<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 05:23:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736426" ref_strand="+" ref_description="SGN-E736426 [LC05CH09]">
      <seq>cgtttctatgagaagagaattccgtcttgttcagaagcaaaattaacaatcttactctcagctaagaaagaaattagtgtgtgttgtgttggagaagaaaaagtaaaattccatgtcacacagctttcatcaacaccaaggattttacaatttctcaaatgtatatgagagatctgcaacgacgacgacgaagcatgaagatatgttaagagtacaaggctttgagccacagcaagttgaagtagcagcggcggatgttgagccgccgcctactgcaacggtttatgacgatggtggaatgttgacggagattatcagctacccatctgcgtggcggaaaaccgccacggagatattggatgatcagatccaatcgagtaattatcgatcgtggccacaaaaggagcagcagcatcttcagcagcagcagcaacttcttccacaatcaataataaacgatactgagcttcctctaatgaatcctcatattaaaccgtcatctccgcctcgctcttcatcttcacttcacatgttacttccaaactcagtagacacaaacaatcttcttcatcatcaaggatttcacttgcttaatccagcaccagtggaaactccgtctcaattcacatgggttccaggtagtagtagtggagaggacaattccgctaggattggaagggttgtggatggtcaaggtctttccttatcgctttctagaaatttcgaagctgctgcaaaattggaagacttgagaatcggaaacggtgaaatttacttgcataataatcaaggactattangtccgatgaataacaacaataatcaccatcaccatcaccaccatcaactgttacattcaggagtaattatggatcatcgtactcctcctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="12765" stop="14542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13065" g_stop="13531" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13532" i_stop="13749" i_length="218">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13750" g_stop="13921" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="638" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13922" i_stop="13993" i_length="72">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13994" g_stop="14242" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="893" r_length="255" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E736426" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13065" e_stop="13531"/>
          <exon e_start="13750" e_stop="13921"/>
          <exon e_start="13994" e_stop="14242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTCTATGAAAAGAGAATTCCGTCTTGTTCAGAAGCAAAATTAACAATCTTACTCTCAGCTAAGAAAGAAATTA--GTGTGTTGGGTTGGAGAAGAAAAAGTAAAATTCCATGTCACACAGCTTTCATCAACAACAAGGATTTTACAATTTCTCAAATGTATATGAGAGATCTGCAACGACGACGACGAAGCATGAAGATATGTTAAGAGTACAAGGCTTTGAGCCACAGCAAGTTGAAGTAGCAGCGGCGGATGTTGAGCCGCCGCCTACTGCAACGGTTTATGACGATGGTGGAATGTTGACGGAGATTATCAGCTACCCATCTGCGTGGCGGAAAACCGCCACGGAGATATTGGACGATCAGATCCAATCGAGTAATTATCGATCGTGGCCACAAAAGGAGCAGCAGCATCTTCAGCAGCAGCAGCAACAACTTCTTCCACAATCAATAATAAACGATACTGAGGTAATTAAATAATTGAACTGTTTAATCGTTAATTAGCTAATGATTTTGTATTATGCAGCTTGTACTCATCAAATCTCGAAGTTTGAAGTACAATTAGATTCATTTTTCGAGGAATTATCATCAATCAATCAATCACCTGGATAAGAGTCATGTACTCGGAGTTTTGTTCTTCTTTTTTTACTTATTGCTAATGAAAACTTTTGGCTATTTTCATGCAGCTTCCTCTAATGAATCCTCATATTAAACCGTCATCTCCGCCTCGCTCTTCATCTTCACTTCACATGTTACTTCCAAACTCAGTAGACACAAACAATCTTCTTCATCATCAAGGATTTCACTTGCTTAATCCAGCACCCGTGGAAACTCCGTCTCAATTCACATGGATTCCAGGTAATTAATTAATTATATTTTCAACACACCTATTACTTCTCGACGCTAATACTAAAATCATTTCTTCAACAGGTAGTAGTAGTGGAGAGGACAATTCCGCTAGGATTGGAAGGGTTGTGGATGGTCAAGGTCTTTCCTTATCGCTTTCTAGAAATTTCGAAGCTGCTGCAAAATTGGAAGACTTGAGAATCGGAAACGGTGAAATTTACTTGCATAATAATCAAGGACTATTAGGTCCGATTAATAACAACAATCATCA-C--CACCAT---CACCATCAACTGTTACATTCAGGAGTAATTATGGATCATCGTACTCCTCCTCATC</genome_strand>
        <mrna_strand>CGTTTCTATGAGAAGAGAATTCCGTCTTGTTCAGAAGCAAAATTAACAATCTTACTCTCAGCTAAGAAAGAAATTAGTGTGTGTTGTGTTGGAGAAGAAAAAGTAAAATTCCATGTCACACAGCTTTCATCAACACCAAGGATTTTACAATTTCTCAAATGTATATGAGAGATCTGCAACGACGACGACGAAGCATGAAGATATGTTAAGAGTACAAGGCTTTGAGCCACAGCAAGTTGAAGTAGCAGCGGCGGATGTTGAGCCGCCGCCTACTGCAACGGTTTATGACGATGGTGGAATGTTGACGGAGATTATCAGCTACCCATCTGCGTGGCGGAAAACCGCCACGGAGATATTGGATGATCAGATCCAATCGAGTAATTATCGATCGTGGCCACAAAAGGAGCAGCAGCATCTTCAGCAGCAGCAG---CAACTTCTTCCACAATCAATAATAAACGATACTGAG..........................................................................................................................................................................................................................CTTCCTCTAATGAATCCTCATATTAAACCGTCATCTCCGCCTCGCTCTTCATCTTCACTTCACATGTTACTTCCAAACTCAGTAGACACAAACAATCTTCTTCATCATCAAGGATTTCACTTGCTTAATCCAGCACCAGTGGAAACTCCGTCTCAATTCACATGGGTTCCAG........................................................................GTAGTAGTAGTGGAGAGGACAATTCCGCTAGGATTGGAAGGGTTGTGGATGGTCAAGGTCTTTCCTTATCGCTTTCTAGAAATTTCGAAGCTGCTGCAAAATTGGAAGACTTGAGAATCGGAAACGGTGAAATTTACTTGCATAATAATCAAGGACTATTANGTCCGATGAATAACAACAATAATCACCATCACCATCACCACCATCAACTGTTACATTCAGGAGTAATTATGGATCATCGTACTCCTCCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314181" ref_strand="+" ref_description="SGN-E314181 [cTOA-21-P9]">
      <seq>tcaaattcatgttggatacgcagcatcatcaccaagaatatcaaatgctctaagaaattcgcgatatgtaaaagctacacaagagctacttgaagaattttgctgtgtaggtaggggaaatttcaaaaatcaaagggtgaagaaattagacgatgatcaaaaccctaattccaactcggagagtgaagatcatcgtggtccctccaaagataatcatcctccattatcagctgctgagagatctgaatatcaacggaggaaaatcaagttgttatctatgctcgatgaggtagatgcaaggtacacgcgttactgtgagcaaatgcaggcgatggtgaattcattcgattcagtaatcggttacggtgcagcagctccatacacagcgttagctcagaaggcgatgtcgaggcatttccgatgtataaaggatgcgattgttggtcaattgaaacagacttgtaagtatttgggggagaaagatgtgacgggaacgagtgggttaacaaaaggggaaacaccgaggttgaaaatgcttgatcagaaattgaggcaacaaaaggcattacatcaaatgggaatgttggattctgatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="13983" stop="15951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14283" g_stop="14571" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14572" i_stop="15340" i_length="769">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15341" g_stop="15651" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="600" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E314181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14283" e_stop="14571"/>
          <exon e_start="15341" e_stop="15651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCATGTTGGATACGCAGCATCATCACCAAGAATATCAAATGCTCTAAGAAATTCGCGATATGTAAAAGCTACACAAGAGCTACTTGAAGAATTTTGCTGTGTAGGTAGGGGAAATTTCAAAAATCAAAGGGTGAAGAAATTAGACGATGATCAAAACCCTAATTCCAACTCGGAGAGTGAAGATCATCGTGGTCCCTCCAAAGATAATCATCCTCCATTATCAGCTGCTGAGAGATCTGAATATCAACGGAGGAAAATCAAGTTGTTATCTATGCTCGATGAGGCATGTCGTAGTAACTTACTTCCTTTAATCTCTCTTTCTCTATAATTATCAAGTAAAACGTCAAAACTTAGCTTGTTAAAAGGTCCATTTTTTTTTCATAATTATCAAAAGCTGATTACCTAATTACAATAGTCATTAACAACTAATAGTGACATTATTAGAATATTTAATATGGTACACTACAGTACTACCTTATACCTTTCATTATTAGTAAGATTTAATTAGTGTTTCACTTTTTAAAGAAGAGCTACATGTCGAATAACAAACGACATGCCTCCATTATAGGTTGTAGTTTAGCATTAAGGAAGCTAATACGAAAATTAATCTCTCTAATTAAAATAACTAATTCATTCCACAAAAGAAGCAAATGATTTATCATCTGGTACAGTTGGGGACCATTTCTCTTTTCTTCCTGATTCGATGATTCGAGGGTCTTTTTTAAATCATCAATTATTGATACTAAGCCGCGTTTATTAATCTTTGTTTAGTTGAAATTTTATTTTTGTTAACAACTCACTCAATTGCTCCCCACGTTCATTAATTCCTATTGCAGTATAGTACTAAGGAAGATGTCAGGCAGAGTGATTAATTTTATACATAAAAAGCAAATCTGATGATCTGATGAACGGTATTTGTTTAATTTGTGCTGGAAAAGCACAGCACAAAAATGCTTCGTGCTACGCATATTCCATCATGCACACCATGTGTTTGATATAAAAAATTAAATTAAATTAAATTAGAACTCTTTTTTTCTTCTTCACCGTTCCAGGTAGATGCAAGGTACACGCGTTACTGTGAGCAAATGCAGGCGATGGTGAATTCATTCGATTCAGTAATCGGTTACGGTGCAGCAGCTCCATACACAGCGTTAGCTCAGAAGGCGATGTCGAGGCATTTCCGATGTATAAAGGATGCGATTGTTGGTCAATTGAAACAGACTTGTAAGTATTTGGGGGAGAAAGATGTGACGGGAACGAGTGGGTTAACAAAAGGGGAAACACCGAGGTTGAAAATGCTTGATCAGAAATTGAGGCAACAAAAGGCATTACATCAAATGGGAATGTTGGATTCTGATGCTTG</genome_strand>
        <mrna_strand>TCAAATTCATGTTGGATACGCAGCATCATCACCAAGAATATCAAATGCTCTAAGAAATTCGCGATATGTAAAAGCTACACAAGAGCTACTTGAAGAATTTTGCTGTGTAGGTAGGGGAAATTTCAAAAATCAAAGGGTGAAGAAATTAGACGATGATCAAAACCCTAATTCCAACTCGGAGAGTGAAGATCATCGTGGTCCCTCCAAAGATAATCATCCTCCATTATCAGCTGCTGAGAGATCTGAATATCAACGGAGGAAAATCAAGTTGTTATCTATGCTCGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGCAAGGTACACGCGTTACTGTGAGCAAATGCAGGCGATGGTGAATTCATTCGATTCAGTAATCGGTTACGGTGCAGCAGCTCCATACACAGCGTTAGCTCAGAAGGCGATGTCGAGGCATTTCCGATGTATAAAGGATGCGATTGTTGGTCAATTGAAACAGACTTGTAAGTATTTGGGGGAGAAAGATGTGACGGGAACGAGTGGGTTAACAAAAGGGGAAACACCGAGGTTGAAAATGCTTGATCAGAAATTGAGGCAACAAAAGGCATTACATCAAATGGGAATGTTGGATTCTGATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396820" ref_strand="+" ref_description="SGN-E396820 [TUS-44-E10](-)">
      <seq>aatccaatttttaattatgatattggaagcagcagttttgatacaagtcacaaggttagagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacatttttatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagctcatctatgcttaaaattgaaaaaataattgatattcatattcctcacaaataatttgttccaaaattaaatgtttttattaagtgcattaatgattaattaattaaccatgtgaaaatattcttttattgttgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="27173" stop="26162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26873" g_stop="26820" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26722" g_stop="26461" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="316" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396820" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26873" e_stop="26820"/>
          <exon e_start="26722" e_stop="26461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTTGTTC</genome_strand>
        <mrna_strand>AATCCAATTTTTAATTATGATATTGGAAGCAGCAGTTTTGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTTTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTGCATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396836" ref_strand="+" ref_description="SGN-E396836 [TUS-44-G10](-)">
      <seq>tggaagcagcagttatgatacaagtcacaaggttggagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacattcttatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagctcatctatgcttaaaattgaaaaaataattgatattcatattcctcacaaataatttgttccaaaattaaatgtttttattaagaacattaatgattaattaattaaccatgtgaaaatattcttttattgttgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="27150" stop="26162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26850" g_stop="26820" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26722" g_stop="26461" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="293" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396836" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26850" e_stop="26820"/>
          <exon e_start="26722" e_stop="26461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTTGTTC</genome_strand>
        <mrna_strand>TGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTGGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGAACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396853" ref_strand="+" ref_description="SGN-E396853 [TUS-44-I10](-)">
      <seq>aagagaggaatttgcaattcaaacatatatcaaattcacttttctcaaagaataagaatccttatgctaaatcagcacaacttactgtatggttaggagatttaaattatagactccaaggcataaattcttatcctgctagagatttcatccatggaaatttccaccaaatgttaactagcaaagatcaactattacaagaagcagaaagaggagagatttttaatggttattgtgaaggtgcattagattttaaaccaacttataaatatgatattggaagcagcagttatgatacaagtcacaaggttagagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacatttttatgaagccattgaaagcatacaaagctttgatcacaagccagtcaaagctcatttatgcttaaaattgaaaaaataattgatattcatattcctcacaaataatttgttccaaaattaaatgtttttattaagtacattaatgattaattaattaaccatgtgaaaatattcttttattgttgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="27518" stop="26163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27218" g_stop="27049" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26820" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="308" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26722" g_stop="26465" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="566" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396853" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27218" e_stop="27049"/>
          <exon e_start="26957" e_stop="26820"/>
          <exon e_start="26722" e_stop="26465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAAGTATGTACATTTACGAATTTTTTAAGTTATATATTTTATATACACTGACGGTATAAAGATTTGAATATTTTGTTTTCGACTGATATTGTAGATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTT</genome_strand>
        <mrna_strand>AAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATTTCATCCATGGAAATTTCCACCAA...........................................................................................ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTTTTATGAAGCCATTGAAAGCATACAAAGCTTTGATCACAAGCCAGTCAAAGCTCATTTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235574" ref_strand="+" ref_description="SGN-E235574 [cLED-11-J20]">
      <seq>tattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctcgtaatgtagaagagaggaatttgcaattcaaacatatatcaaattcacttttctcaaagaataagaatccttatgctaaatcagcacaacttactgtatggttaggagatttaaattatagactccaaggcataaattcttatcctgctagagatctcatccatggaaatctccaccaaatgttaactagcaaagatcaactattacaagaagcagaaagaggagagatttttaatggttattgtgaaggtgcattagattttaaaccaacttataaatatgatattggaagcagcagttatgatacaagtcacaaggttagagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacattcttatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagctcatctatgcttaaaattgaaaaaataattgatattcatattcctcacaaataatttgttccaaaattaaatgtttttattaagtacattaatgattaattaattaaccatgtgaaaatattctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="28562" stop="26171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28262" g_stop="28207" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27236" g_stop="27049" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="244" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26957" g_stop="26820" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="382" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26722" g_stop="26471" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="634" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E235574" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28262" e_stop="28207"/>
          <exon e_start="27236" e_stop="27049"/>
          <exon e_start="26957" e_stop="26820"/>
          <exon e_start="26722" e_stop="26471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAAGTATGTACATTTACGAATTTTTTAAGTTATATATTTTATATACACTGACGGTATAAAGATTTGAATATTTTGTTTTCGACTGATATTGTAGATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTT</genome_strand>
        <mrna_strand>TATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGGAAATCTCCACCAA...........................................................................................ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377858" ref_strand="+" ref_description="SGN-E377858 [TUS-21-N9]">
      <seq>tattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctcgtaatgtagaagagaggaatttgcaattcaaacatatatcaaattcacttttctcaaagaataagaatccttatgctaaatcagcacaacttactgtatggttaggagatttaaattatatactccaaggcataaattcttatcctgctagagatctcatccatggaaatctccaccaaatgttaactagcaaagatcaactattacaagaagcagaaagaggagagatttttaatggttattgtgaaggtgcattacattttaaaccaacttataaatatgatattggaagcagcagttatgatacaagtcacaaggttagagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacattcttatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagctcatctatgcttaaaattgaaaaaataattgatattcatattcctcacaaataatttgttccaaaattaaatgtttttattaagtacattaatgattaattaattaaccatgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="28562" stop="26181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28262" g_stop="28207" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27236" g_stop="27049" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="244" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26957" g_stop="26820" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="382" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26722" g_stop="26481" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="624" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E377858" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28262" e_stop="28207"/>
          <exon e_start="27236" e_stop="27049"/>
          <exon e_start="26957" e_stop="26820"/>
          <exon e_start="26722" e_stop="26481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAAGTATGTACATTTACGAATTTTTTAAGTTATATATTTTATATACACTGACGGTATAAAGATTTGAATATTTTGTTTTCGACTGATATTGTAGATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAA</genome_strand>
        <mrna_strand>TATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATATACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGGAAATCTCCACCAA...........................................................................................ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTACATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396776" ref_strand="+" ref_description="SGN-E396776 [TUS-43-F18](-)">
      <seq>tttacaagagaagtaaaagtggataagcatgaagttggaggattaggttggttaatcagaagaaaaaaaggagcagtggctattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctcgtaatgtagaagagaggaatttgcaattcaaacatatatcaaattcacttttctcaaagaataagaatccttatgctaaatcagcacaacttactgtatggttaggagatttaaattatagactccaaggcataaattcttatcctgctagagatctcatccatggaaatctccaccaaatgttaactagcaaagatcaattattacaagaagcagaaagaggagagatttttaatggttattgtgaaggtgcattagattttaaaccaacttataaatatgatattggaagcagcagttatgatacaagtcacaaggttagagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacattcttatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagttcatttatgcttaaaattgaaaaaataattgatattcatattcctcacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="28643" stop="26244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28470" g_stop="28461" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28332" g_stop="28207" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="136" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27236" g_stop="27049" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="324" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26957" g_stop="26820" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="462" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26722" g_stop="26541" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="644" r_length="182" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396776" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28470" e_stop="28461"/>
          <exon e_start="28332" e_stop="28207"/>
          <exon e_start="27236" e_stop="27049"/>
          <exon e_start="26957" e_stop="26820"/>
          <exon e_start="26722" e_stop="26541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAAGAGGTATAGTTTCTTTATTTCTTTTATTTATATCACAAGAATATATATATTACTAAACTTTTTTGTTAATTGATTAAATAAGGTTATTAATTAATTAATTAATGTACAATAAATGTGGTTTTTTTATATAGAAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAAGTATGTACATTTACGAATTTTTTAAGTTATATATTTTATATACACTGACGGTATAAAGATTTGAATATTTTGTTTTCGACTGATATTGTAGATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTT</genome_strand>
        <mrna_strand>TTTACAAGAG................................................................................................................................AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGGAAATCTCCACCAA...........................................................................................ATGTTAACTAGCAAAGATCAATTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGTTCATTTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374442" ref_strand="+" ref_description="SGN-E374442 [TUS-38-H10](-)">
      <seq>gtaatgcaatctgtacaactctatgtatttggccccaagaattcagagcaatttacaagagaagtaaaagtggataagcatgaagttggaggattaggttggttaatcagaagaaaaaaaggagcagtggctattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctcgtaatgtagaagagaggaatttgcaattcaaacatatatcaaattcacttttctcaaagaataagaatccttatgctaaatcagcacaacttactgtatggttaggagatttaaattatagactccaaggcataaattcttatcctgctagagatctcatccatggaaatctccaccaaatgttaactagcaaagatcaactattacaagaagcagaaagaggagagatttttaatggttattgtgaaggtgcattagattttaaaccaacttataaatatgatattggaagcagcagttatgatacaagtcacaaggttagagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacattcttatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagctcatctatgcttaaaattgaaaaaataattgatattcatattcctcacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="28821" stop="26244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28521" g_stop="28461" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28332" g_stop="28207" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="187" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27236" g_stop="27049" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="375" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26957" g_stop="26820" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="513" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26722" g_stop="26542" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="694" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E374442" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28521" e_stop="28461"/>
          <exon e_start="28332" e_stop="28207"/>
          <exon e_start="27236" e_stop="27049"/>
          <exon e_start="26957" e_stop="26820"/>
          <exon e_start="26722" e_stop="26542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAGGTATAGTTTCTTTATTTCTTTTATTTATATCACAAGAATATATATATTACTAAACTTTTTTGTTAATTGATTAAATAAGGTTATTAATTAATTAATTAATGTACAATAAATGTGGTTTTTTTATATAGAAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAAGTATGTACATTTACGAATTTTTTAAGTTATATATTTTATATACACTGACGGTATAAAGATTTGAATATTTTGTTTTCGACTGATATTGTAGATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATT</genome_strand>
        <mrna_strand>GTAATGCAATCTGTACAACTCTATGTATTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG................................................................................................................................AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGGAAATCTCCACCAA...........................................................................................ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391574" ref_strand="+" ref_description="SGN-E391574 [TUS-16-O11](-)">
      <seq>taatcagaggaaaaaaaggagcagtggctattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctagtaatgtagaagagaggaatttgcaattcaaacatatatcaaattcacttttgtcaaagaataagaatccttatgttaaatcagcacaacttactgtatggttaggagatttaaattatagactccaaggcataaattcttatcttgctagagatctcatccatggaaatctccaccaaatgttaactagcaaagatcaactattacaagaagcagaaagaggagagatttttaatggttattgtgaaggtgcatttgattttaaaccaacttataaatatgatattggaagcagcagttatgatacaagtcacaaggttagagtaccatcagggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacattattatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagatcatttatgtttaaaattgaaaaaataattgatattcaatattcctcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="28590" stop="26244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28290" g_stop="28207" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27236" g_stop="27049" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="272" r_length="188" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26957" g_stop="26820" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="410" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26722" g_stop="26548" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="586" r_length="176" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="601"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E391574" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28290" e_stop="28207"/>
          <exon e_start="27236" e_stop="27049"/>
          <exon e_start="26957" e_stop="26820"/>
          <exon e_start="26722" e_stop="26548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAAGTATGTACATTTACGAATTTTTTAAGTTATATATTTTATATACACTGACGGTATAAAGATTTGAATATTTTGTTTTCGACTGATATTGTAGATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTC-ATATTCCTCACAA</genome_strand>
        <mrna_strand>TAATCAGAGGAAAAAAAGGAGCAGTGGCTATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTAGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTGTCAAAGAATAAGAATCCTTATGTTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCTTGCTAGAGATCTCATCCATGGAAATCTCCACCAA...........................................................................................ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTTGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCAGGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTATTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGATCATTTATGTTTAAAATTGAAAAAATAATTGATATTCAATATTCCTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379598" ref_strand="+" ref_description="SGN-E379598 [TUS-3-O22](-)">
      <seq>gaggcacctagaaataatattgcaaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctgtaatgcaatctgtacaactctatgtatttggccccaagaattcagagcaatttacaagagaagtaaaagtggataagcatgaagttggaggattaggttggttaatcagaagaaaaaaaggagcagtggctattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctcgtaatgtagaagagaggaatttgcaattcaaacatatatcaaattcacttttctcaaagaataagaatccttatgctaaatcagcacaacttactgtatggttaggagatttaaattatagactccaaggcataaattcttatcctgctagagatctcatccatggaaatctccaccaaatgttaactagcaaagatcaactattacaagaagcagaaagaggagagatttttaatggttattgtgaaggtgcattagattttaaaccaacttataaatatgatattggaagcagcagttatgatacaagtcacaaggttagagtaccatcatggacagacagaatattattcaagatagacagtgacaatgtaaatgcaactttacattcttatgaagccattgaaagcatacaaagctctgatcacaagccagtcaaagctcatggatgcttaaaatgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30076" stop="26273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29776" g_stop="29718" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180">
            <donor d_prob="0.943" d_score="0.94"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28537" g_stop="28461" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="136" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28332" g_stop="28207" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="262" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27236" g_stop="27049" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="450" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26957" g_stop="26820" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="588" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26722" g_stop="26573" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="737" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E379598" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29776" e_stop="29718"/>
          <exon e_start="28537" e_stop="28461"/>
          <exon e_start="28332" e_stop="28207"/>
          <exon e_start="27236" e_stop="27049"/>
          <exon e_start="26957" e_stop="26820"/>
          <exon e_start="26722" e_stop="26573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATATGTATGTATATCTATCTATCTTCGATTTATTTATTTCATACTTCTTTTACGAAAAATTTAAGTTATATATACTAATAGTTATAATATTCGATATTTTTGCATTATCAACTTGTACAAAATGATTGCTTATTCAATTTACTAATGCAGGCTAGACATGTTAGAAGTTATTATTTCTGTTTTAATTTATTTGTCTTTTTTTTTTTTCAGTCTATTTTAATTTTCTTTAAAAACCACAAAACTAAATAATATGTTGGTACATTCAACGTATCACCAAAAAATTCAAAAGTTTTTCTTTTACTTTCTTAACTCTGTACAAAATTAAGACTAGATAAACAAACTGAAACAAAAAGACTGTAATGATATAAAATGTAAAAATTTTAATTTCTTTGCTCTTCGTTTTCTCTATTATTAAATGTAAATTTTTTTTTAGCAAATTGGTTTTTTTCTCAGGGTAGCAAGGTTGTATACATGTTTATGGAAATGAAGAAAATAAAATCCAAAGACGATAAGTTCAAATATAGGAAGATAATAAGAAGCATATTGACAATGACTAATTACTAATTTTGACGTGTTTTCCCTCTATTATAAAGTTTTAATTTCAATTATTTTGTTTTTCATCCTAGAAAAGTCATGTGTTCCTCGATATTTTTAGTAATAATTTTCGTGGTCCTATTTAAAATTCTAAGAAAAAACAGTACTAATATACATTGCATCTTGACATATATAATTTTTTTGTTGTTACAATTTTTTTTATCTAATTCTTTTCCATATGACTTTTTAATTCCATTTTGAATTGTTTTACATGCATTGTTAATTTTTATGAAATTATCTCTATATTGCGTAATACACTATTTTTTTTCTTCAAAATTTATTTTATGAGATTATATAAAATAAATATGTTATTATTGTTATGATACAGAGGTCTACATGGATTTGGTTTTAATATGGTTTCAATTCAACCACAATAACACTACTAGAAAGTCACTTTCTTTTTATTGTCTCTACTCTCCAGTTATATTACTCAAAAAATTTATCTGTATTGAGTGTTTGTATCAAATTAATGTAATTTTCATTATGATATAATTTAATGAAGTAAAACACATATTTAGTAATTATGACATGAATAAACTAACAAAAGTTATAATATTTTTGACATTTTTTCATTAATTTTGGTGAGGAAGGCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAGGTATAGTTTCTTTATTTCTTTTATTTATATCACAAGAATATATATATTACTAAACTTTTTTGTTAATTGATTAAATAAGGTTATTAATTAATTAATTAATGTACAATAAATGTGGTTTTTTTATATAGAAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAAGTATGTACATTTACGAATTTTTTAAGTTATATATTTTATATACACTGACGGTATAAAGATTTGAATATTTTGTTTTCGACTGATATTGTAGATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAGGTAATTAAATTAATTAATTTATAAGTCTAATAATAATTTATAATTGATCCTTTTATTCAAATCTTTTTTTACAATAATTGTTTGTTTAAAAATGCAGGTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAA</genome_strand>
        <mrna_strand>GAGGCACCTAGAAATAATATTGCAAAGTTATTGAAGAACACATTGGCTGATACTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGGAAAATCTGTAATGCAATCTGTACAACTCTATGTATTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG................................................................................................................................AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGGAAATCTCCACCAA...........................................................................................ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG.................................................................................................GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATGGATGCTTAAAA-TGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379214" ref_strand="+" ref_description="SGN-E379214 [TUS-3-O22]">
      <seq>ttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgtgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgcaagaggcacctagaaataatatttgcaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctgtaatgcaatctgtacaactctatgtatttggccccaagaattcagagcaatttacaagagaagtaaaagtggataagcatgaagttggaggattaggttggttaatcagaagaaaaaaaggagcagtggctattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctcgtaatgtagaagagaggaatttgncattcaaacatatatcaaattcnacttttctcaagaataagaatccttatgctaaatcagcacaacttactgtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30907" stop="26827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30607" g_stop="30498" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30497" i_stop="30400" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30399" g_stop="30234" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="276" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="407" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28537" g_stop="28461" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="484" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28332" g_stop="28207" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="610" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27236" g_stop="27127" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="720" r_length="110" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E379214" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30607" e_stop="30498"/>
          <exon e_start="30399" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
          <exon e_start="28537" e_stop="28461"/>
          <exon e_start="28332" e_stop="28207"/>
          <exon e_start="27236" e_stop="27127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATATGTATGTATATCTATCTATCTTCGATTTATTTATTTCATACTTCTTTTACGAAAAATTTAAGTTATATATACTAATAGTTATAATATTCGATATTTTTGCATTATCAACTTGTACAAAATGATTGCTTATTCAATTTACTAATGCAGGCTAGACATGTTAGAAGTTATTATTTCTGTTTTAATTTATTTGTCTTTTTTTTTTTTCAGTCTATTTTAATTTTCTTTAAAAACCACAAAACTAAATAATATGTTGGTACATTCAACGTATCACCAAAAAATTCAAAAGTTTTTCTTTTACTTTCTTAACTCTGTACAAAATTAAGACTAGATAAACAAACTGAAACAAAAAGACTGTAATGATATAAAATGTAAAAATTTTAATTTCTTTGCTCTTCGTTTTCTCTATTATTAAATGTAAATTTTTTTTTAGCAAATTGGTTTTTTTCTCAGGGTAGCAAGGTTGTATACATGTTTATGGAAATGAAGAAAATAAAATCCAAAGACGATAAGTTCAAATATAGGAAGATAATAAGAAGCATATTGACAATGACTAATTACTAATTTTGACGTGTTTTCCCTCTATTATAAAGTTTTAATTTCAATTATTTTGTTTTTCATCCTAGAAAAGTCATGTGTTCCTCGATATTTTTAGTAATAATTTTCGTGGTCCTATTTAAAATTCTAAGAAAAAACAGTACTAATATACATTGCATCTTGACATATATAATTTTTTTGTTGTTACAATTTTTTTTATCTAATTCTTTTCCATATGACTTTTTAATTCCATTTTGAATTGTTTTACATGCATTGTTAATTTTTATGAAATTATCTCTATATTGCGTAATACACTATTTTTTTTCTTCAAAATTTATTTTATGAGATTATATAAAATAAATATGTTATTATTGTTATGATACAGAGGTCTACATGGATTTGGTTTTAATATGGTTTCAATTCAACCACAATAACACTACTAGAAAGTCACTTTCTTTTTATTGTCTCTACTCTCCAGTTATATTACTCAAAAAATTTATCTGTATTGAGTGTTTGTATCAAATTAATGTAATTTTCATTATGATATAATTTAATGAAGTAAAACACATATTTAGTAATTATGACATGAATAAACTAACAAAAGTTATAATATTTTTGACATTTTTTCATTAATTTTGGTGAGGAAGGCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAGGTATAGTTTCTTTATTTCTTTTATTTATATCACAAGAATATATATATTACTAAACTTTTTTGTTAATTGATTAAATAAGGTTATTAATTAATTAATTAATGTACAATAAATGTGGTTTTTTTATATAGAAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTC-ACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGG</genome_strand>
        <mrna_strand>TTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAG..................................................................................................AAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGGAAAATCTGTAATGCAATCTGTACAACTCTATGTATTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG................................................................................................................................AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTCGTAATGTAGAAGAGAGGAATTTGNCATTCAAACATATATCAAATTCNACTTTTCTC-AAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374443" ref_strand="+" ref_description="SGN-E374443 [TUS-38-H10]">
      <seq>ttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgtgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgcaagaggcacctagaaataatatttgcaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctgtaatgcaatctgtacaactctatgtatttggccccaagaattcagagcaatttacaagagaagtaaaagtggataagcatgaagttggaggattaggttggttaatcagaagaaaaaaaggagcagtggctattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctcgtaatgtagaagagaggaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30907" stop="26904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30607" g_stop="30498" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30497" i_stop="30400" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30399" g_stop="30234" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="276" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="407" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28537" g_stop="28461" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="484" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28332" g_stop="28207" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="610" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27236" g_stop="27204" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="643" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E374443" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30607" e_stop="30498"/>
          <exon e_start="30399" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
          <exon e_start="28537" e_stop="28461"/>
          <exon e_start="28332" e_stop="28207"/>
          <exon e_start="27236" e_stop="27204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATATGTATGTATATCTATCTATCTTCGATTTATTTATTTCATACTTCTTTTACGAAAAATTTAAGTTATATATACTAATAGTTATAATATTCGATATTTTTGCATTATCAACTTGTACAAAATGATTGCTTATTCAATTTACTAATGCAGGCTAGACATGTTAGAAGTTATTATTTCTGTTTTAATTTATTTGTCTTTTTTTTTTTTCAGTCTATTTTAATTTTCTTTAAAAACCACAAAACTAAATAATATGTTGGTACATTCAACGTATCACCAAAAAATTCAAAAGTTTTTCTTTTACTTTCTTAACTCTGTACAAAATTAAGACTAGATAAACAAACTGAAACAAAAAGACTGTAATGATATAAAATGTAAAAATTTTAATTTCTTTGCTCTTCGTTTTCTCTATTATTAAATGTAAATTTTTTTTTAGCAAATTGGTTTTTTTCTCAGGGTAGCAAGGTTGTATACATGTTTATGGAAATGAAGAAAATAAAATCCAAAGACGATAAGTTCAAATATAGGAAGATAATAAGAAGCATATTGACAATGACTAATTACTAATTTTGACGTGTTTTCCCTCTATTATAAAGTTTTAATTTCAATTATTTTGTTTTTCATCCTAGAAAAGTCATGTGTTCCTCGATATTTTTAGTAATAATTTTCGTGGTCCTATTTAAAATTCTAAGAAAAAACAGTACTAATATACATTGCATCTTGACATATATAATTTTTTTGTTGTTACAATTTTTTTTATCTAATTCTTTTCCATATGACTTTTTAATTCCATTTTGAATTGTTTTACATGCATTGTTAATTTTTATGAAATTATCTCTATATTGCGTAATACACTATTTTTTTTCTTCAAAATTTATTTTATGAGATTATATAAAATAAATATGTTATTATTGTTATGATACAGAGGTCTACATGGATTTGGTTTTAATATGGTTTCAATTCAACCACAATAACACTACTAGAAAGTCACTTTCTTTTTATTGTCTCTACTCTCCAGTTATATTACTCAAAAAATTTATCTGTATTGAGTGTTTGTATCAAATTAATGTAATTTTCATTATGATATAATTTAATGAAGTAAAACACATATTTAGTAATTATGACATGAATAAACTAACAAAAGTTATAATATTTTTGACATTTTTTCATTAATTTTGGTGAGGAAGGCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAGGTATAGTTTCTTTATTTCTTTTATTTATATCACAAGAATATATATATTACTAAACTTTTTTGTTAATTGATTAAATAAGGTTATTAATTAATTAATTAATGTACAATAAATGTGGTTTTTTTATATAGAAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTGGTAAGTTCCCTAAATCTCTATATATTCTTTTATCATTAATCAAATATATTTAGCTGTTCGGAATATAATCAAATGAAAATATAGTACTCTTTCCAATATATTTAATTTGATACATTCACTGTTGATATTTCACGTCAACTTTTTATACTTATATGATGATTTCTATGAATATAAAATTTAAAAGTAATTTATTTTTAAAATAATGTATCGTATAAATTAAGACAGAGAAAGTACTGATCAAAAAATCAAATCAAAAAACCTTTTGACTTATCTCCTTCTTAATATTTTAGATTTAAATTAAACTTATATACGCTTTATATTCTCTGTATGTAGAGTGGTAGTTAGGTAGGTATAAAGATTGGACCCATAATGGACCTAATTGCTTAGAGTACGTTGAAAAATATAACAAAAATCTCTTCGTTTTATATTAGTTATTTATTTTTTTTATATTCTTTCTCTCGATTTTGTATTTTGATAAGTTTAATAACTATTTTTAGTACCGTAGACGCTTAATACGGACGACATTTAAAGAGAGTATGTGTACATTAAAATTTGCTTTCAAATTCATCACGTAATGTTGGTGACACAAAAATTCAAACTGTATAACTGCCTCCACCTTTTTGTGGCCATTTTTTAAATAGTGCCTACTAGGCCCAATGTAAAAACTAAATATATCTTTGGGTCATTTGCACTTTTGGCCTTATTTTGTGTTGATCTTTTAACTTTTGCCCCTATTAAAAGTTTATATTTCCATATTTTAATATCGTTTATATACAACATGTCTTTAGTTTCTAAAATAACTTATGCCTCATTAGATATAACTAGTTCGATTGCTAAAGGGTTAAAAAAAAGAAAAAGGTCATTTGAAGGACAAAACGTGTAATATTATGTATATATATTTCGTATCAGCTTAGAAAAGTCTAATTTTGATTATACATAATTTATCGATTATTCAATTTTACGTTTGCAGCTCATGCTCGTAATGTAGAAGAGAGGAATTTGC</genome_strand>
        <mrna_strand>TTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAG..................................................................................................AAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGGAAAATCTGTAATGCAATCTGTACAACTCTATGTATTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG................................................................................................................................AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGCTCGTAATGTAGAAGAGAGGAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395845" ref_strand="+" ref_description="SGN-E395845 [TUS-17-P12]">
      <seq>cttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgtgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgcaagaggcacctagaaataatatttgcaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctgtaatgcaatctgtacaactctatgtatttggccccaagaattcagagcaatttacaagagaagtaaaagtggataagcatgaagttggaggattaggttggttaatcagaagaaaaaaaggagcagtggctattaaaatcagctataaaggcatacaaatggtttttatttcttgtcacctctctgctcatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30908" stop="27899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30608" g_stop="30498" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30497" i_stop="30400" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30399" g_stop="30234" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="277" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="408" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28537" g_stop="28461" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="485" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28332" g_stop="28207" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="611" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E395845" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30608" e_stop="30498"/>
          <exon e_start="30399" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
          <exon e_start="28537" e_stop="28461"/>
          <exon e_start="28332" e_stop="28207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATATGTATGTATATCTATCTATCTTCGATTTATTTATTTCATACTTCTTTTACGAAAAATTTAAGTTATATATACTAATAGTTATAATATTCGATATTTTTGCATTATCAACTTGTACAAAATGATTGCTTATTCAATTTACTAATGCAGGCTAGACATGTTAGAAGTTATTATTTCTGTTTTAATTTATTTGTCTTTTTTTTTTTTCAGTCTATTTTAATTTTCTTTAAAAACCACAAAACTAAATAATATGTTGGTACATTCAACGTATCACCAAAAAATTCAAAAGTTTTTCTTTTACTTTCTTAACTCTGTACAAAATTAAGACTAGATAAACAAACTGAAACAAAAAGACTGTAATGATATAAAATGTAAAAATTTTAATTTCTTTGCTCTTCGTTTTCTCTATTATTAAATGTAAATTTTTTTTTAGCAAATTGGTTTTTTTCTCAGGGTAGCAAGGTTGTATACATGTTTATGGAAATGAAGAAAATAAAATCCAAAGACGATAAGTTCAAATATAGGAAGATAATAAGAAGCATATTGACAATGACTAATTACTAATTTTGACGTGTTTTCCCTCTATTATAAAGTTTTAATTTCAATTATTTTGTTTTTCATCCTAGAAAAGTCATGTGTTCCTCGATATTTTTAGTAATAATTTTCGTGGTCCTATTTAAAATTCTAAGAAAAAACAGTACTAATATACATTGCATCTTGACATATATAATTTTTTTGTTGTTACAATTTTTTTTATCTAATTCTTTTCCATATGACTTTTTAATTCCATTTTGAATTGTTTTACATGCATTGTTAATTTTTATGAAATTATCTCTATATTGCGTAATACACTATTTTTTTTCTTCAAAATTTATTTTATGAGATTATATAAAATAAATATGTTATTATTGTTATGATACAGAGGTCTACATGGATTTGGTTTTAATATGGTTTCAATTCAACCACAATAACACTACTAGAAAGTCACTTTCTTTTTATTGTCTCTACTCTCCAGTTATATTACTCAAAAAATTTATCTGTATTGAGTGTTTGTATCAAATTAATGTAATTTTCATTATGATATAATTTAATGAAGTAAAACACATATTTAGTAATTATGACATGAATAAACTAACAAAAGTTATAATATTTTTGACATTTTTTCATTAATTTTGGTGAGGAAGGCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAGGTATAGTTTCTTTATTTCTTTTATTTATATCACAAGAATATATATATTACTAAACTTTTTTGTTAATTGATTAAATAAGGTTATTAATTAATTAATTAATGTACAATAAATGTGGTTTTTTTATATAGAAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG</genome_strand>
        <mrna_strand>CTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAG..................................................................................................AAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGGAAAATCTGTAATGCAATCTGTACAACTCTATGTATTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG................................................................................................................................AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATCAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241889" ref_strand="+" ref_description="SGN-E241889 [cLED-27-H19]">
      <seq>ttttttttataaacttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaaggtaattaataatttttctatatatttcgatccattttatttgctatattattactatataatattcttttgatgaaattaaattatttttttctaaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgtgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgcaagaggcacctagaaataatatttgcaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctgtaatgcaatctgtacaactctatgtatttggccccaagaattcagagcaatttacaagagaagtaaaagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30921" stop="28161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30621" g_stop="30234" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="519" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28537" g_stop="28461" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="596" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28332" g_stop="28320" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="609" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E241889" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30621" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
          <exon e_start="28537" e_stop="28461"/>
          <exon e_start="28332" e_stop="28320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATATGTATGTATATCTATCTATCTTCGATTTATTTATTTCATACTTCTTTTACGAAAAATTTAAGTTATATATACTAATAGTTATAATATTCGATATTTTTGCATTATCAACTTGTACAAAATGATTGCTTATTCAATTTACTAATGCAGGCTAGACATGTTAGAAGTTATTATTTCTGTTTTAATTTATTTGTCTTTTTTTTTTTTCAGTCTATTTTAATTTTCTTTAAAAACCACAAAACTAAATAATATGTTGGTACATTCAACGTATCACCAAAAAATTCAAAAGTTTTTCTTTTACTTTCTTAACTCTGTACAAAATTAAGACTAGATAAACAAACTGAAACAAAAAGACTGTAATGATATAAAATGTAAAAATTTTAATTTCTTTGCTCTTCGTTTTCTCTATTATTAAATGTAAATTTTTTTTTAGCAAATTGGTTTTTTTCTCAGGGTAGCAAGGTTGTATACATGTTTATGGAAATGAAGAAAATAAAATCCAAAGACGATAAGTTCAAATATAGGAAGATAATAAGAAGCATATTGACAATGACTAATTACTAATTTTGACGTGTTTTCCCTCTATTATAAAGTTTTAATTTCAATTATTTTGTTTTTCATCCTAGAAAAGTCATGTGTTCCTCGATATTTTTAGTAATAATTTTCGTGGTCCTATTTAAAATTCTAAGAAAAAACAGTACTAATATACATTGCATCTTGACATATATAATTTTTTTGTTGTTACAATTTTTTTTATCTAATTCTTTTCCATATGACTTTTTAATTCCATTTTGAATTGTTTTACATGCATTGTTAATTTTTATGAAATTATCTCTATATTGCGTAATACACTATTTTTTTTCTTCAAAATTTATTTTATGAGATTATATAAAATAAATATGTTATTATTGTTATGATACAGAGGTCTACATGGATTTGGTTTTAATATGGTTTCAATTCAACCACAATAACACTACTAGAAAGTCACTTTCTTTTTATTGTCTCTACTCTCCAGTTATATTACTCAAAAAATTTATCTGTATTGAGTGTTTGTATCAAATTAATGTAATTTTCATTATGATATAATTTAATGAAGTAAAACACATATTTAGTAATTATGACATGAATAAACTAACAAAAGTTATAATATTTTTGACATTTTTTCATTAATTTTGGTGAGGAAGGCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAGGTATAGTTTCTTTATTTCTTTTATTTATATCACAAGAATATATATATTACTAAACTTTTTTGTTAATTGATTAAATAAGGTTATTAATTAATTAATTAATGTACAATAAATGTGGTTTTTTTATATAGAAGTAAAAGTGGA</genome_strand>
