  T  G  A  G  V  L  Q  S  T  *  K  *  P  M  L  K  I  F  L  I  T  I  I  S  N  F  I  F  I  N  V  R  *  I  I  G  V  V  *  Y  D  W  C  *  I  F  F  F  F  V  *  F  *  I  W  G  G  G  C  C  Y  E  K  *  L  N  F  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74627" stop="74220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMLVSVFLALFLPCVGMSAVFLVYICLLWYAAAYQSAGPGAENYHSQKTNQELGLSAAQLDKLPKITGNELLMGNDCAVCLDEIENEQIARVVPGCNHGFHLECADTWLSKNPICPVCRTKLEPEFFNPPESNPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 9656 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1931 bytes was the average size of a spliced alignment
$ 9240 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2310 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 04:44:25
-->