        <mrna_strand>TTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGGAAAATCTGTAATGCAATCTGTACAACTCTATGTATTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG................................................................................................................................AAGTAAAAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208187" ref_strand="+" ref_description="SGN-E208187 [cLEC-37-M21]">
      <seq>ttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgtgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgcaagaggcacctagaaataatatttgcaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctgtaatgcaatctgtacaactctatgtatttggccccaagaattcagagcaatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30907" stop="28166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30607" g_stop="30498" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30497" i_stop="30400" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30399" g_stop="30234" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="276" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="407" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28537" g_stop="28466" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="479" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E208187" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30607" e_stop="30498"/>
          <exon e_start="30399" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
          <exon e_start="28537" e_stop="28466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATATGTATGTATATCTATCTATCTTCGATTTATTTATTTCATACTTCTTTTACGAAAAATTTAAGTTATATATACTAATAGTTATAATATTCGATATTTTTGCATTATCAACTTGTACAAAATGATTGCTTATTCAATTTACTAATGCAGGCTAGACATGTTAGAAGTTATTATTTCTGTTTTAATTTATTTGTCTTTTTTTTTTTTCAGTCTATTTTAATTTTCTTTAAAAACCACAAAACTAAATAATATGTTGGTACATTCAACGTATCACCAAAAAATTCAAAAGTTTTTCTTTTACTTTCTTAACTCTGTACAAAATTAAGACTAGATAAACAAACTGAAACAAAAAGACTGTAATGATATAAAATGTAAAAATTTTAATTTCTTTGCTCTTCGTTTTCTCTATTATTAAATGTAAATTTTTTTTTAGCAAATTGGTTTTTTTCTCAGGGTAGCAAGGTTGTATACATGTTTATGGAAATGAAGAAAATAAAATCCAAAGACGATAAGTTCAAATATAGGAAGATAATAAGAAGCATATTGACAATGACTAATTACTAATTTTGACGTGTTTTCCCTCTATTATAAAGTTTTAATTTCAATTATTTTGTTTTTCATCCTAGAAAAGTCATGTGTTCCTCGATATTTTTAGTAATAATTTTCGTGGTCCTATTTAAAATTCTAAGAAAAAACAGTACTAATATACATTGCATCTTGACATATATAATTTTTTTGTTGTTACAATTTTTTTTATCTAATTCTTTTCCATATGACTTTTTAATTCCATTTTGAATTGTTTTACATGCATTGTTAATTTTTATGAAATTATCTCTATATTGCGTAATACACTATTTTTTTTCTTCAAAATTTATTTTATGAGATTATATAAAATAAATATGTTATTATTGTTATGATACAGAGGTCTACATGGATTTGGTTTTAATATGGTTTCAATTCAACCACAATAACACTACTAGAAAGTCACTTTCTTTTTATTGTCTCTACTCTCCAGTTATATTACTCAAAAAATTTATCTGTATTGAGTGTTTGTATCAAATTAATGTAATTTTCATTATGATATAATTTAATGAAGTAAAACACATATTTAGTAATTATGACATGAATAAACTAACAAAAGTTATAATATTTTTGACATTTTTTCATTAATTTTGGTGAGGAAGGCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTAC</genome_strand>
        <mrna_strand>TTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAG..................................................................................................AAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGGAAAATCTGTAATGCAATCTGTACAACTCTATGTATTTGGCCCCAAGAATTCAGAGCAATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396625" ref_strand="+" ref_description="SGN-E396625 [TUS-43-F18]">
      <seq>cttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgtgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgcaagaggcacctagaaataatatttgcaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctgtaatgcaatctgtacaactctatgtatttggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30908" stop="28188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30608" g_stop="30498" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30497" i_stop="30400" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30399" g_stop="30234" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="277" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="408" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28537" g_stop="28488" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="458" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396625" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30608" e_stop="30498"/>
          <exon e_start="30399" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
          <exon e_start="28537" e_stop="28488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATATGTATGTATATCTATCTATCTTCGATTTATTTATTTCATACTTCTTTTACGAAAAATTTAAGTTATATATACTAATAGTTATAATATTCGATATTTTTGCATTATCAACTTGTACAAAATGATTGCTTATTCAATTTACTAATGCAGGCTAGACATGTTAGAAGTTATTATTTCTGTTTTAATTTATTTGTCTTTTTTTTTTTTCAGTCTATTTTAATTTTCTTTAAAAACCACAAAACTAAATAATATGTTGGTACATTCAACGTATCACCAAAAAATTCAAAAGTTTTTCTTTTACTTTCTTAACTCTGTACAAAATTAAGACTAGATAAACAAACTGAAACAAAAAGACTGTAATGATATAAAATGTAAAAATTTTAATTTCTTTGCTCTTCGTTTTCTCTATTATTAAATGTAAATTTTTTTTTAGCAAATTGGTTTTTTTCTCAGGGTAGCAAGGTTGTATACATGTTTATGGAAATGAAGAAAATAAAATCCAAAGACGATAAGTTCAAATATAGGAAGATAATAAGAAGCATATTGACAATGACTAATTACTAATTTTGACGTGTTTTCCCTCTATTATAAAGTTTTAATTTCAATTATTTTGTTTTTCATCCTAGAAAAGTCATGTGTTCCTCGATATTTTTAGTAATAATTTTCGTGGTCCTATTTAAAATTCTAAGAAAAAACAGTACTAATATACATTGCATCTTGACATATATAATTTTTTTGTTGTTACAATTTTTTTTATCTAATTCTTTTCCATATGACTTTTTAATTCCATTTTGAATTGTTTTACATGCATTGTTAATTTTTATGAAATTATCTCTATATTGCGTAATACACTATTTTTTTTCTTCAAAATTTATTTTATGAGATTATATAAAATAAATATGTTATTATTGTTATGATACAGAGGTCTACATGGATTTGGTTTTAATATGGTTTCAATTCAACCACAATAACACTACTAGAAAGTCACTTTCTTTTTATTGTCTCTACTCTCCAGTTATATTACTCAAAAAATTTATCTGTATTGAGTGTTTGTATCAAATTAATGTAATTTTCATTATGATATAATTTAATGAAGTAAAACACATATTTAGTAATTATGACATGAATAAACTAACAAAAGTTATAATATTTTTGACATTTTTTCATTAATTTTGGTGAGGAAGGCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCC</genome_strand>
        <mrna_strand>CTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAG..................................................................................................AAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGGGAAAATCTGTAATGCAATCTGTACAACTCTATGTATTTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396821" ref_strand="+" ref_description="SGN-E396821 [TUS-44-E10]">
      <seq>tttttttttataaacttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaaggtaattaataatttttctatatatttcgatccattttatttgctatattattactatataatattcttttgatgaaattaaattatttttttctaaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgtgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgccaaaggcacctaaaaataatatttgcaaagttattgaaaaacacatttggctgatactccatatgccttttggggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30922" stop="29412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30622" g_stop="30234" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="523" r_length="134" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396821" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30622" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGC-AAGTTATTGAAGAACACA-TTGGCTGATACT-CATAT</genome_strand>
        <mrna_strand>TTTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCCAAAGGCACCTAAAAATAATATTTGCAAAGTTATTGAAAAACACATTTGGCTGATACTCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240286" ref_strand="+" ref_description="SGN-E240286 [cLED-25-L22]">
      <seq>ttttttttataaacttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaaggtgattaataatttttctatatatttcgatccattttatttgctatattattactatataatattcttttgatgaaattaaattatttttttctaaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacggtcaggtaccttgcgaggatatagcaaaattagttggtgaagacagaaaatatgatttattggtgatgggtttgcaagaggcacctagaaataatatttgcaagttattgaagaacacattggctgatactcatatgcttttgggaaaatctggaatgcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30921" stop="29414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30621" g_stop="30234" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29848" g_stop="29718" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="519" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E240286" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30621" e_stop="30234"/>
          <exon e_start="29848" e_stop="29718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAGGTACGTCCACTTTTACTTGTCCACTTAAAATAGGTTACGAACATTTTTTTCACTAAGTAGCTCATTTACTATAACAAAAATATCACTAACGGTATTTAATTCTTAATTGCCACTAAATATGTATTTTTAGCGGCAATTGTCAATCTTTATATATGTCCCTAAAGCCTTTAGCGACATTGATTCTAACGATACTTAACTTATGCTGGTAAAGATATTATTACTCTTTATTAGTGTTAATATTTAATGCCGCTAAAAATTATTTTTATCATAATAATTGCTAATAATGAGATTGAATTAGCCACGAATATTATTATATAGTAGATCATAGAAATTAATTATCTATCGCTAATTTACGGGTATATTATTTTTTGTATACAATGTGAAGGTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT</genome_strand>
        <mrna_strand>TTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTGATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGCGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396854" ref_strand="+" ref_description="SGN-E396854 [TUS-44-I10]">
      <seq>tttttttttataaacttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaaggtaattaataatttttctatatatttcgatccattttatttgctatattattactatataatattcttttgatgaaattaaattatttttttctaaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactattgatatccaaaaacgttgtgaattctctggaacttctcatctttgcatctatttcgtcacttggaatatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30922" stop="29939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30622" g_stop="30239" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30622" e_stop="30239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACG</genome_strand>
        <mrna_strand>TTTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396837" ref_strand="+" ref_description="SGN-E396837 [TUS-44-G10]">
      <seq>tttttttttataaacttgtgcttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggagggattatgtgtaaagctttttgaagcatcaaggtaattaataatttttctatatatttcgatccattttatttgctatattattactatataatattcttttgatgaaattaaattatttttttctaaagaaagtacaaaatgaagagacataaagctgaagcaataggaatggtagtagatagttttgaggcaagtcatgaagggatcaaaactatttatatccaaaaacgttgtgaattctctggagcttggcggcgttgcaactatttcgtcacctggaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30922" stop="29943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30622" g_stop="30243" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E396837" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30622" e_stop="30243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATG</genome_strand>
        <mrna_strand>TTTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTTATATCCAAAAACGTTGTGAATTCTCTGGAGCTTGGCGGCGTTGCAACTATTTCGTCACCTGGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393471" ref_strand="+" ref_description="SGN-E393471 [TUS-38-G10]">
      <seq>cttctgtttcccattcaagaacactagtgatactcaatattcaagaaattaaaacaacatttttttcttctcaatggaccgattatgtgtaaagctttttgaagcatcaagaaagtacaaaatgaagacacataaagctgaagcaataggaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="30908" stop="30056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30608" g_stop="30498" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30497" i_stop="30400" i_length="98">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30399" g_stop="30355" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="156" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E393471" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30608" e_stop="30498"/>
          <exon e_start="30399" e_stop="30355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGT</genome_strand>
        <mrna_strand>CTTCTGTTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGACCGATTATGTGTAAAGCTTTTTGAAGCATCAAG..................................................................................................AAAGTACAAAATGAAGACACATAAAGCTGAAGCAATAGGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327744" ref_strand="+" ref_description="SGN-E327744 [cTOC-20-K6]">
      <seq>taaaacaggacggggagtactatgctatgtagtagttcacacatcatttgcttccattttttccggcgtaacagatttaccaaattcatccgcctgaaacaaaggtggagctgcaaaaatcttcaaaaagagctttatttggacctttgaggcatgacattttttacaatctctttacaaaaaaatgagtgtaatggtacgtcatgtgcttctttcatagtaactgtgtaatgtgataaaatgaaccatttaatttgctttctttcattgttctcactgatgtgtgcttctttcgacattttctgacgataattagtcccctagttttcaatttatgtgctacagtgcttgacagagtaaagtactgcatttaccttttgagttaatttactataatttctggcccaattatagtggtcaacatcaaccactcggcctcgattgcatgatgacgttgtgcaatgggaaaaataattgcaatggctaaatggtgatgtgaaagatcagccatcccttaaatctgtgtttgtgatgaaatcctctcccagaagaagtcgaatggccattcccgccccttgagcattaccaagtaaatgactactttaatcgtagacattgatcataattggttaaaaatggccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="33948" stop="37585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34248" g_stop="34351" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34352" i_stop="36744" i_length="2393">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36745" g_stop="37285" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="644" r_length="540" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E327744" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34248" e_stop="34351"/>
          <exon e_start="36745" e_stop="37285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACAGGACGGGGAGTACTATGCTATGTAGTAGTTCACACATCATTTGCTTCCATTTTTTCCGGCGTAACAGATTTACCAAATTCATCCGCCTGAAACAAAGGTATTCTTCTTCTTCTATCTACTGATTTAGCCCTAAATTGCGGTTGAGCATGAAAATTGTATATCTTTTTCTTGCCCCATTGTGTTGAAGTTCCATTTTAGGTTAATTTTGGTGTGATTTGAATCATTGATAGAGTCTATAAAACAAAGGTGTGTTTTGTCGGTGATGTTTTTTTGAGTTTTTATTTGTCGGTAATTTTGTTTTCTAGGTTATTAGCCCTATAAAGTTTGTGTTTTTTGGGGATATTGATGTGTTTTGTAAGACATTGTTGAAAGTTTATATGATTCTAGTGGGGTTTTTTCAGGATTAATGATGGTTAATTAGAGGGTTGTAGCTTCTGATGTATAACTTGTTTGTGATCCACGACCATTTGTTCTGCCATTGCTCTATGTGAAGTGATTTAGGTGAGTCATAAGCAGATGTCTAAGTGCTACTCTTTTCTTTTCATTGACTAATTGCTACTGATTTAGTGTCACTCGGAAGCAGCGAGTTGCTTCATTTGCCTTTTTATCTTGCTGATTTGTTGTCATAATATTCCTGCAATCCTGCTTCAATTACATTTTTTTGAACTGGAGGTTTGTGGAAAACAACTTCTCTAGACTTACAAGGATAAGGGTAAGGTATAGTACATCTTACCTTCACAGATTCGACTTGTGGTATTACAGTGGGTATGATAAATTGAGTGGCACAATGTACTGGAAGTATATTAGTTTCAAAATGAAATGATTCATGTGAAGATTGTGCTTCAATTAGTAGATAACAAGCACAGCACGTATTACAACTGAATGAAGATAATTTTTAAGGCGTTTGTTTTTCTATATTTCCTTTTGGAATCTTGAGAATTTTTTTTGCAAAAATGTGTTTCTTTGGAATCTTCTGAAAAGCTATTACTTTGATGAAGTGTTTTTAGGGTGTTCTTCAACTCATAAATCTTCAAAAACCAACTATCCAAAAACATTTTAGTTTTTGCATGTTTTCAAAAATCATCCAAACAAACCTTATAAAAAAATGTTATCCGAACAACTCCTATAAATTTATGTAATGATAACATTAGCCAATTGGTGAAATTAGCAATTAGGGCATCAAATCAACATTTGATGTGTTTGCATCTATTGATGGATGAATTCAATATACTAATGGATTCTAACTCCGCATTTTTAGAAGATACAACTTCTGTGGTGAAGGAATAAGCAGTTCTTTTGGATTATAGTAAGGATATATGGCTTGAATGTTTATGTGAAGCGAATGTATACCTTCTGTTTACTATATGGATGCTAAATCTGTTTACTATATGGATGCTAAAAAATTCTGCTAGTTTGTAAAACATGATGAGGACTATGGGAAAAAACTTGTTTTGATCCACACTCATTTCTTCTGCCACTGCTCTCTGTAAAGTGATTTAGGTGCGCCACTTTGTTATCCATGTTATAAGCATCTGTCTAGGTGTGTTCCTGGGATAAGCAGAAGTTTTTGCTTATTGACTAACTACCACTGATTGATGGTAAATACTTACCCACATCGGGTGTTATGCTTAAATAAACAGTTAACCTTAAGAATTAGCAAATTTAAGTGAAAATGCATTTCACTTAACCGTGTTTAAGTGTTACACAGTGTATATGCAAGATATGTGTGGATATTCATTTTATTGGTGTAAGCACCTATTCAGGGTTAAGATTTTACCTGATTTAGTGCCTCTCGGAAGCTTTTGACTGCGATTTATGTTAGGGATTGTCCATAAATGTTGATCAATTGAGTGTAACAGTGGAATTTAAAGTACTTAAGTGTCAAAATCAAATGATTCACTTTAAGACCGTGCCTCAATTAGTAGAAAAACAAGCATAACACACCTATTACTACTAAATAAAGAAATATCTAAGGTGTTTGTTCTGAAAGTTTCTTTGAGATCTTGGAAGAAATTTTGCGAAATGTGTTTCTTTTGGAGTCTTCAGAAAAGCTATTTCTTGAGCAAGTTATTTAGGGTGATCTCCATTCACAAATCTTCAAAACCAACTATCCAAACACATTTTCTGTTTTCATGGTTTTAAAGAATTTCTTTTTAGACAACTTCTTTCAAAAGTTATCCGTTCAACTCTTATATGACTCTGTGATGAATACATTAGCTAATTGTTGAAGTTTGGACCATCTGTTTTCAAACCACATTTAAAGTGTTTGCTTCTGATGATGGGTGAGTTCAACATATTAACAAATTTTACACAACATTTTTAGACCATACGAGTTTGTTGGTGAAGGAGTGAGCAGTTCTTACGGATAATATTGAAGAGCACAGTTGAATGATATGCAAAGCGGCGGTGTGTCTTCCGTTACTCTATGGATGCTAAAAAGTTTTTCTACTTGGTAGCTTATTGTACATTTTTCCCTTTTATATGAATCAGGTGGAGCTGCAAAAATCTTCAAAAAGAGCTTTATTTGGACCTTTGAGGCATGACATTTTTTACAATCTCTTTACAAAAAAATGAGTGTAATGGTACGTCATGTGCTTCTTTCATAGTAACTGTGTAATGTGATAAAATGAACCATTTAATTTGCTTTCTTTCATTGTTCTCACTGATGTGTGCTTCTTTCGACATTTTCTGACGATAATTAGTCCCCTAGTTTTCAATTTATGTGCTACAGTGCTTGACAGAGTAAAGTACTGCATTTACCTTTTGAGTTAATTTACTATAATTTCTGGCCCAATTATAGTGGTCAACATCAACCACTCGGCCTCGATTGCATGATGACGTTGTGCAATGGGAAAAATAATTGCAATGGCTAAATGGTGATGTGAAAGATCAGCCATCCCTTAAATCTGTGTTTGTGATGAAATCCTCTCCCAGAAGAGTTCGAATGGCCATTCCCGCCCCTTGAGCATTACCAAGTAAATGACTACTTTAATCGTAGACATTGATCATAATTGGTTAAAAATTGGCCAGC</genome_strand>
        <mrna_strand>TAAAACAGGACGGGGAGTACTATGCTATGTAGTAGTTCACACATCATTTGCTTCCATTTTTTCCGGCGTAACAGATTTACCAAATTCATCCGCCTGAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTGCAAAAATCTTCAAAAAGAGCTTTATTTGGACCTTTGAGGCATGACATTTTTTACAATCTCTTTACAAAAAAATGAGTGTAATGGTACGTCATGTGCTTCTTTCATAGTAACTGTGTAATGTGATAAAATGAACCATTTAATTTGCTTTCTTTCATTGTTCTCACTGATGTGTGCTTCTTTCGACATTTTCTGACGATAATTAGTCCCCTAGTTTTCAATTTATGTGCTACAGTGCTTGACAGAGTAAAGTACTGCATTTACCTTTTGAGTTAATTTACTATAATTTCTGGCCCAATTATAGTGGTCAACATCAACCACTCGGCCTCGATTGCATGATGACGTTGTGCAATGGGAAAAATAATTGCAATGGCTAAATGGTGATGTGAAAGATCAGCCATCCCTTAAATCTGTGTTTGTGATGAAATCCTCTCCCAGAAGAAGTCGAATGGCCATTCCCGCCCCTTGAGCATTACCAAGTAAATGACTACTTTAATCGTAGACATTGATCATAATTGGTTAAAAA-TGGCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348778" ref_strand="+" ref_description="SGN-E348778 [cTOF-29-E18]">
      <seq>cggggagtactatgctatgtagtagttcacacatcatttgcttccattttttccggcgtaacagatttaccaaattcatccgcctgaaacaaaggattaatgatggttaattagagggttgtagcttctgatgtataacttgtttgtgatccacgaccatttgttctgccattgctctatgtgaagtgatttagaccatacgagtttgttgggaaggagtgagcagttcttacggataatattgaagagcacagttgaatgatatgcaaagcggcggtggagctgcaaaaatcttcaaaaagagctttatttggacctttgaggcatgacattttttacaatctctttacaaaaaaaatgagtgtaatgaagcaacatataccatccaatttcctttgcaatgcagaacttgaggtggacgatatcagcaacttaccagcccagattgtcgacaagattctgtctcatttgtcacttagggatgctgtgaggacaagtgtcttgtcaagtaaatggagaaacaaatgggttactcttccaaaccttgtatttgacaatcaatctctttttgatctcatcccaagaccaaaccttcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="33958" stop="38064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34258" g_stop="34351" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34352" i_stop="34655" i_length="304">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34656" g_stop="34755" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="194" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34756" i_stop="36577" i_length="1822">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.634" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36578" g_stop="36660" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="276" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36661" i_stop="36744" i_length="84">
            <donor d_prob="0.269" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36745" g_stop="36836" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="369" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36837" i_stop="37532" i_length="696">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37533" g_stop="37764" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="602" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E348778" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34258" e_stop="34351"/>
          <exon e_start="34656" e_stop="34755"/>
          <exon e_start="36578" e_stop="36660"/>
          <exon e_start="36745" e_stop="36836"/>
          <exon e_start="37533" e_stop="37764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGAGTACTATGCTATGTAGTAGTTCACACATCATTTGCTTCCATTTTTTCCGGCGTAACAGATTTACCAAATTCATCCGCCTGAAACAAAGGTATTCTTCTTCTTCTATCTACTGATTTAGCCCTAAATTGCGGTTGAGCATGAAAATTGTATATCTTTTTCTTGCCCCATTGTGTTGAAGTTCCATTTTAGGTTAATTTTGGTGTGATTTGAATCATTGATAGAGTCTATAAAACAAAGGTGTGTTTTGTCGGTGATGTTTTTTTGAGTTTTTATTTGTCGGTAATTTTGTTTTCTAGGTTATTAGCCCTATAAAGTTTGTGTTTTTTGGGGATATTGATGTGTTTTGTAAGACATTGTTGAAAGTTTATATGATTCTAGTGGGGTTTTTTCAGGATTAATGATGGTTAATTAGAGGGTTGTAGCTTCTGATGTATAACTTGTTTGTGATCCACGACCATTTGTTCTGCCATTGCTCTATGTGAAGTGATTTAGGTGAGTCATAAGCAGATGTCTAAGTGCTACTCTTTTCTTTTCATTGACTAATTGCTACTGATTTAGTGTCACTCGGAAGCAGCGAGTTGCTTCATTTGCCTTTTTATCTTGCTGATTTGTTGTCATAATATTCCTGCAATCCTGCTTCAATTACATTTTTTTGAACTGGAGGTTTGTGGAAAACAACTTCTCTAGACTTACAAGGATAAGGGTAAGGTATAGTACATCTTACCTTCACAGATTCGACTTGTGGTATTACAGTGGGTATGATAAATTGAGTGGCACAATGTACTGGAAGTATATTAGTTTCAAAATGAAATGATTCATGTGAAGATTGTGCTTCAATTAGTAGATAACAAGCACAGCACGTATTACAACTGAATGAAGATAATTTTTAAGGCGTTTGTTTTTCTATATTTCCTTTTGGAATCTTGAGAATTTTTTTTGCAAAAATGTGTTTCTTTGGAATCTTCTGAAAAGCTATTACTTTGATGAAGTGTTTTTAGGGTGTTCTTCAACTCATAAATCTTCAAAAACCAACTATCCAAAAACATTTTAGTTTTTGCATGTTTTCAAAAATCATCCAAACAAACCTTATAAAAAAATGTTATCCGAACAACTCCTATAAATTTATGTAATGATAACATTAGCCAATTGGTGAAATTAGCAATTAGGGCATCAAATCAACATTTGATGTGTTTGCATCTATTGATGGATGAATTCAATATACTAATGGATTCTAACTCCGCATTTTTAGAAGATACAACTTCTGTGGTGAAGGAATAAGCAGTTCTTTTGGATTATAGTAAGGATATATGGCTTGAATGTTTATGTGAAGCGAATGTATACCTTCTGTTTACTATATGGATGCTAAATCTGTTTACTATATGGATGCTAAAAAATTCTGCTAGTTTGTAAAACATGATGAGGACTATGGGAAAAAACTTGTTTTGATCCACACTCATTTCTTCTGCCACTGCTCTCTGTAAAGTGATTTAGGTGCGCCACTTTGTTATCCATGTTATAAGCATCTGTCTAGGTGTGTTCCTGGGATAAGCAGAAGTTTTTGCTTATTGACTAACTACCACTGATTGATGGTAAATACTTACCCACATCGGGTGTTATGCTTAAATAAACAGTTAACCTTAAGAATTAGCAAATTTAAGTGAAAATGCATTTCACTTAACCGTGTTTAAGTGTTACACAGTGTATATGCAAGATATGTGTGGATATTCATTTTATTGGTGTAAGCACCTATTCAGGGTTAAGATTTTACCTGATTTAGTGCCTCTCGGAAGCTTTTGACTGCGATTTATGTTAGGGATTGTCCATAAATGTTGATCAATTGAGTGTAACAGTGGAATTTAAAGTACTTAAGTGTCAAAATCAAATGATTCACTTTAAGACCGTGCCTCAATTAGTAGAAAAACAAGCATAACACACCTATTACTACTAAATAAAGAAATATCTAAGGTGTTTGTTCTGAAAGTTTCTTTGAGATCTTGGAAGAAATTTTGCGAAATGTGTTTCTTTTGGAGTCTTCAGAAAAGCTATTTCTTGAGCAAGTTATTTAGGGTGATCTCCATTCACAAATCTTCAAAACCAACTATCCAAACACATTTTCTGTTTTCATGGTTTTAAAGAATTTCTTTTTAGACAACTTCTTTCAAAAGTTATCCGTTCAACTCTTATATGACTCTGTGATGAATACATTAGCTAATTGTTGAAGTTTGGACCATCTGTTTTCAAACCACATTTAAAGTGTTTGCTTCTGATGATGGGTGAGTTCAACATATTAACAAATTTTACACAACATTTTTAGACCATACGAGTTTGTTGGTGAAGGAGTGAGCAGTTCTTACGGATAATATTGAAGAGCACAGTTGAATGATATGCAAAGCGGCGGTGTGTCTTCCGTTACTCTATGGATGCTAAAAAGTTTTTCTACTTGGTAGCTTATTGTACATTTTTCCCTTTTATATGAATCAGGTGGAGCTGCAAAAATCTTCAAAAAGAGCTTTATTTGGACCTTTGAGGCATGACATTTTTTACAATCTCTTTAC-AAAAAAATGAGTGTAATGGTACGTCATGTGCTTCTTTCATAGTAACTGTGTAATGTGATAAAATGAACCATTTAATTTGCTTTCTTTCATTGTTCTCACTGATGTGTGCTTCTTTCGACATTTTCTGACGATAATTAGTCCCCTAGTTTTCAATTTATGTGCTACAGTGCTTGACAGAGTAAAGTACTGCATTTACCTTTTGAGTTAATTTACTATAATTTCTGGCCCAATTATAGTGGTCAACATCAACCACTCGGCCTCGATTGCATGATGACGTTGTGCAATGGGAAAAATAATTGCAATGGCTAAATGGTGATGTGAAAGATCAGCCATCCCTTAAATCTGTGTTTGTGATGAAATCCTCTCCCAGAAGAGTTCGAATGGCCATTCCCGCCCCTTGAGCATTACCAAGTAAATGACTACTTTAATCGTAGACATTGATCATAATTGGTTAAAAATTGGCCAGCATATCTGTAACTATTCTCTTGAGACAAATTATAGTAGCATCATTTTGAAGAAAAACAGAACTCTGAGTGCTCTTATCCTATGCCGTTCTTTTTCAGTAAACCACAATGATAATTTCTCTCTCTTGGGTTGTCATATTGACATCTTTGCATTTTTGTAAGCACTCTTGTATGCAGGTATGTATGTTATAAACTAAAAATACACATTTTTCTCATTTGGATGAATGTCTTCTTCTTTGTTACTATGCAGAAGCAACATATACCATCCAATTTCCTTTGCAATGCAGAACTTGAGGTGGACGATATCAGCAACTTACCAGCCCAGATTGTCGACAAGATTCTGTCTCATTTGTCACTTAGGGATGCTGTGAGGACAAGTGTCTTGTCAAGTAAATGGAGAAACAAATGGGTTACTCTTCCAAACCTTGTATTTGACAATCAATCTC-TTTTGATCTCATCCCAAGACCAAACCTTCATAAAAA</genome_strand>
        <mrna_strand>CGGGGAGTACTATGCTATGTAGTAGTTCACACATCATTTGCTTCCATTTTTTCCGGCGTAACAGATTTACCAAATTCATCCGCCTGAAACAAAG................................................................................................................................................................................................................................................................................................................GATTAATGATGGTTAATTAGAGGGTTGTAGCTTCTGATGTATAACTTGTTTGTGATCCACGACCATTTGTTCTGCCATTGCTCTATGTGAAGTGATTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATACGAGTTTGTTGG-GAAGGAGTGAGCAGTTCTTACGGATAATATTGAAGAGCACAGTTGAATGATATGCAAAGCGGCG....................................................................................GTGGAGCTGCAAAAATCTTCAAAAAGAGCTTTATTTGGACCTTTGAGGCATGACATTTTTTACAATCTCTTTACAAAAAAAATGAGTGTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACATATACCATCCAATTTCCTTTGCAATGCAGAACTTGAGGTGGACGATATCAGCAACTTACCAGCCCAGATTGTCGACAAGATTCTGTCTCATTTGTCACTTAGGGATGCTGTGAGGACAAGTGTCTTGTCAAGTAAATGGAGAAACAAATGGGTTACTCTTCCAAACCTTGTATTTGACAATCAATCTCTTTTTGATCTCATCCCAAGACCAAACCTTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700349" ref_strand="+" ref_description="SGN-E700349 [FA12DE05]">
      <seq>gccagatagagagagtcgaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtacaaagatttggtggtttattgacccaaattggggagaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcgaattgcttctttgtgaaatttttgtattagtccctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40046" stop="43051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40341" g_stop="40708" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="655" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="693" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42751" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="830" r_length="137" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E700349" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40341" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGATAGATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTAC</genome_strand>
        <mrna_strand>GCCAGATAG--AGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTACAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAAATTGGGGAGAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCGAATTGCTTCTTTGTGAAATTTTTGTATTAGTCCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269857" ref_strand="+" ref_description="SGN-E269857 [cLEM-17-D3]">
      <seq>gatagatagatagagagtccaaaatggcgatttccgtggcttctcttgcttcatcttttgcttccctttcattttcttctcagatctctcaaaaaccctatgctgtatcccttgctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccacagagaatcttttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40041" stop="40875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40341" g_stop="40575" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E269857" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40341" e_stop="40575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGATAGATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCT</genome_strand>
        <mrna_strand>GATAGATAGATAGAGAGTCCAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATCTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCACAGAGAATCTTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723735" ref_strand="+" ref_description="SGN-E723735 [FC21CD01]">
      <seq>aatcggccgaattgagacagttagatagagagagtcgaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattggggaaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40046" stop="43040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40350" g_stop="40708" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="385" r_length="359" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="674" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="712" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42740" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="839" r_length="127" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E723735" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40350" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGG-AAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTA</genome_strand>
        <mrna_strand>AGAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGAAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732847" ref_strand="+" ref_description="SGN-E732847 [LB03BC03]">
      <seq>cagtgagtcgaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattggggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgtattagtccctactcagaattacaaattgttctgttgatggtattttttgagtttagtttcttggtcaatgtttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40052" stop="43119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40351" g_stop="40708" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="647" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="685" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42813" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="884" r_length="199" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="886" polyA_stop="895"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E732847" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40351" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTA</genome_strand>
        <mrna_strand>CAGTGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTATTAGTCCCTACTCAGAATTACAAATTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGGTCAATGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733782" ref_strand="+" ref_description="SGN-E733782 [LB10DG03]">
      <seq>agagagtcgaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattggggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgtattagtccctactcagaaatacaatttgttctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40052" stop="43075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40352" g_stop="40708" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="646" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="684" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42775" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="845" r_length="161" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E733782" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40352" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTG</genome_strand>
        <mrna_strand>AGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTATTAGTCCCTACTCAGAAATACAATTTGTTCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733581" ref_strand="+" ref_description="SGN-E733581 [LB10BF03]">
      <seq>agtgagtcgaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattggggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgtattagtccctactcagaattacaatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40052" stop="43069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40352" g_stop="40708" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="646" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="684" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42769" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="839" r_length="155" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E733581" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40352" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTT</genome_strand>
        <mrna_strand>AGTGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTATTAGTCCCTACTCAGAATTACAATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728282" ref_strand="+" ref_description="SGN-E728282 [LA17BC03]">
      <seq>acacagtccaaaatggcgatttccgtggcttctctcgcttcatcgttttgcttctcttgcattttcttctcagatttctcaaaaacccgatgctgtatccctttctcattcaaagcaattcatctttctctcgtcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcgtatgaagcttgagaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtacacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctgaaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttggcaaggtggaaggcggtggactttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttattgagagccatagaaaaccattgagggaggagggtctgtttactagagatgcctcagttgttgagcggaagaaagttggtctcaagaaggctcgctagcatccactattttgcaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatctggaggtttattgacacagattgtggaagaaagagcatatcaatgatctgttttgactgatgaagatgacaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40052" stop="42994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40352" g_stop="40708" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="649" r_length="289" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="687" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42694" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="765" r_length="78" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E728282" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40352" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATC-TTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTC-TCTTTCTCTC-TCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATTG-GGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAAT</genome_strand>
        <mrna_strand>ACACAGTCCAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCGTTTTGCTTCTCTTGCATTTTCTTCTCAGATTTCTCAAAAACCCGATGCTGTATCCCTTTCTCATTCAAAGCAATTCATCTTTCTCTCGTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCGTATGAAGCTTGAGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTACACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGAAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGGCAAGGTGGAAGGCGGTGGACTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTATTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTTACTAGAGATGCCTCAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCTAGCATCCACTATTTTGCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATCTGGAGGTTTATTGACACAGATTGTGGAAGAAAGAGCATATCAATGATCTGTTTTGACTGATGAAGATGACAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216985" ref_strand="-" ref_description="SGN-E216985 [cLEL-1-P17](-)">
      <seq>gttaccagaaatggcgatttccgtggcttctcttgcttcattttttgcttccctttcattttcttctcagatttctcaaaaaccctatgctgtatcccttgctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcacagcctatttttggaactggtagacgtaaaagtgctagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattatggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40059" stop="42456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40353" g_stop="40708" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42156" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="452" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E216985" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216985" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40353" e_stop="40708"/>
          <exon e_start="42060" e_stop="42156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGG</genome_strand>
        <mrna_strand>GTTA-CCAGAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATTTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735965" ref_strand="+" ref_description="SGN-E735965 [LC03DD11]">
      <seq>cgttcgaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattgggggaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgtattaatccctactcaaaattacaatttgttctgttggatgggattttttgagtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40058" stop="43094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40355" g_stop="40708" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="643" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="681" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42794" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="862" r_length="181" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="863" polyA_stop="876"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E735965" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40355" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTT-GATGGTATTTTTTGAGTTTA</genome_strand>
        <mrna_strand>CGTTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGGAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTATTAATCCCTACTCAAAATTACAATTTGTTCTGTTGGATGGGATTTTTTGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320263" ref_strand="+" ref_description="SGN-E320263 [cTOB-21-F7]">
      <seq>agtcggaaaatggcgatttccgtggcttctcttgcttcatcttttgcttccctttcattttcttctcagatttctcaaaaaccctatgctgtatcccttgctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcacagcctatttttggaactggtagacgtaaaagtgctagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgggatgcgaaggaatatcttcaaggaaatccattatggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggtctttctgggcaggctcaagcaatttcgcttggcattgctcgtgcactcctaaaggttagtgagagccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40056" stop="42536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40356" g_stop="40708" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42236" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="531" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E320263" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40356" e_stop="40708"/>
          <exon e_start="42060" e_stop="42236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTC-GAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCAT</genome_strand>
        <mrna_strand>AGTCGGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGGGATGCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCGCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737662" ref_strand="+" ref_description="SGN-E737662 [LC10DB01]">
      <seq>gtcgaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattggggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgtattagtccctactcagaattacaatttgttctgttgatgggattttttgagtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40057" stop="43094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40357" g_stop="40708" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="641" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="679" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42794" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="859" r_length="180" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="860" polyA_stop="873"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E737662" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40357" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTA</genome_strand>
        <mrna_strand>GTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGGATTTTTTGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740572" ref_strand="+" ref_description="SGN-E740572 [LC22AB05]">
      <seq>gtctaaaatggcgatttccgtggcttctctcgcttcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatccctttctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcgcagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattggggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgtattagtccctactcagaattacaatttgttctgttgatggtattttttgagtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40057" stop="43094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40357" g_stop="40708" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="641" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="679" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42794" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="859" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="860" polyA_stop="873"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E740572" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40357" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTA</genome_strand>
        <mrna_strand>GTCTAAAATGGCGATTTCCGTGGCTTCTCTCGCTTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTTCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCGCAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247590" ref_strand="+" ref_description="SGN-E247590 [cLEF-42-L1]">
      <seq>cgaaaatggcgatttccgtggcttctcttgcttcatcttttgcttccctttcattttcttctcagatttctcaaaaaccctatgctgtatcccttgctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcacagcctatttttggaactggtagacgtaaaagtgctagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattatggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggtctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40059" stop="42546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40359" g_stop="40708" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42246" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="537" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E247590" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40359" e_stop="40708"/>
          <exon e_start="42060" e_stop="42246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCAT</genome_strand>
        <mrna_strand>CGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209501" ref_strand="+" ref_description="SGN-E209501 [cLEC-54-K22]">
      <seq>cgaaaatggcgatttccgtggcttctcttgcttcatcttttgcttccctttcattttcttctcagatttctcaaaaaccctatgctgtatcccttgctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcacagcctatttttggaactggtagacgtaaaagtgctagtgctcgtgttgttcttcaagaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattatggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggtctttctgggcaggctcaagcaatttcccttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40059" stop="42501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40359" g_stop="40708" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42201" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="492" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E209501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40359" e_stop="40708"/>
          <exon e_start="42060" e_stop="42201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCA</genome_strand>
        <mrna_strand>CGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAAGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321104" ref_strand="+" ref_description="SGN-E321104 [cTOB-13-O7]">
      <seq>gaaaatggcgatttccgtggcttctcttgcttcatcttttgcttccctttcattttcttctcagatttctcaaaaaccctatgctgtatcccttgctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcacagcctatttttggaactggtagacgtaaaagtgctagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattatggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggtctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40060" stop="42545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40360" g_stop="40708" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42245" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="535" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E321104" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40360" e_stop="40708"/>
          <exon e_start="42060" e_stop="42245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCA</genome_strand>
        <mrna_strand>GAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714674" ref_strand="+" ref_description="SGN-E714674 [FB12AE03]">
      <seq>caaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggcctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattggggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttcagatttatcatcactcaaattgcttctttgtgaaatttttgtattagtccctactcagaattacaatttgttctgttgatggtattttttgagtttagtttcttgttcaatgtttaatatagttctggagatttttgtgcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="41798" stop="43150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42098" g_stop="42348" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="289" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42618" g_stop="42851" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="526" r_length="237" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E714674" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42098" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATTG-GGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTC-AATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAAGGAAC</genome_strand>
        <mrna_strand>CAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGCCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCAGATTTATCATCACTCAAATTGCTTCTTTGTGAAATTTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAGTTCTGGAGATTTTTGTGCCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284497" ref_strand="+" ref_description="SGN-E284497 [cLER-16-P22]">
      <seq>ttgtcaaggtggaaggcggtggtctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagcgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattgggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttctgaattatcatcctcaattgcttctttgtaaaaattttgtattagtccctactcagaattacaatttgttctgttgatggtattttttgagtttagtttcttgttcaatgtttaatataattctggagatttttgtgcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="41845" stop="43150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42145" g_stop="42348" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="242" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42618" g_stop="42850" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="475" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E284497" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42145" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAAGGAA</genome_strand>
        <mrna_strand>TTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279978" ref_strand="+" ref_description="SGN-E279978 [cLEL-7-A21](-)">
      <seq>attgctcgtgcactcctaaaggttagtgagagccatagagaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgatgcagattgggaataaagagcatatcaatgatctgttttgactgttgaagatgagacaatgtttctgcggcacgagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="41901" stop="43001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42201" g_stop="42348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="186" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42618" g_stop="42702" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="271" r_length="85" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E279978" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42201" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGA</genome_strand>
        <mrna_strand>ATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAGAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGATGCAGATTGGGAATAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGACAATGTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216670" ref_strand="+" ref_description="SGN-E216670 [cLEL-1-P17](-)">
      <seq>aggttagtgagagccatagaaaaccattgaggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattgggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttctgaattatcatcctcaattgcttctttgtaaaaattttgtattagtccctactcagaattacaatttgttctgttgatggtattttttcagtttagtttcttgttcaatgcctaatataattctggagatttttgtgcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="41920" stop="43150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42220" g_stop="42348" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="166" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42618" g_stop="42846" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="395" r_length="229" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="406"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E216670" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42220" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAA</genome_strand>
        <mrna_strand>AGGTTAGTGAGAGCCATAGAAAACCATTGA-GGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTCAGTTTAGTTTCTTGTTCAATGCCTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334362" ref_strand="+" ref_description="SGN-E334362 [cTOD-21-L7]">
      <seq>aaaaaaatttatctcttttttggaggggttacttgctttcccctccaaaaaaatcaatattggtgacgaattaaaaaaagagaatgtgcagaatcccattctaattttttttttctaagtttccatttttgtgcaactttgaggtattttgattttttgggttgtcataaatatggatgacatatatggcagtgatgaagactactataatggagaatacgaggatgattatgatcgtgacccggaacccgaatctgatgatgatttatcttgtggcaaagctccttcatgcagggtaataaggaaagaatcccttttagcagcacagaaagaagatctacagagagtagtagacttgctttctctgaaagaacatcatgcacgaacgttgcttattcattatcaatgggatgtcgataaggtctttgcaatttttgttgaaagagggaaagaaagattgtttgtagaagctggtataacactagaggagaaaaatgagaatccttcctccgacccctcaaccgaatatacatgtgaaatttgctttgaggatttccctgatgagcaaacgacgttgatggaatgcaatcataggttttgcaatgattgttggacagagtatttcgtagtaaagataaatgatggtaagagtagacgtgtaacatgcatggctcagaaatgcaaagcgatatgtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="43035" stop="45119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43335" g_stop="43629" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43630" i_stop="44207" i_length="578">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44208" g_stop="44240" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="328" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44241" i_stop="44329" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44330" g_stop="44609" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="608" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44610" i_stop="44727" i_length="118">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44728" g_stop="44819" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="700" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E334362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43335" e_stop="43629"/>
          <exon e_start="44208" e_stop="44240"/>
          <exon e_start="44330" e_stop="44609"/>
          <exon e_start="44728" e_stop="44819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATTTATCTCTTTTTTGGAGGGGTTACTTGCTTTCCCCTCCAAAAAAATCAATATTGGTGACGAATTAAAAAAAGAGAATGTGCAGAATCCCATTCTAATTTTTTTTTTCTAAGTTTCCATTTTTGTGCAACTTTGAGGTATTTTGATTTTTTGGGTTGTCATAAATATGGATGACATATATGGCAGTGATGAAGACTACTATAATGGAGAATACGAGGATGATTATGATCGTGACCCGGAACCCGAATCTGATGATGATTTATCTTGTGGCAAAGCTCCTTCATGCAGGGTATGATATGTTTTTCCTTTTGATCAAAATCAAGTTCTCGGGTTCTACTCTGTTTGTTTCAATTTGTTTGTTTTACTTTTCCTTTTTTAGTCTATTTCAAGAAAATGTTTCTTTCTTTTTTCTTTTGGCAACTTTTGATTCCAACTTGATCACATGAGTTGTTTAAAATCATATGATTAAAAGATATTTTGGTATATTCTACATATCTTTAGTTTAAGATTATACATTTAAAACTCTTTCTTTACTTTTTTATAACTGTGTCAAGTCAAAACCAGATAAAGAAATTGCAACGTAAGGAGTATATTAGTTTTAACTTCAAACTCTTTCCATTTTACCATTGATAGTTGCAAAAGAACTATGATTTAAAGCATAGAAATAAGGTAAGTTCTTTTACACTTCACAAAAAACACTTGTATGACGGCATGAAGAGTCTTGGATGCAAATACTAATTGACGAAAAACGGGGAAAGCAAATTGGCCTTTCAATTATGTGATATTTGGTACTTATATGCTGAAAGTTGTGTGTAGTTTTGTGTCTTTTTAAGTGATGATTTGAGTCCTCATTTTTGGATTTTGTAGGTAATAAAGAAAGAATCCCTTTTAGCAGCACAGGTTAGCTACATTTTGTGTCTCGATTTCTTTGTTTTCAACTTCTTTTATACTAGTGTTAGAGATGTGAATCATTTCAATAAAATTTGTAGAAAGAAGATCTACAGAGAGTAGTAGACTTGCTTTCTCTGAAAGAACATCATGCACGAACGTTGCTTATTCATTATCAATGGGATGTCGATAAGGTCTTTGCAATTTTTGTTGAAAGAGGGAAAGAAAGATTGTTTGTAGAAGCTGGTATAACACTAGAGGAGAAAAATGAGAATCCTTCCTCCGACCCCTCAACCGAATATACATGTGAAATTTGCTTTGAGGATTTCCCTGATGAGCAAACGACGTTGATGGAATGCAATCATAGGTTTTGCAATGATTGTGAGCATCTACTATCCTTCATTTTGATCAAATTTCTTCTTGTTCACGAGTCTTTTCACTCTTACTTACGGATGATATAGCCTAAAAGTTGTTTTTTTTTCTCATTGTCTTTACCTAGGTTGGACAGAGTATTTCGTAGTAAAGATAAATGATGGTAAGAGTAGACGTGTAACATGCATGGCTCAGAAATGCAAAGCGATATGTGATGAA</genome_strand>
        <mrna_strand>AAAAAAATTTATCTCTTTTTTGGAGGGGTTACTTGCTTTCCCCTCCAAAAAAATCAATATTGGTGACGAATTAAAAAAAGAGAATGTGCAGAATCCCATTCTAATTTTTTTTTTCTAAGTTTCCATTTTTGTGCAACTTTGAGGTATTTTGATTTTTTGGGTTGTCATAAATATGGATGACATATATGGCAGTGATGAAGACTACTATAATGGAGAATACGAGGATGATTATGATCGTGACCCGGAACCCGAATCTGATGATGATTTATCTTGTGGCAAAGCTCCTTCATGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAGGAAAGAATCCCTTTTAGCAGCACAG.........................................................................................AAAGAAGATCTACAGAGAGTAGTAGACTTGCTTTCTCTGAAAGAACATCATGCACGAACGTTGCTTATTCATTATCAATGGGATGTCGATAAGGTCTTTGCAATTTTTGTTGAAAGAGGGAAAGAAAGATTGTTTGTAGAAGCTGGTATAACACTAGAGGAGAAAAATGAGAATCCTTCCTCCGACCCCTCAACCGAATATACATGTGAAATTTGCTTTGAGGATTTCCCTGATGAGCAAACGACGTTGATGGAATGCAATCATAGGTTTTGCAATGATT......................................................................................................................GTTGGACAGAGTATTTCGTAGTAAAGATAAATGATGGTAAGAGTAGACGTGTAACATGCATGGCTCAGAAATGCAAAGCGATATGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363613" ref_strand="+" ref_description="SGN-E363613 [cLPP-3-K2]">
      <seq>cttgttcgtgtgttatgtgggacctttggcttaagaagtgcgacgatgaagctcccactgtcaattggttgtcagagaaaaccaagcattgtccaaaatgtcataaaattgtggagaaggatggaggatgcaacctggtacagtgtatatgtggacagccattttgttggctctgtggtgaagctactggatttgaacacacatggaatagtatagcaggtcacacttgtggcagatacaaagaaaatcatttgaaaagtgaggaggattctgtagaggactattggcgtcttactcactattatagtcgttataaggctcatattggttcgttgaagattgaagcatctgaatcgaagcaaaaaatacttgataaagtccatagccttgaatcaaaggagttccagttaaaagatttcagctgggcaatgagtggattttatagactcgccttatcaaggcgagttctcgcctgttcctatccatttgcatactactattttggagctctgtttgcaaatgaaataacaaaagaagaacgcgaaataaaacagaacctttttgaggatcaacagcagcaacttgaaacaaatatcgaaagactttcaatgttcttggaagagccatttggtagctatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="44743" stop="46070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45043" g_stop="45208" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45209" i_stop="45293" i_length="85">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45294" g_stop="45770" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="643" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E363613" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45043" e_stop="45208"/>
          <exon e_start="45294" e_stop="45770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCGTGTGTTATGTGGGACCTTTGGCTTAAGAAGTGCGACGATGAAGCTCCCACTGTCAATTGGTTATCAGAGAAAACTAAGCATTGTCCAAAATGTCATAAAATTGTGGAGAAGGATGGAGGATGCAACCTGGTACAGTGTATATGTGGACAGCCATTTTGGTAAGACTTGTGAATTTGAGTTTTTTTTGTACTTGTAATATGCAGCTTTAGCCGTAAGTTTAAGATTTTGTTTTGTTGTTCGTAGTTGGCTCTGTGGTGAAGCTACTGGATTTGAACACACATGGAATAGTATAGCAGGTCACACTTGTGGCAGATACAAAGAAAATCATTTGAAAAGTGAGGAGGATTCTGTAGAGGACTATTGGCGTCTTACTCACTATTATAGTCGTTATAAGGCTCATATTGGTTCGTTGAAGATTGAAGCATCTGAATCGAAGCAAAAAATACTTGATAAAGTCCATAGCCTTGAATCAAAGGAGTTCCAGTTAAAAGATTTCAGCTGGGCAATGAGTGGATTTTATAGACTCGCCTTATCAAGGCGAGTTCTCGCCTGTTCCTATCCATTTGCATACTACTATTTTGGAGCTCTGTTTGCAAATGAAATAACAAAAGAAGAACGCGAAATAAAACAGAACCTCTTTGAGGATCAACAGCAGCAACTTGAAACAAATATCGAAAGGCTTTCAATGTTCTTGGAAGAGCCATTTGGTAGCTATGCTGA</genome_strand>
        <mrna_strand>CTTGTTCGTGTGTTATGTGGGACCTTTGGCTTAAGAAGTGCGACGATGAAGCTCCCACTGTCAATTGGTTGTCAGAGAAAACCAAGCATTGTCCAAAATGTCATAAAATTGTGGAGAAGGATGGAGGATGCAACCTGGTACAGTGTATATGTGGACAGCCATTTTG.....................................................................................TTGGCTCTGTGGTGAAGCTACTGGATTTGAACACACATGGAATAGTATAGCAGGTCACACTTGTGGCAGATACAAAGAAAATCATTTGAAAAGTGAGGAGGATTCTGTAGAGGACTATTGGCGTCTTACTCACTATTATAGTCGTTATAAGGCTCATATTGGTTCGTTGAAGATTGAAGCATCTGAATCGAAGCAAAAAATACTTGATAAAGTCCATAGCCTTGAATCAAAGGAGTTCCAGTTAAAAGATTTCAGCTGGGCAATGAGTGGATTTTATAGACTCGCCTTATCAAGGCGAGTTCTCGCCTGTTCCTATCCATTTGCATACTACTATTTTGGAGCTCTGTTTGCAAATGAAATAACAAAAGAAGAACGCGAAATAAAACAGAACCTTTTTGAGGATCAACAGCAGCAACTTGAAACAAATATCGAAAGACTTTCAATGTTCTTGGAAGAGCCATTTGGTAGCTATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363020" ref_strand="-" ref_description="SGN-E363020 [cLPP-2-H5]">
      <seq>gaatcaaaggagttccagttaaaagatttcagctgggcaatgagtggattttatagactcgccttatcaaggcgagttctcgcctgttcctatccatttgcatactactattttggagctctgtttgcaaatgaaataacaaaagaagaacgcgaaataaaacagaacctttttgaggatcaacagcagcaacttgaaacaaatatcgaaagactttcaatgttcttggaagagccatttggtagctatgctgaagataagcttgttgagacaagaatgaagattattactctctccacagtaactgatgacctctgcaaaaacttgtacgagtgcattgacaacgatttgctagttcctctacaacaagcaactcatacaatagttcgttatagatccaatggtgtggaaaaagcatcagaactataggtaggtacagatatactatgtaatgcttctttactattgagcgcgactgcaggttgcattgaacgttgatcatttgaatcgcgttgttctggcttgatgcttccaacttcttgttaaaacattatcaatcaattcaattgtattcttcttaaaaaaaaaaaaaaaaaaaactgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="45217" stop="46477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45517" g_stop="45842" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45843" i_stop="45918" i_length="76">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45919" g_stop="46163" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="568" r_length="242" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="600"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E363020" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363020" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45517" e_stop="45842"/>
          <exon e_start="45919" e_stop="46163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAAAGGAGTTCCAGTTAAAAGATTTCAGCTGGGCAATGAGTGGATTTTATAGACTCGCCTTATCAAGGCGAGTTCTCGCCTGTTCCTATCCATTTGCATACTACTATTTTGGAGCTCTGTTTGCAAATGAAATAACAAAAGAAGAACGCGAAATAAAACAGAACCTCTTTGAGGATCAACAGCAGCAACTTGAAACAAATATCGAAAGGCTTTCAATGTTCTTGGAAGAGCCATTTGGTAGCTATGCTGAAGATAAGCTTGTTGAGACAAGAATGAAGATTATTACTCTCTCCACAGTAACTGATGACCTCTGCAAAAACTTGTGAGTGTAAATTACACATCTAATTTACAGCAGCACCAACTACATTACTCAATTTGGCTTCTTTTTTTTTTTCCAGGTACGAGTGCATTGACAACGATTTGCTAGTTCCTTTACAACAAGCAACTCATACAATAGTTCGTTATAGATCCAATGGTGTGGAAAAAGCATCAGAACTATAGGTAGGTACAGATATACTATGTAATGCTTCTTTACTATTGAGCGCGACTGCAGGTTGCATTGAACGTTGATCATTTGGATCGCGTTGTTCTGGCTTGATGCTTCTTCCAACTTGTTGTTTAAACACTATCAATCAATTCAATT</genome_strand>
        <mrna_strand>GAATCAAAGGAGTTCCAGTTAAAAGATTTCAGCTGGGCAATGAGTGGATTTTATAGACTCGCCTTATCAAGGCGAGTTCTCGCCTGTTCCTATCCATTTGCATACTACTATTTTGGAGCTCTGTTTGCAAATGAAATAACAAAAGAAGAACGCGAAATAAAACAGAACCTTTTTGAGGATCAACAGCAGCAACTTGAAACAAATATCGAAAGACTTTCAATGTTCTTGGAAGAGCCATTTGGTAGCTATGCTGAAGATAAGCTTGTTGAGACAAGAATGAAGATTATTACTCTCTCCACAGTAACTGATGACCTCTGCAAAAACTT............................................................................GTACGAGTGCATTGACAACGATTTGCTAGTTCCTCTACAACAAGCAACTCATACAATAGTTCGTTATAGATCCAATGGTGTGGAAAAAGCATCAGAACTATAGGTAGGTACAGATATACTATGTAATGCTTCTTTACTATTGAGCGCGACTGCAGGTTGCATTGAACGTTGATCATTTGAATCGCGTTGTTCTGGCTTGATG---CTTCCAACTTCTTGTTAAAACATTATCAATCAATTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362968" ref_strand="-" ref_description="SGN-E362968 [cLPP-2-G4]">
      <seq>tcaaggcgagttctcgcctgttcctatccatttgcatactactattttggagctctgtttgcaaatgaaataacaaaagaagaacgcgaaataaaacagaacctttttgaggatcaacagcagcaacttgaaacaaatatcgaaagactttcaatgttcttggaagagccatttggtagctatgctgaagataagcttgttgagacaagaatgaagattattactctctccacagtaactgatgacctctgcaaaaacttgtacgagtgcattgacaacgatttgctagttcctctacaacaagcaactcatacaatagttcgttatagatccaatggtgtggaaaaagcatcagaactataggtaggtacagatatactatgtaatgcttctttactattgagcgcgactgcaggttgcattgaacgttgatcatttgaatcgcgttgttctggcttgatgcttccaacttcttgttaaaacattatcaatcaattcaattgtattcttcttaaaaaaaaaaaaaaaaaaaactgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="45283" stop="46477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45583" g_stop="45842" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45843" i_stop="45918" i_length="76">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45919" g_stop="46163" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="502" r_length="242" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="534"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E362968" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362968" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45583" e_stop="45842"/>
          <exon e_start="45919" e_stop="46163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGCGAGTTCTCGCCTGTTCCTATCCATTTGCATACTACTATTTTGGAGCTCTGTTTGCAAATGAAATAACAAAAGAAGAACGCGAAATAAAACAGAACCTCTTTGAGGATCAACAGCAGCAACTTGAAACAAATATCGAAAGGCTTTCAATGTTCTTGGAAGAGCCATTTGGTAGCTATGCTGAAGATAAGCTTGTTGAGACAAGAATGAAGATTATTACTCTCTCCACAGTAACTGATGACCTCTGCAAAAACTTGTGAGTGTAAATTACACATCTAATTTACAGCAGCACCAACTACATTACTCAATTTGGCTTCTTTTTTTTTTTCCAGGTACGAGTGCATTGACAACGATTTGCTAGTTCCTTTACAACAAGCAACTCATACAATAGTTCGTTATAGATCCAATGGTGTGGAAAAAGCATCAGAACTATAGGTAGGTACAGATATACTATGTAATGCTTCTTTACTATTGAGCGCGACTGCAGGTTGCATTGAACGTTGATCATTTGGATCGCGTTGTTCTGGCTTGATGCTTCTTCCAACTTGTTGTTTAAACACTATCAATCAATTCAATT</genome_strand>
        <mrna_strand>TCAAGGCGAGTTCTCGCCTGTTCCTATCCATTTGCATACTACTATTTTGGAGCTCTGTTTGCAAATGAAATAACAAAAGAAGAACGCGAAATAAAACAGAACCTTTTTGAGGATCAACAGCAGCAACTTGAAACAAATATCGAAAGACTTTCAATGTTCTTGGAAGAGCCATTTGGTAGCTATGCTGAAGATAAGCTTGTTGAGACAAGAATGAAGATTATTACTCTCTCCACAGTAACTGATGACCTCTGCAAAAACTT............................................................................GTACGAGTGCATTGACAACGATTTGCTAGTTCCTCTACAACAAGCAACTCATACAATAGTTCGTTATAGATCCAATGGTGTGGAAAAAGCATCAGAACTATAGGTAGGTACAGATATACTATGTAATGCTTCTTTACTATTGAGCGCGACTGCAGGTTGCATTGAACGTTGATCATTTGAATCGCGTTGTTCTGGCTTGATG---CTTCCAACTTCTTGTTAAAACATTATCAATCAATTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548765" ref_strand="+" ref_description="SGN-E548765 [TUS-64-D10]">
      <seq>aagctactgacgacgtcgtctcgactgcactgctaaatctccgtctagtcgccgccgttcaatgtcgtcatcgtcgtcgatgttaaacaacagtgtctccattactgtctccgacgacgagcccgacgaatttgcaaacaagcttagggcacgagctcgtaggaagagaaagaaatatgccctccgaggccaaactggtttctctcatattgtcctgaaaaagctcctcaggtggtggccttttctgctattcttacttgcagcaggtcttcttatctttgaagcctctcgaattggaagaagacctagttcggttgttaaaaattcgaatccagtgactggaaataaaactgataaggttgttgagaagaaaccgccgacgaacttgaatcgccttgatctagtgactcatgtcgtgcatggagttagagaaccttgcttgaagttactaccagctgaaggacttgagcatcttgatttccccatggataaagtacctgccgatcctattaaacgggtggtatacatcacagaggccaatcctgcttctctagatgatggaatgccatttgagcaacactcgggggcgtcaagatttaaattattcacagggaaacaaactctcaagcaaagggatgaaagttttaaggtgaaaggagcgggtgcatccatccactgtggtttttacagtgataaaggaggctttagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="47229" stop="49996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47529" g_stop="47962" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47963" i_stop="49312" i_length="1350">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49313" g_stop="49527" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="649" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49528" i_stop="49635" i_length="108">
            <donor d_prob="0.070" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49636" g_stop="49696" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="710" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E548765" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47529" e_stop="47962"/>
          <exon e_start="49313" e_stop="49527"/>
          <exon e_start="49636" e_stop="49696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTACTGACGACGTCGTCTCGACTGCACTGCTTAATCTCCGTCTAGTCGCCGCCGTTCAATGTCGTCATCGTCGTCGATGTTAAACAACAGTGTCTCCATTACTGTCTCCGACGACGAGCCCGACGAATTTGCAAACAAGCTTAGGGCACGAGCTCGTAGGAAGAGAAAGAAATATGCCCTCCGAGGCAAAACTGGTTTCTCTCATATTGTCCTGAAAAAGCTCCTTAGGTGGTGGCCTTTTCTGCTATTCTTACTTGCAGCAGGTCTTCTTATCTTTGAAGCCTCTCGAATTGGAAGAAGACCTAGTTCGGTTGTTAAAAATTCGAATCCAGTGACTGGAAATAAAACTGATAAGGTTGTTGAGAAGAAACCGCCGACGAACTTGAATCGCCTTGATCTAGTGACTCATGTCGTGCATGGAGTTAGAGAACGTGAGTTTCTTTTCGCAATATGATCTAAATTATCTTAGTGCCTAATTGCCTTTTGCTATGATAGCAGTTTATGTAAAATGTGCACATTACTTGCATTATTGAATTTCACAGCTTGTAGTTATTTTAGGATTGGCCTGCTTGAAATATGCATGTCTGTAGTCTTTTGTTCAGTATCTGATTAGAACTTATGAATGATACTGATTGTTATATCTATAAATTGATGAATCTAATGCTAGGTATTAGTACAATGATAAAAATCTGGTCCTTACTATTTCAGTTGCCTTATTCAGAATCTTCCACTCCGAAACGATATCCCTTGGACTTTACCAAGCTAGAAATTGTTCATGATCCAATTTGAGCATCTCTACAGGATAGACCTCCATAGAAAGAGGGCTGAGCGTTGTGAGTTGGGATACTGATCCATATAGAACACTAAAAAGTTAAAATTCAGTTGCAACTGTCTTTCTGAGAATAAAAATGTGTTTCAAACGAATAGAACACTAAAGAATTGTTTTGGTCAATACAACAGTTGTCTTCATTATGTACACTGAGATGCATATACTTGCCTTGGAGAGACTTAAAATGATCTGTACTCAAAATAGAGATAATTAAATTCTCTATGTGAAGATATAAATGTACCCTTCCTTGTGTTCTAAATAACCTTGATTTGTTCTTAGAAGAAAGAGACTATACTTGTACAAAAAAGAATATGCTCATCAAGTAGCCTGACGGAACTGGTTGGAACTGCATCTGTCTAAATATGTAACCTTTGTCAGCCAGAACATGTTAACGGCTGCGTTGCTTGGAAACACAGATAGCAGTTATAACTCCTTGCCTCTTCATAAAAGCCGATAGGACTCTTCAGCTTTCATTAACAACCCTTTAGGTGGTTTCGTCTGAGGCATCTGAAGGGTTATTTTTTTCATTCACCTAGCAACTGAATTTTCTCAAGGGCATGACAATTGGATCTAGTCTCTGTTCTCTGCTTACCCCAAATATACTTTAATTAGGAAGCCAAACCTCAAAAAGTTGACCAAATGAACCAATCTCAAGCTACATTCTCTCCCTCCAGTAGAACAAATGACTGTGTAGTCAAGTTCTCTATCAATCACGAGAAAATCAAATCCAAATGATTCTAGGAGTTACTATATGAGAATCTAAGATATAGAAAGAATCAGAAATTTGGTACTAAGGTGATCTATTTGCCATATGAGTAGATCATTTGGCTTTTCTTGGGGTAAAACTATTGTATTCAGCACAGCTTTGTGGTTAATTACATAGCAATTGTCAAAGTGCTATATTGTTTGACCCATTGTCTTCAATACTGTGTAACATAACATGGATTCGCAGCTTGCTTGAAGTTACTACCAGCTGAAGGACTTGAGCATCTTGATTTCCCCATGGATAAAGTACCTGCCGATCCTATTAAACAGGTGGTATACATCACAGAGGCCAATCCTGCTTCTCTAGATGATGGAATGCCATTTGAGCAACACTCGGGGGCGTCAAGATTTAATTTATTCACAGGAAACCAAACTCTCAAGCAAAGGGATGAAAGTTTTAAGGTTGTCGACCCGCGTCTTGCTTTTTGGTGATCACCTATTTATCTGTGAAATAATTTATGTATTTCTCTTTCTTCTTCTTTTGACAATTTTGCTTAAGCATTATCTCAGGTGAAAGGAGCGGGTGCATCCATCCACTGTGGTTTTTACAGTGATAAAGGAGGCTTTAGGA</genome_strand>
        <mrna_strand>AAGCTACTGACGACGTCGTCTCGACTGCACTGCTAAATCTCCGTCTAGTCGCCGCCGTTCAATGTCGTCATCGTCGTCGATGTTAAACAACAGTGTCTCCATTACTGTCTCCGACGACGAGCCCGACGAATTTGCAAACAAGCTTAGGGCACGAGCTCGTAGGAAGAGAAAGAAATATGCCCTCCGAGGCCAAACTGGTTTCTCTCATATTGTCCTGAAAAAGCTCCTCAGGTGGTGGCCTTTTCTGCTATTCTTACTTGCAGCAGGTCTTCTTATCTTTGAAGCCTCTCGAATTGGAAGAAGACCTAGTTCGGTTGTTAAAAATTCGAATCCAGTGACTGGAAATAAAACTGATAAGGTTGTTGAGAAGAAACCGCCGACGAACTTGAATCGCCTTGATCTAGTGACTCATGTCGTGCATGGAGTTAGAGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTTGAAGTTACTACCAGCTGAAGGACTTGAGCATCTTGATTTCCCCATGGATAAAGTACCTGCCGATCCTATTAAACGGGTGGTATACATCACAGAGGCCAATCCTGCTTCTCTAGATGATGGAATGCCATTTGAGCAACACTCGGGGGCGTCAAGATTTAAATTATTCACAGGGAAACAAACTCTCAAGCAAAGGGATGAAAGTTTTAAG............................................................................................................GTGAAAGGAGCGGGTGCATCCATCCACTGTGGTTTTTACAGTGATAAAGGAGGCTTTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301226" ref_strand="+" ref_description="SGN-E301226 [cLEW-24-E3]">
      <seq>agctactgacgacgtcgtctcgactgcactgctaaatctccgtctagtcgccgccgttcaatgtcgtcatcgtcgtcgatgttaaacaacagtgtctccattactgtctccgacgacgagcccgacgaatttgcaaacaagcttagggcacgagctcgtaggaagagaaagaaatatgccctccgaggccaaactggtttctctcatattgtcctgaaaaagctcctcaggtggtggccttttctgctattcttacttgcagcaggtcttcttatctttgaagcctctcgaattggaagaagacctagttcggttgttaaaaattcgaatccagtgactggaaataaaactgataaggttgttgagaagaaaccgccgacgaacttgaatcgccttgatctagtgactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="47230" stop="48241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47530" g_stop="47941" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E301226" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47530" e_stop="47941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACTGACGACGTCGTCTCGACTGCACTGCTTAATCTCCGTCTAGTCGCCGCCGTTCAATGTCGTCATCGTCGTCGATGTTAAACAACAGTGTCTCCATTACTGTCTCCGACGACGAGCCCGACGAATTTGCAAACAAGCTTAGGGCACGAGCTCGTAGGAAGAGAAAGAAATATGCCCTCCGAGGCAAAACTGGTTTCTCTCATATTGTCCTGAAAAAGCTCCTTAGGTGGTGGCCTTTTCTGCTATTCTTACTTGCAGCAGGTCTTCTTATCTTTGAAGCCTCTCGAATTGGAAGAAGACCTAGTTCGGTTGTTAAAAATTCGAATCCAGTGACTGGAAATAAAACTGATAAGGTTGTTGAGAAGAAACCGCCGACGAACTTGAATCGCCTTGATCTAGTGACTCATG</genome_strand>
        <mrna_strand>AGCTACTGACGACGTCGTCTCGACTGCACTGCTAAATCTCCGTCTAGTCGCCGCCGTTCAATGTCGTCATCGTCGTCGATGTTAAACAACAGTGTCTCCATTACTGTCTCCGACGACGAGCCCGACGAATTTGCAAACAAGCTTAGGGCACGAGCTCGTAGGAAGAGAAAGAAATATGCCCTCCGAGGCCAAACTGGTTTCTCTCATATTGTCCTGAAAAAGCTCCTCAGGTGGTGGCCTTTTCTGCTATTCTTACTTGCAGCAGGTCTTCTTATCTTTGAAGCCTCTCGAATTGGAAGAAGACCTAGTTCGGTTGTTAAAAATTCGAATCCAGTGACTGGAAATAAAACTGATAAGGTTGTTGAGAAGAAACCGCCGACGAACTTGAATCGCCTTGATCTAGTGACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706606" ref_strand="+" ref_description="SGN-E706606 [FA30BG03]">
      <seq>tattaaacgggtggtatacatcacagaggccaatcctgcttctctagatgatggaatgccatatgagctacacttgggggcgtcaagatttaatttattcacaggaaaccaaactctcaagcaaagggatgaaagttttaaggtgaaaggagcgggtgcatccatccactgtggtttttacagtgataaaggaggctttaggatttctgttgaagatagaagttacatggaatcctgcaaagctgtggtgtcaacttgtgcatttggtggtggagatgatctctatcaacctataggaatgtcagagtcatctctcaagaaggtttgctttgtggctttttgggatgaaattacacttgcatcacaagaggcagatggtcataaagttggtgatgaccgttacatcggaaagtggcgcatcatcctggttaagaatctaccattcacagaccaaaggttgaatggtaaaatcccaaagatgctggcccatcgtctctttccaagttctagatattccatttgggtagactcaaagtcccaacttaggagggatccgttgggtgtgttggaggctctgctttggcgttcaaactctgtactagcaatctcggaacatggagctcggagtagtgtgtatgatgaggcaaaggctgttgtcaagaaaaataaagccactccagaggaagtggccgtgcagatagctcagtaccgtcaagatggactccccgaggataagagattcaatgggaaaaaagctctatctgaggcttcaattattgtgagagagcacaccccatcaactaatctgctcatgtgcttatggttcaatgaggtggttcgctttacatcccgtgatcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="49086" stop="51302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49386" g_stop="49527" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49528" i_stop="49635" i_length="108">
            <donor d_prob="0.070" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49636" g_stop="49815" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="322" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49816" i_stop="49970" i_length="155">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49971" g_stop="50126" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="478" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50127" i_stop="50467" i_length="341">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50468" g_stop="50744" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="755" r_length="277" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50745" i_stop="50895" i_length="151">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50896" g_stop="51002" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="862" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E706606" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49386" e_stop="49527"/>
          <exon e_start="49636" e_stop="49815"/>
          <exon e_start="49971" e_stop="50126"/>
          <exon e_start="50468" e_stop="50744"/>
          <exon e_start="50896" e_stop="51002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAACAGGTGGTATACATCACAGAGGCCAATCCTGCTTCTCTAGATGATGGAATGCCATTTGAGCAACACTCGGGGGCGTCAAGATTTAATTTATTCACAGGAAACCAAACTCTCAAGCAAAGGGATGAAAGTTTTAAGGTTGTCGACCCGCGTCTTGCTTTTTGGTGATCACCTATTTATCTGTGAAATAATTTATGTATTTCTCTTTCTTCTTCTTTTGACAATTTTGCTTAAGCATTATCTCAGGTGAAAGGAGCGGGTGCATCCATCCACTGTGGTTTTTACAGTGATAAAGGAGGCTTTAGGATTTCTGTTGAAGATAGAAGTTATATGGAATCCTGCAAAGCTGTGGTGTCAACTTGTGCATTTGGTGGTGGAGATGATCTCTATCAACCTATAGGAATGTCAGAGTCATCTCTCAAGAAGGTTATTTTTTGGGATTTTTAATGCTCATGATTGATTTCCGGTCTAAAGTTTCCACTATGTAAAATTACAATTAAATCACAATGTAGTTGGTTTGGAGATTTAAAGTGGTGCTTGACACCTTAGTTAATTTATGTAGTTAAAATTAAATGATGCAGGTTTGCTTTGTGGCTTTTTGGGATGAAATTACACTTGCATCACAAGAGGCAGATGGTCATAAAGTTGGTGATGACCGTTACATCGGAAAGTGGCGCATCATCCTGGTTAAGAATCTACCATTCACAGACCAAAGGTTGAATGGTAAAATCCCAAAGGTATGCTTGTTGCCCGATTCCTCAATTTCTTGTATGCTTTTCCATTTTACAATGAACATATCCTAATACTTAAAGTGGAACTTCTAGCAATCTTGTCCTACTCCCGATATTCTTCTCCATGAGTCGTCGAGAAATATGGTGCCTTACAAAGTTGAAGTGTGATGAAGCAAATTGGAATGATGAACCAATTTTGAAGATTAAAAATGTCTGGAAAAGAAAATTTGTTGTCTTTTAATACATCCTCTTAAGATTTAGAAGTATGAGGGTTGCATCAGTACGATTGTGAATATTTTACTAGCGAAATGATTTATGAGTATTTAATCCATGTCTAATTTAATCAGATGCTGGCCCATCGTCTCTTTCCAAATTCTAGATATTCCATTTGGGTAGACTCAAAGTCCCAACTTAGGAGGGATCCATTGGGTGTGTTGGAGGCTCTGCTTTGGCGTTCAAACTCTGTACTAGCAATCTCGGAACATGGAGCTCGGAGTAGTGTGTATGATGAGGCAAAGGCTGTTGTCAAGAAAAATAAAGCCACTCCAGAGGAAGTGGCCGTGCAGATAGCTCAGTACCGTCAAGATGGACTCCCCGAGGATAAGAGATTCAATGGGAAAAAAGGTAGAATTTCTCGTCCTTGTCAGCTGAAGTGAAGCATATACCGTGATTGTTATCCACTGCATAATTATAGTACTGCTATTCCAAAATTGTTCAAATGAGATGATTGTATTTTAATCGGTAAATCATTCTCACACTCACTATATCGGTGCAGCTCTATCTGAGGCTTCAATTATTGTGAGAGAGCACACCCCATCAACTAATCTGCTCATGTGCTTATGGTTCAATGAGGTGGTTCGCTTTACATCCCGTGATCAACTG</genome_strand>
        <mrna_strand>TATTAAACGGGTGGTATACATCACAGAGGCCAATCCTGCTTCTCTAGATGATGGAATGCCATATGAGCTACACTTGGGGGCGTCAAGATTTAATTTATTCACAGGAAACCAAACTCTCAAGCAAAGGGATGAAAGTTTTAAG............................................................................................................GTGAAAGGAGCGGGTGCATCCATCCACTGTGGTTTTTACAGTGATAAAGGAGGCTTTAGGATTTCTGTTGAAGATAGAAGTTACATGGAATCCTGCAAAGCTGTGGTGTCAACTTGTGCATTTGGTGGTGGAGATGATCTCTATCAACCTATAGGAATGTCAGAGTCATCTCTCAAGAAG...........................................................................................................................................................GTTTGCTTTGTGGCTTTTTGGGATGAAATTACACTTGCATCACAAGAGGCAGATGGTCATAAAGTTGGTGATGACCGTTACATCGGAAAGTGGCGCATCATCCTGGTTAAGAATCTACCATTCACAGACCAAAGGTTGAATGGTAAAATCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................ATGCTGGCCCATCGTCTCTTTCCAAGTTCTAGATATTCCATTTGGGTAGACTCAAAGTCCCAACTTAGGAGGGATCCGTTGGGTGTGTTGGAGGCTCTGCTTTGGCGTTCAAACTCTGTACTAGCAATCTCGGAACATGGAGCTCGGAGTAGTGTGTATGATGAGGCAAAGGCTGTTGTCAAGAAAAATAAAGCCACTCCAGAGGAAGTGGCCGTGCAGATAGCTCAGTACCGTCAAGATGGACTCCCCGAGGATAAGAGATTCAATGGGAAAAAAG.......................................................................................................................................................CTCTATCTGAGGCTTCAATTATTGTGAGAGAGCACACCCCATCAACTAATCTGCTCATGTGCTTATGGTTCAATGAGGTGGTTCGCTTTACATCCCGTGATCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317952" ref_strand="+" ref_description="SGN-E317952 [cTOA-30-G18]">
      <seq>caatctcggaacatggagctcggagtagtgtgtatgatgaggcaaaggctgttgtcaagaaaaataaagccactccagaggaagtggccgtgcagatagctcagtaccgtcaagatggactccccgaagataagagattcaatgggaaaaaagctctatctgaggcttcaattattgtgagagagcacaccccatcaactaatctgctcatgtgcttatggttcaatgaggtggttcgctttacatcccgtgatcaactgagttttccatatgtcctttggcggtttaaagagttcaagaatatcaacatgtttcctgtttgtacacgcaaggatctcgtcaatagcatgggtcacataagaaaagcaaagcctctaacaggttgatgtatattcttggtttgcacgagaatggatagccgaaacaacaacacccagtctttctccaagtttcaagcatatttgcttcctctgtgatatgtgctaatgacattcaatagagagatcagataggattagcatattcctatttgttcttcagaattcaaagggcactgtttttccgaagccctggtgggaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="50292" stop="51625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50592" g_stop="50744" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50745" i_stop="50895" i_length="151">
            <donor d_prob="0.757" d_score="0.98"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50896" g_stop="51325" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="583" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E317952" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50592" e_stop="50744"/>
          <exon e_start="50896" e_stop="51325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCGGAACATGGAGCTCGGAGTAGTGTGTATGATGAGGCAAAGGCTGTTGTCAAGAAAAATAAAGCCACTCCAGAGGAAGTGGCCGTGCAGATAGCTCAGTACCGTCAAGATGGACTCCCCGAGGATAAGAGATTCAATGGGAAAAAAGGTAGAATTTCTCGTCCTTGTCAGCTGAAGTGAAGCATATACCGTGATTGTTATCCACTGCATAATTATAGTACTGCTATTCCAAAATTGTTCAAATGAGATGATTGTATTTTAATCGGTAAATCATTCTCACACTCACTATATCGGTGCAGCTCTATCTGAGGCTTCAATTATTGTGAGAGAGCACACCCCATCAACTAATCTGCTCATGTGCTTATGGTTCAATGAGGTGGTTCGCTTTACATCCCGTGATCAACTGAGTTTTCCATATGTCCTTTGGCGGTTTAAAGAGTTCAAGAATATCAACATGTTTCCTGTTTGTACACGCAAGGATCTCGTCAATAGCATGGGTCACATAAGAAAAGCAAAGCCTCTAACAGGTTGATGTATATTCTTGGTTTGCACGAGAATGGATAGCCGAAACAACAACACCCAGTCTTTCTCCAAGTTTCAAGCATATTTGCTTCCTCTGTGATATGTGCTAATGACATTCAATAGAGAGATCAGATAGGATTAGCATATTCCTATTTGTTCTTCAGAATTCAAAGGGCACTGTTTTTTCGAAGCCCTGGTGGGAATGGG</genome_strand>
        <mrna_strand>CAATCTCGGAACATGGAGCTCGGAGTAGTGTGTATGATGAGGCAAAGGCTGTTGTCAAGAAAAATAAAGCCACTCCAGAGGAAGTGGCCGTGCAGATAGCTCAGTACCGTCAAGATGGACTCCCCGAAGATAAGAGATTCAATGGGAAAAAAG.......................................................................................................................................................CTCTATCTGAGGCTTCAATTATTGTGAGAGAGCACACCCCATCAACTAATCTGCTCATGTGCTTATGGTTCAATGAGGTGGTTCGCTTTACATCCCGTGATCAACTGAGTTTTCCATATGTCCTTTGGCGGTTTAAAGAGTTCAAGAATATCAACATGTTTCCTGTTTGTACACGCAAGGATCTCGTCAATAGCATGGGTCACATAAGAAAAGCAAAGCCTCTAACAGGTTGATGTATATTCTTGGTTTGCACGAGAATGGATAGCCGAAACAACAACACCCAGTCTTTCTCCAAGTTTCAAGCATATTTGCTTCCTCTGTGATATGTGCTAATGACATTCAATAGAGAGATCAGATAGGATTAGCATATTCCTATTTGTTCTTCAGAATTCAAAGGGCACTGTTTTTCCGAAGCCCTGGTGGGAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542750" ref_strand="+" ref_description="SGN-E542750 [TUS-64-D10](-)">
      <seq>agagttcaagaatatcaacatgtttcctgtttgtacacgcaaggatctcgtcaatagcatgggtcacataagaaaagcaaagcctctaacaggttgatgtatattcttggtttgcacgagaatggatagccgaaacaacaacacccagtctttctccaagtttcaagcatatttgcttcctctgtgatatgtgctaatgacattcaatagagagatcagataggattagcatattcctatttgttcttcagaattcaaagggcactgtttttccgaagccctggtgggaatgggatagagagagcccgaaaaggtttcatcgaacgaaagaagaaaaatgcagggatggtatgttgtgcatttgaacaaactggccttctttaggagggtcttttttttaacctatttataattcttttgttgacctacgtacactgttaaaattgtggtgagttttatcaaatgtgaagcaccaaatttttagctctcttgaattagtgcaagatttgctgtaaagtatttgattggatatttagttactcaattgtatgtgaaaacttagcactatgttgtgtctagagtgagtaacatttctatacaaactaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="50732" stop="51948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51032" g_stop="51660" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E542750" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51032" e_stop="51660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCAAGAATATCAACATGTTTCCTGTTTGTACACGCAAGGATCTCGTCAATAGCATGGGTCACATAAGAAAAGCAAAGCCTCTAACAGGTTGATGTATATTCTTGGTTTGCACGAGAATGGATAGCCGAAACAACAACACCCAGTCTTTCTCCAAGTTTCAAGCATATTTGCTTCCTCTGTGATATGTGCTAATGACATTCAATAGAGAGATCAGATAGGATTAGCATATTCCTATTTGTTCTTCAGAATTCAAAGGGCACTGTTTTTTCGAAGCCCTGGTGGGAATGGGATAGAGAGAGCCCGAAAAGGTTTCATCGTACGAAAGAAGAAAAATGCAGTGATGGTATGTTGTGCATTTGAACAAACTAGCCTTCTTTAGGAGGGTCTTTTTTTTAACCTATTTATAATTCTTTTGTTGACCTACGTACACTGTTAAAATTGTGGTGAGTTTTATCAAATGTGAAGCACCAAATTTTTAGCTCTCTTGAATTAGTGCAAGATTTGCTGTAAACTATCATGTAAAGTATTTGATTGGATATTTAGTTACTCAATTGTATGTGAAAACTTAGCACTATGTTGTGTCTAGAGTGAGTAACATTTCTATACAAACTACCCCTTTGTGTA</genome_strand>
        <mrna_strand>AGAGTTCAAGAATATCAACATGTTTCCTGTTTGTACACGCAAGGATCTCGTCAATAGCATGGGTCACATAAGAAAAGCAAAGCCTCTAACAGGTTGATGTATATTCTTGGTTTGCACGAGAATGGATAGCCGAAACAACAACACCCAGTCTTTCTCCAAGTTTCAAGCATATTTGCTTCCTCTGTGATATGTGCTAATGACATTCAATAGAGAGATCAGATAGGATTAGCATATTCCTATTTGTTCTTCAGAATTCAAAGGGCACTGTTTTTCCGAAGCCCTGGTGGGAATGGGATAGAGAGAGCCCGAAAAGGTTTCATCGAACGAAAGAAGAAAAATGCAGGGATGGTATGTTGTGCATTTGAACAAACTGGCCTTCTTTAGGAGGGTCTTTTTTTTAACCTATTTATAATTCTTTTGTTGACCTACGTACACTGTTAAAATTGTGGTGAGTTTTATCAAATGTGAAGCACCAAATTTTTAGCTCTCTTGAATTAGTGCAAGA-TT--TG--------C-TGTAAAGTATTTGATTGGATATTTAGTTACTCAATTGTATGTGAAAACTTAGCACTATGTTGTGTCTAGAGTGAGTAACATTTCTATACAAACTAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541076" ref_strand="+" ref_description="SGN-E541076 [TUS-61-K23](-)">
      <seq>aaggctgttggtactgcggttgatctgaaccaattactacacaaaattggaagatttcagatgtaagtttagtcgcagataatgtatcagatctcatatttcaaaaattgaaaaatttactcaaacaaatgccgcagaaattgcatcatttacagtcctccattgaaaagggtattttggattgccggttcttcagtcttttagcagttgcagggacattgattggttcattattatgctttattgagggttgttacttaatcatagagtcatacatccactattttatcgcaatctcacataaatcagaccttggacatgtagtgcagctattaatcgaagctatcgatatgtttctattggggactgctatgcttacatttggaatgggattgtatgtcatgtttgtgggatcaagaaatattaatgttaaaggagatgatgatgatcaattgtcaggcaaaaagttgtattattttcaaacacttccatcattaatgggaatgaaatcagtaatgcaagcaaaagcaagaataggacatgcacttataatgttacttcaagttggagtattggagaagttcaagaacatacctgtggttaatggattggatcttgcttgttttgctgctgctgtttttgtttcatctatttgtgttttcattctttctaggcttgctgccactaacacaaaggctggagactaagaaaaatgcacatttttacactatatgtataaagcaagaaaaaaaaattataagcaaaaaataggtcttaggacttgttgtagttggccttattatttaacataaatattctttcaatttgaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="53786" stop="51490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53486" g_stop="53316" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53315" i_stop="52680" i_length="636">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52679" g_stop="52602" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="248" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52601" i_stop="52509" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.032" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52508" g_stop="52409" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="348" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52408" i_stop="52285" i_length="124">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="51787" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="845" r_length="497" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E541076" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53486" e_stop="53316"/>
          <exon e_start="52679" e_stop="52602"/>
          <exon e_start="52508" e_stop="52409"/>
          <exon e_start="52284" e_stop="51787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAGGTGTGACTTTTCTTTAATTTTAAGTCTTAATTTATAATTGCTTATGGTAAATATGATTTGTGTAATCACAGTGTTGAAATTATTCCAAGTATTACTTGCTGGAGTACAATTTTTTTCCTATTCACTAGCCGAGACTAACACATATCCAATAATTACATCACGTATTTGATTTTGACAGATTACTAAACTTGTTGAGTTTTTTCTCTTCAGGTACCTCAACGATGTCATTTTCTTATTGAATCATTGAACCACCCATAATTTCTTCCTATAGTAAATGCCTTCAATTGTGTTCGTATTATAATGATTTTGATTGAAGAAATGAGTCTCATTTGTTTTTCTGATGTGATCAAATAACTTGAAGTGAAACACAATTATTCTCAAACAGTTTCACTATCAATTGGACTAATGAGTTTTGAAAATCTTCTATCAATATATCTTACAAAATTTGGTTCCACATCAGCCAACAGTGAACAAATTATGAATGGTTCAACGAATCAATAGGAAAATAACATAGTTGAGGTACCTGAGCAGATAAAACTCAACAAGTTTTAGAGATTTGTTTATGTATTTGGCCTTTAAACAGATCAAGTTTGTTTTTTCCATTTTTTGATTGGATATTGGAACTCTGTTTTGCAGGGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAGGTATAATATATTAGTACTAATTACTAGTATTATTATTTTATCATGAAAAAAAATCTGATTTTATGCAATTTTAAGACTAATAAATATTCTCAGGGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCGGTATGTTTTCCCTCTCTTAAACGTTAAAATTATTAATCGAGAACTGAATGAAACAATTGTTTACATTATCAGCATAAAGAAGTTAAACTGTAACCGAATAACGTTCTTTTTTTTTTTTTTTCAGATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTGTCAGGCAAAAAGTTGTATTATTTTCAAACACTTCCATCATTAATGGGAATGAAATCAGTAATGCAAGCAAAAGCAAGAATAGGACATGCACTTATAATGTTACTTCAAGTTGGAGTATTGGAGAAGTTCAAGAACATACCTGTGGTTAATGGATTGGATCTTGCTTGTTTTGCTGCTGCTGTTTTTGTTTCATCTATTTGTGTTTTCATTCTTTCTAGGCTTGCTGCCACTAACACAAAGGCTGGAGACTAAGAAAAATGCACATTTTTACACTATATGTATAAAGCAAGAAAAAAAAATTATAAGCAAAAAATAGGTCTTAGGACTTGTTGTAGTTGGCCTTATTATTTAACATAAATATTCTTTCAATTTGTAACAATTAAATACATTT</genome_strand>
        <mrna_strand>AAGGCTGTTGGTACTGCGGTTG-ATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAG.............................................................................................GGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCG............................................................................................................................ATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTGTCAGGCAAAAAGTTGTATTATTTTCAAACACTTCCATCATTAATGGGAATGAAATCAGTAATGCAAGCAAAAGCAAGAATAGGACATGCACTTATAATGTTACTTCAAGTTGGAGTATTGGAGAAGTTCAAGAACATACCTGTGGTTAATGGATTGGATCTTGCTTGTTTTGCTGCTGCTGTTTTTGTTTCATCTATTTGTGTTTTCATTCTTTCTAGGCTTGCTGCCACTAACACAAAGGCTGGAGACTAAGAAAAATGCACATTTTTACACTATATGTATAAAGCAAGAAAAAAAAATTATAAGCAAAAAATAGGTCTTAGGACTTGTTGTAGTTGGCCTTATTATTTAACATAAATATTCTTTCAATTTG-AACAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548490" ref_strand="+" ref_description="SGN-E548490 [TUS-61-K23]">
      <seq>aatggcgataaatggtagattgttacgtacctctaagcaaatgggcttaggtaacaatattggtggccagaatcagtattattctttgacgaataattattcgttacgatttaaatgtttgagtaaaggtagacttattggcggagcagagaagaaggtagtagttgtagcaactaaggctgttggtactgcggttgtatctgaaccaattactacacaaaattggaagatttcagatgtaagtttagtcgcagataatgtatcagatctcatatttcaaaaattgaaaaatttactcaaacaaatgccgcagaaattgcatcatttacagtcctccattgaaaagggtattttggattgccggttcttcagtcttttagcagttgcagggacattgattggttcattattatgctttattgagggttgttacttaatcatagagtcatacatccactattttatcgcaatctcacataaatcagaccttggacatgtagtgcagctattaatcgaagctatcgatatgtttctattggggactgctatgcttacatttggaatgggattgtatgtcatgtttgtgggatcaagaaatattaatgttaaaggagatgatgatgatcaattgtcaggcaaaaagttgtattatttttcaacacttccatcattaatgggaaatgaatcagtaatgcaagcaaaagcaagaataggacatgcacttataatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="53961" stop="51775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53661" g_stop="53316" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53315" i_stop="52680" i_length="636">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52679" g_stop="52602" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="424" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52601" i_stop="52509" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.032" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52508" g_stop="52409" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="524" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52408" i_stop="52285" i_length="124">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="52075" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="734" r_length="210" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E548490" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53661" e_stop="53316"/>
          <exon e_start="52679" e_stop="52602"/>
          <exon e_start="52508" e_stop="52409"/>
          <exon e_start="52284" e_stop="52075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGATAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATATTGGTGGCCAGAATCAGTATTATTCTTTGACGAATAATTATTCGTTACGATTTAAATGTTTGAGTAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTTGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAGGTGTGACTTTTCTTTAATTTTAAGTCTTAATTTATAATTGCTTATGGTAAATATGATTTGTGTAATCACAGTGTTGAAATTATTCCAAGTATTACTTGCTGGAGTACAATTTTTTTCCTATTCACTAGCCGAGACTAACACATATCCAATAATTACATCACGTATTTGATTTTGACAGATTACTAAACTTGTTGAGTTTTTTCTCTTCAGGTACCTCAACGATGTCATTTTCTTATTGAATCATTGAACCACCCATAATTTCTTCCTATAGTAAATGCCTTCAATTGTGTTCGTATTATAATGATTTTGATTGAAGAAATGAGTCTCATTTGTTTTTCTGATGTGATCAAATAACTTGAAGTGAAACACAATTATTCTCAAACAGTTTCACTATCAATTGGACTAATGAGTTTTGAAAATCTTCTATCAATATATCTTACAAAATTTGGTTCCACATCAGCCAACAGTGAACAAATTATGAATGGTTCAACGAATCAATAGGAAAATAACATAGTTGAGGTACCTGAGCAGATAAAACTCAACAAGTTTTAGAGATTTGTTTATGTATTTGGCCTTTAAACAGATCAAGTTTGTTTTTTCCATTTTTTGATTGGATATTGGAACTCTGTTTTGCAGGGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAGGTATAATATATTAGTACTAATTACTAGTATTATTATTTTATCATGAAAAAAAATCTGATTTTATGCAATTTTAAGACTAATAAATATTCTCAGGGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCGGTATGTTTTCCCTCTCTTAAACGTTAAAATTATTAATCGAGAACTGAATGAAACAATTGTTTACATTATCAGCATAAAGAAGTTAAACTGTAACCGAATAACGTTCTTTTTTTTTTTTTTTCAGATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTGTCAGGCAAAAAGTTGTATTATTTTCAAACACTTCCATCATTAATGGGAATGAAATCAGTAATGCAAGCAAAAGCAAGAATAGGACATGCACTTATAATGTTAC</genome_strand>
        <mrna_strand>AATGGCGATAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATATTGGTGGCCAGAATCAGTATTATTCTTTGACGAATAATTATTCGTTACGATTTAAATGTTTGAGTAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTTGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAG.............................................................................................GGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCG............................................................................................................................ATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTGTCAGGCAAAAAGTTGTATTATTTTTCAACACTTCCATCATTAATGGGAAATGAATCAGTAATGCAAGCAAAAGCAAGAATAGGACATGCACTTATAATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243797" ref_strand="+" ref_description="SGN-E243797 [cLED-35-P3]">
      <seq>taaatggtagattgttacgtacctctaagcaaatgggcttaggtaacaataatggtggccagaatcagtattattctttgatgaataattattcgttacgatttaaatgtttgaacaaaggtagacagaaggtagtagtagtagcaactaaggctgttggtacagcggttgtatctgaaccaattactacacaaaattggaagatttcagatgtaagtttagtcgcagataatgtatcagatctcatatttcaaaacttgaaaaatttactcaaacaaatgccgcagaaattgcatcatttacagtcctccattgaaaagggtattttggattgccggttcttcagtcttttagcagttgcagggacattgattggttcattattatgctttattgagggttgttacttaatcatagagtcatacatccactattttatcgcaatctcacataaatcagaccttggacatgtagtgcagctattaatcgaagctatcgatatgtttctattggggactgctatgcttacatttggaatgggattgtatgtcatgtttgtgggatcaagaaatattaatgttaaaggagatgatgatgatcaattttcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="53953" stop="51872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53653" g_stop="53316" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53315" i_stop="52680" i_length="636">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52679" g_stop="52602" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52601" i_stop="52509" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.032" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52508" g_stop="52409" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="498" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52408" i_stop="52285" i_length="124">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="52174" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="609" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E243797" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53653" e_stop="53316"/>
          <exon e_start="52679" e_stop="52602"/>
          <exon e_start="52508" e_stop="52409"/>
          <exon e_start="52284" e_stop="52174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATATTGGTGGCCAGAATCAGTATTATTCTTTGACGAATAATTATTCGTTACGATTTAAATGTTTGAGTAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTTGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAGGTGTGACTTTTCTTTAATTTTAAGTCTTAATTTATAATTGCTTATGGTAAATATGATTTGTGTAATCACAGTGTTGAAATTATTCCAAGTATTACTTGCTGGAGTACAATTTTTTTCCTATTCACTAGCCGAGACTAACACATATCCAATAATTACATCACGTATTTGATTTTGACAGATTACTAAACTTGTTGAGTTTTTTCTCTTCAGGTACCTCAACGATGTCATTTTCTTATTGAATCATTGAACCACCCATAATTTCTTCCTATAGTAAATGCCTTCAATTGTGTTCGTATTATAATGATTTTGATTGAAGAAATGAGTCTCATTTGTTTTTCTGATGTGATCAAATAACTTGAAGTGAAACACAATTATTCTCAAACAGTTTCACTATCAATTGGACTAATGAGTTTTGAAAATCTTCTATCAATATATCTTACAAAATTTGGTTCCACATCAGCCAACAGTGAACAAATTATGAATGGTTCAACGAATCAATAGGAAAATAACATAGTTGAGGTACCTGAGCAGATAAAACTCAACAAGTTTTAGAGATTTGTTTATGTATTTGGCCTTTAAACAGATCAAGTTTGTTTTTTCCATTTTTTGATTGGATATTGGAACTCTGTTTTGCAGGGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAGGTATAATATATTAGTACTAATTACTAGTATTATTATTTTATCATGAAAAAAAATCTGATTTTATGCAATTTTAAGACTAATAAATATTCTCAGGGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCGGTATGTTTTCCCTCTCTTAAACGTTAAAATTATTAATCGAGAACTGAATGAAACAATTGTTTACATTATCAGCATAAAGAAGTTAAACTGTAACCGAATAACGTTCTTTTTTTTTTTTTTTCAGATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTGTCAG</genome_strand>
        <mrna_strand>TAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATAATGGTGGCCAGAATCAGTATTATTCTTTGATGAATAATTATTCGTTACGATTTAAATGTTTGAACAAAGGTAGAC--A----------------GAAGGTAGTAGTAGTAGCAACTAAGGCTGTTGGTACAGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAACTTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAG.............................................................................................GGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCG............................................................................................................................ATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242024" ref_strand="+" ref_description="SGN-E242024 [cLED-27-D3]">
      <seq>taaatggtagattgttacgtacctctaagcaaatgggcttaggtaacaataatggtggccagaatcagtattattctttgatgaataattattcgttacgatttaaatgtttgaacaaaggtagacagaaggtagtagtagtagcaactaaggctgttggtacagcggttgtatctgaaccaattactacacaaaattggaagatttcagatgtaagtttagtcgcagataatgtatcagatctcatatttcaaaacttgaaaaatttactcaaacaaatgccgcagaaattgcatcatttacagtcctccattgaaaagggtattttggattgccggttcttcagtcttttagcagttgcagggacattgattggttcattattatgctttattgagggttgttacttaatcatagagtcatacatccactattttatcgcaatctcacataaatcagaccttggacatgtagtgcagctattaatcgaagctatcgatatgtttctattggggactgctatgcttacatttggaatgggattgtatgtcatgtttgtgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="53953" stop="51919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53653" g_stop="53316" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53315" i_stop="52680" i_length="636">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52679" g_stop="52602" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="398" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52601" i_stop="52509" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.032" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52508" g_stop="52409" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="498" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52408" i_stop="52285" i_length="124">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52284" g_stop="52219" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="564" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E242024" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53653" e_stop="53316"/>
          <exon e_start="52679" e_stop="52602"/>
          <exon e_start="52508" e_stop="52409"/>
          <exon e_start="52284" e_stop="52219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATATTGGTGGCCAGAATCAGTATTATTCTTTGACGAATAATTATTCGTTACGATTTAAATGTTTGAGTAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTTGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAGGTGTGACTTTTCTTTAATTTTAAGTCTTAATTTATAATTGCTTATGGTAAATATGATTTGTGTAATCACAGTGTTGAAATTATTCCAAGTATTACTTGCTGGAGTACAATTTTTTTCCTATTCACTAGCCGAGACTAACACATATCCAATAATTACATCACGTATTTGATTTTGACAGATTACTAAACTTGTTGAGTTTTTTCTCTTCAGGTACCTCAACGATGTCATTTTCTTATTGAATCATTGAACCACCCATAATTTCTTCCTATAGTAAATGCCTTCAATTGTGTTCGTATTATAATGATTTTGATTGAAGAAATGAGTCTCATTTGTTTTTCTGATGTGATCAAATAACTTGAAGTGAAACACAATTATTCTCAAACAGTTTCACTATCAATTGGACTAATGAGTTTTGAAAATCTTCTATCAATATATCTTACAAAATTTGGTTCCACATCAGCCAACAGTGAACAAATTATGAATGGTTCAACGAATCAATAGGAAAATAACATAGTTGAGGTACCTGAGCAGATAAAACTCAACAAGTTTTAGAGATTTGTTTATGTATTTGGCCTTTAAACAGATCAAGTTTGTTTTTTCCATTTTTTGATTGGATATTGGAACTCTGTTTTGCAGGGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAGGTATAATATATTAGTACTAATTACTAGTATTATTATTTTATCATGAAAAAAAATCTGATTTTATGCAATTTTAAGACTAATAAATATTCTCAGGGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCGGTATGTTTTCCCTCTCTTAAACGTTAAAATTATTAATCGAGAACTGAATGAAACAATTGTTTACATTATCAGCATAAAGAAGTTAAACTGTAACCGAATAACGTTCTTTTTTTTTTTTTTTCAGATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGAT</genome_strand>
        <mrna_strand>TAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATAATGGTGGCCAGAATCAGTATTATTCTTTGATGAATAATTATTCGTTACGATTTAAATGTTTGAACAAAGGTAGAC--A----------------GAAGGTAGTAGTAGTAGCAACTAAGGCTGTTGGTACAGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAACTTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAG.............................................................................................GGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCG............................................................................................................................ATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294803" ref_strand="+" ref_description="SGN-E294803 [cLET-17-P23]">
      <seq>atggcgataaatggtagattgttacgtacctctaagcaaatgggcttaggtaacaatattggtggccagaatcagtattattctttgacgaataattattcgttacgatttaaatgtttgagtaaaggtagacttattggcggagcagagaagaaggtagtagttgtagcaactaaggctgttggtactgcggttgtatctgaaccaattactacacaaaattggaagatttcagatgtaagtttagtcgcagataatgtatcagatctcatatttcaaaaattgaaaaatttactcaaacaaatgccgcagaaattgcatcatttacagtcctccattgaaaagggtattttggattgccggttcttcagtcttttagcagttgcagggacattgattggttcattattatgctttattgagggttgttacttaatcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="53960" stop="52282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53660" g_stop="53316" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53315" i_stop="52680" i_length="636">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52679" g_stop="52602" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="423" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52601" i_stop="52509" i_length="93">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.032" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52508" g_stop="52490" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="442" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E294803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53660" e_stop="53316"/>
          <exon e_start="52679" e_stop="52602"/>
          <exon e_start="52508" e_stop="52490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGATAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATATTGGTGGCCAGAATCAGTATTATTCTTTGACGAATAATTATTCGTTACGATTTAAATGTTTGAGTAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTTGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAGGTGTGACTTTTCTTTAATTTTAAGTCTTAATTTATAATTGCTTATGGTAAATATGATTTGTGTAATCACAGTGTTGAAATTATTCCAAGTATTACTTGCTGGAGTACAATTTTTTTCCTATTCACTAGCCGAGACTAACACATATCCAATAATTACATCACGTATTTGATTTTGACAGATTACTAAACTTGTTGAGTTTTTTCTCTTCAGGTACCTCAACGATGTCATTTTCTTATTGAATCATTGAACCACCCATAATTTCTTCCTATAGTAAATGCCTTCAATTGTGTTCGTATTATAATGATTTTGATTGAAGAAATGAGTCTCATTTGTTTTTCTGATGTGATCAAATAACTTGAAGTGAAACACAATTATTCTCAAACAGTTTCACTATCAATTGGACTAATGAGTTTTGAAAATCTTCTATCAATATATCTTACAAAATTTGGTTCCACATCAGCCAACAGTGAACAAATTATGAATGGTTCAACGAATCAATAGGAAAATAACATAGTTGAGGTACCTGAGCAGATAAAACTCAACAAGTTTTAGAGATTTGTTTATGTATTTGGCCTTTAAACAGATCAAGTTTGTTTTTTCCATTTTTTGATTGGATATTGGAACTCTGTTTTGCAGGGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAGGTATAATATATTAGTACTAATTACTAGTATTATTATTTTATCATGAAAAAAAATCTGATTTTATGCAATTTTAAGACTAATAAATATTCTCAGGGTTGTTACTTAATCATAG</genome_strand>
        <mrna_strand>ATGGCGATAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATATTGGTGGCCAGAATCAGTATTATTCTTTGACGAATAATTATTCGTTACGATTTAAATGTTTGAGTAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTTGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAG.............................................................................................GGTTGTTACTTAATCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578129" ref_strand="+" ref_description="SGN-E578129 [LE08EE07]">
      <seq>cagaaatggttgttttcacaaattcgatgttctgttcaattccgccatggaaactgagaaacccatcgaagattaagcaacattctatactcaaaagcccgactttgacaagctgtcaagccaaaagatgagttagttccatatgctaaagcatggtcctggcaaaagactattgttgatgagaggaaagcacaaattgaaaggaatgaggatcttgctgacacactcattgtgttgcagcatcagccggtttatccgttgggtactggtagctctgaagagaatatacattttgatgtaaagaatgctccttttgaattgtatcgaacagaacgtggtggtgaagttacttaccatggccctggtcagctagttatgtaccccatcatcaatcttcggtatcataagatggaccttcattggtacctcaggagccttgaggaggtgatcatacgagttctttcttcatcattttctatggaggcttcgagaattgatggcctaaccggtgtttgggttgggggtcagaaattagctgcaattggcattcgagtatctcaatgggtcacatatcatggcctggcactcaatgtcaccacagatctggcaccctttcaacagatagttccatgtgggatccgtgaccgtcaagttggaagcataaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="54986" stop="57021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55286" g_stop="55424" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55425" i_stop="55534" i_length="110">
            <donor d_prob="0.977" d_score="0.84"/>
            <acceptor a_prob="0.489" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55535" g_stop="55773" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="369" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55774" i_stop="56103" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56104" g_stop="56254" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="520" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56255" i_stop="56572" i_length="318">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56573" g_stop="56721" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="669" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E578129" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55286" e_stop="55424"/>
          <exon e_start="55535" e_stop="55773"/>
          <exon e_start="56104" e_stop="56254"/>
          <exon e_start="56573" e_stop="56721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATGGTTGTTTTCACAAATTCGATGTTCTGTTCAATTCCGCCATGGAAACTGAGAAACCCATCGAAGATTAAGGAACATTCTAGTACAGCTATACTCAAAAGCCCGACTTTGACAAGCTGTCAAGCCAAAAGATGGTGAGATTTTCTTGTTGACATTTTGACAAACACTTGTTGTGCAATTTAAGGCTTTTCAGTTGATTAACTCTGTTTTGACTATAGCTGTGATTGTTATGATATGTACAAAGAGTTAGTTCCATATGCTAAAGCATGGTCCTGGCAAAAGACTATTGTTGATGAGAGGAAAGCACAAATTGAAAGGAATGAGGATCTTGCTGACACACTCATTGTGTTGCAGCATCAGCCGGTTTATACGTTGGGTACTGGTAGCTCTGAAGAGAATATACATTTTGATGTAAAGAAGGCTCCTTTTGAATTGTATCGAACAGAACGTGGTGGTGAAGTTACTTACCATGGCCCTGGTCAGGTACATTTCTGATTTCACTTGTTGCTACCTACTTACCCTGCTATACTGTTCTTGTTTTCGTAGTTTAGCCAAGTGTATAGGTTTTTTTTAAGTGCTTGATGTCATTGGTTCAACGGCTTGCAAAGTAAGGGGAAGTATCAGTAAATATGATATTTTGATGGGCTATGATTGGCAAGAGATTTTACGAAGTCCCGAATCAAATGTGGCTTTGACAAGACTGGTGTGTTATACTTCATTGGGTGGCTGTTTGTGTGTGGGATTAGGATAACTCGGGTGTTTGTTTAAGCTGTTACGTTTCTGACATAAAATTGCTTCTATCTGAAATTGTAGCTAGTTATGTACCCCATCATCAATCTTCGGTATCATAAGATGGACCTTCATTGGTACCTCAGGAGCCTTGAGGAGGTGATCATACGAGTTCTTTCTTCATCATTTTCTATGGAGGCTTCAAGAATTGATGGCCTAACCGGTGTTTGGGTTGGTAAGTACTGATTCTCCATATCATTTGGTTGGCCGTATCAGTCTTTTTCTGTGGTATTATCTGATATTTCTGAAAACGACTTGGGCGTTATGGTTTTAGAAAACCTTTTGTTAAGTTGATAGTTCATAAGATATTTCTTGTTTGAAGATTTCCCATGTGCCTAGGGGTGTATATGAATGGCACTTGTGACTTGACCTGCATAGTGCATTCGGCCATATTTGAAATCTGGTTACAGTATTAAACTGATCAACCGTTTGGTCGTACTGGATTTGTGGATTGAAGGGATGTAATATTTGATCCAACACTGTCTTCTTTCAGGGGGTCAGAAATTAGCTGCAATTGGCATTCGAGTATCTCAATGGGTCACCTATCATGGCCTGGCTCTCAATGTCACCACAGATCTGGCACCCTTTCAACAGATAGTTCCATGTGGGATCCGTGACCGTCAAGTTGGAAGCATAAAGGGA</genome_strand>
        <mrna_strand>CAGAAATGGTTGTTTTCACAAATTCGATGTTCTGTTCAATTCCGCCATGGAAACTGAGAAACCCATCGAAGATTAAGCAACATTCTA-T--A-C--T-C--AAAAGCCCGACTTTGACAAGCTGTCAAGCCAAAAGATG..............................................................................................................AGTTAGTTCCATATGCTAAAGCATGGTCCTGGCAAAAGACTATTGTTGATGAGAGGAAAGCACAAATTGAAAGGAATGAGGATCTTGCTGACACACTCATTGTGTTGCAGCATCAGCCGGTTTATCCGTTGGGTACTGGTAGCTCTGAAGAGAATATACATTTTGATGTAAAGAATGCTCCTTTTGAATTGTATCGAACAGAACGTGGTGGTGAAGTTACTTACCATGGCCCTGGTCAG..........................................................................................................................................................................................................................................................................................................................................CTAGTTATGTACCCCATCATCAATCTTCGGTATCATAAGATGGACCTTCATTGGTACCTCAGGAGCCTTGAGGAGGTGATCATACGAGTTCTTTCTTCATCATTTTCTATGGAGGCTTCGAGAATTGATGGCCTAACCGGTGTTTGGGTTG..............................................................................................................................................................................................................................................................................................................................GGGGTCAGAAATTAGCTGCAATTGGCATTCGAGTATCTCAATGGGTCACATATCATGGCCTGGCACTCAATGTCACCACAGATCTGGCACCCTTTCAACAGATAGTTCCATGTGGGATCCGTGACCGTCAAGTTGGAAGCATAAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744750" ref_strand="+" ref_description="SGN-E744750 [GI|7581988]">
      <seq>ttgaactcaaccttcgcttgttgaacaaaagtcaagagttcaattcttgatttttttctaatagaaatggcatcaacttctctttctcttccttctcttaagctacaattcccctcgcatacatcatcatcttctcgtaaaaattcatcgtcttatcgtgttagtattcgtcccattcaggcttcggtgtctgagataccaccttacatttcatcaccatcacaatcaccatcatcatcgtcatcaccacctgttaaacaagcgaaactcccagcccaaaaagtccctggagattatgcactaccattagttggtccatggaaagacagacttgattacttctacaatcagggcaaaaatgaattcttcaaatcaagaattcagaagcatcagtctactgtttttcgaacgaacatgccaccaggtccattcatttcattcaatccaaacgttgttgttttgctagatggtaaaagtttccccgtactttttgatgtatctaaagttgaaaaaaaggatcttttcactggtactttcatgccatccactgatctcacaggcggttatcgagttctatcctatcttgatccttctgaaccaaaccatgccaaattgaagaaactcatgttttatctcctttcatcacgacgcaatgaagttattccagagtttcacaatagctactccgagctatttgaaactctggaaaacgaactctccacgaaaggtaaagctgggctcaatgcagcaaatgatcaagctgcagttaacttcctggctaggtctttatatggcattaatcctcaagacaccgaacttggaaccgatggacctaagttgatcggaaaatgggtgctgttccagcttcatcctttgctaattctcggcctcccaaaggttcttgaagaccttgttatgcatactttcagacttccccctgccttggtgaaaaaagattaccagagattgtacaatttcttctacgaaaactcaacttcagttcttgatgaagcagaaaaaattggtatttctcgggaagaagcttgtcataatttgctattcgcgacatgtttcaattcattcggaggaatcaaaatctttttcccgaatatgttgaaatggataggcagagcaggggctaaactccacagtcaattagcacaagaaattcgttcagtcatttcatcaaacagtgggaaggtcacaatggctgccatggaaaaaatgccactaatgaaatcagtagtctacgaatccctcagaattgaacctccggtagcatcacaatacggcagagcaaaacacgacatggtaattgaatcccacgacgcatcattcgaaatcaaagaaggtgaactcctttatgggtatcaaccatttgcaactaaagacccaaaaatcttcgatcgatcggaagaattcgtcgccgatcggttcaaaggagaagaaggggagaagctgttgaaacacgtgttatggtcaaatgggtcggaaactgaaaacgcatcgataaataacaaacagtgtgccggaaaagacttcgtcgtactggtttcaagattgttgctggtcgaactgttcctccgatatgattcgtttgagattgaagtcggtgcatctccattaggagctgcaattaccttaacttctctgagaagagccagtttttgatgaacactggcttaattaagaaattagtaatcttgtttagtgtattatatttcattgttgtgttattaagaaataattaatttacagaacagagcatgccggccagccggcggcggtaattgaggaagaggccggtgatgtgtatagtttagtatagtaaatattttttgttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="64114" stop="66562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64414" g_stop="66261" g_length="1848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1848" r_length="1848" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66262" i_stop="66401" i_length="140">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.731" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66402" g_stop="66418" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1849" r_stop="1865" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E744750" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64414" e_stop="66261"/>
          <exon e_start="66402" e_stop="66418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTCAACCTTCGCTTGTTGAACAAAAGTCAAGAGTTCAATTCTTGATTTTTTTCTAATAGAAATGGCATCAACTTCTCTTTCTCTTCCTTCTCTTAAGCTACAATTCCCCTCGCATACATCATCATCTTCTCGTAAAAATTCATCGTCTTATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCATCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCAAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTAGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGAGTTCTATCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTCCACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATGATCAAGCTGCATTTAACTTCCTGGCTAGGTCTTTATATGGCATTAATCCTCAAGACACCGAACTTGGAACCGATGGACCTAAGTTGATCGGAAAATGGGTGCTGTTCCAGCTTCATCCTTTGCTAATTCTCGGCCTCCCAAAGGTTCTTGAAGACCTTGTTATGCATACTTTCAGACTTCCCCCTGCCTTGGTGAAAAAAGATTACCAGAGATTGTACAATTTCTTCTACGAAAACTCAACTTCAGTTCTTGATGAAGCAGAAAAAATTGGTATTTCTCGGGAAGAAGCTTGTCATAATTTGCTATTCGCGACATGTTTCAATTCATTCGGAGGAATCAAAATCTTTTTCCCGAATATGTTGAAATGGATAGGCAGAGCAGGGGCTAAACTCCACAGTCAATTAGCACAAGAAATTCGTTCAGTCATTTCATCAAACAGTGGGAAGGTCACAATGGCTGCCATGGAAAAAATGCCACTAATGAAATCAGTAGTCTACGAATCCCTCAGAATTGAACCTCCGGTAGCATCACAATACGGCAGAGCAAAACACGACATGGTAATTGAATCCCACGACGCATCATTCGAAATCAAAGAAGGTGAACTCCTTTATGGGTATCAACCATTTGCAACTAAAGACCCAAAAATCTTCGATCGATCGGAAGAATTCGTCGCCGATCGGTTCATCGGAGAAGAAGGGGAGAAGCTGTTGAAACACGTGTTATGGTCAAATGGGTCGGAAACTGAAAACGCATCGATAAATAACAAACAGTGTGCCGGAAAAGACTTCGTCGTACTGGTTTCAAGATTGTTGCTGGTCGAACTGTTCCTCCGATATGATTCGTTTGAGATTGAAGTCGGTGCATCTCCATTAGGAGCTGCAATTACCTTAACTTCTCTGAGAAGAGCCAGTTTTTGATGAACACTGGCTTAATTAAGAAATTAGTAATCTTGTTTAGTGTATTATATTTCATTGTTGTGTTATTAAGAAATAATTAATTTACAGAACAGAGCATGCCGGCCAGCCGGCGGCGGTAATTGAGGAAGAGGCCGGTGATGTGTATAGTTTAGTATAGTAAATATTTTTTGTTGGAAAATGGAATGTGTAACTATGTTAATGATCAATGTAATATGTTGTTCTCAATAAATACAATAGATAATTCACCCCTCCAAATTATATAATGGAATTTATAGATTTTTGTATTGTAATGTGGTTAAGCAATGTGTATAACACAGAAGAAGAAACAATAATA</genome_strand>
        <mrna_strand>TTGAACTCAACCTTCGCTTGTTGAACAAAAGTCAAGAGTTCAATTCTTGATTTTTTTCTAATAGAAATGGCATCAACTTCTCTTTCTCTTCCTTCTCTTAAGCTACAATTCCCCTCGCATACATCATCATCTTCTCGTAAAAATTCATCGTCTTATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCATCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCAAAAAGTCCCTGGAGATTATGCACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTAGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACTGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGAGTTCTATCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTCCACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATGATCAAGCTGCAGTTAACTTCCTGGCTAGGTCTTTATATGGCATTAATCCTCAAGACACCGAACTTGGAACCGATGGACCTAAGTTGATCGGAAAATGGGTGCTGTTCCAGCTTCATCCTTTGCTAATTCTCGGCCTCCCAAAGGTTCTTGAAGACCTTGTTATGCATACTTTCAGACTTCCCCCTGCCTTGGTGAAAAAAGATTACCAGAGATTGTACAATTTCTTCTACGAAAACTCAACTTCAGTTCTTGATGAAGCAGAAAAAATTGGTATTTCTCGGGAAGAAGCTTGTCATAATTTGCTATTCGCGACATGTTTCAATTCATTCGGAGGAATCAAAATCTTTTTCCCGAATATGTTGAAATGGATAGGCAGAGCAGGGGCTAAACTCCACAGTCAATTAGCACAAGAAATTCGTTCAGTCATTTCATCAAACAGTGGGAAGGTCACAATGGCTGCCATGGAAAAAATGCCACTAATGAAATCAGTAGTCTACGAATCCCTCAGAATTGAACCTCCGGTAGCATCACAATACGGCAGAGCAAAACACGACATGGTAATTGAATCCCACGACGCATCATTCGAAATCAAAGAAGGTGAACTCCTTTATGGGTATCAACCATTTGCAACTAAAGACCCAAAAATCTTCGATCGATCGGAAGAATTCGTCGCCGATCGGTTCAAAGGAGAAGAAGGGGAGAAGCTGTTGAAACACGTGTTATGGTCAAATGGGTCGGAAACTGAAAACGCATCGATAAATAACAAACAGTGTGCCGGAAAAGACTTCGTCGTACTGGTTTCAAGATTGTTGCTGGTCGAACTGTTCCTCCGATATGATTCGTTTGAGATTGAAGTCGGTGCATCTCCATTAGGAGCTGCAATTACCTTAACTTCTCTGAGAAGAGCCAGTTTTTGATGAACACTGGCTTAATTAAGAAATTAGTAATCTTGTTTAGTGTATTATATTTCATTGTTGTGTTATTAAGAAATAATTAATTTACAGAACAGAGCATGCCGGCCAGCCGGCGGCGGTAATTGAGGAAGAGGCCGGTGATGTGTATAGTTTAGTATAGTAAATATTTTTTGTTGAAAA............................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546395" ref_strand="+" ref_description="SGN-E546395 [TUS-69-L20]">
      <seq>gaacaaaagtcaagagttcaattcttgaatttttctaatagaaatggcatcaacttctctttctcttaagctacaattcccctcacatacatcatcatcttctcgtaaaaattcatcgtctcatcgtgttagtattcgtcccattcaggcttcggtgtctgagataccaccttacatttcatcaccatcaccatcaccaccaccggttaaacaagcgaaactcccagccagaaaagttcctggagattatggactaccattagttggtccatggaaagacagacttgattacttctacaatcagggcaaaaatgaatttttcaaatcaagaattcagaagcatcagtctactgtttttcgaacgaacatgccaccaggtccattcatttcattcaatccaaacgttgttgttttgctcgatggtaaaagtttccccatcctttttgatgtatctaaagttgaaaaaaaggatcttttcaccggtactttcatgccatccactgatctcacaggcggttatcgtgttctctcctatcttgatccttctgaacaaaacatgccaaattgaagaaactcatgttttatctcctttcatcacgacgcaatgaagttattccagagtttcacaatagctactccgagctatttgaaactctgggaaacgaacnntctcacgaaagtaaagctgggctcaatgcagcaaatgatcaagctgcatttaacttcctggctagatctttatatggcattaatccctcagacacgaacttggaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="64136" stop="65541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64436" g_stop="65236" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E546395" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64436" e_stop="65236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAGTCAAGAGTTCAATTCTTGATTTTTTTCTAATAGAAATGGCATCAACTTCTCTTTCTCTTCCTTCTCTTAAGCTACAATTCCCCTCGCATACATCATCATCTTCTCGTAAAAATTCATCGTCTTATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCATCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCAAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTAGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGAGTTCTATCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTC-CACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATGATCAAGCTGCATTTAACTTCCTGGCTAGGTCTTTATATGGCATTAATCCTCAAGACACCGAACTTGGAA</genome_strand>
        <mrna_strand>GAACAAAAGTCAAGAGTTCAATTCTTGA-ATTTTTCTAATAGAAATGGCATCAA-----C-TTCTC-T--TTCTCTTAAGCTACAATTCCCCTCACATACATCATCATCTTCTCGTAAAAATTCATCGTCTCATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCAT---CA-C-C-ATCA-C--CATCA----C--CACCACCGGTTAAACAAGCGAAACTCCCAGCCAGAAAAGTTCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTTTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTCGATGGTAAAAGTTTCCCCATCCTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGTGTTCTCTCCTATCTTGATCCTTCTGAA-CAAAACATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGGAAACGAACNNTCTCACGAAA-GTAAAGCTGGGCTCAATGCAGCAAATGATCAAGCTGCATTTAACTTCCTGGCTAGATCTTTATATGGCATTAATCCCTCAGACA-CGAACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358729" ref_strand="+" ref_description="SGN-E358729 [cLHT-24-C23]">
      <seq>aacaaaagtcaagagttcaattcttgaatttttctaatagaaatggcatcaacttctctttctcttaagctacaattcccctcacatacatcatcatcttctcgtaaaaattcatcgtctcatcgtgttagtattcgtcccattcaggcttcggtgtctgagataccaccttacatttcatcaccatcaccatcaccaccaccggttaaacaagcgaaactcccagccagaaaagttcctggagattatggactaccattagttggtccatggaaagacagacttgattacttctacaatcagggcaaaaatgaatttttcaaatcaagaattcagaagcatcagtctactgtttttcgaacgaacatgccaccaggtccattcatttcattcaatccaaacgttgttgttttgctcgatggtaaaagtttccccatcctttttgatgtatctaaagttgaaaaaaaggatcttttcaccggtactttcatgccatccactgatctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="64137" stop="65271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64971" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E358729" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.049" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAGTCAAGAGTTCAATTCTTGATTTTTTTCTAATAGAAATGGCATCAACTTCTCTTTCTCTTCCTTCTCTTAAGCTACAATTCCCCTCGCATACATCATCATCTTCTCGTAAAAATTCATCGTCTTATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCATCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCAAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTAGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACA</genome_strand>
        <mrna_strand>AACAAAAGTCAAGAGTTCAATTCTTGA-ATTTTTCTAATAGAAATGGCATCAA-----C-TTCTC-T--TTCTCTTAAGCTACAATTCCCCTCACATACATCATCATCTTCTCGTAAAAATTCATCGTCTCATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCAT---CA-C-C-ATCA-C--CATCA----C--CACCACCGGTTAAACAAGCGAAACTCCCAGCCAGAAAAGTTCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTTTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTCGATGGTAAAAGTTTCCCCATCCTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200761" ref_strand="+" ref_description="SGN-E200761 [cLEC-9-C14]">
      <seq>tcatcttctcgtaaaaattcatcgtcttatcgtgttagtattcgtcccattcaggcttcggtgtctgagataccaccttacatttcatcaccatcacaatcaccatcgtcatcggcatcaccacctgttaaacaagcgaaactcccagcccgaaaagtccctggagattatggactaccattagttggtccatggaaagacagacttgattacttctacaatcagggcaaaaatgaattcttcaaatcaagaattcagaagcatcagtctactgtttttcgaacgaacatgccaccaggtccattcatttcattcaatccaaacgttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="64240" stop="65169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64540" g_stop="64869" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E200761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64540" e_stop="64869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTCGTAAAAATTCATCGTCTTATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCATCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCAAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTT</genome_strand>
        <mrna_strand>TCATCTTCTCGTAAAAATTCATCGTCTTATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCGTCATCGGCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCGAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215025" ref_strand="+" ref_description="SGN-E215025 [cLEC-78-K21]">
      <seq>ttcaggcttcggtgtctgagataccaccttacatttcatcaccatcacaatcaccatcgtcatcgtcatcaccacctgttaaacaagcgaaactcccagcccgaaaagtccctggagattatggactaccattagttggtccatggaaagacagacttgattacttctacaatcagggcaaaaatgaattcttcaaatcaagaattcagaagcatcagtctactgtttttcgaacgaacatgccaccaggtccattcatttcattcaatccaaacgttgttgttttgctcgatggtaaaagtttccccgtactttttgatgtatctaaagttgaaaaaaaggatcttttcaccggtactttcatgccatccactgatctcacaggcggttatcgtgttctctcctatcttgatccttctgaaccaaaccatgccaaattgaagaaactcatgttttatctcctttcatcacgacgcaatgaagttattccagagtttcacaatagctactccgagctatttgaaactctggaaaacgaactctccacgaaaggtaaagctgggctcaatgcagcaaatgatcaagctgcatttaacttcctggctaggtctttatatggcattaatccntcagacaccgaancttggaaccgatggnnactagntgatcggaaaatgggtgctgttccagcttcatcctttgctaattctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="64289" stop="65599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64589" g_stop="65299" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E215025" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64589" e_stop="65299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCATCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCAAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTAGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGAGTTCTATCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTCCACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATGATCAAGCTGCATTTAACTTCCTGGCTAGGTCTTTATATGGCATTAATCCTCAAGACACCGAA-CTTGGAACCGATGGACCTAAGTTGATCGGAAAATGGGTGCTGTTCCAGCTTCATCCTTTGCTAATTCTCG</genome_strand>
        <mrna_strand>TTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCGTCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCGAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTCGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGTGTTCTCTCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTCCACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATGATCAAGCTGCATTTAACTTCCTGGCTAGGTCTTTATATGGCATTAATCCNTCAGACACCGAANCTTGGAACCGATGGNNACTAGNTGATCGGAAAATGGGTGCTGTTCCAGCTTCATCCTTTGCTAATTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203839" ref_strand="+" ref_description="SGN-E203839 [cLEC-17-I17]">
      <seq>attcttcaaatcaagaattcagaagcatcagtctactgtttttcgaacgaacatgccaccaggtccattcatttcattcaatccaaacgttgttgttttgctcgatggtaaaagtttccccgtactttttgatgtatctaaagttgaaaaaaaggatcttttcaccggtactttcatgccatccactgatctcacaggcggttatcgtgttctctcctatcttgatccttctgaaccaaaccatgccaaattgaagaaactcatgttttatctcctttcatcacgacgcaatgaagttattccagagtttcacaatagctactccgagctatttgaaactctggaaaacgaactctccacgaaaggtaaagctgggctcaatgcagcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="64476" stop="65467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64776" g_stop="65167" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E203839" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64776" e_stop="65167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTAGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGAGTTCTATCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTCCACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATG</genome_strand>
        <mrna_strand>ATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTCGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGTGTTCTCTCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTCCACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549364" ref_strand="+" ref_description="SGN-E549364 [TUS-69-L20](-)">
      <seq>taatgaaatcagtagtctacgaatccctcagaattgaaccctccggtagcatcacaatacggcagagcaaaacacgacatggtaattgaatcccatgacgcatcgttcgagatcaaagaaggtgaactcctttatgggtttcaaccgtttgcaactaaagacccaaaaatcttcgatcgatcggaagaattcgtcgccgatcggttcatcggagaagaaggggagaagctgttgaaacacgtgttatggtcaaatgggtcggaaacagagaacccatcgataaataacaaacagtgtgccggaaaagacttcgtcgtactggtttcaagattgttgttggtcgaattgttcctccgatatgattcgtttgagattgaagtcggtgcatctccattaggagctgcaattaccttaacttctctgagaagagccagtttttgatgaacactggcttaattaagtaattagtaatcttgtttagtgtattatatttcattgttgtgttactaagaaataattaatttacagaacagagcatgccggccggcggcggtaattgaggaagaggccggtgatgtgtatagtttagtatagtaattattttttgttggaaaatggaatgtgtaactatgttaatgatcaatgtaatatgttgttctcaataaatacaacagttaattcacccctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="65345" stop="66647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65645" g_stop="66345" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E549364" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65645" e_stop="66345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAAATCAGTAGTCTACGAATCCCTCAGAATTGAA-CCTCCGGTAGCATCACAATACGGCAGAGCAAAACACGACATGGTAATTGAATCCCACGACGCATCATTCGAAATCAAAGAAGGTGAACTCCTTTATGGGTATCAACCATTTGCAACTAAAGACCCAAAAATCTTCGATCGATCGGAAGAATTCGTCGCCGATCGGTTCATCGGAGAAGAAGGGGAGAAGCTGTTGAAACACGTGTTATGGTCAAATGGGTCGGAAACTGAAAACGCATCGATAAATAACAAACAGTGTGCCGGAAAAGACTTCGTCGTACTGGTTTCAAGATTGTTGCTGGTCGAACTGTTCCTCCGATATGATTCGTTTGAGATTGAAGTCGGTGCATCTCCATTAGGAGCTGCAATTACCTTAACTTCTCTGAGAAGAGCCAGTTTTTGATGAACACTGGCTTAATTAAGAAATTAGTAATCTTGTTTAGTGTATTATATTTCATTGTTGTGTTATTAAGAAATAATTAATTTACAGAACAGAGCATGCCGGCCAGCCGGCGGCGGTAATTGAGGAAGAGGCCGGTGATGTGTATAGTTTAGTATAGTAAATATTTTTTGTTGGAAAATGGAATGTGTAACTATGTTAATGATCAATGTAATATGTTGTTCTCAATAAATACAATAGATAATTCACCCCTCCAAATTATAT</genome_strand>
        <mrna_strand>TAATGAAATCAGTAGTCTACGAATCCCTCAGAATTGAACCCTCCGGTAGCATCACAATACGGCAGAGCAAAACACGACATGGTAATTGAATCCCATGACGCATCGTTCGAGATCAAAGAAGGTGAACTCCTTTATGGGTTTCAACCGTTTGCAACTAAAGACCCAAAAATCTTCGATCGATCGGAAGAATTCGTCGCCGATCGGTTCATCGGAGAAGAAGGGGAGAAGCTGTTGAAACACGTGTTATGGTCAAATGGGTCGGAAACAGAGAACCCATCGATAAATAACAAACAGTGTGCCGGAAAAGACTTCGTCGTACTGGTTTCAAGATTGTTGTTGGTCGAATTGTTCCTCCGATATGATTCGTTTGAGATTGAAGTCGGTGCATCTCCATTAGGAGCTGCAATTACCTTAACTTCTCTGAGAAGAGCCAGTTTTTGATGAACACTGGCTTAATTAAGTAATTAGTAATCTTGTTTAGTGTATTATATTTCATTGTTGTGTTACTAAGAAATAATTAATTTACAGAACAGAGCATGCC-G---GCCGGCGGCGGTAATTGAGGAAGAGGCCGGTGATGTGTATAGTTTAGTATAGTAATTATTTTTTGTTGGAAAATGGAATGTGTAACTATGTTAATGATCAATGTAATATGTTGTTCTCAATAAATACAACAGTTAATTCACCCCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359267" ref_strand="+" ref_description="SGN-E359267 [cLHT-31-I15]">
      <seq>ttttaattttatatacaagaaaataacagcaattattgtaccggccggaaaaatggaagtaactgtcggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccggtacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccgtcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgggagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcngaacggcggttcatcacgccatgtgtgatggaatgggatcgacgctgttttttcatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68691" stop="69857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68991" g_stop="69557" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E359267" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68991" e_stop="69557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTTATATATAAGAAAATAACAGCAATGATTGTACCGGCCGGAAAAATGGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTAT</genome_strand>
        <mrna_strand>TTTTAATTTTATATACAAGAAAATAACAGCAATTATTGTACCGGCCGGAAAAATGGAAGTAACTGTCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGGTACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCGTCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGGGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCNGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGATCGACGCTGTTTTTTCATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311858" ref_strand="+" ref_description="SGN-E311858 [cTOA-15-K18]">
      <seq>ttttaattttatatataagaaaataacagcaattattgtaccggccggaaaaatggaagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68691" stop="69768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68991" g_stop="69468" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E311858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68991" e_stop="69468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTTATATATAAGAAAATAACAGCAATGATTGTACCGGCCGGAAAAATGGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAAC</genome_strand>
        <mrna_strand>TTTTAATTTTATATATAAGAAAATAACAGCAATTATTGTACCGGCCGGAAAAATGGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355948" ref_strand="+" ref_description="SGN-E355948 [cLHT-21-L21]">
      <seq>ttttaattttatatacaagaaaataacagcaattattgtaccggccggaaaaatggaagtaactgtcggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccggtacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccgtcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggaggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68691" stop="69730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68991" g_stop="69430" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E355948" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68991" e_stop="69430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTTATATATAAGAAAATAACAGCAATGATTGTACCGGCCGGAAAAATGGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATG</genome_strand>
        <mrna_strand>TTTTAATTTTATATACAAGAAAATAACAGCAATTATTGTACCGGCCGGAAAAATGGAAGTAACTGTCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGGTACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCGTCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGAGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745318" ref_strand="+" ref_description="SGN-E745318 [GI|47105760]">
      <seq>gggccggaaaaatggaagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgctatggcggagattgctcgtggggagaaggggatgaagattgaaccggtgtgggaccggtcgaatttgcttggaccgaggaatccaccacgagttgaatttccggttcatgagttcctcagtttggatagggattcgtgtccatacttggaatcaggtaaatcggcagttcgagagtgctttgaggtgaaagatgagtggttggatagactaaaggggtttcttcatgagcaatctgcaggttcaaagtatacaacttttgaagctttgggagctttcatatggcgagcaaaggtaaaggcttgtaaaatgtcagatgatgagacagtgaagtatgcttatctaaccaatatcagaagaagagtgaagccaccattgccagcaggttactggggcaatggctgtgtgccaatatacgttcagctcctcgcaaaagacatcatcaatgaacctatctggaaagcagcagacgcgataaagaagagcaaggacatcatcacagatgagtatgttcgttcgttcattgattttcaggagctgcattatgttgaagggatcacatcagggaatagagtgagtgcatttacagattggcggcatgtaggccacgagacggttgattttggatggggtggccctgtgactgtctttcctctgtctagacacttagttgggagtgttgaaccttgctttttcttgccttattcttctgcaattcaaggtaagaaagatggtttcaaagttttggtctgtctgcaacaagaagccatgcctgttttcatggaagagatggaaaagttggagcatggacttgcttgattgattttactatatatatatgtgtgtgttatattaaactaataaaaacaacatttacaagtagagaccaaatttggcatatgtattactacattttcgactgctaaatgttctttcaagtaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68733" stop="70971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69032" g_stop="69845" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69846" i_stop="70007" i_length="162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70008" g_stop="70648" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="1455" r_length="641" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1462" polyA_stop="1480"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E745318" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1455</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69032" e_stop="69845"/>
          <exon e_start="70008" e_stop="70648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCGGAAAAATGGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAACTCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCAATCTGCAGGTTCAAAGTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAAGTATGTTCTCTTTTCATTTGTTTTTGTTATAGTTATACTGATAATCGAACTTTACACTCCTCAAGTCAAATGCTTCCTTGATCATTGTCATTTTGACATCATGGAAAGTTTTAGCTTATCTTGGCTATAGATATTTGTTTAATTTAATTTATGAAAGTGCAGGGTAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTGTTCTTCTAAAACTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCCGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATGTGTGTGTGTTATACTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTT</genome_strand>
        <mrna_strand>GGGCCGGAAAAATGGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAAATCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCAATCTGCAGGTTCAAAGTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAA..................................................................................................................................................................GGTAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGTTGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTATTCTTCTGCAATTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCTGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATATGTGTGTGTTATATTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541733" ref_strand="+" ref_description="SGN-E541733 [TUS-62-K20]">
      <seq>ggaagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgctatggcggagattgctcgtggggagaaggggatgaagattgaaccggtgtgggaccggtcgaatttgcttggaccgaggaatccaccacgagttgaatttccggttcatgagttcctcagtttggatagggattcgtgtccatacttggaatcangtaaatcggcagttcgagagtgctttgaggtgaaagatgagtggttggatagactaaaggggtttcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68745" stop="70081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69045" g_stop="69781" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E541733" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69045" e_stop="69781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAACTCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATG</genome_strand>
        <mrna_strand>GGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCANGTAAATCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541740" ref_strand="+" ref_description="SGN-E541740 [TUS-62-K24]">
      <seq>ggaagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgctatggcggagattgctcgtggggagaaggggatgaagattgaaccggtgtgggaccggtcgaatttgcttggaccgaggaatccaccacgagttgaatttccggttcatgagttcctcagtttggatagggattcgtgtccatacttggaatcaagtaaatcggcagttcgagagtgctttgaggtgaaagatgagtggttggatagactaaaggggtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68745" stop="70077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69045" g_stop="69777" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E541740" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69045" e_stop="69777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAACTCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTT</genome_strand>
        <mrna_strand>GGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAAGTAAATCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299798" ref_strand="+" ref_description="SGN-E299798 [cLEW-1-E23]">
      <seq>gaagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgctatggcggagattgctcgtggggagaaggggatgaagattgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68746" stop="69898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69046" g_stop="69598" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E299798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69046" e_stop="69598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAAC</genome_strand>
        <mrna_strand>GAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291568" ref_strand="+" ref_description="SGN-E291568 [cLET-6-K6]">
      <seq>gaagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68746" stop="69729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69046" g_stop="69429" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E291568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69046" e_stop="69429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGAT</genome_strand>
        <mrna_strand>GAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299805" ref_strand="+" ref_description="SGN-E299805 [cLEW-1-G15]">
      <seq>aagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgctatggcggagattgctcgtggggagaaggggatgaagattgaaccggtgtgggaccggtcgaatttgcttggaccgaggaatccaccacgagttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68747" stop="69951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69047" g_stop="69651" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E299805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69047" e_stop="69651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAA</genome_strand>
        <mrna_strand>AAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331008" ref_strand="+" ref_description="SGN-E331008 [cTOD-6-A9]">
      <seq>accggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgctatggcggagattgctcgtggggagaaggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68755" stop="69888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69055" g_stop="69588" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E331008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69055" e_stop="69588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATG</genome_strand>
        <mrna_strand>ACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200749" ref_strand="+" ref_description="SGN-E200749 [cLEC-9-M23]">
      <seq>cgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68760" stop="69854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69060" g_stop="69554" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E200749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69060" e_stop="69554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGC</genome_strand>
        <mrna_strand>CGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281647" ref_strand="+" ref_description="SGN-E281647 [cLER-14-D5]">
      <seq>taacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgtggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggttcgacgctgttttttcatgctatggcggagattgctcgtggggagaaggggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68766" stop="69889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69066" g_stop="69589" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E281647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69066" e_stop="69589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGA</genome_strand>
        <mrna_strand>TAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724258" ref_strand="+" ref_description="SGN-E724258 [FC23CC04]">
      <seq>ggtccctactaccctttaagggctctctccgccgtcgtccgtcggacaaccgtctatagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgactgtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgcggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggatcgacgctgttttttcatgctatggcggagattgctcgtggggagaaagggatgaagattgaaccggtgtgggaccggtcgaatttgcttggaccgaggaatcccccgcgagttgaatttccggttcatgagttcctcagtttggatagggattcgtgtccatacttggaatcaggtaaatcggcagttcgagagtgctttgaggtgaaagatgagtggttggatagactaaaggggtttcttcatgagcactcttcaggttcaaattatacaacttttgaagctttgggagctttcatatggcgagcaaaggcaaaggcttgtaaaatgtcagatgatgagacagtgaagtatgcttatctaaccaatatcagaagaagagtgaatccaccattgccagctggttactggggcaatggctgtgtgccaatatacgttcagctcctcgcaaaagacctcatcaatgaacctatctggaaagcagcagacgcgataaaaaagagcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68962" stop="70505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69240" g_stop="69845" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69846" i_stop="70007" i_length="162">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70008" g_stop="70205" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="802" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E724258" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69240" e_stop="69845"/>
          <exon e_start="70008" e_stop="70205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAACTCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCAATCTGCAGGTTCAAAGTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAAGTATGTTCTCTTTTCATTTGTTTTTGTTATAGTTATACTGATAATCGAACTTTACACTCCTCAAGTCAAATGCTTCCTTGATCATTGTCATTTTGACATCATGGAAAGTTTTAGCTTATCTTGGCTATAGATATTTGTTTAATTTAATTTATGAAAGTGCAGGGTAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGA</genome_strand>
        <mrna_strand>GGTCC-CTACTACCCTTT-AAGGGCTCTCTCCGCCGTCGTCCGTCGGACAACCGTCTATAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACTGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGCGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGATCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAAGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCCCCGCGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAAATCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCACTCTTCAGGTTCAAATTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAA..................................................................................................................................................................GGCAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAATCCACCATTGCCAGCTGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACCTCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAAAAGAGCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729495" ref_strand="+" ref_description="SGN-E729495 [LA21BA04]">
      <seq>gtccactactaccaattcgccggctctctccgccgtcgtccgtcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgactgtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagatgaggaggcgttgacccgacccttgattttgcaagtgaaccgttttaagtgcggtgggtgggttttcggaacggcggttcatcacgccatgtgtgatggaatgggatcgacgctgttttttcatgctatggcggagattgctcgtggggagaaagggatgaagattgaaccggtgtgggaccggtcgaatttgcttggaccgaggaatcccccgcgagttgaatttccggttcatgagttcctcagtttggatagggattcgtgtccatacttggaatcaggtaaatcggcagttcgagagtgctttgaggtgaaagatgagtggttggatagactaaaggggtttcttcatgagcactcttcaggttcaaattatacaacttttgaagctttgggagctttcatatggcgagcaaaggcaaaggcttgtaaaatgtcagatgatgagacagtgaagtatgcttatctaaccaatatcagaagaagagtgaagccaccattgccagctggttactggggcaatggctgtgtgccaatatacgttcagctcctcgcaaaagacctcatcaatgaacctatctggaaagcagcagacgcgataaagaagagcaaggacatcatcacagatgagtatgttcgttctttcattgattttcaggagctgcattatgatgaagggatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68941" stop="70575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69241" g_stop="69845" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69846" i_stop="70007" i_length="162">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70008" g_stop="70275" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="873" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E729495" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69241" e_stop="69845"/>
          <exon e_start="70008" e_stop="70275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAACTCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCAATCTGCAGGTTCAAAGTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAAGTATGTTCTCTTTTCATTTGTTTTTGTTATAGTTATACTGATAATCGAACTTTACACTCCTCAAGTCAAATGCTTCCTTGATCATTGTCATTTTGACATCATGGAAAGTTTTAGCTTATCTTGGCTATAGATATTTGTTTAATTTAATTTATGAAAGTGCAGGGTAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCACA</genome_strand>
        <mrna_strand>GTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCGTCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACTGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGCGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGATCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAAGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCCCCGCGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAAATCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCACTCTTCAGGTTCAAATTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAA..................................................................................................................................................................GGCAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCTGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACCTCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCTTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541730" ref_strand="+" ref_description="SGN-E541730 [TUS-62-K20](-)">
      <seq>gaggtgaaagatgagtgttggatagactaaaggggtttcttcatgagcaatctgcaggttcaaagtatacaacttttgaagctttgggagctttcatatggcgagcaaaggtaaaggcttgtaaaatgtcagatgatgagacagtgaagtatgcttatctaaccaatatcagaagaagagtgaagccaccattgccagcaggttactggggcaatggctgtgtgccaatatacgttcagctcctcgcaaaagacatcatcaatgaacctatctggaaagcagcagacgcgataaagaagagcaaggacatcatcacagatgagtatgttcgttcgttcattgattttcaggagctgcattatgttgaagggatcacatcagggaatagagtgagtgcatttacagattggcggcatgtaggccacgagacggttgattttggatggggtggccctgtgactgtctttcctctgtctagacacttagttgggagtgttgaaccttgctttttcttgccttattcttctgcaattcaaggtaagaaagatggtttcaaagttttggtctgtctgcaacaagaagccatgcctgttttcatggaagagatggaaaagttggagcatggacttgcttgattgattttactatatatatatgtgtgtgttatattaaactaataaaaacaacatttacaagtagagaccaaatttggcatatgtattactacattttcgactgctaaatgttctttcanagtaaattacaatgaagaanatgtaatcctttacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="69436" stop="70988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69736" g_stop="69845" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69846" i_stop="70007" i_length="162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70008" g_stop="70696" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="800" r_length="691" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E541730" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69736" e_stop="69845"/>
          <exon e_start="70008" e_stop="70696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCAATCTGCAGGTTCAAAGTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAAGTATGTTCTCTTTTCATTTGTTTTTGTTATAGTTATACTGATAATCGAACTTTACACTCCTCAAGTCAAATGCTTCCTTGATCATTGTCATTTTGACATCATGGAAAGTTTTAGCTTATCTTGGCTATAGATATTTGTTTAATTTAATTTATGAAAGTGCAGGGTAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTGTTCTTCTAAAACTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCCGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATGTGTGTGTGTTATACTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTTGTA-AGTAAATTACAATGAAGAA-ATGTAATCCTTTACATAATTTAACTA</genome_strand>
        <mrna_strand>GAGGTGAAAGATGAGTG-TTGGATAGACTAAAGGGGTTTCTTCATGAGCAATCTGCAGGTTCAAAGTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAA..................................................................................................................................................................GGTAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGTTGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTATTCTTCTGCAATTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCTGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATATGTGTGTGTTATATTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTTTCANAGTAAATTACAATGAAGAANATGTAATCCTTTACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338569" ref_strand="+" ref_description="SGN-E338569 [cTOE-15-A4]">
      <seq>tgaagccaccattgccagcaggttactggggcaatggctgtgtgccaatataccgttcagctcctcgcaaaagacatcatcaatgaacctatctggaaagcagcagacgccgataaagaagagcaaggacatcatcacagatgagtatgttcgttcgttcattgattttcaggagctgcattatgttgaagggatcaccatcagggaatagagtgagtgccatttaccagattggcggcatgtaggccacgagaccggttgattttggatggggtggccctgtgactgtctttcctctgtctagaccaccttagttgggagtgttgaaccttgctttttcttgccttattcttctgcaattcaaggtaagaaagatggtttcaaagttttggtctgtctgcaacaagaagccatgccctgttttcatggaagagatggaaaagttggagcatggaccttgcttgattgattttactatatatatatgtggtgttatattaaactaataaaaacaacatttacaagtagagacccaatttggcatatgtattactacattttcgactggctaatgttctttcaaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="69779" stop="70963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70079" g_stop="70648" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="596"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E338569" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70079" e_stop="70648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATA-CGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACG-CGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCA-CATCAGGGAATAGAGTGAGTG-CATTTA-CAGATTGGCGGCATGTAGGCCACGAGA-CGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGA-CA-CTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTGTTCTTCTAAAACTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCC-GTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGA-CTTGCTTGATTGATTTTACTATATATATGTGTGTGTGTTATACTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTT</genome_strand>
        <mrna_strand>TGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACCGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGTTGAAGGGATCACCATCAGGGAATAGAGTGAGTGCCATTTACCAGATTGGCGGCATGTAGGCCACGAGACCGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACCACCTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTATTCTTCTGCAATTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCCTGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACCTTGCTTGATTGATTTTACTATATATATATGTG-GTGTTATATTAAACTAATAAAAACAACATTTACAAGTAGAGACCCAATTTGGCATATGTATTACTACATTTTCGACTGGCTAATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299799" ref_strand="+" ref_description="SGN-E299799 [cLEW-1-E23](-)">
      <seq>tatacgttcagctcctcgcaaaagacatcatcaatgaacctatctggaaagcagcagacgcgataaagaagagcaaggacatcatcacagatgagtatgttcgttcgttcattgattttcaggagctgcattatgttgaagggatcacatcagggaatagagtgagtgcatttacagattggcggcatgtaggccacgagacggttgattttggatggggtggccctgtgactgtctttcctctgtctagacacttagttgggagtgttgaaccttgctttttcttgccttattcttctgcaattcaaggtaagaaagatggtttcaaagttttggtctgtctgcaacaagaagccatgcctgttttcatggaagagatggaaaagttggagcatggacttgcttgattgattttactatatatatatgtgtgtgttatattaaactaataaaaacaacatttacaagtagagaccaaatttggcatatgtattactacattttcgactgctaaatgttctttcaagtaaattacaatgaagaaatgtaatcctttacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="69827" stop="70988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70127" g_stop="70695" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E299799" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70127" e_stop="70695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTGTTCTTCTAAAACTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCCGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATGTGTGTGTGTTATACTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTTGTAAGTAAATTACAATGAAGAAATGTAATCCTTTACATAATTTAACT</genome_strand>
        <mrna_strand>TATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGTTGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTATTCTTCTGCAATTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCTGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATATGTGTGTGTTATATTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTTTCAAGTAAATTACAATGAAGAAATGTAATCCTTTACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541737" ref_strand="+" ref_description="SGN-E541737 [TUS-62-K24](-)">
      <seq>ggaaagcagcagacgcgataaagaagagcaaggacatcatcacagatgagtatgttcgttcgttcattgattttcaggagctgcattatgttgaagggatcacatcagggaatagagtgagtgcatttacagattggcggcatgtaggccacgagacggttgattttggatggggtggccctgtgactgtctttcctctgtctagacacttagttgggagtgttgaaccttgctttttcttgccttattcttctgcaattcaaggtaagaaagatggtttcaaagttttggtctgtctgcaacaagaagccatgcctgttttcatggaagagatggaaaagttggagcatggacttgcttgattgattttactatatatatatgtgtgtgttatattaaactaataaaaacaacatttacaagtagagaccaaatttggcatatgtattactacattttcgactgctaaatgttctttcaagtaaattacaatgaagaaatgtaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="69872" stop="70980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70172" g_stop="70680" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E541737" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70172" e_stop="70680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTGTTCTTCTAAAACTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCCGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATGTGTGTGTGTTATACTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTTGTAAGTAAATTACAATGAAGAAATGTAATCCT</genome_strand>
        <mrna_strand>GGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGTTGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTATTCTTCTGCAATTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCTGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATATGTGTGTGTTATATTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTTTCAAGTAAATTACAATGAAGAAATGTAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740701" ref_strand="+" ref_description="SGN-E740701 [LC22CB05]">
      <seq>tgcttcgctaatggttagtgtaggcctaatatgctgctttattcgacgaagattgaatttccaaaacagaagaagaagaagccgcgagttatgtgagactacagggatcagcatccccgtttatcagtacaaagaaatggaaaaagcaactgatttcttctctgagaaacggagactaggaaatggcgcgtatggaacagtttattctggaaaacttcaaactgacaattgggtagctatcaaaagaattagacacagagatactgatagcattgaacaattcatcaatgaaatcaagctcctttcctctgtcaatcatccaaacctcgttcgtctcttaggctgctcaatcgaaaatggtgaacagatacttgtttatgaatacatgcctaatgggactttgtcacaacatatacaaagagaaaaagggaacgggcttccatggcctgttcgtcttacaattggagcagaaactgcacaagctatagcttatttgcataatgcaatgcatcctccaatatatcacagagatgttaagtcaagtaatatactcttggattacaattacaagtcaaaagtagcagattttggactgtcaagactcggtttggttgaatcgtctcacatttctactgcaccacaaggaactccgggatatctagatcctcagtatcatcagaactttcagttgtctgataagagcgatgtttatagttttggtgttgttcttgctgagatcataacaggactaaaagcagtagactttgctcgtcctcaagacgaaataaacttggctgcacttgctattgatagaataggaaagggaaacttagatgaaatcatcgatccatttatcgagctacatatggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="72227" stop="70755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71927" g_stop="71055" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E740701" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71927" e_stop="71055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCGTTAATGGTTAGTGTAGGCCTAATATGCTGCTTTATTCGACGAAGATTGAATTTCCAAAACAGAACAAGAAGAAGCCGCGAGTTATGTGAGACTACAGGGATCAGCATCCCCGTTTATCAGTACAAAGAAATGGAAAAAGCAACTGATTTCTTCTCTGAGAAACGGAGACTAGGAAATGGCGCGTATGGAACAGTTTATTCTGGAAAACTTCAAACTGACAATTGGGTAGCTATCAAAAGAATTAGACACAGAGATACTGATAGCATTGAACAATTCATCAATGAAATCAAGCTCCTTTCCTCTGTCAATCATCCAAACCTCGTTCGTCTCTTAGGCTGCTCAATCGAAAATGGTGAACAGATACTTGTTTATGAATACATGCCTAATGGGACTTTGTCACAACATATACAAAGAGAAAAAGGGAACGGGCTTCCATGGCCTGTTCGTCTTACAATTGGTGCAGAAACTGCACAAGCTATAGCTTATTTGCATAATGCAATGCATCCTCCTATATATCACAGAGATGTTAAGTCAAGTAATATACTCTTGGATTACAATTACAAGTCAAAAGTAGCAGATTTTGGACTGTCAAGACTCGGTTTGGTTGAATCGTCTCACATTTCTACTGCACCACAAGGAACTCCGGGATATCTAGATCCTCAGTATCATCAGAACTTTCAGTTGTCTGATAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGCTGAGATCATAACAGGACTAAAAGCAGTAGACTTTGCTCGTCCTCAAGACGAAATAAACTTGGCTGCACTTGCTATTGACAGAATAGGAAAGGGAAACTTAGATGAAATTATCGATCCATTTATCGAGTTACATATGGATGC</genome_strand>
        <mrna_strand>TGCTTCGCTAATGGTTAGTGTAGGCCTAATATGCTGCTTTATTCGACGAAGATTGAATTTCCAAAACAGAAGAAGAAGAAGCCGCGAGTTATGTGAGACTACAGGGATCAGCATCCCCGTTTATCAGTACAAAGAAATGGAAAAAGCAACTGATTTCTTCTCTGAGAAACGGAGACTAGGAAATGGCGCGTATGGAACAGTTTATTCTGGAAAACTTCAAACTGACAATTGGGTAGCTATCAAAAGAATTAGACACAGAGATACTGATAGCATTGAACAATTCATCAATGAAATCAAGCTCCTTTCCTCTGTCAATCATCCAAACCTCGTTCGTCTCTTAGGCTGCTCAATCGAAAATGGTGAACAGATACTTGTTTATGAATACATGCCTAATGGGACTTTGTCACAACATATACAAAGAGAAAAAGGGAACGGGCTTCCATGGCCTGTTCGTCTTACAATTGGAGCAGAAACTGCACAAGCTATAGCTTATTTGCATAATGCAATGCATCCTCCAATATATCACAGAGATGTTAAGTCAAGTAATATACTCTTGGATTACAATTACAAGTCAAAAGTAGCAGATTTTGGACTGTCAAGACTCGGTTTGGTTGAATCGTCTCACATTTCTACTGCACCACAAGGAACTCCGGGATATCTAGATCCTCAGTATCATCAGAACTTTCAGTTGTCTGATAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGCTGAGATCATAACAGGACTAAAAGCAGTAGACTTTGCTCGTCCTCAAGACGAAATAAACTTGGCTGCACTTGCTATTGATAGAATAGGAAAGGGAAACTTAGATGAAATCATCGATCCATTTATCGAGCTACATATGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738997" ref_strand="+" ref_description="SGN-E738997 [LC15DA08]">
      <seq>cgtttcgctaatggttagtgtaggcctaatatgctgctttattcgacgaagattgaatttccaaaacagaagaagaagaagccgcgagttatgtgagactacagggatcagcatccccgtttatcagtacaaagaaatggaaaaagcaactgatttcttctctgagaaacggagactaggaaatggcgcgtatggaacagtttattctggaaaacttcaaactgacaattgggtagctatcaaaagaattagacacagagatactgatagcattgaacaattcatcaatgaaatcaagctcctttcctctgtcaatcatccaaacctcgttcgtctcttaggctgctcaatcgaaaatggtgaacagatacttgtttatgaatacatgcctaatgggactttgtcacaacatatacaaagagaaaaagggaacgggcttccatggcctgttcgtcttacaattggagcagaaactgcacaagctatagcttatttgcataatgcaatgcatcctccaatatatcacagagatgttaagtcaagtaatatactcttggattacaattacaagtcaaaagtagcagattttggactgtcaagactcggtttggttgaatcgtctcacatttctactgcaccacaaggaactccgggatatctagatcctcagtatcatcagaactttcagttgtctgataagagcgatgtttatagttttggtgttgttcttgctgagatcataacaggactaaaagcagtagactttgctcgtcctcaagacgaaataaacttggctgcacttgctattgatagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="72226" stop="70812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71927" g_stop="71112" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E738997" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71927" e_stop="71112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCGTTAATGGTTAGTGTAGGCCTAATATGCTGCTTTATTCGACGAAGATTGAATTTCCAAAACAGAACAAGAAGAAGCCGCGAGTTATGTGAGACTACAGGGATCAGCATCCCCGTTTATCAGTACAAAGAAATGGAAAAAGCAACTGATTTCTTCTCTGAGAAACGGAGACTAGGAAATGGCGCGTATGGAACAGTTTATTCTGGAAAACTTCAAACTGACAATTGGGTAGCTATCAAAAGAATTAGACACAGAGATACTGATAGCATTGAACAATTCATCAATGAAATCAAGCTCCTTTCCTCTGTCAATCATCCAAACCTCGTTCGTCTCTTAGGCTGCTCAATCGAAAATGGTGAACAGATACTTGTTTATGAATACATGCCTAATGGGACTTTGTCACAACATATACAAAGAGAAAAAGGGAACGGGCTTCCATGGCCTGTTCGTCTTACAATTGGTGCAGAAACTGCACAAGCTATAGCTTATTTGCATAATGCAATGCATCCTCCTATATATCACAGAGATGTTAAGTCAAGTAATATACTCTTGGATTACAATTACAAGTCAAAAGTAGCAGATTTTGGACTGTCAAGACTCGGTTTGGTTGAATCGTCTCACATTTCTACTGCACCACAAGGAACTCCGGGATATCTAGATCCTCAGTATCATCAGAACTTTCAGTTGTCTGATAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGCTGAGATCATAACAGGACTAAAAGCAGTAGACTTTGCTCGTCCTCAAGACGAAATAAACTTGGCTGCACTTGCTATTGACAGAAT</genome_strand>
        <mrna_strand>CGTTTCGCTAATGGTTAGTGTAGGCCTAATATGCTGCTTTATTCGACGAAGATTGAATTTCCAAAACAGAAGAAGAAGAAGCCGCGAGTTATGTGAGACTACAGGGATCAGCATCCCCGTTTATCAGTACAAAGAAATGGAAAAAGCAACTGATTTCTTCTCTGAGAAACGGAGACTAGGAAATGGCGCGTATGGAACAGTTTATTCTGGAAAACTTCAAACTGACAATTGGGTAGCTATCAAAAGAATTAGACACAGAGATACTGATAGCATTGAACAATTCATCAATGAAATCAAGCTCCTTTCCTCTGTCAATCATCCAAACCTCGTTCGTCTCTTAGGCTGCTCAATCGAAAATGGTGAACAGATACTTGTTTATGAATACATGCCTAATGGGACTTTGTCACAACATATACAAAGAGAAAAAGGGAACGGGCTTCCATGGCCTGTTCGTCTTACAATTGGAGCAGAAACTGCACAAGCTATAGCTTATTTGCATAATGCAATGCATCCTCCAATATATCACAGAGATGTTAAGTCAAGTAATATACTCTTGGATTACAATTACAAGTCAAAAGTAGCAGATTTTGGACTGTCAAGACTCGGTTTGGTTGAATCGTCTCACATTTCTACTGCACCACAAGGAACTCCGGGATATCTAGATCCTCAGTATCATCAGAACTTTCAGTTGTCTGATAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGCTGAGATCATAACAGGACTAAAAGCAGTAGACTTTGCTCGTCCTCAAGACGAAATAAACTTGGCTGCACTTGCTATTGATAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315343" ref_strand="+" ref_description="SGN-E315343 [cTOA-24-F18]">
      <seq>gaagattgaatttccaaaacagaacaagaagaagccgcgagttatgtgagactacagggatcagcatccccgtttatcagtacaaagaaatggaaaaagcaactgatttcttctctgagaaacggagactaggaaatggcgcgtatggaacagtttattctggaaaacttcaaactgacaattgggtagctatcaaaagaattagacacagagatactgatagcattgaacaattcatcaatgaaatcaagctcctttcctctgtcaatcatccaaacctcgttcgtctcttaggctgctcaatcgaaaatggtgaacagatacttgtttatgaatacatgcctaatgggactttgtcacaacatatacaaagagaaaaagggaacgggcttccatggcctgttcgtcttacaattggtgcagaaactgcacaagctatagcttatttgcataatgcaatgcatcctcctatatatcacagagatgttaagtcaagtaatatactcttggattacaattacaagtcaaaagtagcagattttggactgtcaagactcggtttggttgaatcgtctcacatttctactgcaccacaaggaactccgggatatctagatcctcagtatcatcagaactttcagttgtctgataagagcgatgtttatagttttggtgttgttcttgctgagatcataacaggactaaaagcagtagactttgctcgtccctcagacgaaataaacttggctgcacttgctattgacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="72180" stop="70814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71880" g_stop="71114" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E315343" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71880" e_stop="71114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTGAATTTCCAAAACAGAACAAGAAGAAGCCGCGAGTTATGTGAGACTACAGGGATCAGCATCCCCGTTTATCAGTACAAAGAAATGGAAAAAGCAACTGATTTCTTCTCTGAGAAACGGAGACTAGGAAATGGCGCGTATGGAACAGTTTATTCTGGAAAACTTCAAACTGACAATTGGGTAGCTATCAAAAGAATTAGACACAGAGATACTGATAGCATTGAACAATTCATCAATGAAATCAAGCTCCTTTCCTCTGTCAATCATCCAAACCTCGTTCGTCTCTTAGGCTGCTCAATCGAAAATGGTGAACAGATACTTGTTTATGAATACATGCCTAATGGGACTTTGTCACAACATATACAAAGAGAAAAAGGGAACGGGCTTCCATGGCCTGTTCGTCTTACAATTGGTGCAGAAACTGCACAAGCTATAGCTTATTTGCATAATGCAATGCATCCTCCTATATATCACAGAGATGTTAAGTCAAGTAATATACTCTTGGATTACAATTACAAGTCAAAAGTAGCAGATTTTGGACTGTCAAGACTCGGTTTGGTTGAATCGTCTCACATTTCTACTGCACCACAAGGAACTCCGGGATATCTAGATCCTCAGTATCATCAGAACTTTCAGTTGTCTGATAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGCTGAGATCATAACAGGACTAAAAGCAGTAGACTTTGCTCGTCCTCAAGACGAAATAAACTTGGCTGCACTTGCTATTGACAGA</genome_strand>
        <mrna_strand>GAAGATTGAATTTCCAAAACAGAACAAGAAGAAGCCGCGAGTTATGTGAGACTACAGGGATCAGCATCCCCGTTTATCAGTACAAAGAAATGGAAAAAGCAACTGATTTCTTCTCTGAGAAACGGAGACTAGGAAATGGCGCGTATGGAACAGTTTATTCTGGAAAACTTCAAACTGACAATTGGGTAGCTATCAAAAGAATTAGACACAGAGATACTGATAGCATTGAACAATTCATCAATGAAATCAAGCTCCTTTCCTCTGTCAATCATCCAAACCTCGTTCGTCTCTTAGGCTGCTCAATCGAAAATGGTGAACAGATACTTGTTTATGAATACATGCCTAATGGGACTTTGTCACAACATATACAAAGAGAAAAAGGGAACGGGCTTCCATGGCCTGTTCGTCTTACAATTGGTGCAGAAACTGCACAAGCTATAGCTTATTTGCATAATGCAATGCATCCTCCTATATATCACAGAGATGTTAAGTCAAGTAATATACTCTTGGATTACAATTACAAGTCAAAAGTAGCAGATTTTGGACTGTCAAGACTCGGTTTGGTTGAATCGTCTCACATTTCTACTGCACCACAAGGAACTCCGGGATATCTAGATCCTCAGTATCATCAGAACTTTCAGTTGTCTGATAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGCTGAGATCATAACAGGACTAAAAGCAGTAGACTTTGCTCGTCCCTCAGACGAAATAAACTTGGCTGCACTTGCTATTGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211849" ref_strand="+" ref_description="SGN-E211849 [cLEC-66-H8]">
      <seq>ttcacatgtcctcaaaaacatgaattttcctctccattttacaacaattctctgtttgtttattctcaagttttcatcaaacacagttcttggatcaaactgtacccattcatgtggaaacagattccttccatttccttttggtttctcccatggctgcccaattcagcttaactgtacctcaaatgaagaaattttcatgaaagatttcccagttcaatcagtaacttcagataccattttaatcaatcttttagcaaaatgcagccgaccattttcagcaattcacaatctttttagcccaaattacgcacccacttcaaaaaacggtatacttttccagaattgcagttcttcacagtctagctgtttgattccatctacgatgatacaaacccattttgacattcttgattgtggtaaagaaaacatgagctgttattctgagccgaatagtgagaacaatttcatcaatttgaagaatttgtcgaaaacagggtgtggctctctgttttctgcaatttctgtggagtcgacggtgaatagctcggctgtttcgttggatgttcagatggttcaattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="74930" stop="73746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74630" g_stop="74046" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E211849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74630" e_stop="74046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACATGTCCTCAAAAACATGAATTTTCCTCTCCATTTTACAACAATTCTCTGTTTGTTTATTCTCAAGTTTTCATCAAACACAGTTCTTGGATCAAACTGTACCCATTCATGTGGAAACAGATTCCTTCCATTTCCTTTTGGTTTCTCCCATGGCTGCCCAATTCAGCTTAACTGTACCTCAAATGAAGAAATTTTCATGAAAGATTTCCCAGTTCAATCAGTAACTTCAGATACCATTTTAATCAATCTTTTAGCAAAATGCAGCCGACCATTTTCAGCAATTCACAATCTTTTTAGCCCAAATTACGCACCCACTTCAAAAAACGGTATACTTTTCCAGAATTGCAGTTCTTCACAGTCTAGCTGTTTGATTCCATCTACGATGATACAAACCCATTTTGACATTCTTGATTGTGGTAAAGAAAACATGAGCTGTTATTCTGAGCCGAATAGTGAGAACAATTTCATCAATTTGAAGAATTTGTCGAAAACAGGGTGTGGCTCTCTGTTTTCTGCAATTTCTGTGGAGTCGACGGTGAATAGCTCGGCTGTTTCGTTGGATGTTCAGATGGTTCAATTGGG</genome_strand>
        <mrna_strand>TTCACATGTCCTCAAAAACATGAATTTTCCTCTCCATTTTACAACAATTCTCTGTTTGTTTATTCTCAAGTTTTCATCAAACACAGTTCTTGGATCAAACTGTACCCATTCATGTGGAAACAGATTCCTTCCATTTCCTTTTGGTTTCTCCCATGGCTGCCCAATTCAGCTTAACTGTACCTCAAATGAAGAAATTTTCATGAAAGATTTCCCAGTTCAATCAGTAACTTCAGATACCATTTTAATCAATCTTTTAGCAAAATGCAGCCGACCATTTTCAGCAATTCACAATCTTTTTAGCCCAAATTACGCACCCACTTCAAAAAACGGTATACTTTTCCAGAATTGCAGTTCTTCACAGTCTAGCTGTTTGATTCCATCTACGATGATACAAACCCATTTTGACATTCTTGATTGTGGTAAAGAAAACATGAGCTGTTATTCTGAGCCGAATAGTGAGAACAATTTCATCAATTTGAAGAATTTGTCGAAAACAGGGTGTGGCTCTCTGTTTTCTGCAATTTCTGTGGAGTCGACGGTGAATAGCTCGGCTGTTTCGTTGGATGTTCAGATGGTTCAATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724421" ref_strand="+" ref_description="SGN-E724421 [FC24AC08]">
      <seq>gattcctcctccactccatcaattttctcctcatctccatttttctccctttgccttttctctctcattctccttttgtccaaaaaaattcaaaaatttaaattcataacaaaaaaaggccagtaaaattactagtttaacctcaaatgttagttgaaacttgtccctacagtaacaactaatttaattttgtataccaatacttttctaaacatcatggtacactccatgcccaacatgtcgtcaactgctgtgatggacgacgatgattttgacgtccgtcacagcagtttctcggcttatgacccgaatcgccttagcgaaaacgggtcccctcccatgttgtctccatggaaccaaacttgttccccttttactaaatcctcttggcataacttggatgataattttccaaaaaatttgccacaaaatggactcattggttcccttgttcgtgaagaaggacatatttattctttagctgcaaagaatgatattctttatactggatccgatagcaaaaacatacgtgtttggaaagatatgaaggaattttcagcttttaaatcaaatagcggtcttgttaaagctattatcatcgccggagagaagatattcaccggtcatcaaaatggaaaagttcgagtttggaaggttcgatccaaaaaccctaacaaccataaacgtgctgggagtttgccaaaactcatggaccttttcaaggcttccattaaacctagcaactacgtagaggtcaaacgtaatcggaccactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="95275" stop="96895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95574" g_stop="96321" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96322" i_stop="96570" i_length="249">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96571" g_stop="96595" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="778" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E724421" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95574" e_stop="96321"/>
          <exon e_start="96571" e_stop="96595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTCCTTCACTTCAACAATTTTCTCCTCATCTCCATTTTTCTCCCTTTGCTTTTTCTCTCTCATTCTCCTTTTGTCCAAAAAAATT--TGAATTTATAACCA-AA-AAAAAAAGG-CAATAAAATTACTAGTTTAACCTCAAATGTTAGTTGAAACTTGTCCCTATAGTAACAACTAATTTAATTTTGTATACCAACATTTTTCTAAACATCATGGTACACTCCATGCCCAACATGTCGTCAATTGCTGTGATGGACGACGATGATTTTGACGTCCGTCACAGCAGTTTCTCGGCTTATGACCCGAATCGCCTTAGTGAAGACGGGTCACCTCCCATGTTGTCTCCATGGAACCAAACTTGTTCCCCTTTTACTAAATCCTCTTGGCATAACTTGGATGATAATTTTCCAAAAAATTTGCCACAAAATGGACTCATTGGTTCCCTTGTTCGTGAAGAAGGACATATTTATTCTTTAGCTGCAAAGAATGATATTCTTTATACTGGTTCCGATAGCAAAAACATACGTGTTTGGAAAGATATGAAGGAATTTTCAGCTTTTAAATCAAATAGCGGTCTTGTTAAAGCTATTATCATCGCTGGAGAGAAGATATTCACCGGTCATCAAGATGGAAAAGTTCGAGTTTGGAAGGTTCAATCCAAACACCCTAACAACCATAAACGTGCTGGGAGTTTGCCAAAACTCATGGACCTTTTCAAGGCTTCCATTAAACCTAGCAACTACGTAGAGGTAAATATTTACTTCTTTGACTCTACGTTTCATTTTATACGACACATTTTTTCTAAAATTCTATGTAAGAAATATACTTTTTTTTTCAATGACCTTTCATAACTTATTCATCTGATTCTTTTTTATGGGTCAGTCAAAAAAATGTGTAAGGACATGATTTTTTTCTAGGGTAATGAGATTTGAATCGAAATCTGAGTCTATAATGTTATATTTTACGTGACTAAATATAATTATATTATGTCTAAACAGGTAAAACGTAATCGGACCACTCTTT</genome_strand>
        <mrna_strand>GATTCCTCCTCCACTCCATCAATTTTCTCCTCATCTCCATTTTTCTCCCTTTGCCTTTTCTCTCTCATTCTCCTTTTGTCCAAAAAAATTCAAAAATTTAAATTCATAACAAAAAAAGGCCAGTAAAATTACTAGTTTAACCTCAAATGTTAGTTGAAACTTGTCCCTACAGTAACAACTAATTTAATTTTGTATACCAATACTTTTCTAAACATCATGGTACACTCCATGCCCAACATGTCGTCAACTGCTGTGATGGACGACGATGATTTTGACGTCCGTCACAGCAGTTTCTCGGCTTATGACCCGAATCGCCTTAGCGAAAACGGGTCCCCTCCCATGTTGTCTCCATGGAACCAAACTTGTTCCCCTTTTACTAAATCCTCTTGGCATAACTTGGATGATAATTTTCCAAAAAATTTGCCACAAAATGGACTCATTGGTTCCCTTGTTCGTGAAGAAGGACATATTTATTCTTTAGCTGCAAAGAATGATATTCTTTATACTGGATCCGATAGCAAAAACATACGTGTTTGGAAAGATATGAAGGAATTTTCAGCTTTTAAATCAAATAGCGGTCTTGTTAAAGCTATTATCATCGCCGGAGAGAAGATATTCACCGGTCATCAAAATGGAAAAGTTCGAGTTTGGAAGGTTCGATCCAAAAACCCTAACAACCATAAACGTGCTGGGAGTTTGCCAAAACTCATGGACCTTTTCAAGGCTTCCATTAAACCTAGCAACTACGTAGAG.........................................................................................................................................................................................................................................................GTCAAACGTAATCGGACCACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740414" ref_strand="+" ref_description="SGN-E740414 [LC21BC07]">
      <seq>cacctattttctcctcatctccatttttctccctttgccttttctctctcattctccttttgtccaaaaaaattcaaaaatttaaattcataacaaaaaaaggccagtaaaattactagtttaacctcaaatgttagttgaaacttgtccctacagtaacaactaatttaattttgtataccaatacttttctaaacatcatggtacactccatgcccaacatgtcgtcaactgctgtgatggacgacgatgattttgacgtccgtcacagcagtttctcggcttatgacccgaatcgccttagcgaagacgggtcccctcccatgttgtctccatggaaccaaacttgttccccttttactaaatcctcttggcataacttggatgataattttccaaaaaatttgccacaaaatggactcattggttcccttgttcgtgaagaaggacatatttattctttagctgcaaagaatgatattctttatactggatccgatagcaaaaacatacgtgtttggaaagatatgaaggaattttcagcttttaaatcaaatagcggtcttgttaaagctattatcatcgccggagagaagatattcaccggtcatcaagatggaaaagttcgagtttggaaggttcgatccaaaaaccctaacaaccataaacgtgctgggagtttgccaaaactcatggaccttttcaaggcttccattaaacctagcaactacgtagaggtcaaacgtaatcggaccactctttggattaagcattgtgacgcaatttcatgtttaagcatggaccatagtgaaggcctactctactcagcttcatgggatagaacgtttaaagtatggaaagttgataaatccaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="95290" stop="97011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95590" g_stop="96321" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96322" i_stop="96570" i_length="249">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96571" g_stop="96711" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="878" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E740414" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95590" e_stop="96321"/>
          <exon e_start="96571" e_stop="96711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATTTTCTCCTCATCTCCATTTTTCTCCCTTTGCTTTTTCTCTCTCATTCTCCTTTTGTCCAAAAAAATT--TGAATTTATAACCA-AA-AAAAAAAGG-CAATAAAATTACTAGTTTAACCTCAAATGTTAGTTGAAACTTGTCCCTATAGTAACAACTAATTTAATTTTGTATACCAACATTTTTCTAAACATCATGGTACACTCCATGCCCAACATGTCGTCAATTGCTGTGATGGACGACGATGATTTTGACGTCCGTCACAGCAGTTTCTCGGCTTATGACCCGAATCGCCTTAGTGAAGACGGGTCACCTCCCATGTTGTCTCCATGGAACCAAACTTGTTCCCCTTTTACTAAATCCTCTTGGCATAACTTGGATGATAATTTTCCAAAAAATTTGCCACAAAATGGACTCATTGGTTCCCTTGTTCGTGAAGAAGGACATATTTATTCTTTAGCTGCAAAGAATGATATTCTTTATACTGGTTCCGATAGCAAAAACATACGTGTTTGGAAAGATATGAAGGAATTTTCAGCTTTTAAATCAAATAGCGGTCTTGTTAAAGCTATTATCATCGCTGGAGAGAAGATATTCACCGGTCATCAAGATGGAAAAGTTCGAGTTTGGAAGGTTCAATCCAAACACCCTAACAACCATAAACGTGCTGGGAGTTTGCCAAAACTCATGGACCTTTTCAAGGCTTCCATTAAACCTAGCAACTACGTAGAGGTAAATATTTACTTCTTTGACTCTACGTTTCATTTTATACGACACATTTTTTCTAAAATTCTATGTAAGAAATATACTTTTTTTTTCAATGACCTTTCATAACTTATTCATCTGATTCTTTTTTATGGGTCAGTCAAAAAAATGTGTAAGGACATGATTTTTTTCTAGGGTAATGAGATTTGAATCGAAATCTGAGTCTATAATGTTATATTTTACGTGACTAAATATAATTATATTATGTCTAAACAGGTAAAACGTAATCGGACCACTCTTTGGATTAAGCATTGTGACGCAATTTCATGTTTAAGCATGGACCATAGTGAAGGCCTACTCTACTCAGCTTCATGGGATAGAACATTTAAAGTATGGAAAGTTGATAAATCCAAATGT</genome_strand>
        <mrna_strand>CACCTATTTTCTCCTCATCTCCATTTTTCTCCCTTTGCCTTTTCTCTCTCATTCTCCTTTTGTCCAAAAAAATTCAAAAATTTAAATTCATAACAAAAAAAGGCCAGTAAAATTACTAGTTTAACCTCAAATGTTAGTTGAAACTTGTCCCTACAGTAACAACTAATTTAATTTTGTATACCAATACTTTTCTAAACATCATGGTACACTCCATGCCCAACATGTCGTCAACTGCTGTGATGGACGACGATGATTTTGACGTCCGTCACAGCAGTTTCTCGGCTTATGACCCGAATCGCCTTAGCGAAGACGGGTCCCCTCCCATGTTGTCTCCATGGAACCAAACTTGTTCCCCTTTTACTAAATCCTCTTGGCATAACTTGGATGATAATTTTCCAAAAAATTTGCCACAAAATGGACTCATTGGTTCCCTTGTTCGTGAAGAAGGACATATTTATTCTTTAGCTGCAAAGAATGATATTCTTTATACTGGATCCGATAGCAAAAACATACGTGTTTGGAAAGATATGAAGGAATTTTCAGCTTTTAAATCAAATAGCGGTCTTGTTAAAGCTATTATCATCGCCGGAGAGAAGATATTCACCGGTCATCAAGATGGAAAAGTTCGAGTTTGGAAGGTTCGATCCAAAAACCCTAACAACCATAAACGTGCTGGGAGTTTGCCAAAACTCATGGACCTTTTCAAGGCTTCCATTAAACCTAGCAACTACGTAGAG.........................................................................................................................................................................................................................................................GTCAAACGTAATCGGACCACTCTTTGGATTAAGCATTGTGACGCAATTTCATGTTTAAGCATGGACCATAGTGAAGGCCTACTCTACTCAGCTTCATGGGATAGAACGTTTAAAGTATGGAAAGTTGATAAATCCAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736435" ref_strand="+" ref_description="SGN-E736435 [LC05DA09]">
      <seq>caacaattttctcctcatctccatttttctccctttgccttttctctctcattctccttttgtccaaaaaaattcaaaaatttaaattcataacaaaaaaaggccagtaaaattactagtttaacctcaaatgttagttgaaacttgtccctacagtaacaactaatttaattttgtataccaatacttttctaaacatcatggtacactccatgcccaacatgtcgtcaactgctgtgatggacgacgatgattttgacgtccgtcacagcagtttctcggcttatgacccgaatcgccttagcgaagacgggtcccctcccatgttgtctccatggaaccaaacttgttccccttttactaaatcctcttggcataacttggatgataattttccaaaaaatttgccacaaaatggactcattggttcccttgttcgtgaagaaggacatatttattctttagctgcaaagaatgatattctttatactggatccgatagcaaaaacatacgtgtttggaaagatatgaaggaattttcagcttttaaatcaaatagcggtcttgttaaagctattatcatcgccggagagaagatattcaccggtcatcaagatggaaaagttcgagtttggaaggttcgatccaaaaaccctaacaaccataaacgtgctgggagtttgccaaaactcatggaccttttcaaggcttccattanacctagcaactacgtagaggtcaaacgtaatcggaccactctttggattaagcattgtgacgcaatttcatgtttaagcatggaccatagtgaaggcctactctactcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="95290" stop="96963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95590" g_stop="96321" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96322" i_stop="96570" i_length="249">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96571" g_stop="96663" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="830" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-E736435" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95590" e_stop="96321"/>
          <exon e_start="96571" e_stop="96663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATTTTCTCCTCATCTCCATTTTTCTCCCTTTGCTTTTTCTCTCTCATTCTCCTTTTGTCCAAAAAAATTTGA--ATTTATAACCA-AA-AAAAAAAGGCAA-TAAAATTACTAGTTTAACCTCAAATGTTAGTTGAAACTTGTCCCTATAGTAACAACTAATTTAATTTTGTATACCAACATTTTTCTAAACATCATGGTACACTCCATGCCCAACATGTCGTCAATTGCTGTGATGGACGACGATGATTTTGACGTCCGTCACAGCAGTTTCTCGGCTTATGACCCGAATCGCCTTAGTGAAGACGGGTCACCTCCCATGTTGTCTCCATGGAACCAAACTTGTTCCCCTTTTACTAAATCCTCTTGGCATAACTTGGATGATAATTTTCCAAAAAATTTGCCACAAAATGGACTCATTGGTTCCCTTGTTCGTGAAGAAGGACATATTTATTCTTTAGCTGCAAAGAATGATATTCTTTATACTGGTTCCGATAGCAAAAACATACGTGTTTGGAAAGATATGAAGGAATTTTCAGCTTTTAAATCAAATAGCGGTCTTGTTAAAGCTATTATCATCGCTGGAGAGAAGATATTCACCGGTCATCAAGATGGAAAAGTTCGAGTTTGGAAGGTTCAATCCAAACACCCTAACAACCATAAACGTGCTGGGAGTTTGCCAAAACTCATGGACCTTTTCAAGGCTTCCATTAAACCTAGCAACTACGTAGAGGTAAATATTTACTTCTTTGACTCTACGTTTCATTTTATACGACACATTTTTTCTAAAATTCTATGTAAGAAATATACTTTTTTTTTCAATGACCTTTCATAACTTATTCATCTGATTCTTTTTTATGGGTCAGTCAAAAAAATGTGTAAGGACATGATTTTTTTCTAGGGTAATGAGATTTGAATCGAAATCTGAGTCTATAATGTTATATTTTACGTGACTAAATATAATTATATTATGTCTAAACAGGTAAAACGTAATCGGACCACTCTTTGGATTAAGCATTGTGACGCAATTTCATGTTTAAGCATGGACCATAGTGAAGGCCTACTCTACTCAGCT</genome_strand>
        <mrna_strand>CAACAATTTTCTCCTCATCTCCATTTTTCTCCCTTTGCCTTTTCTCTCTCATTCTCCTTTTGTCCAAAAAAATTCAAAAATTTAAATTCATAACAAAAAAAGGCCAGTAAAATTACTAGTTTAACCTCAAATGTTAGTTGAAACTTGTCCCTACAGTAACAACTAATTTAATTTTGTATACCAATACTTTTCTAAACATCATGGTACACTCCATGCCCAACATGTCGTCAACTGCTGTGATGGACGACGATGATTTTGACGTCCGTCACAGCAGTTTCTCGGCTTATGACCCGAATCGCCTTAGCGAAGACGGGTCCCCTCCCATGTTGTCTCCATGGAACCAAACTTGTTCCCCTTTTACTAAATCCTCTTGGCATAACTTGGATGATAATTTTCCAAAAAATTTGCCACAAAATGGACTCATTGGTTCCCTTGTTCGTGAAGAAGGACATATTTATTCTTTAGCTGCAAAGAATGATATTCTTTATACTGGATCCGATAGCAAAAACATACGTGTTTGGAAAGATATGAAGGAATTTTCAGCTTTTAAATCAAATAGCGGTCTTGTTAAAGCTATTATCATCGCCGGAGAGAAGATATTCACCGGTCATCAAGATGGAAAAGTTCGAGTTTGGAAGGTTCGATCCAAAAACCCTAACAACCATAAACGTGCTGGGAGTTTGCCAAAACTCATGGACCTTTTCAAGGCTTCCATTANACCTAGCAACTACGTAGAG.........................................................................................................................................................................................................................................................GTCAAACGTAATCGGACCACTCTTTGGATTAAGCATTGTGACGCAATTTCATGTTTAAGCATGGACCATAGTGAAGGCCTACTCTACTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697642" ref_strand="+" ref_description="SGN-E697642 [FA03CG03]">
      <seq>ggagtaatgaggacgaaggaataaataaggctcacatagcaattcgaagatttttcgaattgttaggagcttttgttgtggctgattttttaccttatttaagatggctggacattggaggccatgagaaagcgatgaaagagatttctgaagaaatggactctgttgttgaagaatggttaacagagcacaaaacaaagagaggaattattaaatctggtgaagaagaagatttcatggatgtaatgctttccaaatgtgaagacagagatctgcctggatttgatgccgatactgctataaaagctaattgcatgggtctactatcggcaggtacagacaccaccatcgtaactttaacatgggctttatgtttactcttgaacaactacgaagcactaaaaaaggctcaagatgagctagacgctcatgttggcaagaatagatgggtccaagaatcggatatcaagaacttggtttatcttcaacctgttgtcaaagaagtattacgtttatatccagctgggccgctctctgtaccacacgagtcaagggaggattgtgttattgggggatacgatataccaaaagggactcgcttattagtgaacttatggaagattcagcacgatcctaatatatggccaaatcctcacgagtttaagccagagaggttcttgtcgacccacaaggatgtggatgtaaagggaaatcactttgagttaatgccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="122796" stop="107507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108620" g_stop="108304" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108303" i_stop="108225" i_length="79">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108224" g_stop="107807" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="735" r_length="418" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E697642" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108620" e_stop="108304"/>
          <exon e_start="108224" e_stop="107807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTAACGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACATGTATGGTACGTTACTTCTGATCAAATTACTCTAAAATTGTATGATCACGTATATGGTTCCGATTGTTGAATTTGTCTTGTTTAGGCTCTGCTATCGGCAGGCACAGACACAACGATGGTAACTCTAACATGGATTTTATCTCTACTACTCAACAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCCGATATAAAAAACTTAGTTTATTTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGGACCGCTCTCTTTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTATTAGTGAACATATGGAAGATTCAGCGCGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCACAAGGATGTCGATGTAAAGGGCAATCACTTTGAGTTAATGCCATTTG</genome_strand>
        <mrna_strand>GGAGTAATGAGGACGAAGGAATAAATAAGGCTCACATAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAAGAGATTTCTGAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCAAATGTGAAGACAGAGATCTGCCTGGATTTGATGCCGATACTGCTATAAAAGCTAATTGCATG...............................................................................GGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAACCTGTTGTCAAAGAAGTATTACGTTTATATCCAGCTGGGCCGCTCTCTGTACCACACGAGTCAAGGGAGGATTGTGTTATTGGGGGATACGATATACCAAAAGGGACTCGCTTATTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCACAAGGATGTGGATGTAAAGGGAAATCACTTTGAGTTAATGCCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248720" ref_strand="+" ref_description="SGN-E248720 [cLEF-58-M8]">
      <seq>acgaaggaataaataaagctcacaaagcaattcgaagatttttcgaattgttaggagtttttgttgtggctgattttttaccttatttaagatggctcgacattggaggccatgagaaagcgatgaaggaggtttctcaagaaatggactctgttgttgaagaatggttaacagagcacaaaacgaagagaggaattattaaatctggtgaagaagaagatttcatggatctaatgctttccgtttgtgaagacagagatctacctggagttgatgccgataccgctatcaaagctacatgctctgctatcggcaggcacagacacaacgatggtaactctaacatggattttatctctactactcaacaactatcaatcacttcaaaaggctcaagatgagctagacgctcatgttggcaagaatagatgggtccaagaatccgatataaaaaacttagtttatcttcaagctattgttaaagaagcattacgtttatatccagctggaccgctctctttaccacacgagtcgatggaggattgtactatcagtgggtatgatataccaaaaggcactcgcttattagtgaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="108908" stop="107628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108608" g_stop="108309" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108308" i_stop="108225" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108224" g_stop="107928" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="597" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E248720" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108608" e_stop="108309"/>
          <exon e_start="108224" e_stop="107928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACATGTATGGTACGTTACTTCTGATCAAATTACTCTAAAATTGTATGATCACGTATATGGTTCCGATTGTTGAATTTGTCTTGTTTAGGCTCTGCTATCGGCAGGCACAGACACAACGATGGTAACTCTAACATGGATTTTATCTCTACTACTCAACAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCCGATATAAAAAACTTAGTTTATTTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGGACCGCTCTCTTTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTATTAGTGAACATA</genome_strand>
        <mrna_strand>ACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTCGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTCAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATCTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACAT....................................................................................GCTCTGCTATCGGCAGGCACAGACACAACGATGGTAACTCTAACATGGATTTTATCTCTACTACTCAACAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCCGATATAAAAAACTTAGTTTATCTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGGACCGCTCTCTTTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTATTAGTGAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738171" ref_strand="+" ref_description="SGN-E738171 [LC12CF04]">
      <seq>ctcctttattctacttttcgttcttcataaacaattttactcagttaaaaagcagagtagtagtagtagaaaggtacctgaagctggcggagcatggcctattatcggccatctccaccttctcggtggatctgaatctgatcacttgcctcacaaaatgttgggccgcttggcagataagtacgggcctattttcggaatgaagcttggagttcatcaggttgtagttgtgagtgatcacaaattagcaacagagtgcttcacaactaacgatttagccctagcaggtcggcctaaatcaatggcttcagagattataggctacaaacatgctatgtttggactttgttcttacggtccgtactggagagaaacaaggaaaattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttataataattgggggaagaataatgtaaatggttttgtaaagatggagatgaaggaatggattggggatttatttatgaacactatggggaaaatattattcggaaaagggcgaaggagtaacgaggacgaaggaataaataaagctcacaaagcaattagaagatttttcgaattgttaggagtttttgttgtggctgattttttaccttatttaagatggctggacattggaggccatgagaaagcgatgaaggaggtttctaaagaaatggactctgttgttgaagaatggttaacagagcacaaaacgaagagacgaattattaaatctggtgaagaagaagatttcatggatgtaatgctttccgtttgtgaagacagagatctacctggagttgatgccgataccgctatcaaagctacatgtatggctctgctatcggcaggcacagacacaacgatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="109507" stop="107890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109207" g_stop="108304" g_length="904"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="904" r_length="904" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108303" i_stop="108225" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108224" g_stop="108190" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="939" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E738171" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109207" e_stop="108304"/>
          <exon e_start="108224" e_stop="108190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTATTCTACTTTTCATTCTTCATAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGAGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGGGATTTATTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAACGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACATGTATGGTACGTTACTTCTGATCAAATTACTCTAAAATTGTATGATCACGTATATGGTTCCGATTGTTGAATTTGTCTTGTTTAGGCTCTGCTATCGGCAGGCACAGACACAACGATGGT</genome_strand>
        <mrna_strand>CTCCTTTATTCTACTTTTCGTTCTTCATAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAACAGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGGGAAGAATAATGTAAATGGTTTTGTAAAGATGGAGATGAAGGAATGGATTGGGGATTTATTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAACGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTAGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGACGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACATGTATG...............................................................................GCTCTGCTATCGGCAGGCACAGACACAACGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369497" ref_strand="+" ref_description="SGN-E369497 [TUS-23-I15]">
      <seq>tttctcagcgaaaatacatagtaaaagtaaaagagtacctggagctggcggagcatggcctattatcggtcatcttcaccttttgagtggatccgaaacagagcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttatagtaattgggggaagaataatttaaatggtgttgtgaagatggagatgaaggaatggattggagatttagttatgaatactatggggaaaatattattcggaaaagggcgaaggagtaatgaggacgaaggaataaataaagctcacaaagcaattcgaagatttttcgaattgttaggagcttttgttgtggctgattttttaccttatttaagatggctcgacattggaggccatgagaaagcgatgaaggaggtttctaaagaaatggactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="109459" stop="108156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109152" g_stop="108456" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="713" r_length="696" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E369497" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109152" e_stop="108456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGAGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGGGATTTATTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAACGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTG</genome_strand>
        <mrna_strand>A-TAGTAAAAGTAAAAGAGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTAATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTCGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246195" ref_strand="+" ref_description="SGN-E246195 [cLEF-40-B18]">
      <seq>gaaaatacatagtataagtaaaagagtacctggagctggcggagcgtggcctattatcggtcatcttcaccttttgagtggatccgaaacagagcaattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttatagtaattgggggaagaataatttaaatggtgttgtgaagatggagatgaaggaatggattggagatttaattatgaatactatggggaaaatattattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="109459" stop="108333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109160" g_stop="108633" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E246195" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109160" e_stop="108633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAGAGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGAGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGGGATTTATTTATGAACACTATGGGGAAAATATTATTCG</genome_strand>
        <mrna_strand>GAAAATACA-TAGTATAAGTAAAAGAGTACCTGGAGCTGGCGGAGCGTGGCCTATTATCGGTCATCTTCACCTTTTGAGTGGATCCGAAACAGAGCAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTAATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAATTATGAATACTATGGGGAAAATATTATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336652" ref_strand="+" ref_description="SGN-E336652 [cTOE-4-P23]">
      <seq>caattacctcacaaaatcatggggcgcatggcagataagtacgggccaattttcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagccaaagaatgtttcacaactaacgatttagccctagcaggtcgccctaaatccatggcttcagagattgtaggctacaaacacgctatgtttgcactttctgcttacggtccttactggagagaaacaaggaagattgccacaattgaacttttctccgctcgacgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcaggtattaaagagatttatagtaattgggggaagaataatttaaatggtgttgtgaagatggagatgaaggaatggattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="109365" stop="108371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109065" g_stop="108669" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E336652" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109065" e_stop="108669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGAGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGGG</genome_strand>
        <mrna_strand>CAATTACCTCACAAAATCATGGGGCGCATGGCAGATAAGTACGGGCCAATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGCCAAAGAATGTTTCACAACTAACGATTTAGCCCTAGCAGGTCGCCCTAAATCCATGGCTTCAGAGATTGTAGGCTACAAACACGCTATGTTTGCACTTTCTGCTTACGGTCCTTACTGGAGAGAAACAAGGAAGATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAGTAATTGGGGGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283016" ref_strand="+" ref_description="SGN-E283016 [cLER-17-D3]">
      <seq>tattacccatggatttatttctaattgttgttacattagctacctcctttattctacttttcattcttcataaacaattttactcagttaaaaagcagagtagtaatagtacgaaaggtacctgaagctggcggagcatggactattatcggccatctccaccttgtaggtggatctgaatctgatcacttgcctcacaaaatgttgggccgcttggcagataagtacgggcctattttcggaatgaagcttggagttcatcaagttgtagttgtgagtgatcacaaattagcaaaggagtgcttgacaactaacgatttagccctagcaggtcggtctaaatcaatggcttcagagattataggctacaaacatgctatgtttggactttggtcttacggtgcgtactggagagaaacaaggaaaattgccacaattgaacttttctccggtcgacgaatcgagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="109550" stop="108481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109250" g_stop="108781" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E283016" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109250" e_stop="108781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACCCATGGATTTATTTCTAATTGTTGTTACATTAGCTACCTCCTTTATTCTACTTTTCATTCTTCATAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGTA-GAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTC</genome_strand>
        <mrna_strand>TATTACCCATGGATTTATTTCTAATTGTTGTTACATTAGCTACCTCCTTTATTCTACTTTTCATTCTTCATAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAATAGTACGAAAGGTACCTGAAGCTGGCGGAGCATGGACTATTATCGGCCATCTCCACCTTGTAGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAAGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTGACAACTAACGATTTAGCCCTAGCAGGTCGGTCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGGTCTTACGGTGCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGGTCGACGAATCGAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="116563" stop="115156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116263" g_stop="115456" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116263" e_stop="115456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGATATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTAATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="117222" stop="115974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116922" g_stop="116274" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116922" e_stop="116274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAAAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTTGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="117221" stop="116237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116921" g_stop="116537" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116921" e_stop="116537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAAAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTTGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708065" ref_strand="+" ref_description="SGN-E708065 [FA34DA10]">
      <seq>ccataacaaagagaggaattattaaatctggtgaagaagaagatttcatggatgtaatgctttccaaatgtgaagacagagatctgcctggatttgatgccgatactgctataaaagctaattgcatgggtctactatcggcaggtacagacaccaccatcgtaactttaacatgggctttatgtttactcttgaacaactacgaagcactaaaaaaggctcaagatgagctagacgctcatgttggcaagaatagatgggtccaagaatcggatatcaagaacttggtttatcttcaagctgttgtcaaagaagtattacgtttatatccagctgggccgctctctgtaccacacgagtcaagggaggattgtgttattgggggatacgatataccaaaagggactcgcttattagtgaacttatggaagattcagcacgatcctaatatatggccaaatcctcacgagtttaagccagagaggttcttgtcgacccacaaggatgtggatgtaaagggaaatcactttgagttaatgccatttggtagtggaagaagaatgtgccctggaatatctttggcccttcaagtggtgccctttgtaatagcagtgttgctgcaggggtttgacatgaagaggccttcagatgaagcaattgatatgagtgagagctttggattgacagtgctcaaagcttctccactccaagttctccttgctccgcgcttggctcccgatctttatgaatgaaatgatagacaaaatttgtgcctcatgccactgttgtttactacaagtttgtaatattgtaatgcagataataacagaacttcaaaattcttcatttgaaatgtgattgtaaaagtatttctggagcccttgnttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="122606" stop="121049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122307" g_stop="122180" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122179" i_stop="122105" i_length="75">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122104" g_stop="121360" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="872" r_length="744" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E708065" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122307" e_stop="122180"/>
          <exon e_start="122104" e_stop="121360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCTTGGATTCGATGCCGATACCGCTATCAAAGCTACATGTATGGTACGTTAATTATTCCAAAATTGTTTCTATCTTGATCTCGTATATGAATTTGATTGCTGAATTTGTCTTGTTTAGGCTCTGCTATCGGCAGGTACAGACACGACGATTGTAACTCTAACGTGGACTTTATCTCTACTACTCAATAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAACAGATGGGTCCAAGAATCGGATATAAAAAGCTTAGTTTATCTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGCACCACTCTCAGTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTACTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCTCGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCATAAGGATGTGGATGTAAAGGGCAATCACTTTGAGTTAATGCCATTTGGTAGTGGAAGAAGAATGTGCCCTGGAATTTCGTTAGCCCTTCAAGTTTTGCCCTTTGTAATTGCAAAATTGCTGCAGGGTTTTAACATGAAGAGGCCTTCAGATGAACCAATTGATATGAGTGAGAGCTTTGGATTGACCGTACTCAAAGCTTCTCCACTCGAAGTTCTCCTTGCTCCGCGCTTGGCTCCCGATCTTTATGAATGAAATGATAGACAAAACTTGTGCCTCATGCCACTGTTGTTTACTACAAGTTTGTAATATTGTAATGCAGATAATAACAGAACTTAAAAATTCCTTCATTTGAAATGCGATTGTAAAAGTATTT</genome_strand>
        <mrna_strand>CCATAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCAAATGTGAAGACAGAGATCTGCCTGGATTTGATGCCGATACTGCTATAAAAGCTAATTGCATG...........................................................................GGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTGTTGTCAAAGAAGTATTACGTTTATATCCAGCTGGGCCGCTCTCTGTACCACACGAGTCAAGGGAGGATTGTGTTATTGGGGGATACGATATACCAAAAGGGACTCGCTTATTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCACAAGGATGTGGATGTAAAGGGAAATCACTTTGAGTTAATGCCATTTGGTAGTGGAAGAAGAATGTGCCCTGGAATATCTTTGGCCCTTCAAGTGGTGCCCTTTGTAATAGCAGTGTTGCTGCAGGGGTTTGACATGAAGAGGCCTTCAGATGAAGCAATTGATATGAGTGAGAGCTTTGGATTGACAGTGCTCAAAGCTTCTCCACTCCAAGTTCTCCTTGCTCCGCGCTTGGCTCCCGATCTTTATGAATGAAATGATAGACAAAATTTGTGCCTCATGCCACTGTTGTTTACTACAAGTTTGTAATATTGTAATGCAGATAATAACAGAACTTCAAAATT-CTTCATTTGAAATGTGATTGTAAAAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335813" ref_strand="+" ref_description="SGN-E335813 [cTOE-6-A12]">
      <seq>caggtacagacacgacgattgtaactctaacgcggactttatctctactactcaataactatcaatcacttcagaaagctcaagatgagctagacgctcatgttggcaagaacagatgggtccaagaatcggatataaaaagcttagtttatcttcaagctattgttaaagaagcattacgtttatatccagctgcaccactctcagtaccacacgagtcgatggaggattgtactatcagtgggtatgatataccaaaaggcactcgcttactagtgaacttatggaagattcagcacgatcctaatatatggccaaatcctcacgagtttaagccagagaggttcttgtcgacccataaggatgtggatgtaaagggcaatcactttgagttaatgccatttggtagtggaagaagaatgtgccctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="122391" stop="121361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122091" g_stop="121661" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E335813" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122091" e_stop="121661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTACAGACACGACGATTGTAACTCTAACGTGGACTTTATCTCTACTACTCAATAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAACAGATGGGTCCAAGAATCGGATATAAAAAGCTTAGTTTATCTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGCACCACTCTCAGTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTACTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCTCGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCATAAGGATGTGGATGTAAAGGGCAATCACTTTGAGTTAATGCCATTTGGTAGTGGAAGAAGAATGTGCCCTGGA</genome_strand>
        <mrna_strand>CAGGTACAGACACGACGATTGTAACTCTAACGCGGACTTTATCTCTACTACTCAATAACTATCAATCACTTCAGAAAGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAACAGATGGGTCCAAGAATCGGATATAAAAAGCTTAGTTTATCTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGCACCACTCTCAGTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTACTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCATAAGGATGTGGATGTAAAGGGCAATCACTTTGAGTTAATGCCATTTGGTAGTGGAAGAAGAATGTGCCCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331810" ref_strand="+" ref_description="SGN-E331810 [cTOD-7-I20]">
      <seq>tttagttatgaatactatggggaaaatattattcggaaaagggcgaaggagtaatgaggacgaaggaataaataaagctcacaaagcaattcgaagatttttcgaattgttaggagcttttgttgtggctgattttttaccttatttaagatggctcgacattggaggccatgagaaagcgatgaaggaggtttctaaagaaatggactctgttgttgaagaatggttaacggagcacaaaacaaagagaggaattatcaaatctggtgaagaagaagatttcatggatgtcatgctttccatttgtgaagacagagatctgcctggttttgatgccgatactgctataaaagctaattgcatgggtctactatcggcaggtacagacaccaccatcgtaactttaacatgggctttatgtttactcttgaacaactacgaagcactaaaaaaggctcaagatgagctagacgctcatgtcggcaacaacagatgggtccaagaatcggatatcaagaacttggtttatcttcaagctattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="122843" stop="121626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122543" g_stop="122180" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122179" i_stop="122105" i_length="75">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122104" g_stop="121925" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="544" r_length="180" r_score="0.856"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E331810" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122543" e_stop="122180"/>
          <exon e_start="122104" e_stop="121925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAGGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTACTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAATTGGACTCTGTTGTTGCAGAATGGTTAACAGAGCACAAAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCTTGGATTCGATGCCGATACCGCTATCAAAGCTACATGTATGGTACGTTAATTATTCCAAAATTGTTTCTATCTTGATCTCGTATATGAATTTGATTGCTGAATTTGTCTTGTTTAGGCTCTGCTATCGGCAGGTACAGACACGACGATTGTAACTCTAACGTGGACTTTATCTCTACTACTCAATAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAACAGATGGGTCCAAGAATCGGATATAAAAAGCTTAGTTTATCTTCAAGCTATTGTT</genome_strand>
        <mrna_strand>TTTAGTTATGAATACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTCGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACGGAGCACAAAACAAAGAGAGGAATTATCAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCCTGGTTTTGATGCCGATACTGCTATAAAAGCTAATTGCATG...........................................................................GGTCTACTATCGGCAGGTACAGACACCACCATCGTAACTTTAACATGGGCTTTATGTTTACTCTTGAACAACTACGAAGCACTAAAAAAGGCTCAAGATGAGCTAGACGCTCATGTCGGCAACAACAGATGGGTCCAAGAATCGGATATCAAGAACTTGGTTTATCTTCAAGCTATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265886" ref_strand="+" ref_description="SGN-E265886 [cLEI-11-B14]">
      <seq>ggaaaagggctaacgagtaatgatgaccaaagaatggataaggctcacaaagcaattctgaagatttttcgaattgttaggagcttttgttgtggctgattttttaccttacttaacatggctggacattggaggtcatgacaaagcgatgaaggaggtttctaaagaattggactctgttgtagcagaatggttaacagagcacagaacaaagagaggaattattaaatctggtgaagaagaagatttcatggatgtcatgctttccatttgtgaagacagagatctgcttggattcgatgccgataccgctatcaaagctacatgtatggctctgctatcggcaggtacagacacgacgattgtaactctaacgtggactttatctctactactcagtaactatcaatcacttcataaggctcaagatgagctagacgctcatgttggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="122809" stop="121682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122509" g_stop="122180" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122179" i_stop="122105" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122104" g_stop="121982" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="454" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E265886" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122509" e_stop="122180"/>
          <exon e_start="122104" e_stop="121982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAGGCTCACAAAGCAATTC-GAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTACTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAATTGGACTCTGTTGTTGCAGAATGGTTAACAGAGCACAAAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCTTGGATTCGATGCCGATACCGCTATCAAAGCTACATGTATGGTACGTTAATTATTCCAAAATTGTTTCTATCTTGATCTCGTATATGAATTTGATTGCTGAATTTGTCTTGTTTAGGCTCTGCTATCGGCAGGTACAGACACGACGATTGTAACTCTAACGTGGACTTTATCTCTACTACTCAATAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAG</genome_strand>
        <mrna_strand>GGAAAAGGGCTAACGAGTAATGATGACCAAAGAATGGATAAGGCTCACAAAGCAATTCTGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTACTTAACATGGCTGGACATTGGAGGTCATGACAAAGCGATGAAGGAGGTTTCTAAAGAATTGGACTCTGTTGTAGCAGAATGGTTAACAGAGCACAGAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCTTGGATTCGATGCCGATACCGCTATCAAAGCTACATGTATG...........................................................................GCTCTGCTATCGGCAGGTACAGACACGACGATTGTAACTCTAACGTGGACTTTATCTCTACTACTCAGTAACTATCAATCACTTCATAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205521" ref_strand="+" ref_description="SGN-E205521 [cLEC-28-N5]">
      <seq>acaaaacgttgagccgcatggcagataagtacgggccgatattcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagtcaaagaatgcttcacaactaacgatttagccctagccaaccggcctaaatccatggtttcagagattataggctacaaagacgctatgtttggactttgttcttacggtccttactggagagaaacaaggaaaattgccacaattgaacttttctcatctcggcgaatcgagatgctcaaacacatcagagaatttgaggtaaaatcatctgttgaagagatttataataattgggggaagaataatttaaatggttttgtgaagatggagatgaaggaatggattggagatttagttatgaacactatggggaaaatattattcggaaaagggcgaaggagtaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="123231" stop="122187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122931" g_stop="122487" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E205521" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122931" e_stop="122487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTAGCCAACCGGCCTAAATCCATGGTTTCAGAGATTATAGGCTACAAAGACGCTATGTTTGGACTTTGTTCTTACGGTCCTTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCAGCTCGGCGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCATCTGTTAAAGAGATTTATAATAATTGGGGGAAGAATAATTTAAATGGTTTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGA</genome_strand>
        <mrna_strand>ACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTAGCCAACCGGCCTAAATCCATGGTTTCAGAGATTATAGGCTACAAAGACGCTATGTTTGGACTTTGTTCTTACGGTCCTTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCATCTCGGCGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCATCTGTTGAAGAGATTTATAATAATTGGGGGAAGAATAATTTAAATGGTTTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300230" ref_strand="+" ref_description="SGN-E300230 [cLEW-17-M18]">
      <seq>gctttcgtatacaaattcatatttacgattcatgcgtctaagttttcataaaaataaacaaggtaagagtgttatcacttaccccaatctctctacataaatttcaagtgtctcacatcgaagaagacgactgataaattttattagcaatggatccctttctaattgctgttacattagctacctccttttttctaattttctttcttcagaaacaattttactcagttaaaaagcagagtagtagtagtagaaaggtacctgaagctggcggagcatggcctattatcggccatctccaccttctcgctggatctgaatctgatcacttgcctcacaaaacgttgagccgcatggcagataagtacgggccgatattcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagtcaaagaatgcttcacaactaacgatttagccctagccaaccggcctaaatccatggtttcagagattataggctacaaagacgctatgtttggactttgttcttacggtccttactggagagaaacaaggaaaattgccacaattgaacttttctcagctcggcgaatcgagatgctcaaacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="123564" stop="122348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123264" g_stop="122648" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E300230" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123264" e_stop="122648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCGTATACAAATTCATATTTACGATTCATGCGTCTAAGTTTTCATAAAAATAAACAAGGTAAGAGTGTTATCACTTACCCCAATCTCTCTACATAAATTTCAAGTGTCTCACATCGAAGAGGACGACTGATAAATTTTATTAGCAATGGATCCCTTTCTAATTGCTGTTACATTAGCTACCTCCTTTTTTCTAATTTTCTTTCTTCAGAAACAATTTTACTCAGTTAAAAAGC--AG-AGTAGTAGTAGAAAGGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGCTGGATCTGAATCTGATCACTTGCCTCACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTAGCCAACCGGCCTAAATCCATGGTTTCAGAGATTATAGGCTACAAAGACGCTATGTTTGGACTTTGTTCTTACGGTCCTTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCAGCTCGGCGAATCGAGATGCTCAAACACATC</genome_strand>
        <mrna_strand>GCTTTCGTATACAAATTCATATTTACGATTCATGCGTCTAAGTTTTCATAAAAATAAACAAGGTAAGAGTGTTATCACTTACCCCAATCTCTCTACATAAATTTCAAGTGTCTCACATCGAAGAAGACGACTGATAAATTTTATTAGCAATGGATCCCTTTCTAATTGCTGTTACATTAGCTACCTCCTTTTTTCTAATTTTCTTTCTTCAGAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGCTGGATCTGAATCTGATCACTTGCCTCACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTAGCCAACCGGCCTAAATCCATGGTTTCAGAGATTATAGGCTACAAAGACGCTATGTTTGGACTTTGTTCTTACGGTCCTTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCAGCTCGGCGAATCGAGATGCTCAAACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338586" ref_strand="+" ref_description="SGN-E338586 [cTOE-15-E24]">
      <seq>tctcccaaaaataggagaggatccacagtaactgtcttttccacaccaaaaagttatgtcaacgctttcgtatacaaattcatatttacgattcatgcgtctaagttttcataaaaataaacaaggtaagagtgttatcacttaccccaatctctctacataaatttcaagtgtctcacatcgaagaagacgactgataaattttattagcaatggatccctttctaattgctgttacattagctacctccttttttctaattttctttcttcagaaacaattttactcagttaaaaagcagagtagtagtagtagaaaggtacctgaagctggcggagcatggcctattatcggccatctccaccttctcgctggatctgaatctgatcacttgcctcacaaaacgttgagccgcatggcagataagtacgggccgatattcggaatgaagcttggagttcatcaggttgtagttgtgagcgatcccaaattagtcaaagaatgcttcacaactaacgatttagcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-eJHTc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="-" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="123627" stop="122501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123327" g_stop="122801" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="-" ref_id="SGN-E338586" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123327" e_stop="122801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAAAAATAGGAGAGGATCCACAGTAACTGTCTTTTCCACACCAAAAAGTTATGTCAACGCTTTCGTATACAAATTCATATTTACGATTCATGCGTCTAAGTTTTCATAAAAATAAACAAGGTAAGAGTGTTATCACTTACCCCAATCTCTCTACATAAATTTCAAGTGTCTCACATCGAAGAGGACGACTGATAAATTTTATTAGCAATGGATCCCTTTCTAATTGCTGTTACATTAGCTACCTCCTTTTTTCTAATTTTCTTTCTTCAGAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAG---AAAGGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGCTGGATCTGAATCTGATCACTTGCCTCACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTA</genome_strand>
        <mrna_strand>TCTCCCAAAAATAGGAGAGGATCCACAGTAACTGTCTTTTCCACACCAAAAAGTTATGTCAACGCTTTCGTATACAAATTCATATTTACGATTCATGCGTCTAAGTTTTCATAAAAATAAACAAGGTAAGAGTGTTATCACTTACCCCAATCTCTCTACATAAATTTCAAGTGTCTCACATCGAAGAAGACGACTGATAAATTTTATTAGCAATGGATCCCTTTCTAATTGCTGTTACATTAGCTACCTCCTTTTTTCTAATTTTCTTTCTTCAGAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGCTGGATCTGAATCTGATCACTTGCCTCACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>107</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13065" PGL_stop="14242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13065" e_stop="13531"/>
            <exon e_start="13750" e_stop="13921"/>
            <exon e_start="13994" e_stop="14242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.940" e_score="0.988"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="13065" e_stop="13531" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13532" i_stop="13749" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="13750" e_stop="13921" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.940">
            <gDNA_intron_boundary i_start="13922" i_stop="13993" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.940">
            <gDNA_exon_boundary e_start="13994" e_stop="14242" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13065" stop="13531"/>
              <exon start="13750" stop="13921"/>
              <exon start="13994" stop="14242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTTCTATGAAAAGAGAATTCCGTCTTGTTCAGAAGCAAAATTAACAATCTTACTCTCAGCTAAGAAAGAAATTAGTGTGTTGGGTTGGAGAAGAAAAAGTAAAATTCCATGTCACACAGCTTTCATCAACAACAAGGATTTTACAATTTCTCAAATGTATATGAGAGATCTGCAACGACGACGACGAAGCATGAAGATATGTTAAGAGTACAAGGCTTTGAGCCACAGCAAGTTGAAGTAGCAGCGGCGGATGTTGAGCCGCCGCCTACTGCAACGGTTTATGACGATGGTGGAATGTTGACGGAGATTATCAGCTACCCATCTGCGTGGCGGAAAACCGCCACGGAGATATTGGACGATCAGATCCAATCGAGTAATTATCGATCGTGGCCACAAAAGGAGCAGCAGCATCTTCAGCAGCAGCAGCAACAACTTCTTCCACAATCAATAATAAACGATACTGAG : CTTCCTCTAATGAATCCTCATATTAAACCGTCATCTCCGCCTCGCTCTTCATCTTCACTTCACATGTTACTTCCAAACTCAGTAGACACAAACAATCTTCTTCATCATCAAGGATTTCACTTGCTTAATCCAGCACCCGTGGAAACTCCGTCTCAATTCACATGGATTCCAG : GTAGTAGTAGTGGAGAGGACAATTCCGCTAGGATTGGAAGGGTTGTGGATGGTCAAGGTCTTTCCTTATCGCTTTCTAGAAATTTCGAAGCTGCTGCAAAATTGGAAGACTTGAGAATCGGAAACGGTGAAATTTACTTGCATAATAATCAAGGACTATTAGGTCCGATTAATAACAACAATCATCACCACCATCACCATCAACTGTTACATTCAGGAGTAATTATGGATCATCGTACTCCTCCTCATC</gDNA_template>
            <first_frame> R  F  Y  E  K  R  I  P  S  C  S  E  A  K  L  T  I  L  L  S  A  K  K  E  I  S  V  L  G  W  R  R  K  S  K  I  P  C  H  T  A  F  I  N  N  K  D  F  T  I  S  Q  M  Y  M  R  D  L  Q  R  R  R  R  S  M  K  I  C  *  E  Y  K  A  L  S  H  S  K  L  K  *  Q  R  R  M  L  S  R  R  L  L  Q  R  F  M  T  M  V  E  C  *  R  R  L  S  A  T  H  L  R  G  G  K  P  P  R  R  Y  W  T  I  R  S  N  R  V  I  I  D  R  G  H  K  R  S  S  S  I  F  S  S  S  S  N  N  F  F  H  N  Q  *  *  T  I  L  S :   F  L  *  *  I  L  I  L  N  R  H  L  R  L  A  L  H  L  H  F  T  C  Y  F  Q  T  Q  *  T  Q  T  I  F  F  I  I  K  D  F  T  C  L  I  Q  H  P  W  K  L  R  L  N  S  H  G  F  Q  :  V  V  V  V  E  R  T  I  P  L  G  L  E  G  L  W  M  V  K  V  F  P  Y  R  F  L  E  I  S  K  L  L  Q  N  W  K  T  *  E  S  E  T  V  K  F  T  C  I  I  I  K  D  Y  *  V  R  L  I  T  T  I  I  T  T  I  T  I  N  C  Y  I  Q  E  *  L  W  I  I  V  L  L  L  I </first_frame>
            <second_frame>  V  S  M  K  R  E  F  R  L  V  Q  K  Q  N  *  Q  S  Y  S  Q  L  R  K  K  L  V  C  W  V  G  E  E  K  V  K  F  H  V  T  Q  L  S  S  T  T  R  I  L  Q  F  L  K  C  I  *  E  I  C  N  D  D  D  E  A  *  R  Y  V  K  S  T  R  L  *  A  T  A  S  *  S  S  S  G  G  C  *  A  A  A  Y  C  N  G  L  *  R  W  W  N  V  D  G  D  Y  Q  L  P  I  C  V  A  E  N  R  H  G  D  I  G  R  S  D  P  I  E  *  L  S  I  V  A  T  K  G  A  A  A  S  S  A  A  A  A  T  T  S  S  T  I  N  N  K  R  Y  *   : A  S  S  N  E  S  S  Y  *  T  V  I  S  A  S  L  F  I  F  T  S  H  V  T  S  K  L  S  R  H  K  Q  S  S  S  S  S  R  I  S  L  A  *  S  S  T  R  G  N  S  V  S  I  H  M  D  S  R :   *  *  *  W  R  G  Q  F  R  *  D  W  K  G  C  G  W  S  R  S  F  L  I  A  F  *  K  F  R  S  C  C  K  I  G  R  L  E  N  R  K  R  *  N  L  L  A  *  *  S  R  T  I  R  S  D  *  *  Q  Q  S  S  P  P  S  P  S  T  V  T  F  R  S  N  Y  G  S  S  Y  S  S  S   </second_frame>
            <third_frame>   F  L  *  K  E  N  S  V  L  F  R  S  K  I  N  N  L  T  L  S  *  E  R  N  *  C  V  G  L  E  K  K  K  *  N  S  M  S  H  S  F  H  Q  Q  Q  G  F  Y  N  F  S  N  V  Y  E  R  S  A  T  T  T  T  K  H  E  D  M  L  R  V  Q  G  F  E  P  Q  Q  V  E  V  A  A  A  D  V  E  P  P  P  T  A  T  V  Y  D  D  G  G  M  L  T  E  I  I  S  Y  P  S  A  W  R  K  T  A  T  E  I  L  D  D  Q  I  Q  S  S  N  Y  R  S  W  P  Q  K  E  Q  Q  H  L  Q  Q  Q  Q  Q  Q  L  L  P  Q  S  I  I  N  D  T  E  :  L  P  L  M  N  P  H  I  K  P  S  S  P  P  R  S  S  S  S  L  H  M  L  L  P  N  S  V  D  T  N  N  L  L  H  H  Q  G  F  H  L  L  N  P  A  P  V  E  T  P  S  Q  F  T  W  I  P   : G  S  S  S  G  E  D  N  S  A  R  I  G  R  V  V  D  G  Q  G  L  S  L  S  L  S  R  N  F  E  A  A  A  K  L  E  D  L  R  I  G  N  G  E  I  Y  L  H  N  N  Q  G  L  L  G  P  I  N  N  N  N  H  H  H  H  H  H  Q  L  L  H  S  G  V  I  M  D  H  R  T  P  P  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13169" stop="13531"/>
                    <exon start="13750" stop="13921"/>
                    <exon start="13994" stop="14241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSMSHSFHQQQGFYNFSNVYERSATTTTKHEDMLRVQGFEPQQVEVAAADVEPPPTATVYDDGGMLTEIISYPSAWRKTATEILDDQIQSSNYRSWPQKEQQHLQQQQQQLLPQSIINDTELPLMNPHIKPSSPPRSSSSLHMLLPNSVDTNNLLHHQGFHLLNPAPVETPSQFTWIPGSSSGEDNSARIGRVVDGQGLSLSLSRNFEAAAKLEDLRIGNGEIYLHNNQGLLGPINNNNHHHHHHQLLHSGVIMDHRTPPH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14283" PGL_stop="15651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14283" e_stop="14571"/>
            <exon e_start="15341" e_stop="15651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14283" e_stop="14571" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14572" i_stop="15340" i_length="769"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15341" e_stop="15651" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14283" stop="14571"/>
              <exon start="15341" stop="15651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATTCATGTTGGATACGCAGCATCATCACCAAGAATATCAAATGCTCTAAGAAATTCGCGATATGTAAAAGCTACACAAGAGCTACTTGAAGAATTTTGCTGTGTAGGTAGGGGAAATTTCAAAAATCAAAGGGTGAAGAAATTAGACGATGATCAAAACCCTAATTCCAACTCGGAGAGTGAAGATCATCGTGGTCCCTCCAAAGATAATCATCCTCCATTATCAGCTGCTGAGAGATCTGAATATCAACGGAGGAAAATCAAGTTGTTATCTATGCTCGATGAG : GTAGATGCAAGGTACACGCGTTACTGTGAGCAAATGCAGGCGATGGTGAATTCATTCGATTCAGTAATCGGTTACGGTGCAGCAGCTCCATACACAGCGTTAGCTCAGAAGGCGATGTCGAGGCATTTCCGATGTATAAAGGATGCGATTGTTGGTCAATTGAAACAGACTTGTAAGTATTTGGGGGAGAAAGATGTGACGGGAACGAGTGGGTTAACAAAAGGGGAAACACCGAGGTTGAAAATGCTTGATCAGAAATTGAGGCAACAAAAGGCATTACATCAAATGGGAATGTTGGATTCTGATGCTTG</gDNA_template>
            <first_frame> S  N  S  C  W  I  R  S  I  I  T  K  N  I  K  C  S  K  K  F  A  I  C  K  S  Y  T  R  A  T  *  R  I  L  L  C  R  *  G  K  F  Q  K  S  K  G  E  E  I  R  R  *  S  K  P  *  F  Q  L  G  E  *  R  S  S  W  S  L  Q  R  *  S  S  S  I  I  S  C  *  E  I  *  I  S  T  E  E  N  Q  V  V  I  Y  A  R  *   : G  R  C  K  V  H  A  L  L  *  A  N  A  G  D  G  E  F  I  R  F  S  N  R  L  R  C  S  S  S  I  H  S  V  S  S  E  G  D  V  E  A  F  P  M  Y  K  G  C  D  C  W  S  I  E  T  D  L  *  V  F  G  G  E  R  C  D  G  N  E  W  V  N  K  R  G  N  T  E  V  E  N  A  *  S  E  I  E  A  T  K  G  I  T  S  N  G  N  V  G  F  *  C  L </first_frame>
            <second_frame>  Q  I  H  V  G  Y  A  A  S  S  P  R  I  S  N  A  L  R  N  S  R  Y  V  K  A  T  Q  E  L  L  E  E  F  C  C  V  G  R  G  N  F  K  N  Q  R  V  K  K  L  D  D  D  Q  N  P  N  S  N  S  E  S  E  D  H  R  G  P  S  K  D  N  H  P  P  L  S  A  A  E  R  S  E  Y  Q  R  R  K  I  K  L  L  S  M  L  D  E  :  V  D  A  R  Y  T  R  Y  C  E  Q  M  Q  A  M  V  N  S  F  D  S  V  I  G  Y  G  A  A  A  P  Y  T  A  L  A  Q  K  A  M  S  R  H  F  R  C  I  K  D  A  I  V  G  Q  L  K  Q  T  C  K  Y  L  G  E  K  D  V  T  G  T  S  G  L  T  K  G  E  T  P  R  L  K  M  L  D  Q  K  L  R  Q  Q  K  A  L  H  Q  M  G  M  L  D  S  D  A   </second_frame>
            <third_frame>   K  F  M  L  D  T  Q  H  H  H  Q  E  Y  Q  M  L  *  E  I  R  D  M  *  K  L  H  K  S  Y  L  K  N  F  A  V  *  V  G  E  I  S  K  I  K  G  *  R  N  *  T  M  I  K  T  L  I  P  T  R  R  V  K  I  I  V  V  P  P  K  I  I  I  L  H  Y  Q  L  L  R  D  L  N  I  N  G  G  K  S  S  C  Y  L  C  S  M  R :   *  M  Q  G  T  R  V  T  V  S  K  C  R  R  W  *  I  H  S  I  Q  *  S  V  T  V  Q  Q  L  H  T  Q  R  *  L  R  R  R  C  R  G  I  S  D  V  *  R  M  R  L  L  V  N  *  N  R  L  V  S  I  W  G  R  K  M  *  R  E  R  V  G  *  Q  K  G  K  H  R  G  *  K  C  L  I  R  N  *  G  N  K  R  H  Y  I  K  W  E  C  W  I  L  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14284" stop="14571"/>
                    <exon start="15341" stop="15649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHVGYAASSPRISNALRNSRYVKATQELLEEFCCVGRGNFKNQRVKKLDDDQNPNSNSESEDHRGPSKDNHPPLSAAERSEYQRRKIKLLSMLDEVDARYTRYCEQMQAMVNSFDSVIGYGAAAPYTALAQKAMSRHFRCIKDAIVGQLKQTCKYLGEKDVTGTSGLTKGETPRLKMLDQKLRQQKALHQMGMLDSDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30622" PGL_stop="26461"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30608" e_stop="30498"/>
            <exon e_start="30399" e_stop="30234"/>
            <exon e_start="29848" e_stop="29718"/>
            <exon e_start="28537" e_stop="28461"/>
            <exon e_start="28332" e_stop="28207"/>
            <exon e_start="27236" e_stop="27049"/>
            <exon e_start="26957" e_stop="26820"/>
            <exon e_start="26722" e_stop="26461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.039" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.926" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30608" e_stop="30498" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="30497" i_stop="30400" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30399" e_stop="30234" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29848" e_stop="29718" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.039">
            <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="28537" e_stop="28461" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.926">
            <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="28332" e_stop="28207" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="27236" e_stop="27049" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26957" e_stop="26820" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26722" e_stop="26461" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30608" stop="30498"/>
              <exon start="30399" stop="30234"/>
              <exon start="29848" stop="29718"/>
              <exon start="28537" stop="28461"/>
              <exon start="28332" stop="28207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30608" stop="30498"/>
              <exon start="30399" stop="30234"/>
              <exon start="29848" stop="29718"/>
              <exon start="28537" stop="28488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30608" stop="30498"/>
              <exon start="30399" stop="30355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30607" stop="30498"/>
              <exon start="30399" stop="30234"/>
              <exon start="29848" stop="29718"/>
              <exon start="28537" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30607" stop="30498"/>
              <exon start="30399" stop="30234"/>
              <exon start="29848" stop="29718"/>
              <exon start="28537" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30607" stop="30498"/>
              <exon start="30399" stop="30234"/>
              <exon start="29848" stop="29718"/>
              <exon start="28537" stop="28466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29776" stop="29718"/>
              <exon start="28537" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28521" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28470" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28290" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28262" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28262" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27218" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="26820"/>
              <exon start="26722" stop="26461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="26820"/>
              <exon start="26722" stop="26461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAG : AAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG : GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT : GCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG : AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG : CTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAA : ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG : GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTTGTTC</gDNA_template>
            <first_frame> L  V  L  P  I  Q  E  H  *  *  Y  S  I  F  K  K  L  K  Q  H  F  F  L  L  N  G  G  I  M  C  K  A  F  *  S  I  K  :  K  V  Q  N  E  E  T  *  S  *  S  N  R  N  G  S  R  *  F  *  G  K  S  *  R  D  Q  N  Y  *  Y  P  K  T  L  *  I  L  W  N  F  S  S  L  H  L  F  R  H  L  E  Y  E  R  S   : G  T  L  *  G  Y  S  K  I  S  W  *  R  Q  K  I  *  F  I  G  D  G  F  A  R  G  T  *  K  *  Y  L  Q  V  I  E  E  H  I  G  *  Y  S  Y  :  A  F  G  K  I  S  N  A  I  C  T  T  L  C  V  W  P  Q  E  F  R  A  I  Y  K  R :   S  K  S  G  *  A  *  S  W  R  I  R  L  V  N  Q  K  K  K  R  S  S  G  Y  *  N  *  L  *  R  H  T  N  G  F  Y  F  L  S  P  L  C :   S  C  S  *  C  R  R  E  E  F  A  I  Q  T  Y  I  K  F  T  F  L  K  E  *  E  S  L  C  *  I  S  T  T  Y  C  M  V  R  R  F  K  L  *  T  P  R  H  K  F  L  S  C  *  R  S  H  P  *  K  S  P  P   : N  V  N  *  Q  R  S  T  I  T  R  S  R  K  R  R  D  F  *  W  L  L  *  R  C  I  R  F  *  T  N  L  *  I  *  Y  W  K  Q  Q  L  *  Y  K  S  Q   : G  *  S  T  I  M  D  R  Q  N  I  I  Q  D  R  Q  *  Q  C  K  C  N  F  T  F  L  *  S  H  *  K  H  T  K  L  *  S  Q  A  S  Q  S  S  S  M  L  K  I  E  K  I  I  D  I  H  I  P  H  K  *  F  V  P  K  L  N  V  F  I  K  Y  I  N  D  *  L  I  N  H  V  K  I  F  F  Y  C  C   </first_frame>
            <second_frame>  L  C  F  P  F  K  N  T  S  D  T  Q  Y  S  R  N  *  N  N  I  F  F  F  S  M  E  G  L  C  V  K  L  F  E  A  S  R :   K  Y  K  M  K  R  H  K  A  E  A  I  G  M  V  V  D  S  F  E  A  S  H  E  G  I  K  T  I  D  I  Q  K  R  C  E  F  S  G  T  S  H  L  C  I  Y  F  V  T  W  N  M  N  G  Q  :  V  P  C  E  D  I  A  K  L  V  G  E  D  R  K  Y  D  L  L  V  M  G  L  Q  E  A  P  R  N  N  I  C  K  L  L  K  N  T  L  A  D  T  H  M :   L  L  G  K  S  V  M  Q  S  V  Q  L  Y  V  F  G  P  K  N  S  E  Q  F  T  R   : E  V  K  V  D  K  H  E  V  G  G  L  G  W  L  I  R  R  K  K  G  A  V  A  I  K  I  S  Y  K  G  I  Q  M  V  F  I  S  C  H  L  S   : A  H  A  R  N  V  E  E  R  N  L  Q  F  K  H  I  S  N  S  L  F  S  K  N  K  N  P  Y  A  K  S  A  Q  L  T  V  W  L  G  D  L  N  Y  R  L  Q  G  I  N  S  Y  P  A  R  D  L  I  H  E  N  L  H  Q  :  M  L  T  S  K  D  Q  L  L  Q  E  A  E  R  G  E  I  F  N  G  Y  C  E  G  A  L  D  F  K  P  T  Y  K  Y  D  I  G  S  S  S  Y  D  T  S  H  K  :  V  R  V  P  S  W  T  D  R  I  L  F  K  I  D  S  D  N  V  N  A  T  L  H  S  Y  E  A  I  E  S  I  Q  S  S  D  H  K  P  V  K  A  H  L  C  L  K  L  K  K  *  L  I  F  I  F  L  T  N  N  L  F  Q  N  *  M  F  L  L  S  T  L  M  I  N  *  L  T  M  *  K  Y  S  F  I  V  V  </second_frame>
            <third_frame>   C  A  S  H  S  R  T  L  V  I  L  N  I  Q  E  I  K  T  T  F  F  S  S  Q  W  R  D  Y  V  *  S  F  L  K  H  Q   : E  S  T  K  *  R  D  I  K  L  K  Q  *  E  W  *  *  I  V  L  R  Q  V  M  K  G  S  K  L  L  I  S  K  N  V  V  N  S  L  E  L  L  I  F  A  S  I  S  S  L  G  I  *  T  V  R :   Y  L  V  R  I  *  Q  N  *  L  V  K  T  E  N  M  I  Y  W  *  W  V  C  K  R  H  L  E  I  I  F  A  S  Y  *  R  T  H  W  L  I  L  I   : C  F  W  E  N  Q  *  C  N  L  Y  N  S  M  C  L  A  P  R  I  Q  S  N  L  Q  E  :  K  *  K  W  I  S  M  K  L  E  D  *  V  G  *  S  E  E  K  K  E  Q  W  L  L  K  L  A  I  K  A  Y  K  W  F  L  F  L  V  T  S  L  :  L  M  L  V  M  *  K  R  G  I  C  N  S  N  I  Y  Q  I  H  F  S  Q  R  I  R  I  L  M  L  N  Q  H  N  L  L  Y  G  *  E  I  *  I  I  D  S  K  A  *  I  L  I  L  L  E  I  S  S  M  K  I  S  T  K :   C  *  L  A  K  I  N  Y  Y  K  K  Q  K  E  E  R  F  L  M  V  I  V  K  V  H  *  I  L  N  Q  L  I  N  M  I  L  E  A  A  V  M  I  Q  V  T  R :   L  E  Y  H  H  G  Q  T  E  Y  Y  S  R  *  T  V  T  M  *  M  Q  L  Y  I  L  M  K  P  L  K  A  Y  K  A  L  I  T  S  Q  S  K  L  I  Y  A  *  N  *  K  N  N  *  Y  S  Y  S  S  Q  I  I  C  S  K  I  K  C  F  Y  *  V  H  *  *  L  I  N  *  P  C  E  N  I  L  L  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30556" stop="30498"/>
                    <exon start="30399" stop="30234"/>
                    <exon start="29848" stop="29718"/>
                    <exon start="28537" stop="28461"/>
                    <exon start="28332" stop="28207"/>
                    <exon start="27236" stop="27049"/>
                    <exon start="26957" stop="26820"/>
                    <exon start="26722" stop="26570"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNIFFFSMEGLCVKLFEASRKYKMKRHKAEAIGMVVDSFEASHEGIKTIDIQKRCEFSGTSHLCIYFVTWNMNGQVPCEDIAKLVGEDRKYDLLVMGLQEAPRNNICKLLKNTLADTHMLLGKSVMQSVQLYVFGPKNSEQFTREVKVDKHEVGGLGWLIRRKKGAVAIKISYKGIQMVFISCHLSAHARNVEERNLQFKHISNSLFSKNKNPYAKSAQLTVWLGDLNYRLQGINSYPARDLIHENLHQMLTSKDQLLQEAERGEIFNGYCEGALDFKPTYKYDIGSSSYDTSHKVRVPSWTDRILFKIDSDNVNATLHSYEAIESIQSSDHKPVKAHLCLKLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30622" e_stop="30234"/>
            <exon e_start="29848" e_stop="29718"/>
            <exon e_start="28537" e_stop="28461"/>
            <exon e_start="28332" e_stop="28207"/>
            <exon e_start="27236" e_stop="27049"/>
            <exon e_start="26957" e_stop="26820"/>
            <exon e_start="26722" e_stop="26461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.039" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.926" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30622" e_stop="30234" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30233" i_stop="29849" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29848" e_stop="29718" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.039">
            <gDNA_intron_boundary i_start="29717" i_stop="28538" i_length="1180"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="28537" e_stop="28461" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.926">
            <gDNA_intron_boundary i_start="28460" i_stop="28333" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="28332" e_stop="28207" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28206" i_stop="27237" i_length="970"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="27236" e_stop="27049" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="27048" i_stop="26958" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26957" e_stop="26820" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26819" i_stop="26723" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26722" e_stop="26461" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30622" stop="30234"/>
              <exon start="29848" stop="29718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30622" stop="30239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30622" stop="30243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30621" stop="30234"/>
              <exon start="29848" stop="29718"/>
              <exon start="28537" stop="28461"/>
              <exon start="28332" stop="28320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30621" stop="30234"/>
              <exon start="29848" stop="29718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29776" stop="29718"/>
              <exon start="28537" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28521" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28470" stop="28461"/>
              <exon start="28332" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28290" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28262" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28262" stop="28207"/>
              <exon start="27236" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27218" stop="27049"/>
              <exon start="26957" stop="26820"/>
              <exon start="26722" stop="26465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="26820"/>
              <exon start="26722" stop="26461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="26820"/>
              <exon start="26722" stop="26461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTATAAACTTGTGCTTCCCATTCAAGAACACTAGTGATACTCAATATTCAAGAAATTAAAACAACATTTTTTTCTTCTCAATGGAGGGATTATGTGTAAAGCTTTTTGAAGCATCAAGGTAATTAATAATTTTTCTATATATTTCGATCCATTTTATTTGCTATATTATTACTATATAATATTCTTTTGATGAAATTAAATTATTTTTTTCTAAAGAAAGTACAAAATGAAGAGACATAAAGCTGAAGCAATAGGAATGGTAGTAGATAGTTTTGAGGCAAGTCATGAAGGGATCAAAACTATTGATATCCAAAAACGTTGTGAATTCTCTGGAACTTCTCATCTTTGCATCTATTTCGTCACTTGGAATATGAACGGTCAG : GTACCTTGTGAGGATATAGCAAAATTAGTTGGTGAAGACAGAAAATATGATTTATTGGTGATGGGTTTGCAAGAGGCACCTAGAAATAATATTTGCAAGTTATTGAAGAACACATTGGCTGATACTCATAT : GCTTTTGGGAAAATCAGTAATGCAATCTGTACAACTCTATGTGTTTGGCCCCAAGAATTCAGAGCAATTTACAAGAG : AAGTAAAAGTGGATAAGCATGAAGTTGGAGGATTAGGTTGGTTAATCAGAAGAAAAAAAGGAGCAGTGGCTATTAAAATTAGCTATAAAGGCATACAAATGGTTTTTATTTCTTGTCACCTCTCTG : CTCATGCTCGTAATGTAGAAGAGAGGAATTTGCAATTCAAACATATATCAAATTCACTTTTCTCAAAGAATAAGAATCCTTATGCTAAATCAGCACAACTTACTGTATGGTTAGGAGATTTAAATTATAGACTCCAAGGCATAAATTCTTATCCTGCTAGAGATCTCATCCATGAAAATCTCCACCAA : ATGTTAACTAGCAAAGATCAACTATTACAAGAAGCAGAAAGAGGAGAGATTTTTAATGGTTATTGTGAAGGTGCATTAGATTTTAAACCAACTTATAAATATGATATTGGAAGCAGCAGTTATGATACAAGTCACAAG : GTTAGAGTACCATCATGGACAGACAGAATATTATTCAAGATAGACAGTGACAATGTAAATGCAACTTTACATTCTTATGAAGCCATTGAAAGCATACAAAGCTCTGATCACAAGCCAGTCAAAGCTCATCTATGCTTAAAATTGAAAAAATAATTGATATTCATATTCCTCACAAATAATTTGTTCCAAAATTAAATGTTTTTATTAAGTACATTAATGATTAATTAATTAACCATGTGAAAATATTCTTTTATTGTTGTTC</gDNA_template>
            <first_frame> F  F  F  I  N  L  C  F  P  F  K  N  T  S  D  T  Q  Y  S  R  N  *  N  N  I  F  F  F  S  M  E  G  L  C  V  K  L  F  E  A  S  R  *  L  I  I  F  L  Y  I  S  I  H  F  I  C  Y  I  I  T  I  *  Y  S  F  D  E  I  K  L  F  F  S  K  E  S  T  K  *  R  D  I  K  L  K  Q  *  E  W  *  *  I  V  L  R  Q  V  M  K  G  S  K  L  L  I  S  K  N  V  V  N  S  L  E  L  L  I  F  A  S  I  S  S  L  G  I  *  T  V  R :   Y  L  V  R  I  *  Q  N  *  L  V  K  T  E  N  M  I  Y  W  *  W  V  C  K  R  H  L  E  I  I  F  A  S  Y  *  R  T  H  W  L  I  L  I   : C  F  W  E  N  Q  *  C  N  L  Y  N  S  M  C  L  A  P  R  I  Q  S  N  L  Q  E  :  K  *  K  W  I  S  M  K  L  E  D  *  V  G  *  S  E  E  K  K  E  Q  W  L  L  K  L  A  I  K  A  Y  K  W  F  L  F  L  V  T  S  L  :  L  M  L  V  M  *  K  R  G  I  C  N  S  N  I  Y  Q  I  H  F  S  Q  R  I  R  I  L  M  L  N  Q  H  N  L  L  Y  G  *  E  I  *  I  I  D  S  K  A  *  I  L  I  L  L  E  I  S  S  M  K  I  S  T  K :   C  *  L  A  K  I  N  Y  Y  K  K  Q  K  E  E  R  F  L  M  V  I  V  K  V  H  *  I  L  N  Q  L  I  N  M  I  L  E  A  A  V  M  I  Q  V  T  R :   L  E  Y  H  H  G  Q  T  E  Y  Y  S  R  *  T  V  T  M  *  M  Q  L  Y  I  L  M  K  P  L  K  A  Y  K  A  L  I  T  S  Q  S  K  L  I  Y  A  *  N  *  K  N  N  *  Y  S  Y  S  S  Q  I  I  C  S  K  I  K  C  F  Y  *  V  H  *  *  L  I  N  *  P  C  E  N  I  L  L  L  L  F </first_frame>
            <second_frame>  F  F  L  *  T  C  A  S  H  S  R  T  L  V  I  L  N  I  Q  E  I  K  T  T  F  F  S  S  Q  W  R  D  Y  V  *  S  F  L  K  H  Q  G  N  *  *  F  F  Y  I  F  R  S  I  L  F  A  I  L  L  L  Y  N  I  L  L  M  K  L  N  Y  F  F  L  K  K  V  Q  N  E  E  T  *  S  *  S  N  R  N  G  S  R  *  F  *  G  K  S  *  R  D  Q  N  Y  *  Y  P  K  T  L  *  I  L  W  N  F  S  S  L  H  L  F  R  H  L  E  Y  E  R  S   : G  T  L  *  G  Y  S  K  I  S  W  *  R  Q  K  I  *  F  I  G  D  G  F  A  R  G  T  *  K  *  Y  L  Q  V  I  E  E  H  I  G  *  Y  S  Y  :  A  F  G  K  I  S  N  A  I  C  T  T  L  C  V  W  P  Q  E  F  R  A  I  Y  K  R :   S  K  S  G  *  A  *  S  W  R  I  R  L  V  N  Q  K  K  K  R  S  S  G  Y  *  N  *  L  *  R  H  T  N  G  F  Y  F  L  S  P  L  C :   S  C  S  *  C  R  R  E  E  F  A  I  Q  T  Y  I  K  F  T  F  L  K  E  *  E  S  L  C  *  I  S  T  T  Y  C  M  V  R  R  F  K  L  *  T  P  R  H  K  F  L  S  C  *  R  S  H  P  *  K  S  P  P   : N  V  N  *  Q  R  S  T  I  T  R  S  R  K  R  R  D  F  *  W  L  L  *  R  C  I  R  F  *  T  N  L  *  I  *  Y  W  K  Q  Q  L  *  Y  K  S  Q   : G  *  S  T  I  M  D  R  Q  N  I  I  Q  D  R  Q  *  Q  C  K  C  N  F  T  F  L  *  S  H  *  K  H  T  K  L  *  S  Q  A  S  Q  S  S  S  M  L  K  I  E  K  I  I  D  I  H  I  P  H  K  *  F  V  P  K  L  N  V  F  I  K  Y  I  N  D  *  L  I  N  H  V  K  I  F  F  Y  C  C   </second_frame>
            <third_frame>   F  F  Y  K  L  V  L  P  I  Q  E  H  *  *  Y  S  I  F  K  K  L  K  Q  H  F  F  L  L  N  G  G  I  M  C  K  A  F  *  S  I  K  V  I  N  N  F  S  I  Y  F  D  P  F  Y  L  L  Y  Y  Y  Y  I  I  F  F  *  *  N  *  I  I  F  F  *  R  K  Y  K  M  K  R  H  K  A  E  A  I  G  M  V  V  D  S  F  E  A  S  H  E  G  I  K  T  I  D  I  Q  K  R  C  E  F  S  G  T  S  H  L  C  I  Y  F  V  T  W  N  M  N  G  Q  :  V  P  C  E  D  I  A  K  L  V  G  E  D  R  K  Y  D  L  L  V  M  G  L  Q  E  A  P  R  N  N  I  C  K  L  L  K  N  T  L  A  D  T  H  M :   L  L  G  K  S  V  M  Q  S  V  Q  L  Y  V  F  G  P  K  N  S  E  Q  F  T  R   : E  V  K  V  D  K  H  E  V  G  G  L  G  W  L  I  R  R  K  K  G  A  V  A  I  K  I  S  Y  K  G  I  Q  M  V  F  I  S  C  H  L  S   : A  H  A  R  N  V  E  E  R  N  L  Q  F  K  H  I  S  N  S  L  F  S  K  N  K  N  P  Y  A  K  S  A  Q  L  T  V  W  L  G  D  L  N  Y  R  L  Q  G  I  N  S  Y  P  A  R  D  L  I  H  E  N  L  H  Q  :  M  L  T  S  K  D  Q  L  L  Q  E  A  E  R  G  E  I  F  N  G  Y  C  E  G  A  L  D  F  K  P  T  Y  K  Y  D  I  G  S  S  S  Y  D  T  S  H  K  :  V  R  V  P  S  W  T  D  R  I  L  F  K  I  D  S  D  N  V  N  A  T  L  H  S  Y  E  A  I  E  S  I  Q  S  S  D  H  K  P  V  K  A  H  L  C  L  K  L  K  K  *  L  I  F  I  F  L  T  N  N  L  F  Q  N  *  M  F  L  L  S  T  L  M  I  N  *  L  T  M  *  K  Y  S  F  I  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30401" stop="30234"/>
                    <exon start="29848" stop="29718"/>
                    <exon start="28537" stop="28461"/>
                    <exon start="28332" stop="28207"/>
                    <exon start="27236" stop="27049"/>
                    <exon start="26957" stop="26820"/>
                    <exon start="26722" stop="26570"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKYKMKRHKAEAIGMVVDSFEASHEGIKTIDIQKRCEFSGTSHLCIYFVTWNMNGQVPCEDIAKLVGEDRKYDLLVMGLQEAPRNNICKLLKNTLADTHMLLGKSVMQSVQLYVFGPKNSEQFTREVKVDKHEVGGLGWLIRRKKGAVAIKISYKGIQMVFISCHLSAHARNVEERNLQFKHISNSLFSKNKNPYAKSAQLTVWLGDLNYRLQGINSYPARDLIHENLHQMLTSKDQLLQEAERGEIFNGYCEGALDFKPTYKYDIGSSSYDTSHKVRVPSWTDRILFKIDSDNVNATLHSYEAIESIQSSDHKPVKAHLCLKLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="34248" PGL_stop="37764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34248" e_stop="34351"/>
            <exon e_start="36745" e_stop="37285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34248" e_stop="34351" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34352" i_stop="36744" i_length="2393"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="36745" e_stop="37285" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34248" stop="34351"/>
              <exon start="36745" stop="37285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACAGGACGGGGAGTACTATGCTATGTAGTAGTTCACACATCATTTGCTTCCATTTTTTCCGGCGTAACAGATTTACCAAATTCATCCGCCTGAAACAAAG : GTGGAGCTGCAAAAATCTTCAAAAAGAGCTTTATTTGGACCTTTGAGGCATGACATTTTTTACAATCTCTTTACAAAAAAATGAGTGTAATGGTACGTCATGTGCTTCTTTCATAGTAACTGTGTAATGTGATAAAATGAACCATTTAATTTGCTTTCTTTCATTGTTCTCACTGATGTGTGCTTCTTTCGACATTTTCTGACGATAATTAGTCCCCTAGTTTTCAATTTATGTGCTACAGTGCTTGACAGAGTAAAGTACTGCATTTACCTTTTGAGTTAATTTACTATAATTTCTGGCCCAATTATAGTGGTCAACATCAACCACTCGGCCTCGATTGCATGATGACGTTGTGCAATGGGAAAAATAATTGCAATGGCTAAATGGTGATGTGAAAGATCAGCCATCCCTTAAATCTGTGTTTGTGATGAAATCCTCTCCCAGAAGAGTTCGAATGGCCATTCCCGCCCCTTGAGCATTACCAAGTAAATGACTACTTTAATCGTAGACATTGATCATAATTGGTTAAAAATTGGCCAGC</gDNA_template>
            <first_frame> *  N  R  T  G  S  T  M  L  C  S  S  S  H  I  I  C  F  H  F  F  R  R  N  R  F  T  K  F  I  R  L  K  Q  R :   W  S  C  K  N  L  Q  K  E  L  Y  L  D  L  *  G  M  T  F  F  T  I  S  L  Q  K  N  E  C  N  G  T  S  C  A  S  F  I  V  T  V  *  C  D  K  M  N  H  L  I  C  F  L  S  L  F  S  L  M  C  A  S  F  D  I  F  *  R  *  L  V  P  *  F  S  I  Y  V  L  Q  C  L  T  E  *  S  T  A  F  T  F  *  V  N  L  L  *  F  L  A  Q  L  *  W  S  T  S  T  T  R  P  R  L  H  D  D  V  V  Q  W  E  K  *  L  Q  W  L  N  G  D  V  K  D  Q  P  S  L  K  S  V  F  V  M  K  S  S  P  R  R  V  R  M  A  I  P  A  P  *  A  L  P  S  K  *  L  L  *  S  *  T  L  I  I  I  G  *  K  L  A  S </first_frame>
            <second_frame>  K  T  G  R  G  V  L  C  Y  V  V  V  H  T  S  F  A  S  I  F  S  G  V  T  D  L  P  N  S  S  A  *  N  K   : G  G  A  A  K  I  F  K  K  S  F  I  W  T  F  E  A  *  H  F  L  Q  S  L  Y  K  K  M  S  V  M  V  R  H  V  L  L  S  *  *  L  C  N  V  I  K  *  T  I  *  F  A  F  F  H  C  S  H  *  C  V  L  L  S  T  F  S  D  D  N  *  S  P  S  F  Q  F  M  C  Y  S  A  *  Q  S  K  V  L  H  L  P  F  E  L  I  Y  Y  N  F  W  P  N  Y  S  G  Q  H  Q  P  L  G  L  D  C  M  M  T  L  C  N  G  K  N  N  C  N  G  *  M  V  M  *  K  I  S  H  P  L  N  L  C  L  *  *  N  P  L  P  E  E  F  E  W  P  F  P  P  L  E  H  Y  Q  V  N  D  Y  F  N  R  R  H  *  S  *  L  V  K  N  W  P   </second_frame>
            <third_frame>   K  Q  D  G  E  Y  Y  A  M  *  *  F  T  H  H  L  L  P  F  F  P  A  *  Q  I  Y  Q  I  H  P  P  E  T  K  :  V  E  L  Q  K  S  S  K  R  A  L  F  G  P  L  R  H  D  I  F  Y  N  L  F  T  K  K  *  V  *  W  Y  V  M  C  F  F  H  S  N  C  V  M  *  *  N  E  P  F  N  L  L  S  F  I  V  L  T  D  V  C  F  F  R  H  F  L  T  I  I  S  P  L  V  F  N  L  C  A  T  V  L  D  R  V  K  Y  C  I  Y  L  L  S  *  F  T  I  I  S  G  P  I  I  V  V  N  I  N  H  S  A  S  I  A  *  *  R  C  A  M  G  K  I  I  A  M  A  K  W  *  C  E  R  S  A  I  P  *  I  C  V  C  D  E  I  L  S  Q  K  S  S  N  G  H  S  R  P  L  S  I  T  K  *  M  T  T  L  I  V  D  I  D  H  N  W  L  K  I  G  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0223O22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34258" e_stop="34351"/>
            <exon e_start="34656" e_stop="34755"/>
            <exon e_start="36578" e_stop="36660"/>
            <exon e_start="36745" e_stop="36836"/>
            <exon e_start="37533" e_stop="37764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.634" e_score="1.000"/>
          <exon-intron don_prob="0.269" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.719" acc_prob="0.981" e_score="0.978"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34258" e_stop="34351" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.932">
            <gDNA_intron_boundary i_start="34352" i_stop="34655" i_length="304"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34656" e_stop="34755" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.634">
            <gDNA_intron_boundary i_start="34756" i_stop="36577" i_length="1822"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="36578" e_stop="36660" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.269" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36661" i_stop="36744" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="36745" e_stop="36836" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.719" acc_prob="0.981">
            <gDNA_intron_boundary i_start="36837" i_stop="37532" i_length="696"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="37533" e_stop="37764" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34258" stop="34351"/>
              <exon start="34656" stop="34755"/>
              <exon start="36578" stop="36660"/>
              <exon start="36745" stop="36836"/>
              <exon start="37533" stop="37764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGGAGTACTATGCTATGTAGTAGTTCACACATCATTTGCTTCCATTTTTTCCGGCGTAACAGATTTACCAAATTCATCCGCCTGAAACAAAG : GATTAATGATGGTTAATTAGAGGGTTGTAGCTTCTGATGTATAACTTGTTTGTGATCCACGACCATTTGTTCTGCCATTGCTCTATGTGAAGTGATTTAG : ACCATACGAGTTTGTTGGTGAAGGAGTGAGCAGTTCTTACGGATAATATTGAAGAGCACAGTTGAATGATATGCAAAGCGGCG : GTGGAGCTGCAAAAATCTTCAAAAAGAGCTTTATTTGGACCTTTGAGGCATGACATTTTTTACAATCTCTTTACAAAAAAATGAGTGTAATG : AAGCAACATATACCATCCAATTTCCTTTGCAATGCAGAACTTGAGGTGGACGATATCAGCAACTTACCAGCCCAGATTGTCGACAAGATTCTGTCTCATTTGTCACTTAGGGATGCTGTGAGGACAAGTGTCTTGTCAAGTAAATGGAGAAACAAATGGGTTACTCTTCCAAACCTTGTATTTGACAATCAATCTCTTTTGATCTCATCCCAAGACCAAACCTTCATAAAAA</gDNA_template>
            <first_frame> R  G  V  L  C  Y  V  V  V  H  T  S  F  A  S  I  F  S  G  V  T  D  L  P  N  S  S  A  *  N  K   : G  L  M  M  V  N  *  R  V  V  A  S  D  V  *  L  V  C  D  P  R  P  F  V  L  P  L  L  Y  V  K  *  F  R :   P  Y  E  F  V  G  E  G  V  S  S  S  Y  G  *  Y  *  R  A  Q  L  N  D  M  Q  S  G   : G  G  A  A  K  I  F  K  K  S  F  I  W  T  F  E  A  *  H  F  L  Q  S  L  Y  K  K  M  S  V  M  :  K  Q  H  I  P  S  N  F  L  C  N  A  E  L  E  V  D  D  I  S  N  L  P  A  Q  I  V  D  K  I  L  S  H  L  S  L  R  D  A  V  R  T  S  V  L  S  S  K  W  R  N  K  W  V  T  L  P  N  L  V  F  D  N  Q  S  L  L  I  S  S  Q  D  Q  T  F  I  K  </first_frame>
            <second_frame>  G  E  Y  Y  A  M  *  *  F  T  H  H  L  L  P  F  F  P  A  *  Q  I  Y  Q  I  H  P  P  E  T  K  :  D  *  *  W  L  I  R  G  L  *  L  L  M  Y  N  L  F  V  I  H  D  H  L  F  C  H  C  S  M  *  S  D  L   : D  H  T  S  L  L  V  K  E  *  A  V  L  T  D  N  I  E  E  H  S  *  M  I  C  K  A  A  :  V  E  L  Q  K  S  S  K  R  A  L  F  G  P  L  R  H  D  I  F  Y  N  L  F  T  K  K  *  V  *  * :   S  N  I  Y  H  P  I  S  F  A  M  Q  N  L  R  W  T  I  S  A  T  Y  Q  P  R  L  S  T  R  F  C  L  I  C  H  L  G  M  L  *  G  Q  V  S  C  Q  V  N  G  E  T  N  G  L  L  F  Q  T  L  Y  L  T  I  N  L  F  *  S  H  P  K  T  K  P  S  *  K </second_frame>
            <third_frame>   G  S  T  M  L  C  S  S  S  H  I  I  C  F  H  F  F  R  R  N  R  F  T  K  F  I  R  L  K  Q  R :   I  N  D  G  *  L  E  G  C  S  F  *  C  I  T  C  L  *  S  T  T  I  C  S  A  I  A  L  C  E  V  I  *  :  T  I  R  V  C  W  *  R  S  E  Q  F  L  R  I  I  L  K  S  T  V  E  *  Y  A  K  R  R :   W  S  C  K  N  L  Q  K  E  L  Y  L  D  L  *  G  M  T  F  F  T  I  S  L  Q  K  N  E  C  N   : E  A  T  Y  T  I  Q  F  P  L  Q  C  R  T  *  G  G  R  Y  Q  Q  L  T  S  P  D  C  R  Q  D  S  V  S  F  V  T  *  G  C  C  E  D  K  C  L  V  K  *  M  E  K  Q  M  G  Y  S  S  K  P  C  I  *  Q  S  I  S  F  D  L  I  P  R  P  N  L  H  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36798" stop="36836"/>
                    <exon start="37533" stop="37763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFLQSLYKKMSVMKQHIPSNFLCNAELEVDDISNLPAQIVDKILSHLSLRDAVRTSVLSSKWRNKWVTLPNLVFDNQSLLISSQDQTFIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40341" PGL_stop="42851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40341" e_stop="40708"/>
            <exon e_start="42060" e_stop="42348"/>
            <exon e_start="42449" e_stop="42486"/>
            <exon e_start="42618" e_stop="42851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40341" e_stop="40708" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="42060" e_stop="42348" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42449" e_stop="42486" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="42618" e_stop="42851" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40341" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40341" stop="40575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40350" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40351" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40352" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40352" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40352" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40353" stop="40708"/>
              <exon start="42060" stop="42156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216985" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40355" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40356" stop="40708"/>
              <exon start="42060" stop="42236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40357" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40357" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40359" stop="40708"/>
              <exon start="42060" stop="42246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40359" stop="40708"/>
              <exon start="42060" stop="42201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40360" stop="40708"/>
              <exon start="42060" stop="42245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42098" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42145" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42201" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42220" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGATAGATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG : GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG : GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG : ATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAAGGAAC</gDNA_template>
            <first_frame> D  R  *  I  E  S  R  K  W  R  F  P  W  L  L  L  L  H  L  L  L  P  F  H  F  L  L  R  F  L  K  N  P  M  L  Y  P  L  L  I  R  S  N  S  L  S  L  S  L  P  K  S  L  R  L  *  C  Q  L  L  L  L  K  H  R  R  R  R  N  W  K  P  E  R  I  F  *  S  L  *  K  V  D  F  L  E  V  S  L  H  S  L  F  L  E  L  V  D  V  K  V  L  V  L  V  L  F  F  R  K  V  L  E  K  S  S  S  T  I  V  M  L  R :   N  I  F  K  E  I  H  Y  G  F  N  M  S  K  L  H  W  P  L  *  D  M  R  L  V  M  T  F  L  S  R  W  K  A  V  V  F  L  G  R  L  K  Q  F  P  L  A  L  L  V  H  S  *  R  L  A  R  A  I  E  N  H  *  G  R  R  V  C  *  L  E  M  P  E  L  L  S  G  R  K  L  V  S  R  R  L  A  S  V  H  N  F  P  S  V  E  :  V  G  T  Y  S  L  W  Q  H  L  V  E  R :   F  G  G  L  L  T  Q  I  G  K  K  E  H  I  N  D  L  F  *  L  L  K  M  R  K  C  F  *  I  I  I  L  N  C  F  F  V  K  I  L  Y  *  S  L  L  R  I  T  I  C  S  V  D  G  I  F  *  V  *  F  L  V  Q  C  L  I  *  F  W  R  F  L  C  L  K  K  G   </first_frame>
            <second_frame>  I  D  R  *  R  V  E  N  G  D  F  R  G  F  S  C  F  I  F  C  F  P  F  I  F  F  S  D  F  S  K  T  L  C  C  I  P  C  S  F  E  A  I  L  F  L  S  R  F  Q  N  L  Y  A  C  S  V  S  F  C  C  *  S  T  G  D  G  G  I  G  N  Q  R  E  S  F  E  A  C  E  K  *  T  S  W  R  F  R  C  T  A  Y  F  W  N  W  *  T  *  K  C  *  C  S  C  C  S  S  G  R  F  W  K  N  H  H  Q  L  S  *  C  *   : G  I  S  S  R  K  S  I  M  D  S  I  C  Q  N  S  T  G  H  F  R  I  *  G  *  L  *  H  F  C  Q  G  G  R  R  W  S  F  W  A  G  S  S  N  F  P  W  H  C  S  C  T  P  K  G  *  R  E  P  *  K  T  I  E  G  G  G  S  V  N  *  R  C  Q  S  C  *  A  E  E  S  W  S  Q  E  G  S  Q  A  S  T  I  F  Q  A  L  R :   L  V  L  T  H  C  G  S  I  W  *  K   : D  L  V  V  Y  *  P  R  L  G  K  K  S  I  S  M  I  C  F  D  C  *  R  *  E  N  V  S  E  L  S  S  S  I  A  S  L  *  K  F  C  I  S  P  Y  S  E  L  Q  F  V  L  L  M  V  F  F  E  F  S  F  L  F  N  V  *  Y  N  S  G  D  F  C  A  *  K  K  E  </second_frame>
            <third_frame>   *  I  D  R  E  S  K  M  A  I  S  V  A  S  L  A  S  S  F  A  S  L  S  F  S  S  Q  I  S  Q  K  P  Y  A  V  S  L  A  H  S  K  Q  F  S  F  S  L  A  S  K  I  S  T  L  V  V  S  A  S  V  A  E  A  P  E  T  E  E  L  E  T  R  E  N  L  L  K  L  V  K  S  R  L  P  G  G  F  A  A  Q  P  I  F  G  T  G  R  R  K  S  A  S  A  R  V  V  L  Q  E  G  S  G  K  I  I  I  N  Y  R  D  A  K  :  E  Y  L  Q  G  N  P  L  W  I  Q  Y  V  K  T  P  L  A  T  L  G  Y  E  A  S  Y  D  I  F  V  K  V  E  G  G  G  L  S  G  Q  A  Q  A  I  S  L  G  I  A  R  A  L  L  K  V  S  E  S  H  R  K  P  L  R  E  E  G  L  L  T  R  D  A  R  V  V  E  R  K  K  V  G  L  K  K  A  R  K  R  P  Q  F  S  K  R  *   : G  W  Y  L  L  T  V  A  A  F  G  R  K  :  I  W  W  F  I  D  P  D  W  E  K  R  A  Y  Q  *  S  V  L  T  V  E  D  E  K  M  F  L  N  Y  H  P  Q  L  L  L  C  K  N  F  V  L  V  P  T  Q  N  Y  N  L  F  C  *  W  Y  F  L  S  L  V  S  C  S  M  F  N  I  I  L  E  I  F  V  P  K  K  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40346" stop="40708"/>
                    <exon start="42060" stop="42347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDRESKMAISVASLASSFASLSFSSQISQKPYAVSLAHSKQFSFSLASKISTLVVSASVAEAPETEELETRENLLKLVKSRLPGGFAAQPIFGTGRRKSASARVVLQEGSGKIIINYRDAKEYLQGNPLWIQYVKTPLATLGYEASYDIFVKVEGGGLSGQAQAISLGIARALLKVSESHRKPLREEGLLTRDARVVERKKVGLKKARKRPQFSKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="43335" PGL_stop="44819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43335" e_stop="43629"/>
            <exon e_start="44208" e_stop="44240"/>
            <exon e_start="44330" e_stop="44609"/>
            <exon e_start="44728" e_stop="44819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.882" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="0.970"/>
          <exon-intron don_prob="0.866" acc_prob="0.848" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43335" e_stop="43629" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.882" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43630" i_stop="44207" i_length="578"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="44208" e_stop="44240" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="44241" i_stop="44329" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44330" e_stop="44609" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.866" acc_prob="0.848">
            <gDNA_intron_boundary i_start="44610" i_stop="44727" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44728" e_stop="44819" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43335" stop="43629"/>
              <exon start="44208" stop="44240"/>
              <exon start="44330" stop="44609"/>
              <exon start="44728" stop="44819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAATTTATCTCTTTTTTGGAGGGGTTACTTGCTTTCCCCTCCAAAAAAATCAATATTGGTGACGAATTAAAAAAAGAGAATGTGCAGAATCCCATTCTAATTTTTTTTTTCTAAGTTTCCATTTTTGTGCAACTTTGAGGTATTTTGATTTTTTGGGTTGTCATAAATATGGATGACATATATGGCAGTGATGAAGACTACTATAATGGAGAATACGAGGATGATTATGATCGTGACCCGGAACCCGAATCTGATGATGATTTATCTTGTGGCAAAGCTCCTTCATGCAGG : GTAATAAAGAAAGAATCCCTTTTAGCAGCACAG : AAAGAAGATCTACAGAGAGTAGTAGACTTGCTTTCTCTGAAAGAACATCATGCACGAACGTTGCTTATTCATTATCAATGGGATGTCGATAAGGTCTTTGCAATTTTTGTTGAAAGAGGGAAAGAAAGATTGTTTGTAGAAGCTGGTATAACACTAGAGGAGAAAAATGAGAATCCTTCCTCCGACCCCTCAACCGAATATACATGTGAAATTTGCTTTGAGGATTTCCCTGATGAGCAAACGACGTTGATGGAATGCAATCATAGGTTTTGCAATGATT : GTTGGACAGAGTATTTCGTAGTAAAGATAAATGATGGTAAGAGTAGACGTGTAACATGCATGGCTCAGAAATGCAAAGCGATATGTGATGAA</gDNA_template>
            <first_frame> K  K  I  Y  L  F  F  G  G  V  T  C  F  P  L  Q  K  N  Q  Y  W  *  R  I  K  K  R  E  C  A  E  S  H  S  N  F  F  F  L  S  F  H  F  C  A  T  L  R  Y  F  D  F  L  G  C  H  K  Y  G  *  H  I  W  Q  *  *  R  L  L  *  W  R  I  R  G  *  L  *  S  *  P  G  T  R  I  *  *  *  F  I  L  W  Q  S  S  F  M  Q   : G  N  K  E  R  I  P  F  S  S  T   : E  R  R  S  T  E  S  S  R  L  A  F  S  E  R  T  S  C  T  N  V  A  Y  S  L  S  M  G  C  R  *  G  L  C  N  F  C  *  K  R  E  R  K  I  V  C  R  S  W  Y  N  T  R  G  E  K  *  E  S  F  L  R  P  L  N  R  I  Y  M  *  N  L  L  *  G  F  P  *  *  A  N  D  V  D  G  M  Q  S  *  V  L  Q  *  L :   L  D  R  V  F  R  S  K  D  K  *  W  *  E  *  T  C  N  M  H  G  S  E  M  Q  S  D  M  *  *  </first_frame>
            <second_frame>  K  K  F  I  S  F  L  E  G  L  L  A  F  P  S  K  K  I  N  I  G  D  E  L  K  K  E  N  V  Q  N  P  I  L  I  F  F  F  *  V  S  I  F  V  Q  L  *  G  I  L  I  F  W  V  V  I  N  M  D  D  I  Y  G  S  D  E  D  Y  Y  N  G  E  Y  E  D  D  Y  D  R  D  P  E  P  E  S  D  D  D  L  S  C  G  K  A  P  S  C  R  :  V  I  K  K  E  S  L  L  A  A  Q  :  K  E  D  L  Q  R  V  V  D  L  L  S  L  K  E  H  H  A  R  T  L  L  I  H  Y  Q  W  D  V  D  K  V  F  A  I  F  V  E  R  G  K  E  R  L  F  V  E  A  G  I  T  L  E  E  K  N  E  N  P  S  S  D  P  S  T  E  Y  T  C  E  I  C  F  E  D  F  P  D  E  Q  T  T  L  M  E  C  N  H  R  F  C  N  D   : C  W  T  E  Y  F  V  V  K  I  N  D  G  K  S  R  R  V  T  C  M  A  Q  K  C  K  A  I  C  D  E </second_frame>
            <third_frame>   K  N  L  S  L  F  W  R  G  Y  L  L  S  P  P  K  K  S  I  L  V  T  N  *  K  K  R  M  C  R  I  P  F  *  F  F  F  S  K  F  P  F  L  C  N  F  E  V  F  *  F  F  G  L  S  *  I  W  M  T  Y  M  A  V  M  K  T  T  I  M  E  N  T  R  M  I  M  I  V  T  R  N  P  N  L  M  M  I  Y  L  V  A  K  L  L  H  A  G :   *  *  R  K  N  P  F  *  Q  H  R :   K  K  I  Y  R  E  *  *  T  C  F  L  *  K  N  I  M  H  E  R  C  L  F  I  I  N  G  M  S  I  R  S  L  Q  F  L  L  K  E  G  K  K  D  C  L  *  K  L  V  *  H  *  R  R  K  M  R  I  L  P  P  T  P  Q  P  N  I  H  V  K  F  A  L  R  I  S  L  M  S  K  R  R  *  W  N  A  I  I  G  F  A  M  I  :  V  G  Q  S  I  S  *  *  R  *  M  M  V  R  V  D  V  *  H  A  W  L  R  N  A  K  R  Y  V  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43477" stop="43629"/>
                    <exon start="44208" stop="44240"/>
                    <exon start="44330" stop="44609"/>
                    <exon start="44728" stop="44819"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILIFWVVINMDDIYGSDEDYYNGEYEDDYDRDPEPESDDDLSCGKAPSCRVIKKESLLAAQKEDLQRVVDLLSLKEHHARTLLIHYQWDVDKVFAIFVERGKERLFVEAGITLEEKNENPSSDPSTEYTCEICFEDFPDEQTTLMECNHRFCNDCWTEYFVVKINDGKSRRVTCMAQKCKAICDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45043" PGL_stop="46163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45043" e_stop="45208"/>
            <exon e_start="45294" e_stop="45842"/>
            <exon e_start="45919" e_stop="46163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.663" acc_prob="0.941" e_score="0.988"/>
          <exon-intron don_prob="0.921" acc_prob="0.995" e_score="0.996"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="45043" e_stop="45208" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.663" acc_prob="0.941">
            <gDNA_intron_boundary i_start="45209" i_stop="45293" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="45294" e_stop="45842" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45843" i_stop="45918" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="45919" e_stop="46163" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45043" stop="45208"/>
              <exon start="45294" stop="45770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45517" stop="45842"/>
              <exon start="45919" stop="46163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363020" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45583" stop="45842"/>
              <exon start="45919" stop="46163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362968" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTCGTGTGTTATGTGGGACCTTTGGCTTAAGAAGTGCGACGATGAAGCTCCCACTGTCAATTGGTTATCAGAGAAAACTAAGCATTGTCCAAAATGTCATAAAATTGTGGAGAAGGATGGAGGATGCAACCTGGTACAGTGTATATGTGGACAGCCATTTTG : TTGGCTCTGTGGTGAAGCTACTGGATTTGAACACACATGGAATAGTATAGCAGGTCACACTTGTGGCAGATACAAAGAAAATCATTTGAAAAGTGAGGAGGATTCTGTAGAGGACTATTGGCGTCTTACTCACTATTATAGTCGTTATAAGGCTCATATTGGTTCGTTGAAGATTGAAGCATCTGAATCGAAGCAAAAAATACTTGATAAAGTCCATAGCCTTGAATCAAAGGAGTTCCAGTTAAAAGATTTCAGCTGGGCAATGAGTGGATTTTATAGACTCGCCTTATCAAGGCGAGTTCTCGCCTGTTCCTATCCATTTGCATACTACTATTTTGGAGCTCTGTTTGCAAATGAAATAACAAAAGAAGAACGCGAAATAAAACAGAACCTCTTTGAGGATCAACAGCAGCAACTTGAAACAAATATCGAAAGGCTTTCAATGTTCTTGGAAGAGCCATTTGGTAGCTATGCTGAAGATAAGCTTGTTGAGACAAGAATGAAGATTATTACTCTCTCCACAGTAACTGATGACCTCTGCAAAAACTT : GTACGAGTGCATTGACAACGATTTGCTAGTTCCTTTACAACAAGCAACTCATACAATAGTTCGTTATAGATCCAATGGTGTGGAAAAAGCATCAGAACTATAGGTAGGTACAGATATACTATGTAATGCTTCTTTACTATTGAGCGCGACTGCAGGTTGCATTGAACGTTGATCATTTGGATCGCGTTGTTCTGGCTTGATGCTTCTTCCAACTTGTTGTTTAAACACTATCAATCAATTCAATT</gDNA_template>
            <first_frame> L  V  R  V  L  C  G  T  F  G  L  R  S  A  T  M  K  L  P  L  S  I  G  Y  Q  R  K  L  S  I  V  Q  N  V  I  K  L  W  R  R  M  E  D  A  T  W  Y  S  V  Y  V  D  S  H  F   : V  G  S  V  V  K  L  L  D  L  N  T  H  G  I  V  *  Q  V  T  L  V  A  D  T  K  K  I  I  *  K  V  R  R  I  L  *  R  T  I  G  V  L  L  T  I  I  V  V  I  R  L  I  L  V  R  *  R  L  K  H  L  N  R  S  K  K  Y  L  I  K  S  I  A  L  N  Q  R  S  S  S  *  K  I  S  A  G  Q  *  V  D  F  I  D  S  P  Y  Q  G  E  F  S  P  V  P  I  H  L  H  T  T  I  L  E  L  C  L  Q  M  K  *  Q  K  K  N  A  K  *  N  R  T  S  L  R  I  N  S  S  N  L  K  Q  I  S  K  G  F  Q  C  S  W  K  S  H  L  V  A  M  L  K  I  S  L  L  R  Q  E  *  R  L  L  L  S  P  Q  *  L  M  T  S  A  K  T   : C  T  S  A  L  T  T  I  C  *  F  L  Y  N  K  Q  L  I  Q  *  F  V  I  D  P  M  V  W  K  K  H  Q  N  Y  R  *  V  Q  I  Y  Y  V  M  L  L  Y  Y  *  A  R  L  Q  V  A  L  N  V  D  H  L  D  R  V  V  L  A  *  C  F  F  Q  L  V  V  *  T  L  S  I  N  S  I </first_frame>
            <second_frame>  L  F  V  C  Y  V  G  P  L  A  *  E  V  R  R  *  S  S  H  C  Q  L  V  I  R  E  N  *  A  L  S  K  M  S  *  N  C  G  E  G  W  R  M  Q  P  G  T  V  Y  M  W  T  A  I  L  :  L  A  L  W  *  S  Y  W  I  *  T  H  M  E  *  Y  S  R  S  H  L  W  Q  I  Q  R  K  S  F  E  K  *  G  G  F  C  R  G  L  L  A  S  Y  S  L  L  *  S  L  *  G  S  Y  W  F  V  E  D  *  S  I  *  I  E  A  K  N  T  *  *  S  P  *  P  *  I  K  G  V  P  V  K  R  F  Q  L  G  N  E  W  I  L  *  T  R  L  I  K  A  S  S  R  L  F  L  S  I  C  I  L  L  F  W  S  S  V  C  K  *  N  N  K  R  R  T  R  N  K  T  E  P  L  *  G  S  T  A  A  T  *  N  K  Y  R  K  A  F  N  V  L  G  R  A  I  W  *  L  C  *  R  *  A  C  *  D  K  N  E  D  Y  Y  S  L  H  S  N  *  *  P  L  Q  K  L  :  V  R  V  H  *  Q  R  F  A  S  S  F  T  T  S  N  S  Y  N  S  S  L  *  I  Q  W  C  G  K  S  I  R  T  I  G  R  Y  R  Y  T  M  *  C  F  F  T  I  E  R  D  C  R  L  H  *  T  L  I  I  W  I  A  L  F  W  L  D  A  S  S  N  L  L  F  K  H  Y  Q  S  I  Q   </second_frame>
            <third_frame>   C  S  C  V  M  W  D  L  W  L  K  K  C  D  D  E  A  P  T  V  N  W  L  S  E  K  T  K  H  C  P  K  C  H  K  I  V  E  K  D  G  G  C  N  L  V  Q  C  I  C  G  Q  P  F  C :   W  L  C  G  E  A  T  G  F  E  H  T  W  N  S  I  A  G  H  T  C  G  R  Y  K  E  N  H  L  K  S  E  E  D  S  V  E  D  Y  W  R  L  T  H  Y  Y  S  R  Y  K  A  H  I  G  S  L  K  I  E  A  S  E  S  K  Q  K  I  L  D  K  V  H  S  L  E  S  K  E  F  Q  L  K  D  F  S  W  A  M  S  G  F  Y  R  L  A  L  S  R  R  V  L  A  C  S  Y  P  F  A  Y  Y  Y  F  G  A  L  F  A  N  E  I  T  K  E  E  R  E  I  K  Q  N  L  F  E  D  Q  Q  Q  Q  L  E  T  N  I  E  R  L  S  M  F  L  E  E  P  F  G  S  Y  A  E  D  K  L  V  E  T  R  M  K  I  I  T  L  S  T  V  T  D  D  L  C  K  N  L :   Y  E  C  I  D  N  D  L  L  V  P  L  Q  Q  A  T  H  T  I  V  R  Y  R  S  N  G  V  E  K  A  S  E  L  *  V  G  T  D  I  L  C  N  A  S  L  L  L  S  A  T  A  G  C  I  E  R  *  S  F  G  S  R  C  S  G  L  M  L  L  P  T  C  C  L  N  T  I  N  Q  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45045" stop="45208"/>
                    <exon start="45294" stop="45842"/>
                    <exon start="45919" stop="46021"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSCVMWDLWLKKCDDEAPTVNWLSEKTKHCPKCHKIVEKDGGCNLVQCICGQPFCWLCGEATGFEHTWNSIAGHTCGRYKENHLKSEEDSVEDYWRLTHYYSRYKAHIGSLKIEASESKQKILDKVHSLESKEFQLKDFSWAMSGFYRLALSRRVLACSYPFAYYYFGALFANEITKEEREIKQNLFEDQQQQLETNIERLSMFLEEPFGSYAEDKLVETRMKIITLSTVTDDLCKNLYECIDNDLLVPLQQATHTIVRYRSNGVEKASEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47529" PGL_stop="51660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47529" e_stop="47962"/>
            <exon e_start="49313" e_stop="49527"/>
            <exon e_start="49636" e_stop="49815"/>
            <exon e_start="49971" e_stop="50126"/>
            <exon e_start="50468" e_stop="50744"/>
            <exon e_start="50896" e_stop="51660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.070" acc_prob="0.957" e_score="0.981"/>
          <exon-intron don_prob="0.911" acc_prob="0.992" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.833" e_score="0.993"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="47529" e_stop="47962" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47963" i_stop="49312" i_length="1350"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="49313" e_stop="49527" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.070" acc_prob="0.957">
            <gDNA_intron_boundary i_start="49528" i_stop="49635" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="49636" e_stop="49815" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49816" i_stop="49970" i_length="155"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49971" e_stop="50126" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.834">
            <gDNA_intron_boundary i_start="50127" i_stop="50467" i_length="341"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="50468" e_stop="50744" e_length="277"/>
          </exon>
          <intron i_serial="5" don_prob="0.757" acc_prob="0.833">
            <gDNA_intron_boundary i_start="50745" i_stop="50895" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="50896" e_stop="51660" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47529" stop="47962"/>
              <exon start="49313" stop="49527"/>
              <exon start="49636" stop="49696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47530" stop="47941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49386" stop="49527"/>
              <exon start="49636" stop="49815"/>
              <exon start="49971" stop="50126"/>
              <exon start="50468" stop="50744"/>
              <exon start="50896" stop="51002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50592" stop="50744"/>
              <exon start="50896" stop="51325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51032" stop="51660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTACTGACGACGTCGTCTCGACTGCACTGCTTAATCTCCGTCTAGTCGCCGCCGTTCAATGTCGTCATCGTCGTCGATGTTAAACAACAGTGTCTCCATTACTGTCTCCGACGACGAGCCCGACGAATTTGCAAACAAGCTTAGGGCACGAGCTCGTAGGAAGAGAAAGAAATATGCCCTCCGAGGCAAAACTGGTTTCTCTCATATTGTCCTGAAAAAGCTCCTTAGGTGGTGGCCTTTTCTGCTATTCTTACTTGCAGCAGGTCTTCTTATCTTTGAAGCCTCTCGAATTGGAAGAAGACCTAGTTCGGTTGTTAAAAATTCGAATCCAGTGACTGGAAATAAAACTGATAAGGTTGTTGAGAAGAAACCGCCGACGAACTTGAATCGCCTTGATCTAGTGACTCATGTCGTGCATGGAGTTAGAGAAC : CTTGCTTGAAGTTACTACCAGCTGAAGGACTTGAGCATCTTGATTTCCCCATGGATAAAGTACCTGCCGATCCTATTAAACAGGTGGTATACATCACAGAGGCCAATCCTGCTTCTCTAGATGATGGAATGCCATTTGAGCAACACTCGGGGGCGTCAAGATTTAATTTATTCACAGGAAACCAAACTCTCAAGCAAAGGGATGAAAGTTTTAAG : GTGAAAGGAGCGGGTGCATCCATCCACTGTGGTTTTTACAGTGATAAAGGAGGCTTTAGGATTTCTGTTGAAGATAGAAGTTATATGGAATCCTGCAAAGCTGTGGTGTCAACTTGTGCATTTGGTGGTGGAGATGATCTCTATCAACCTATAGGAATGTCAGAGTCATCTCTCAAGAAG : GTTTGCTTTGTGGCTTTTTGGGATGAAATTACACTTGCATCACAAGAGGCAGATGGTCATAAAGTTGGTGATGACCGTTACATCGGAAAGTGGCGCATCATCCTGGTTAAGAATCTACCATTCACAGACCAAAGGTTGAATGGTAAAATCCCAAAG : ATGCTGGCCCATCGTCTCTTTCCAAATTCTAGATATTCCATTTGGGTAGACTCAAAGTCCCAACTTAGGAGGGATCCATTGGGTGTGTTGGAGGCTCTGCTTTGGCGTTCAAACTCTGTACTAGCAATCTCGGAACATGGAGCTCGGAGTAGTGTGTATGATGAGGCAAAGGCTGTTGTCAAGAAAAATAAAGCCACTCCAGAGGAAGTGGCCGTGCAGATAGCTCAGTACCGTCAAGATGGACTCCCCGAGGATAAGAGATTCAATGGGAAAAAAG : CTCTATCTGAGGCTTCAATTATTGTGAGAGAGCACACCCCATCAACTAATCTGCTCATGTGCTTATGGTTCAATGAGGTGGTTCGCTTTACATCCCGTGATCAACTGAGTTTTCCATATGTCCTTTGGCGGTTTAAAGAGTTCAAGAATATCAACATGTTTCCTGTTTGTACACGCAAGGATCTCGTCAATAGCATGGGTCACATAAGAAAAGCAAAGCCTCTAACAGGTTGATGTATATTCTTGGTTTGCACGAGAATGGATAGCCGAAACAACAACACCCAGTCTTTCTCCAAGTTTCAAGCATATTTGCTTCCTCTGTGATATGTGCTAATGACATTCAATAGAGAGATCAGATAGGATTAGCATATTCCTATTTGTTCTTCAGAATTCAAAGGGCACTGTTTTTTCGAAGCCCTGGTGGGAATGGGATAGAGAGAGCCCGAAAAGGTTTCATCGTACGAAAGAAGAAAAATGCAGTGATGGTATGTTGTGCATTTGAACAAACTAGCCTTCTTTAGGAGGGTCTTTTTTTTAACCTATTTATAATTCTTTTGTTGACCTACGTACACTGTTAAAATTGTGGTGAGTTTTATCAAATGTGAAGCACCAAATTTTTAGCTCTCTTGAATTAGTGCAAGATTTGCTGTAAACTATCATGTAAAGTATTTGATTGGATATTTAGTTACTCAATTGTATGTGAAAACTTAGCACTATGTTGTGTCTAGAGTGAGTAACATTTCTATACAAACTACCCCTTTGTGTA</gDNA_template>
            <first_frame> K  L  L  T  T  S  S  R  L  H  C  L  I  S  V  *  S  P  P  F  N  V  V  I  V  V  D  V  K  Q  Q  C  L  H  Y  C  L  R  R  R  A  R  R  I  C  K  Q  A  *  G  T  S  S  *  E  E  K  E  I  C  P  P  R  Q  N  W  F  L  S  Y  C  P  E  K  A  P  *  V  V  A  F  S  A  I  L  T  C  S  R  S  S  Y  L  *  S  L  S  N  W  K  K  T  *  F  G  C  *  K  F  E  S  S  D  W  K  *  N  *  *  G  C  *  E  E  T  A  D  E  L  E  S  P  *  S  S  D  S  C  R  A  W  S  *  R  T :   L  L  E  V  T  T  S  *  R  T  *  A  S  *  F  P  H  G  *  S  T  C  R  S  Y  *  T  G  G  I  H  H  R  G  Q  S  C  F  S  R  *  W  N  A  I  *  A  T  L  G  G  V  K  I  *  F  I  H  R  K  P  N  S  Q  A  K  G  *  K  F  *   : G  E  R  S  G  C  I  H  P  L  W  F  L  Q  *  *  R  R  L  *  D  F  C  *  R  *  K  L  Y  G  I  L  Q  S  C  G  V  N  L  C  I  W  W  W  R  *  S  L  S  T  Y  R  N  V  R  V  I  S  Q  E   : G  L  L  C  G  F  L  G  *  N  Y  T  C  I  T  R  G  R  W  S  *  S  W  *  *  P  L  H  R  K  V  A  H  H  P  G  *  E  S  T  I  H  R  P  K  V  E  W  *  N  P  K   : D  A  G  P  S  S  L  S  K  F  *  I  F  H  L  G  R  L  K  V  P  T  *  E  G  S  I  G  C  V  G  G  S  A  L  A  F  K  L  C  T  S  N  L  G  T  W  S  S  E  *  C  V  *  *  G  K  G  C  C  Q  E  K  *  S  H  S  R  G  S  G  R  A  D  S  S  V  P  S  R  W  T  P  R  G  *  E  I  Q  W  E  K  S :   S  I  *  G  F  N  Y  C  E  R  A  H  P  I  N  *  S  A  H  V  L  M  V  Q  *  G  G  S  L  Y  I  P  *  S  T  E  F  S  I  C  P  L  A  V  *  R  V  Q  E  Y  Q  H  V  S  C  L  Y  T  Q  G  S  R  Q  *  H  G  S  H  K  K  S  K  A  S  N  R  L  M  Y  I  L  G  L  H  E  N  G  *  P  K  Q  Q  H  P  V  F  L  Q  V  S  S  I  F  A  S  S  V  I  C  A  N  D  I  Q  *  R  D  Q  I  G  L  A  Y  S  Y  L  F  F  R  I  Q  R  A  L  F  F  R  S  P  G  G  N  G  I  E  R  A  R  K  G  F  I  V  R  K  K  K  N  A  V  M  V  C  C  A  F  E  Q  T  S  L  L  *  E  G  L  F  F  N  L  F  I  I  L  L  L  T  Y  V  H  C  *  N  C  G  E  F  Y  Q  M  *  S  T  K  F  L  A  L  L  N  *  C  K  I  C  C  K  L  S  C  K  V  F  D  W  I  F  S  Y  S  I  V  C  E  N  L  A  L  C  C  V  *  S  E  *  H  F  Y  T  N  Y  P  F  V   </first_frame>
            <second_frame>  S  Y  *  R  R  R  L  D  C  T  A  *  S  P  S  S  R  R  R  S  M  S  S  S  S  S  M  L  N  N  S  V  S  I  T  V  S  D  D  E  P  D  E  F  A  N  K  L  R  A  R  A  R  R  K  R  K  K  Y  A  L  R  G  K  T  G  F  S  H  I  V  L  K  K  L  L  R  W  W  P  F  L  L  F  L  L  A  A  G  L  L  I  F  E  A  S  R  I  G  R  R  P  S  S  V  V  K  N  S  N  P  V  T  G  N  K  T  D  K  V  V  E  K  K  P  P  T  N  L  N  R  L  D  L  V  T  H  V  V  H  G  V  R  E   : P  C  L  K  L  L  P  A  E  G  L  E  H  L  D  F  P  M  D  K  V  P  A  D  P  I  K  Q  V  V  Y  I  T  E  A  N  P  A  S  L  D  D  G  M  P  F  E  Q  H  S  G  A  S  R  F  N  L  F  T  G  N  Q  T  L  K  Q  R  D  E  S  F  K  :  V  K  G  A  G  A  S  I  H  C  G  F  Y  S  D  K  G  G  F  R  I  S  V  E  D  R  S  Y  M  E  S  C  K  A  V  V  S  T  C  A  F  G  G  G  D  D  L  Y  Q  P  I  G  M  S  E  S  S  L  K  K  :  V  C  F  V  A  F  W  D  E  I  T  L  A  S  Q  E  A  D  G  H  K  V  G  D  D  R  Y  I  G  K  W  R  I  I  L  V  K  N  L  P  F  T  D  Q  R  L  N  G  K  I  P  K  :  M  L  A  H  R  L  F  P  N  S  R  Y  S  I  W  V  D  S  K  S  Q  L  R  R  D  P  L  G  V  L  E  A  L  L  W  R  S  N  S  V  L  A  I  S  E  H  G  A  R  S  S  V  Y  D  E  A  K  A  V  V  K  K  N  K  A  T  P  E  E  V  A  V  Q  I  A  Q  Y  R  Q  D  G  L  P  E  D  K  R  F  N  G  K  K   : A  L  S  E  A  S  I  I  V  R  E  H  T  P  S  T  N  L  L  M  C  L  W  F  N  E  V  V  R  F  T  S  R  D  Q  L  S  F  P  Y  V  L  W  R  F  K  E  F  K  N  I  N  M  F  P  V  C  T  R  K  D  L  V  N  S  M  G  H  I  R  K  A  K  P  L  T  G  *  C  I  F  L  V  C  T  R  M  D  S  R  N  N  N  T  Q  S  F  S  K  F  Q  A  Y  L  L  P  L  *  Y  V  L  M  T  F  N  R  E  I  R  *  D  *  H  I  P  I  C  S  S  E  F  K  G  H  C  F  F  E  A  L  V  G  M  G  *  R  E  P  E  K  V  S  S  Y  E  R  R  K  M  Q  *  W  Y  V  V  H  L  N  K  L  A  F  F  R  R  V  F  F  L  T  Y  L  *  F  F  C  *  P  T  Y  T  V  K  I  V  V  S  F  I  K  C  E  A  P  N  F  *  L  S  *  I  S  A  R  F  A  V  N  Y  H  V  K  Y  L  I  G  Y  L  V  T  Q  L  Y  V  K  T  *  H  Y  V  V  S  R  V  S  N  I  S  I  Q  T  T  P  L  C  </second_frame>
            <third_frame>   A  T  D  D  V  V  S  T  A  L  L  N  L  R  L  V  A  A  V  Q  C  R  H  R  R  R  C  *  T  T  V  S  P  L  L  S  P  T  T  S  P  T  N  L  Q  T  S  L  G  H  E  L  V  G  R  E  R  N  M  P  S  E  A  K  L  V  S  L  I  L  S  *  K  S  S  L  G  G  G  L  F  C  Y  S  Y  L  Q  Q  V  F  L  S  L  K  P  L  E  L  E  E  D  L  V  R  L  L  K  I  R  I  Q  *  L  E  I  K  L  I  R  L  L  R  R  N  R  R  R  T  *  I  A  L  I  *  *  L  M  S  C  M  E  L  E  N  :  L  A  *  S  Y  Y  Q  L  K  D  L  S  I  L  I  S  P  W  I  K  Y  L  P  I  L  L  N  R  W  Y  T  S  Q  R  P  I  L  L  L  *  M  M  E  C  H  L  S  N  T  R  G  R  Q  D  L  I  Y  S  Q  E  T  K  L  S  S  K  G  M  K  V  L  R :   *  K  E  R  V  H  P  S  T  V  V  F  T  V  I  K  E  A  L  G  F  L  L  K  I  E  V  I  W  N  P  A  K  L  W  C  Q  L  V  H  L  V  V  E  M  I  S  I  N  L  *  E  C  Q  S  H  L  S  R  R :   F  A  L  W  L  F  G  M  K  L  H  L  H  H  K  R  Q  M  V  I  K  L  V  M  T  V  T  S  E  S  G  A  S  S  W  L  R  I  Y  H  S  Q  T  K  G  *  M  V  K  S  Q  R :   C  W  P  I  V  S  F  Q  I  L  D  I  P  F  G  *  T  Q  S  P  N  L  G  G  I  H  W  V  C  W  R  L  C  F  G  V  Q  T  L  Y  *  Q  S  R  N  M  E  L  G  V  V  C  M  M  R  Q  R  L  L  S  R  K  I  K  P  L  Q  R  K  W  P  C  R  *  L  S  T  V  K  M  D  S  P  R  I  R  D  S  M  G  K  K  :  L  Y  L  R  L  Q  L  L  *  E  S  T  P  H  Q  L  I  C  S  C  A  Y  G  S  M  R  W  F  A  L  H  P  V  I  N  *  V  F  H  M  S  F  G  G  L  K  S  S  R  I  S  T  C  F  L  F  V  H  A  R  I  S  S  I  A  W  V  T  *  E  K  Q  S  L  *  Q  V  D  V  Y  S  W  F  A  R  E  W  I  A  E  T  T  T  P  S  L  S  P  S  F  K  H  I  C  F  L  C  D  M  C  *  *  H  S  I  E  R  S  D  R  I  S  I  F  L  F  V  L  Q  N  S  K  G  T  V  F  S  K  P  W  W  E  W  D  R  E  S  P  K  R  F  H  R  T  K  E  E  K  C  S  D  G  M  L  C  I  *  T  N  *  P  S  L  G  G  S  F  F  *  P  I  Y  N  S  F  V  D  L  R  T  L  L  K  L  W  *  V  L  S  N  V  K  H  Q  I  F  S  S  L  E  L  V  Q  D  L  L  *  T  I  M  *  S  I  *  L  D  I  *  L  L  N  C  M  *  K  L  S  T  M  L  C  L  E  *  V  T  F  L  Y  K  L  P  L  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47566" stop="47962"/>
                    <exon start="49313" stop="49527"/>
                    <exon start="49636" stop="49815"/>
                    <exon start="49971" stop="50126"/>
                    <exon start="50468" stop="50744"/>
                    <exon start="50896" stop="51128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSSRRRSMSSSSSMLNNSVSITVSDDEPDEFANKLRARARRKRKKYALRGKTGFSHIVLKKLLRWWPFLLFLLAAGLLIFEASRIGRRPSSVVKNSNPVTGNKTDKVVEKKPPTNLNRLDLVTHVVHGVREPCLKLLPAEGLEHLDFPMDKVPADPIKQVVYITEANPASLDDGMPFEQHSGASRFNLFTGNQTLKQRDESFKVKGAGASIHCGFYSDKGGFRISVEDRSYMESCKAVVSTCAFGGGDDLYQPIGMSESSLKKVCFVAFWDEITLASQEADGHKVGDDRYIGKWRIILVKNLPFTDQRLNGKIPKMLAHRLFPNSRYSIWVDSKSQLRRDPLGVLEALLWRSNSVLAISEHGARSSVYDEAKAVVKKNKATPEEVAVQIAQYRQDGLPEDKRFNGKKALSEASIIVREHTPSTNLLMCLWFNEVVRFTSRDQLSFPYVLWRFKEFKNINMFPVCTRKDLVNSMGHIRKAKPLTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="53661" PGL_stop="51787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53661" e_stop="53316"/>
            <exon e_start="52679" e_stop="52602"/>
            <exon e_start="52508" e_stop="52409"/>
            <exon e_start="52284" e_stop="51787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.032" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53661" e_stop="53316" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53315" i_stop="52680" i_length="636"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52679" e_stop="52602" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.032">
            <gDNA_intron_boundary i_start="52601" i_stop="52509" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52508" e_stop="52409" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.976">
            <gDNA_intron_boundary i_start="52408" i_stop="52285" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="52284" e_stop="51787" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53661" stop="53316"/>
              <exon start="52679" stop="52602"/>
              <exon start="52508" stop="52409"/>
              <exon start="52284" stop="52075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53660" stop="53316"/>
              <exon start="52679" stop="52602"/>
              <exon start="52508" stop="52490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53653" stop="53316"/>
              <exon start="52679" stop="52602"/>
              <exon start="52508" stop="52409"/>
              <exon start="52284" stop="52174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53653" stop="53316"/>
              <exon start="52679" stop="52602"/>
              <exon start="52508" stop="52409"/>
              <exon start="52284" stop="52219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53486" stop="53316"/>
              <exon start="52679" stop="52602"/>
              <exon start="52508" stop="52409"/>
              <exon start="52284" stop="51787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGCGATAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATATTGGTGGCCAGAATCAGTATTATTCTTTGACGAATAATTATTCGTTACGATTTAAATGTTTGAGTAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTTGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAAATTGAAAAATTTACTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTCCTCCATTGAAAAG : GGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAG : GGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACCTTGGACATGTAGTGCAGCTATTAATCGAAGCTATCG : ATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTGTCAGGCAAAAAGTTGTATTATTTTCAAACACTTCCATCATTAATGGGAATGAAATCAGTAATGCAAGCAAAAGCAAGAATAGGACATGCACTTATAATGTTACTTCAAGTTGGAGTATTGGAGAAGTTCAAGAACATACCTGTGGTTAATGGATTGGATCTTGCTTGTTTTGCTGCTGCTGTTTTTGTTTCATCTATTTGTGTTTTCATTCTTTCTAGGCTTGCTGCCACTAACACAAAGGCTGGAGACTAAGAAAAATGCACATTTTTACACTATATGTATAAAGCAAGAAAAAAAAATTATAAGCAAAAAATAGGTCTTAGGACTTGTTGTAGTTGGCCTTATTATTTAACATAAATATTCTTTCAATTTGTAACAATTAAATACATTT</gDNA_template>
            <first_frame> N  G  D  K  W  *  I  V  T  Y  L  *  A  N  G  L  R  *  Q  Y  W  W  P  E  S  V  L  F  F  D  E  *  L  F  V  T  I  *  M  F  E  *  R  *  T  Y  W  R  S  R  E  E  G  S  S  C  S  N  *  G  C  W  Y  C  G  C  I  *  T  N  Y  Y  T  K  L  E  D  F  R  C  K  F  S  R  R  *  C  I  R  S  H  I  S  K  I  E  K  F  T  Q  T  N  A  A  E  I  A  S  F  T  V  L  H  *  K   : G  Y  F  G  L  P  V  L  Q  S  F  S  S  C  R  D  I  D  W  F  I  I  M  L  Y  *   : G  L  L  L  N  H  R  V  I  H  P  L  F  Y  R  N  L  T  *  I  R  P  W  T  C  S  A  A  I  N  R  S  Y  R :   Y  V  S  I  G  D  C  Y  A  Y  I  W  N  G  I  V  C  H  V  C  G  I  K  K  Y  *  C  *  R  R  *  *  *  S  I  V  R  Q  K  V  V  L  F  S  N  T  S  I  I  N  G  N  E  I  S  N  A  S  K  S  K  N  R  T  C  T  Y  N  V  T  S  S  W  S  I  G  E  V  Q  E  H  T  C  G  *  W  I  G  S  C  L  F  C  C  C  C  F  C  F  I  Y  L  C  F  H  S  F  *  A  C  C  H  *  H  K  G  W  R  L  R  K  M  H  I  F  T  L  Y  V  *  S  K  K  K  K  L  *  A  K  N  R  S  *  D  L  L  *  L  A  L  L  F  N  I  N  I  L  S  I  C  N  N  *  I  H   </first_frame>
            <second_frame>  M  A  I  N  G  R  L  L  R  T  S  K  Q  M  G  L  G  N  N  I  G  G  Q  N  Q  Y  Y  S  L  T  N  N  Y  S  L  R  F  K  C  L  S  K  G  R  L  I  G  G  A  E  K  K  V  V  V  V  A  T  K  A  V  G  T  A  V  V  S  E  P  I  T  T  Q  N  W  K  I  S  D  V  S  L  V  A  D  N  V  S  D  L  I  F  Q  K  L  K  N  L  L  K  Q  M  P  Q  K  L  H  H  L  Q  S  S  I  E  K  :  G  I  L  D  C  R  F  F  S  L  L  A  V  A  G  T  L  I  G  S  L  L  C  F  I  E  :  G  C  Y  L  I  I  E  S  Y  I  H  Y  F  I  A  I  S  H  K  S  D  L  G  H  V  V  Q  L  L  I  E  A  I   : D  M  F  L  L  G  T  A  M  L  T  F  G  M  G  L  Y  V  M  F  V  G  S  R  N  I  N  V  K  G  D  D  D  D  Q  L  S  G  K  K  L  Y  Y  F  Q  T  L  P  S  L  M  G  M  K  S  V  M  Q  A  K  A  R  I  G  H  A  L  I  M  L  L  Q  V  G  V  L  E  K  F  K  N  I  P  V  V  N  G  L  D  L  A  C  F  A  A  A  V  F  V  S  S  I  C  V  F  I  L  S  R  L  A  A  T  N  T  K  A  G  D  *  E  K  C  T  F  L  H  Y  M  Y  K  A  R  K  K  N  Y  K  Q  K  I  G  L  R  T  C  C  S  W  P  Y  Y  L  T  *  I  F  F  Q  F  V  T  I  K  Y  I  </second_frame>
            <third_frame>   W  R  *  M  V  D  C  Y  V  P  L  S  K  W  A  *  V  T  I  L  V  A  R  I  S  I  I  L  *  R  I  I  I  R  Y  D  L  N  V  *  V  K  V  D  L  L  A  E  Q  R  R  R  *  *  L  *  Q  L  R  L  L  V  L  R  L  Y  L  N  Q  L  L  H  K  I  G  R  F  Q  M  *  V  *  S  Q  I  M  Y  Q  I  S  Y  F  K  N  *  K  I  Y  S  N  K  C  R  R  N  C  I  I  Y  S  P  P  L  K  R :   V  F  W  I  A  G  S  S  V  F  *  Q  L  Q  G  H  *  L  V  H  Y  Y  A  L  L  R :   V  V  T  *  S  *  S  H  T  S  T  I  L  S  Q  S  H  I  N  Q  T  L  D  M  *  C  S  Y  *  S  K  L  S  :  I  C  F  Y  W  G  L  L  C  L  H  L  E  W  D  C  M  S  C  L  W  D  Q  E  I  L  M  L  K  E  M  M  M  I  N  C  Q  A  K  S  C  I  I  F  K  H  F  H  H  *  W  E  *  N  Q  *  C  K  Q  K  Q  E  *  D  M  H  L  *  C  Y  F  K  L  E  Y  W  R  S  S  R  T  Y  L  W  L  M  D  W  I  L  L  V  L  L  L  L  F  L  F  H  L  F  V  F  S  F  F  L  G  L  L  P  L  T  Q  R  L  E  T  K  K  N  A  H  F  Y  T  I  C  I  K  Q  E  K  K  I  I  S  K  K  *  V  L  G  L  V  V  V  G  L  I  I  *  H  K  Y  S  F  N  L  *  Q  L  N  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53660" stop="53316"/>
                    <exon start="52679" stop="52602"/>
                    <exon start="52508" stop="52409"/>
                    <exon start="52284" stop="51926"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAINGRLLRTSKQMGLGNNIGGQNQYYSLTNNYSLRFKCLSKGRLIGGAEKKVVVVATKAVGTAVVSEPITTQNWKISDVSLVADNVSDLIFQKLKNLLKQMPQKLHHLQSSIEKGILDCRFFSLLAVAGTLIGSLLCFIEGCYLIIESYIHYFIAISHKSDLGHVVQLLIEAIDMFLLGTAMLTFGMGLYVMFVGSRNINVKGDDDDQLSGKKLYYFQTLPSLMGMKSVMQAKARIGHALIMLLQVGVLEKFKNIPVVNGLDLACFAAAVFVSSICVFILSRLAATNTKAGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="55286" PGL_stop="56721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55286" e_stop="55424"/>
            <exon e_start="55535" e_stop="55773"/>
            <exon e_start="56104" e_stop="56254"/>
            <exon e_start="56573" e_stop="56721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.489" e_score="0.928"/>
          <exon-intron don_prob="1.000" acc_prob="0.831" e_score="0.992"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="0.993"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="55286" e_stop="55424" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.489">
            <gDNA_intron_boundary i_start="55425" i_stop="55534" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="55535" e_stop="55773" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="55774" i_stop="56103" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="56104" e_stop="56254" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="56255" i_stop="56572" i_length="318"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="56573" e_stop="56721" e_length="149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55286" stop="55424"/>
              <exon start="55535" stop="55773"/>
              <exon start="56104" stop="56254"/>
              <exon start="56573" stop="56721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATGGTTGTTTTCACAAATTCGATGTTCTGTTCAATTCCGCCATGGAAACTGAGAAACCCATCGAAGATTAAGGAACATTCTAGTACAGCTATACTCAAAAGCCCGACTTTGACAAGCTGTCAAGCCAAAAGATG : AGTTAGTTCCATATGCTAAAGCATGGTCCTGGCAAAAGACTATTGTTGATGAGAGGAAAGCACAAATTGAAAGGAATGAGGATCTTGCTGACACACTCATTGTGTTGCAGCATCAGCCGGTTTATACGTTGGGTACTGGTAGCTCTGAAGAGAATATACATTTTGATGTAAAGAAGGCTCCTTTTGAATTGTATCGAACAGAACGTGGTGGTGAAGTTACTTACCATGGCCCTGGTCAG : CTAGTTATGTACCCCATCATCAATCTTCGGTATCATAAGATGGACCTTCATTGGTACCTCAGGAGCCTTGAGGAGGTGATCATACGAGTTCTTTCTTCATCATTTTCTATGGAGGCTTCAAGAATTGATGGCCTAACCGGTGTTTGGGTTG : GGGGTCAGAAATTAGCTGCAATTGGCATTCGAGTATCTCAATGGGTCACCTATCATGGCCTGGCTCTCAATGTCACCACAGATCTGGCACCCTTTCAACAGATAGTTCCATGTGGGATCCGTGACCGTCAAGTTGGAAGCATAAAGGGA</gDNA_template>
            <first_frame> Q  K  W  L  F  S  Q  I  R  C  S  V  Q  F  R  H  G  N  *  E  T  H  R  R  L  R  N  I  L  V  Q  L  Y  S  K  A  R  L  *  Q  A  V  K  P  K  D   : E  L  V  P  Y  A  K  A  W  S  W  Q  K  T  I  V  D  E  R  K  A  Q  I  E  R  N  E  D  L  A  D  T  L  I  V  L  Q  H  Q  P  V  Y  T  L  G  T  G  S  S  E  E  N  I  H  F  D  V  K  K  A  P  F  E  L  Y  R  T  E  R  G  G  E  V  T  Y  H  G  P  G  Q  :  L  V  M  Y  P  I  I  N  L  R  Y  H  K  M  D  L  H  W  Y  L  R  S  L  E  E  V  I  I  R  V  L  S  S  S  F  S  M  E  A  S  R  I  D  G  L  T  G  V  W  V   : G  G  Q  K  L  A  A  I  G  I  R  V  S  Q  W  V  T  Y  H  G  L  A  L  N  V  T  T  D  L  A  P  F  Q  Q  I  V  P  C  G  I  R  D  R  Q  V  G  S  I  K  G </first_frame>
            <second_frame>  R  N  G  C  F  H  K  F  D  V  L  F  N  S  A  M  E  T  E  K  P  I  E  D  *  G  T  F  *  Y  S  Y  T  Q  K  P  D  F  D  K  L  S  S  Q  K  M  :  S  *  F  H  M  L  K  H  G  P  G  K  R  L  L  L  M  R  G  K  H  K  L  K  G  M  R  I  L  L  T  H  S  L  C  C  S  I  S  R  F  I  R  W  V  L  V  A  L  K  R  I  Y  I  L  M  *  R  R  L  L  L  N  C  I  E  Q  N  V  V  V  K  L  L  T  M  A  L  V  S :   *  L  C  T  P  S  S  I  F  G  I  I  R  W  T  F  I  G  T  S  G  A  L  R  R  *  S  Y  E  F  F  L  H  H  F  L  W  R  L  Q  E  L  M  A  *  P  V  F  G  L  :  G  V  R  N  *  L  Q  L  A  F  E  Y  L  N  G  S  P  I  M  A  W  L  S  M  S  P  Q  I  W  H  P  F  N  R  *  F  H  V  G  S  V  T  V  K  L  E  A  *  R   </second_frame>
            <third_frame>   E  M  V  V  F  T  N  S  M  F  C  S  I  P  P  W  K  L  R  N  P  S  K  I  K  E  H  S  S  T  A  I  L  K  S  P  T  L  T  S  C  Q  A  K  R  * :   V  S  S  I  C  *  S  M  V  L  A  K  D  Y  C  *  *  E  E  S  T  N  *  K  E  *  G  S  C  *  H  T  H  C  V  A  A  S  A  G  L  Y  V  G  Y  W  *  L  *  R  E  Y  T  F  *  C  K  E  G  S  F  *  I  V  S  N  R  T  W  W  *  S  Y  L  P  W  P  W  S   : A  S  Y  V  P  H  H  Q  S  S  V  S  *  D  G  P  S  L  V  P  Q  E  P  *  G  G  D  H  T  S  S  F  F  I  I  F  Y  G  G  F  K  N  *  W  P  N  R  C  L  G  W :   G  S  E  I  S  C  N  W  H  S  S  I  S  M  G  H  L  S  W  P  G  S  Q  C  H  H  R  S  G  T  L  S  T  D  S  S  M  W  D  P  *  P  S  S  W  K  H  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55403" stop="55424"/>
                    <exon start="55535" stop="55773"/>
                    <exon start="56104" stop="56254"/>
                    <exon start="56573" stop="56721"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAVKPKDELVPYAKAWSWQKTIVDERKAQIERNEDLADTLIVLQHQPVYTLGTGSSEENIHFDVKKAPFELYRTERGGEVTYHGPGQLVMYPIINLRYHKMDLHWYLRSLEEVIIRVLSSSFSMEASRIDGLTGVWVGGQKLAAIGIRVSQWVTYHGLALNVTTDLAPFQQIVPCGIRDRQVGSIKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="64414" PGL_stop="66418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64414" e_stop="66261"/>
            <exon e_start="66402" e_stop="66418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.731" e_score="0.997"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="64414" e_stop="66261" e_length="1848"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.731">
            <gDNA_intron_boundary i_start="66262" i_stop="66401" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="0.706">
            <gDNA_exon_boundary e_start="66402" e_stop="66418" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64414" stop="66261"/>
              <exon start="66402" stop="66418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64436" stop="65236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64540" stop="64869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64589" stop="65299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64776" stop="65167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAACTCAACCTTCGCTTGTTGAACAAAAGTCAAGAGTTCAATTCTTGATTTTTTTCTAATAGAAATGGCATCAACTTCTCTTTCTCTTCCTTCTCTTAAGCTACAATTCCCCTCGCATACATCATCATCTTCTCGTAAAAATTCATCGTCTTATCGTGTTAGTATTCGTCCCATTCAGGCTTCGGTGTCTGAGATACCACCTTACATTTCATCACCATCACAATCACCATCATCATCGTCATCACCACCTGTTAAACAAGCGAAACTCCCAGCCCAAAAAGTCCCTGGAGATTATGGACTACCATTAGTTGGTCCATGGAAAGACAGACTTGATTACTTCTACAATCAGGGCAAAAATGAATTCTTCAAATCAAGAATTCAGAAGCATCAGTCTACTGTTTTTCGAACGAACATGCCACCAGGTCCATTCATTTCATTCAATCCAAACGTTGTTGTTTTGCTAGATGGTAAAAGTTTCCCCGTACTTTTTGATGTATCTAAAGTTGAAAAAAAGGATCTTTTCACCGGTACTTTCATGCCATCCACTGATCTCACAGGCGGTTATCGAGTTCTATCCTATCTTGATCCTTCTGAACCAAACCATGCCAAATTGAAGAAACTCATGTTTTATCTCCTTTCATCACGACGCAATGAAGTTATTCCAGAGTTTCACAATAGCTACTCCGAGCTATTTGAAACTCTGGAAAACGAACTCTCCACGAAAGGTAAAGCTGGGCTCAATGCAGCAAATGATCAAGCTGCATTTAACTTCCTGGCTAGGTCTTTATATGGCATTAATCCTCAAGACACCGAACTTGGAACCGATGGACCTAAGTTGATCGGAAAATGGGTGCTGTTCCAGCTTCATCCTTTGCTAATTCTCGGCCTCCCAAAGGTTCTTGAAGACCTTGTTATGCATACTTTCAGACTTCCCCCTGCCTTGGTGAAAAAAGATTACCAGAGATTGTACAATTTCTTCTACGAAAACTCAACTTCAGTTCTTGATGAAGCAGAAAAAATTGGTATTTCTCGGGAAGAAGCTTGTCATAATTTGCTATTCGCGACATGTTTCAATTCATTCGGAGGAATCAAAATCTTTTTCCCGAATATGTTGAAATGGATAGGCAGAGCAGGGGCTAAACTCCACAGTCAATTAGCACAAGAAATTCGTTCAGTCATTTCATCAAACAGTGGGAAGGTCACAATGGCTGCCATGGAAAAAATGCCACTAATGAAATCAGTAGTCTACGAATCCCTCAGAATTGAACCTCCGGTAGCATCACAATACGGCAGAGCAAAACACGACATGGTAATTGAATCCCACGACGCATCATTCGAAATCAAAGAAGGTGAACTCCTTTATGGGTATCAACCATTTGCAACTAAAGACCCAAAAATCTTCGATCGATCGGAAGAATTCGTCGCCGATCGGTTCATCGGAGAAGAAGGGGAGAAGCTGTTGAAACACGTGTTATGGTCAAATGGGTCGGAAACTGAAAACGCATCGATAAATAACAAACAGTGTGCCGGAAAAGACTTCGTCGTACTGGTTTCAAGATTGTTGCTGGTCGAACTGTTCCTCCGATATGATTCGTTTGAGATTGAAGTCGGTGCATCTCCATTAGGAGCTGCAATTACCTTAACTTCTCTGAGAAGAGCCAGTTTTTGATGAACACTGGCTTAATTAAGAAATTAGTAATCTTGTTTAGTGTATTATATTTCATTGTTGTGTTATTAAGAAATAATTAATTTACAGAACAGAGCATGCCGGCCAGCCGGCGGCGGTAATTGAGGAAGAGGCCGGTGATGTGTATAGTTTAGTATAGTAAATATTTTTTGTTGGAAA : AAGAAGAAACAATAATA</gDNA_template>
            <first_frame> L  N  S  T  F  A  C  *  T  K  V  K  S  S  I  L  D  F  F  L  I  E  M  A  S  T  S  L  S  L  P  S  L  K  L  Q  F  P  S  H  T  S  S  S  S  R  K  N  S  S  S  Y  R  V  S  I  R  P  I  Q  A  S  V  S  E  I  P  P  Y  I  S  S  P  S  Q  S  P  S  S  S  S  S  P  P  V  K  Q  A  K  L  P  A  Q  K  V  P  G  D  Y  G  L  P  L  V  G  P  W  K  D  R  L  D  Y  F  Y  N  Q  G  K  N  E  F  F  K  S  R  I  Q  K  H  Q  S  T  V  F  R  T  N  M  P  P  G  P  F  I  S  F  N  P  N  V  V  V  L  L  D  G  K  S  F  P  V  L  F  D  V  S  K  V  E  K  K  D  L  F  T  G  T  F  M  P  S  T  D  L  T  G  G  Y  R  V  L  S  Y  L  D  P  S  E  P  N  H  A  K  L  K  K  L  M  F  Y  L  L  S  S  R  R  N  E  V  I  P  E  F  H  N  S  Y  S  E  L  F  E  T  L  E  N  E  L  S  T  K  G  K  A  G  L  N  A  A  N  D  Q  A  A  F  N  F  L  A  R  S  L  Y  G  I  N  P  Q  D  T  E  L  G  T  D  G  P  K  L  I  G  K  W  V  L  F  Q  L  H  P  L  L  I  L  G  L  P  K  V  L  E  D  L  V  M  H  T  F  R  L  P  P  A  L  V  K  K  D  Y  Q  R  L  Y  N  F  F  Y  E  N  S  T  S  V  L  D  E  A  E  K  I  G  I  S  R  E  E  A  C  H  N  L  L  F  A  T  C  F  N  S  F  G  G  I  K  I  F  F  P  N  M  L  K  W  I  G  R  A  G  A  K  L  H  S  Q  L  A  Q  E  I  R  S  V  I  S  S  N  S  G  K  V  T  M  A  A  M  E  K  M  P  L  M  K  S  V  V  Y  E  S  L  R  I  E  P  P  V  A  S  Q  Y  G  R  A  K  H  D  M  V  I  E  S  H  D  A  S  F  E  I  K  E  G  E  L  L  Y  G  Y  Q  P  F  A  T  K  D  P  K  I  F  D  R  S  E  E  F  V  A  D  R  F  I  G  E  E  G  E  K  L  L  K  H  V  L  W  S  N  G  S  E  T  E  N  A  S  I  N  N  K  Q  C  A  G  K  D  F  V  V  L  V  S  R  L  L  L  V  E  L  F  L  R  Y  D  S  F  E  I  E  V  G  A  S  P  L  G  A  A  I  T  L  T  S  L  R  R  A  S  F  *  *  T  L  A  *  L  R  N  *  *  S  C  L  V  Y  Y  I  S  L  L  C  Y  *  E  I  I  N  L  Q  N  R  A  C  R  P  A  G  G  G  N  *  G  R  G  R  *  C  V  *  F  S  I  V  N  I  F  C  W  K  :  K  K  K  Q  *   </first_frame>
            <second_frame>  *  T  Q  P  S  L  V  E  Q  K  S  R  V  Q  F  L  I  F  F  *  *  K  W  H  Q  L  L  F  L  F  L  L  L  S  Y  N  S  P  R  I  H  H  H  L  L  V  K  I  H  R  L  I  V  L  V  F  V  P  F  R  L  R  C  L  R  Y  H  L  T  F  H  H  H  H  N  H  H  H  H  R  H  H  H  L  L  N  K  R  N  S  Q  P  K  K  S  L  E  I  M  D  Y  H  *  L  V  H  G  K  T  D  L  I  T  S  T  I  R  A  K  M  N  S  S  N  Q  E  F  R  S  I  S  L  L  F  F  E  R  T  C  H  Q  V  H  S  F  H  S  I  Q  T  L  L  F  C  *  M  V  K  V  S  P  Y  F  L  M  Y  L  K  L  K  K  R  I  F  S  P  V  L  S  C  H  P  L  I  S  Q  A  V  I  E  F  Y  P  I  L  I  L  L  N  Q  T  M  P  N  *  R  N  S  C  F  I  S  F  H  H  D  A  M  K  L  F  Q  S  F  T  I  A  T  P  S  Y  L  K  L  W  K  T  N  S  P  R  K  V  K  L  G  S  M  Q  Q  M  I  K  L  H  L  T  S  W  L  G  L  Y  M  A  L  I  L  K  T  P  N  L  E  P  M  D  L  S  *  S  E  N  G  C  C  S  S  F  I  L  C  *  F  S  A  S  Q  R  F  L  K  T  L  L  C  I  L  S  D  F  P  L  P  W  *  K  K  I  T  R  D  C  T  I  S  S  T  K  T  Q  L  Q  F  L  M  K  Q  K  K  L  V  F  L  G  K  K  L  V  I  I  C  Y  S  R  H  V  S  I  H  S  E  E  S  K  S  F  S  R  I  C  *  N  G  *  A  E  Q  G  L  N  S  T  V  N  *  H  K  K  F  V  Q  S  F  H  Q  T  V  G  R  S  Q  W  L  P  W  K  K  C  H  *  *  N  Q  *  S  T  N  P  S  E  L  N  L  R  *  H  H  N  T  A  E  Q  N  T  T  W  *  L  N  P  T  T  H  H  S  K  S  K  K  V  N  S  F  M  G  I  N  H  L  Q  L  K  T  Q  K  S  S  I  D  R  K  N  S  S  P  I  G  S  S  E  K  K  G  R  S  C  *  N  T  C  Y  G  Q  M  G  R  K  L  K  T  H  R  *  I  T  N  S  V  P  E  K  T  S  S  Y  W  F  Q  D  C  C  W  S  N  C  S  S  D  M  I  R  L  R  L  K  S  V  H  L  H  *  E  L  Q  L  P  *  L  L  *  E  E  P  V  F  D  E  H  W  L  N  *  E  I  S  N  L  V  *  C  I  I  F  H  C  C  V  I  K  K  *  L  I  Y  R  T  E  H  A  G  Q  P  A  A  V  I  E  E  E  A  G  D  V  Y  S  L  V  *  *  I  F  F  V  G  K :   R  R  N  N  N  </second_frame>
            <third_frame>   E  L  N  L  R  L  L  N  K  S  Q  E  F  N  S  *  F  F  S  N  R  N  G  I  N  F  S  F  S  S  F  S  *  A  T  I  P  L  A  Y  I  I  I  F  S  *  K  F  I  V  L  S  C  *  Y  S  S  H  S  G  F  G  V  *  D  T  T  L  H  F  I  T  I  T  I  T  I  I  I  V  I  T  T  C  *  T  S  E  T  P  S  P  K  S  P  W  R  L  W  T  T  I  S  W  S  M  E  R  Q  T  *  L  L  L  Q  S  G  Q  K  *  I  L  Q  I  K  N  S  E  A  S  V  Y  C  F  S  N  E  H  A  T  R  S  I  H  F  I  Q  S  K  R  C  C  F  A  R  W  *  K  F  P  R  T  F  *  C  I  *  S  *  K  K  G  S  F  H  R  Y  F  H  A  I  H  *  S  H  R  R  L  S  S  S  I  L  S  *  S  F  *  T  K  P  C  Q  I  E  E  T  H  V  L  S  P  F  I  T  T  Q  *  S  Y  S  R  V  S  Q  *  L  L  R  A  I  *  N  S  G  K  R  T  L  H  E  R  *  S  W  A  Q  C  S  K  *  S  S  C  I  *  L  P  G  *  V  F  I  W  H  *  S  S  R  H  R  T  W  N  R  W  T  *  V  D  R  K  M  G  A  V  P  A  S  S  F  A  N  S  R  P  P  K  G  S  *  R  P  C  Y  A  Y  F  Q  T  S  P  C  L  G  E  K  R  L  P  E  I  V  Q  F  L  L  R  K  L  N  F  S  S  *  *  S  R  K  N  W  Y  F  S  G  R  S  L  S  *  F  A  I  R  D  M  F  Q  F  I  R  R  N  Q  N  L  F  P  E  Y  V  E  M  D  R  Q  S  R  G  *  T  P  Q  S  I  S  T  R  N  S  F  S  H  F  I  K  Q  W  E  G  H  N  G  C  H  G  K  N  A  T  N  E  I  S  S  L  R  I  P  Q  N  *  T  S  G  S  I  T  I  R  Q  S  K  T  R  H  G  N  *  I  P  R  R  I  I  R  N  Q  R  R  *  T  P  L  W  V  S  T  I  C  N  *  R  P  K  N  L  R  S  I  G  R  I  R  R  R  S  V  H  R  R  R  R  G  E  A  V  E  T  R  V  M  V  K  W  V  G  N  *  K  R  I  D  K  *  Q  T  V  C  R  K  R  L  R  R  T  G  F  K  I  V  A  G  R  T  V  P  P  I  *  F  V  *  D  *  S  R  C  I  S  I  R  S  C  N  Y  L  N  F  S  E  K  S  Q  F  L  M  N  T  G  L  I  K  K  L  V  I  L  F  S  V  L  Y  F  I  V  V  L  L  R  N  N  *  F  T  E  Q  S  M  P  A  S  R  R  R  *  L  R  K  R  P  V  M  C  I  V  *  Y  S  K  Y  F  L  L  E   : K  E  E  T  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64438" stop="66084"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKVKSSILDFFLIEMASTSLSLPSLKLQFPSHTSSSSRKNSSSYRVSIRPIQASVSEIPPYISSPSQSPSSSSSPPVKQAKLPAQKVPGDYGLPLVGPWKDRLDYFYNQGKNEFFKSRIQKHQSTVFRTNMPPGPFISFNPNVVVLLDGKSFPVLFDVSKVEKKDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAKLKKLMFYLLSSRRNEVIPEFHNSYSELFETLENELSTKGKAGLNAANDQAAFNFLARSLYGINPQDTELGTDGPKLIGKWVLFQLHPLLILGLPKVLEDLVMHTFRLPPALVKKDYQRLYNFFYENSTSVLDEAEKIGISREEACHNLLFATCFNSFGGIKIFFPNMLKWIGRAGAKLHSQLAQEIRSVISSNSGKVTMAAMEKMPLMKSVVYESLRIEPPVASQYGRAKHDMVIESHDASFEIKEGELLYGYQPFATKDPKIFDRSEEFVADRFIGEEGEKLLKHVLWSNGSETENASINNKQCAGKDFVVLVSRLLLVELFLRYDSFEIEVGASPLGAAITLTSLRRASF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65645" e_stop="66345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="65645" e_stop="66345" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65645" stop="66345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGAAATCAGTAGTCTACGAATCCCTCAGAATTGAACCTCCGGTAGCATCACAATACGGCAGAGCAAAACACGACATGGTAATTGAATCCCACGACGCATCATTCGAAATCAAAGAAGGTGAACTCCTTTATGGGTATCAACCATTTGCAACTAAAGACCCAAAAATCTTCGATCGATCGGAAGAATTCGTCGCCGATCGGTTCATCGGAGAAGAAGGGGAGAAGCTGTTGAAACACGTGTTATGGTCAAATGGGTCGGAAACTGAAAACGCATCGATAAATAACAAACAGTGTGCCGGAAAAGACTTCGTCGTACTGGTTTCAAGATTGTTGCTGGTCGAACTGTTCCTCCGATATGATTCGTTTGAGATTGAAGTCGGTGCATCTCCATTAGGAGCTGCAATTACCTTAACTTCTCTGAGAAGAGCCAGTTTTTGATGAACACTGGCTTAATTAAGAAATTAGTAATCTTGTTTAGTGTATTATATTTCATTGTTGTGTTATTAAGAAATAATTAATTTACAGAACAGAGCATGCCGGCCAGCCGGCGGCGGTAATTGAGGAAGAGGCCGGTGATGTGTATAGTTTAGTATAGTAAATATTTTTTGTTGGAAAATGGAATGTGTAACTATGTTAATGATCAATGTAATATGTTGTTCTCAATAAATACAATAGATAATTCACCCCTCCAAATTATAT</gDNA_template>
            <first_frame> *  *  N  Q  *  S  T  N  P  S  E  L  N  L  R  *  H  H  N  T  A  E  Q  N  T  T  W  *  L  N  P  T  T  H  H  S  K  S  K  K  V  N  S  F  M  G  I  N  H  L  Q  L  K  T  Q  K  S  S  I  D  R  K  N  S  S  P  I  G  S  S  E  K  K  G  R  S  C  *  N  T  C  Y  G  Q  M  G  R  K  L  K  T  H  R  *  I  T  N  S  V  P  E  K  T  S  S  Y  W  F  Q  D  C  C  W  S  N  C  S  S  D  M  I  R  L  R  L  K  S  V  H  L  H  *  E  L  Q  L  P  *  L  L  *  E  E  P  V  F  D  E  H  W  L  N  *  E  I  S  N  L  V  *  C  I  I  F  H  C  C  V  I  K  K  *  L  I  Y  R  T  E  H  A  G  Q  P  A  A  V  I  E  E  E  A  G  D  V  Y  S  L  V  *  *  I  F  F  V  G  K  W  N  V  *  L  C  *  *  S  M  *  Y  V  V  L  N  K  Y  N  R  *  F  T  P  P  N  Y   </first_frame>
            <second_frame>  N  E  I  S  S  L  R  I  P  Q  N  *  T  S  G  S  I  T  I  R  Q  S  K  T  R  H  G  N  *  I  P  R  R  I  I  R  N  Q  R  R  *  T  P  L  W  V  S  T  I  C  N  *  R  P  K  N  L  R  S  I  G  R  I  R  R  R  S  V  H  R  R  R  R  G  E  A  V  E  T  R  V  M  V  K  W  V  G  N  *  K  R  I  D  K  *  Q  T  V  C  R  K  R  L  R  R  T  G  F  K  I  V  A  G  R  T  V  P  P  I  *  F  V  *  D  *  S  R  C  I  S  I  R  S  C  N  Y  L  N  F  S  E  K  S  Q  F  L  M  N  T  G  L  I  K  K  L  V  I  L  F  S  V  L  Y  F  I  V  V  L  L  R  N  N  *  F  T  E  Q  S  M  P  A  S  R  R  R  *  L  R  K  R  P  V  M  C  I  V  *  Y  S  K  Y  F  L  L  E  N  G  M  C  N  Y  V  N  D  Q  C  N  M  L  F  S  I  N  T  I  D  N  S  P  L  Q  I  I  </second_frame>
            <third_frame>   M  K  S  V  V  Y  E  S  L  R  I  E  P  P  V  A  S  Q  Y  G  R  A  K  H  D  M  V  I  E  S  H  D  A  S  F  E  I  K  E  G  E  L  L  Y  G  Y  Q  P  F  A  T  K  D  P  K  I  F  D  R  S  E  E  F  V  A  D  R  F  I  G  E  E  G  E  K  L  L  K  H  V  L  W  S  N  G  S  E  T  E  N  A  S  I  N  N  K  Q  C  A  G  K  D  F  V  V  L  V  S  R  L  L  L  V  E  L  F  L  R  Y  D  S  F  E  I  E  V  G  A  S  P  L  G  A  A  I  T  L  T  S  L  R  R  A  S  F  *  *  T  L  A  *  L  R  N  *  *  S  C  L  V  Y  Y  I  S  L  L  C  Y  *  E  I  I  N  L  Q  N  R  A  C  R  P  A  G  G  G  N  *  G  R  G  R  *  C  V  *  F  S  I  V  N  I  F  C  W  K  M  E  C  V  T  M  L  M  I  N  V  I  C  C  S  Q  *  I  Q  *  I  I  H  P  S  K  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65647" stop="66084"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKSVVYESLRIEPPVASQYGRAKHDMVIESHDASFEIKEGELLYGYQPFATKDPKIFDRSEEFVADRFIGEEGEKLLKHVLWSNGSETENASINNKQCAGKDFVVLVSRLLLVELFLRYDSFEIEVGASPLGAAITLTSLRRASF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68991" PGL_stop="70696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68991" e_stop="69845"/>
            <exon e_start="70008" e_stop="70696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="0.998"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="68991" e_stop="69845" e_length="855"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69846" i_stop="70007" i_length="162"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="70008" e_stop="70696" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68991" stop="69557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68991" stop="69468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68991" stop="69430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69032" stop="69845"/>
              <exon start="70008" stop="70648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69045" stop="69781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69045" stop="69777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="69598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69055" stop="69588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69060" stop="69554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69066" stop="69589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69240" stop="69845"/>
              <exon start="70008" stop="70205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69241" stop="69845"/>
              <exon start="70008" stop="70275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69736" stop="69845"/>
              <exon start="70008" stop="70696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70079" stop="70648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70127" stop="70695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70172" stop="70680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAATTTTATATATAAGAAAATAACAGCAATGATTGTACCGGCCGGAAAAATGGAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGATGAGGAGGCGTTGACCCGACCCTTGATTTTGCAAGTGAACCGTTTTAAGTGTGGTGGGTGGGTTTTCGGAACGGCGGTTCATCACGCCATGTGTGATGGAATGGGTTCGACGCTGTTTTTTCATGCTATGGCGGAGATTGCTCGTGGGGAGAAGGGGATGAAGATTGAACCGGTGTGGGACCGGTCGAATTTGCTTGGACCGAGGAATCCACCACGAGTTGAATTTCCGGTTCATGAGTTCCTCAGTTTGGATAGGGATTCGTGTCCATACTTGGAATCAGGTAACTCGGCAGTTCGAGAGTGCTTTGAGGTGAAAGATGAGTGGTTGGATAGACTAAAGGGGTTTCTTCATGAGCAATCTGCAGGTTCAAAGTATACAACTTTTGAAGCTTTGGGAGCTTTCATATGGCGAGCAAA : GGTAAAGGCTTGTAAAATGTCAGATGATGAGACAGTGAAGTATGCTTATCTAACCAATATCAGAAGAAGAGTGAAGCCACCATTGCCAGCAGGTTACTGGGGCAATGGCTGTGTGCCAATATACGTTCAGCTCCTCGCAAAAGACATCATCAATGAACCTATCTGGAAAGCAGCAGACGCGATAAAGAAGAGCAAGGACATCATCACAGATGAGTATGTTCGTTCGTTCATTGATTTTCAGGAGCTGCATTATGATGAAGGGATCACATCAGGGAATAGAGTGAGTGCATTTACAGATTGGCGGCATGTAGGCCACGAGACGGTTGATTTTGGATGGGGTGGCCCTGTGACTGTCTTTCCTCTGTCTAGACACTTAGTTGGGAGTGTTGAACCTTGCTTTTTCTTGCCTTGTTCTTCTAAAACTCAAGGTAAGAAAGATGGTTTCAAAGTTTTGGTCTGTCTGCAACAAGAAGCCATGCCCGTTTTCATGGAAGAGATGGAAAAGTTGGAGCATGGACTTGCTTGATTGATTTTACTATATATATGTGTGTGTGTTATACTAAACTAATAAAAACAACATTTACAAGTAGAGACCAAATTTGGCATATGTATTACTACATTTTCGACTGCTAAATGTTCTTGTAAGTAAATTACAATGAAGAAATGTAATCCTTTACATAATTTAACTA</gDNA_template>
            <first_frame> F  *  F  Y  I  *  E  N  N  S  N  D  C  T  G  R  K  N  G  S  N  Y  R  R  N  *  H  N  L  S  I  *  A  A  F  H  R  K  P  C  P  S  S  L  P  Y  *  H  R  S  E  P  Q  F  H  F  P  I  P  P  C  L  R  Q  *  R  H  H  I  R  P  I  *  S  C  H  L  L  P  L  R  R  S  R  P  L  L  P  I  R  R  L  S  P  P  S  S  I  G  Q  P  S  R  A  S  L  S  S  G  G  W  R  S  R  N  S  V  D  G  G  L  Y  L  G  F  N  E  L  P  G  *  S  G  L  *  L  G  *  E  A  G  T  R  P  E  R  *  G  G  V  D  P  T  L  D  F  A  S  E  P  F  *  V  W  W  V  G  F  R  N  G  G  S  S  R  H  V  *  W  N  G  F  D  A  V  F  S  C  Y  G  G  D  C  S  W  G  E  G  D  E  D  *  T  G  V  G  P  V  E  F  A  W  T  E  E  S  T  T  S  *  I  S  G  S  *  V  P  Q  F  G  *  G  F  V  S  I  L  G  I  R  *  L  G  S  S  R  V  L  *  G  E  R  *  V  V  G  *  T  K  G  V  S  S  *  A  I  C  R  F  K  V  Y  N  F  *  S  F  G  S  F  H  M  A  S  K  :  G  K  G  L  *  N  V  R  *  *  D  S  E  V  C  L  S  N  Q  Y  Q  K  K  S  E  A  T  I  A  S  R  L  L  G  Q  W  L  C  A  N  I  R  S  A  P  R  K  R  H  H  Q  *  T  Y  L  E  S  S  R  R  D  K  E  E  Q  G  H  H  H  R  *  V  C  S  F  V  H  *  F  S  G  A  A  L  *  *  R  D  H  I  R  E  *  S  E  C  I  Y  R  L  A  A  C  R  P  R  D  G  *  F  W  M  G  W  P  C  D  C  L  S  S  V  *  T  L  S  W  E  C  *  T  L  L  F  L  A  L  F  F  *  N  S  R  *  E  R  W  F  Q  S  F  G  L  S  A  T  R  S  H  A  R  F  H  G  R  D  G  K  V  G  A  W  T  C  L  I  D  F  T  I  Y  M  C  V  C  Y  T  K  L  I  K  T  T  F  T  S  R  D  Q  I  W  H  M  Y  Y  Y  I  F  D  C  *  M  F  L  *  V  N  Y  N  E  E  M  *  S  F  T  *  F  N   </first_frame>
            <second_frame>  F  N  F  I  Y  K  K  I  T  A  M  I  V  P  A  G  K  M  E  V  T  T  G  E  T  N  T  I  Y  P  S  K  P  P  F  T  E  N  H  V  L  P  L  S  H  I  D  T  D  R  N  L  N  F  T  F  R  Y  L  R  V  Y  V  N  D  D  T  T  S  D  P  Y  E  V  V  T  S  S  L  S  A  A  L  V  H  Y  Y  Q  F  A  G  S  L  R  R  R  P  S  D  N  R  L  E  L  H  C  Q  V  G  D  G  V  P  V  I  P  S  T  V  D  C  T  L  A  S  M  N  Y  L  D  D  P  D  Y  N  L  A  E  K  L  V  P  D  P  R  D  E  E  A  L  T  R  P  L  I  L  Q  V  N  R  F  K  C  G  G  W  V  F  G  T  A  V  H  H  A  M  C  D  G  M  G  S  T  L  F  F  H  A  M  A  E  I  A  R  G  E  K  G  M  K  I  E  P  V  W  D  R  S  N  L  L  G  P  R  N  P  P  R  V  E  F  P  V  H  E  F  L  S  L  D  R  D  S  C  P  Y  L  E  S  G  N  S  A  V  R  E  C  F  E  V  K  D  E  W  L  D  R  L  K  G  F  L  H  E  Q  S  A  G  S  K  Y  T  T  F  E  A  L  G  A  F  I  W  R  A  K :   V  K  A  C  K  M  S  D  D  E  T  V  K  Y  A  Y  L  T  N  I  R  R  R  V  K  P  P  L  P  A  G  Y  W  G  N  G  C  V  P  I  Y  V  Q  L  L  A  K  D  I  I  N  E  P  I  W  K  A  A  D  A  I  K  K  S  K  D  I  I  T  D  E  Y  V  R  S  F  I  D  F  Q  E  L  H  Y  D  E  G  I  T  S  G  N  R  V  S  A  F  T  D  W  R  H  V  G  H  E  T  V  D  F  G  W  G  G  P  V  T  V  F  P  L  S  R  H  L  V  G  S  V  E  P  C  F  F  L  P  C  S  S  K  T  Q  G  K  K  D  G  F  K  V  L  V  C  L  Q  Q  E  A  M  P  V  F  M  E  E  M  E  K  L  E  H  G  L  A  *  L  I  L  L  Y  I  C  V  C  V  I  L  N  *  *  K  Q  H  L  Q  V  E  T  K  F  G  I  C  I  T  T  F  S  T  A  K  C  S  C  K  *  I  T  M  K  K  C  N  P  L  H  N  L  T  </second_frame>
            <third_frame>   L  I  L  Y  I  R  K  *  Q  Q  *  L  Y  R  P  E  K  W  K  *  L  P  A  K  L  T  Q  S  I  H  L  S  R  L  S  Q  K  T  M  S  F  L  S  P  I  L  T  P  I  G  T  S  I  S  L  S  D  T  S  V  S  T  S  M  T  T  P  H  Q  T  H  M  K  L  S  P  P  P  S  P  P  L  S  S  T  T  T  N  S  P  A  L  S  A  V  V  H  R  T  T  V  *  S  F  T  V  K  W  G  M  A  F  P  *  F  R  R  R  W  I  V  P  W  L  Q  *  T  T  W  M  I  R  I  I  T  W  L  R  S  W  Y  P  T  R  E  M  R  R  R  *  P  D  P  *  F  C  K  *  T  V  L  S  V  V  G  G  F  S  E  R  R  F  I  T  P  C  V  M  E  W  V  R  R  C  F  F  M  L  W  R  R  L  L  V  G  R  R  G  *  R  L  N  R  C  G  T  G  R  I  C  L  D  R  G  I  H  H  E  L  N  F  R  F  M  S  S  S  V  W  I  G  I  R  V  H  T  W  N  Q  V  T  R  Q  F  E  S  A  L  R  *  K  M  S  G  W  I  D  *  R  G  F  F  M  S  N  L  Q  V  Q  S  I  Q  L  L  K  L  W  E  L  S  Y  G  E  Q   : R  *  R  L  V  K  C  Q  M  M  R  Q  *  S  M  L  I  *  P  I  S  E  E  E  *  S  H  H  C  Q  Q  V  T  G  A  M  A  V  C  Q  Y  T  F  S  S  S  Q  K  T  S  S  M  N  L  S  G  K  Q  Q  T  R  *  R  R  A  R  T  S  S  Q  M  S  M  F  V  R  S  L  I  F  R  S  C  I  M  M  K  G  S  H  Q  G  I  E  *  V  H  L  Q  I  G  G  M  *  A  T  R  R  L  I  L  D  G  V  A  L  *  L  S  F  L  C  L  D  T  *  L  G  V  L  N  L  A  F  S  C  L  V  L  L  K  L  K  V  R  K  M  V  S  K  F  W  S  V  C  N  K  K  P  C  P  F  S  W  K  R  W  K  S  W  S  M  D  L  L  D  *  F  Y  Y  I  Y  V  C  V  L  Y  *  T  N  K  N  N  I  Y  K  *  R  P  N  L  A  Y  V  L  L  H  F  R  L  L  N  V  L  V  S  K  L  Q  *  R  N  V  I  L  Y  I  I  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68992" stop="69845"/>
                    <exon start="70008" stop="70533"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFIYKKITAMIVPAGKMEVTTGETNTIYPSKPPFTENHVLPLSHIDTDRNLNFTFRYLRVYVNDDTTSDPYEVVTSSLSAALVHYYQFAGSLRRRPSDNRLELHCQVGDGVPVIPSTVDCTLASMNYLDDPDYNLAEKLVPDPRDEEALTRPLILQVNRFKCGGWVFGTAVHHAMCDGMGSTLFFHAMAEIARGEKGMKIEPVWDRSNLLGPRNPPRVEFPVHEFLSLDRDSCPYLESGNSAVRECFEVKDEWLDRLKGFLHEQSAGSKYTTFEALGAFIWRAKVKACKMSDDETVKYAYLTNIRRRVKPPLPAGYWGNGCVPIYVQLLAKDIINEPIWKAADAIKKSKDIITDEYVRSFIDFQELHYDEGITSGNRVSAFTDWRHVGHETVDFGWGGPVTVFPLSRHLVGSVEPCFFLPCSSKTQGKKDGFKVLVCLQQEAMPVFMEEMEKLEHGLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71927" PGL_stop="71055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71927" e_stop="71055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="71927" e_stop="71055" e_length="873"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71927" stop="71055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71927" stop="71112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71880" stop="71114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTCGTTAATGGTTAGTGTAGGCCTAATATGCTGCTTTATTCGACGAAGATTGAATTTCCAAAACAGAACAAGAAGAAGCCGCGAGTTATGTGAGACTACAGGGATCAGCATCCCCGTTTATCAGTACAAAGAAATGGAAAAAGCAACTGATTTCTTCTCTGAGAAACGGAGACTAGGAAATGGCGCGTATGGAACAGTTTATTCTGGAAAACTTCAAACTGACAATTGGGTAGCTATCAAAAGAATTAGACACAGAGATACTGATAGCATTGAACAATTCATCAATGAAATCAAGCTCCTTTCCTCTGTCAATCATCCAAACCTCGTTCGTCTCTTAGGCTGCTCAATCGAAAATGGTGAACAGATACTTGTTTATGAATACATGCCTAATGGGACTTTGTCACAACATATACAAAGAGAAAAAGGGAACGGGCTTCCATGGCCTGTTCGTCTTACAATTGGTGCAGAAACTGCACAAGCTATAGCTTATTTGCATAATGCAATGCATCCTCCTATATATCACAGAGATGTTAAGTCAAGTAATATACTCTTGGATTACAATTACAAGTCAAAAGTAGCAGATTTTGGACTGTCAAGACTCGGTTTGGTTGAATCGTCTCACATTTCTACTGCACCACAAGGAACTCCGGGATATCTAGATCCTCAGTATCATCAGAACTTTCAGTTGTCTGATAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGCTGAGATCATAACAGGACTAAAAGCAGTAGACTTTGCTCGTCCTCAAGACGAAATAAACTTGGCTGCACTTGCTATTGACAGAATAGGAAAGGGAAACTTAGATGAAATTATCGATCCATTTATCGAGTTACATATGGATGC</gDNA_template>
            <first_frame> C  F  V  N  G  *  C  R  P  N  M  L  L  Y  S  T  K  I  E  F  P  K  Q  N  K  K  K  P  R  V  M  *  D  Y  R  D  Q  H  P  R  L  S  V  Q  R  N  G  K  S  N  *  F  L  L  *  E  T  E  T  R  K  W  R  V  W  N  S  L  F  W  K  T  S  N  *  Q  L  G  S  Y  Q  K  N  *  T  Q  R  Y  *  *  H  *  T  I  H  Q  *  N  Q  A  P  F  L  C  Q  S  S  K  P  R  S  S  L  R  L  L  N  R  K  W  *  T  D  T  C  L  *  I  H  A  *  W  D  F  V  T  T  Y  T  K  R  K  R  E  R  A  S  M  A  C  S  S  Y  N  W  C  R  N  C  T  S  Y  S  L  F  A  *  C  N  A  S  S  Y  I  S  Q  R  C  *  V  K  *  Y  T  L  G  L  Q  L  Q  V  K  S  S  R  F  W  T  V  K  T  R  F  G  *  I  V  S  H  F  Y  C  T  T  R  N  S  G  I  S  R  S  S  V  S  S  E  L  S  V  V  *  *  E  R  C  L  *  F  W  C  C  S  C  *  D  H  N  R  T  K  S  S  R  L  C  S  S  S  R  R  N  K  L  G  C  T  C  Y  *  Q  N  R  K  G  K  L  R  *  N  Y  R  S  I  Y  R  V  T  Y  G  C </first_frame>
            <second_frame>  A  S  L  M  V  S  V  G  L  I  C  C  F  I  R  R  R  L  N  F  Q  N  R  T  R  R  S  R  E  L  C  E  T  T  G  I  S  I  P  V  Y  Q  Y  K  E  M  E  K  A  T  D  F  F  S  E  K  R  R  L  G  N  G  A  Y  G  T  V  Y  S  G  K  L  Q  T  D  N  W  V  A  I  K  R  I  R  H  R  D  T  D  S  I  E  Q  F  I  N  E  I  K  L  L  S  S  V  N  H  P  N  L  V  R  L  L  G  C  S  I  E  N  G  E  Q  I  L  V  Y  E  Y  M  P  N  G  T  L  S  Q  H  I  Q  R  E  K  G  N  G  L  P  W  P  V  R  L  T  I  G  A  E  T  A  Q  A  I  A  Y  L  H  N  A  M  H  P  P  I  Y  H  R  D  V  K  S  S  N  I  L  L  D  Y  N  Y  K  S  K  V  A  D  F  G  L  S  R  L  G  L  V  E  S  S  H  I  S  T  A  P  Q  G  T  P  G  Y  L  D  P  Q  Y  H  Q  N  F  Q  L  S  D  K  S  D  V  Y  S  F  G  V  V  L  A  E  I  I  T  G  L  K  A  V  D  F  A  R  P  Q  D  E  I  N  L  A  A  L  A  I  D  R  I  G  K  G  N  L  D  E  I  I  D  P  F  I  E  L  H  M  D   </second_frame>
            <third_frame>   L  R  *  W  L  V  *  A  *  Y  A  A  L  F  D  E  D  *  I  S  K  T  E  Q  E  E  A  A  S  Y  V  R  L  Q  G  S  A  S  P  F  I  S  T  K  K  W  K  K  Q  L  I  S  S  L  R  N  G  D  *  E  M  A  R  M  E  Q  F  I  L  E  N  F  K  L  T  I  G  *  L  S  K  E  L  D  T  E  I  L  I  A  L  N  N  S  S  M  K  S  S  S  F  P  L  S  I  I  Q  T  S  F  V  S  *  A  A  Q  S  K  M  V  N  R  Y  L  F  M  N  T  C  L  M  G  L  C  H  N  I  Y  K  E  K  K  G  T  G  F  H  G  L  F  V  L  Q  L  V  Q  K  L  H  K  L  *  L  I  C  I  M  Q  C  I  L  L  Y  I  T  E  M  L  S  Q  V  I  Y  S  W  I  T  I  T  S  Q  K  *  Q  I  L  D  C  Q  D  S  V  W  L  N  R  L  T  F  L  L  H  H  K  E  L  R  D  I  *  I  L  S  I  I  R  T  F  S  C  L  I  R  A  M  F  I  V  L  V  L  F  L  L  R  S  *  Q  D  *  K  Q  *  T  L  L  V  L  K  T  K  *  T  W  L  H  L  L  L  T  E  *  E  R  E  T  *  M  K  L  S  I  H  L  S  S  Y  I  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71926" stop="71057"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASLMVSVGLICCFIRRRLNFQNRTRRSRELCETTGISIPVYQYKEMEKATDFFSEKRRLGNGAYGTVYSGKLQTDNWVAIKRIRHRDTDSIEQFINEIKLLSSVNHPNLVRLLGCSIENGEQILVYEYMPNGTLSQHIQREKGNGLPWPVRLTIGAETAQAIAYLHNAMHPPIYHRDVKSSNILLDYNYKSKVADFGLSRLGLVESSHISTAPQGTPGYLDPQYHQNFQLSDKSDVYSFGVVLAEIITGLKAVDFARPQDEINLAALAIDRIGKGNLDEIIDPFIELHMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="74630" PGL_stop="74046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74630" e_stop="74046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74630" e_stop="74046" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74630" stop="74046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACATGTCCTCAAAAACATGAATTTTCCTCTCCATTTTACAACAATTCTCTGTTTGTTTATTCTCAAGTTTTCATCAAACACAGTTCTTGGATCAAACTGTACCCATTCATGTGGAAACAGATTCCTTCCATTTCCTTTTGGTTTCTCCCATGGCTGCCCAATTCAGCTTAACTGTACCTCAAATGAAGAAATTTTCATGAAAGATTTCCCAGTTCAATCAGTAACTTCAGATACCATTTTAATCAATCTTTTAGCAAAATGCAGCCGACCATTTTCAGCAATTCACAATCTTTTTAGCCCAAATTACGCACCCACTTCAAAAAACGGTATACTTTTCCAGAATTGCAGTTCTTCACAGTCTAGCTGTTTGATTCCATCTACGATGATACAAACCCATTTTGACATTCTTGATTGTGGTAAAGAAAACATGAGCTGTTATTCTGAGCCGAATAGTGAGAACAATTTCATCAATTTGAAGAATTTGTCGAAAACAGGGTGTGGCTCTCTGTTTTCTGCAATTTCTGTGGAGTCGACGGTGAATAGCTCGGCTGTTTCGTTGGATGTTCAGATGGTTCAATTGGG</gDNA_template>
            <first_frame> F  T  C  P  Q  K  H  E  F  S  S  P  F  Y  N  N  S  L  F  V  Y  S  Q  V  F  I  K  H  S  S  W  I  K  L  Y  P  F  M  W  K  Q  I  P  S  I  S  F  W  F  L  P  W  L  P  N  S  A  *  L  Y  L  K  *  R  N  F  H  E  R  F  P  S  S  I  S  N  F  R  Y  H  F  N  Q  S  F  S  K  M  Q  P  T  I  F  S  N  S  Q  S  F  *  P  K  L  R  T  H  F  K  K  R  Y  T  F  P  E  L  Q  F  F  T  V  *  L  F  D  S  I  Y  D  D  T  N  P  F  *  H  S  *  L  W  *  R  K  H  E  L  L  F  *  A  E  *  *  E  Q  F  H  Q  F  E  E  F  V  E  N  R  V  W  L  S  V  F  C  N  F  C  G  V  D  G  E  *  L  G  C  F  V  G  C  S  D  G  S  I  G </first_frame>
            <second_frame>  S  H  V  L  K  N  M  N  F  P  L  H  F  T  T  I  L  C  L  F  I  L  K  F  S  S  N  T  V  L  G  S  N  C  T  H  S  C  G  N  R  F  L  P  F  P  F  G  F  S  H  G  C  P  I  Q  L  N  C  T  S  N  E  E  I  F  M  K  D  F  P  V  Q  S  V  T  S  D  T  I  L  I  N  L  L  A  K  C  S  R  P  F  S  A  I  H  N  L  F  S  P  N  Y  A  P  T  S  K  N  G  I  L  F  Q  N  C  S  S  S  Q  S  S  C  L  I  P  S  T  M  I  Q  T  H  F  D  I  L  D  C  G  K  E  N  M  S  C  Y  S  E  P  N  S  E  N  N  F  I  N  L  K  N  L  S  K  T  G  C  G  S  L  F  S  A  I  S  V  E  S  T  V  N  S  S  A  V  S  L  D  V  Q  M  V  Q  L   </second_frame>
            <third_frame>   H  M  S  S  K  T  *  I  F  L  S  I  L  Q  Q  F  S  V  C  L  F  S  S  F  H  Q  T  Q  F  L  D  Q  T  V  P  I  H  V  E  T  D  S  F  H  F  L  L  V  S  P  M  A  A  Q  F  S  L  T  V  P  Q  M  K  K  F  S  *  K  I  S  Q  F  N  Q  *  L  Q  I  P  F  *  S  I  F  *  Q  N  A  A  D  H  F  Q  Q  F  T  I  F  L  A  Q  I  T  H  P  L  Q  K  T  V  Y  F  S  R  I  A  V  L  H  S  L  A  V  *  F  H  L  R  *  Y  K  P  I  L  T  F  L  I  V  V  K  K  T  *  A  V  I  L  S  R  I  V  R  T  I  S  S  I  *  R  I  C  R  K  Q  G  V  A  L  C  F  L  Q  F  L  W  S  R  R  *  I  A  R  L  F  R  W  M  F  R  W  F  N  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74629" stop="74048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHVLKNMNFPLHFTTILCLFILKFSSNTVLGSNCTHSCGNRFLPFPFGFSHGCPIQLNCTSNEEIFMKDFPVQSVTSDTILINLLAKCSRPFSAIHNLFSPNYAPTSKNGILFQNCSSSQSSCLIPSTMIQTHFDILDCGKENMSCYSEPNSENNFINLKNLSKTGCGSLFSAISVESTVNSSAVSLDVQMVQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="95574" PGL_stop="96711"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95574" e_stop="96321"/>
            <exon e_start="96571" e_stop="96711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.962"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="95574" e_stop="96321" e_length="748"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96322" i_stop="96570" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="96571" e_stop="96711" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95574" stop="96321"/>
              <exon start="96571" stop="96595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95590" stop="96321"/>
              <exon start="96571" stop="96711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95590" stop="96321"/>
              <exon start="96571" stop="96663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCCTCCTTCACTTCAACAATTTTCTCCTCATCTCCATTTTTCTCCCTTTGCTTTTTCTCTCTCATTCTCCTTTTGTCCAAAAAAATTTGAATTTATAACCAAAAAAAAAAGGCAATAAAATTACTAGTTTAACCTCAAATGTTAGTTGAAACTTGTCCCTATAGTAACAACTAATTTAATTTTGTATACCAACATTTTTCTAAACATCATGGTACACTCCATGCCCAACATGTCGTCAATTGCTGTGATGGACGACGATGATTTTGACGTCCGTCACAGCAGTTTCTCGGCTTATGACCCGAATCGCCTTAGTGAAGACGGGTCACCTCCCATGTTGTCTCCATGGAACCAAACTTGTTCCCCTTTTACTAAATCCTCTTGGCATAACTTGGATGATAATTTTCCAAAAAATTTGCCACAAAATGGACTCATTGGTTCCCTTGTTCGTGAAGAAGGACATATTTATTCTTTAGCTGCAAAGAATGATATTCTTTATACTGGTTCCGATAGCAAAAACATACGTGTTTGGAAAGATATGAAGGAATTTTCAGCTTTTAAATCAAATAGCGGTCTTGTTAAAGCTATTATCATCGCTGGAGAGAAGATATTCACCGGTCATCAAGATGGAAAAGTTCGAGTTTGGAAGGTTCAATCCAAACACCCTAACAACCATAAACGTGCTGGGAGTTTGCCAAAACTCATGGACCTTTTCAAGGCTTCCATTAAACCTAGCAACTACGTAGAG : GTAAAACGTAATCGGACCACTCTTTGGATTAAGCATTGTGACGCAATTTCATGTTTAAGCATGGACCATAGTGAAGGCCTACTCTACTCAGCTTCATGGGATAGAACATTTAAAGTATGGAAAGTTGATAAATCCAAATGT</gDNA_template>
            <first_frame> H  S  S  F  T  S  T  I  F  S  S  S  P  F  F  S  L  C  F  F  S  L  I  L  L  L  S  K  K  I  *  I  Y  N  Q  K  K  K  A  I  K  L  L  V  *  P  Q  M  L  V  E  T  C  P  Y  S  N  N  *  F  N  F  V  Y  Q  H  F  S  K  H  H  G  T  L  H  A  Q  H  V  V  N  C  C  D  G  R  R  *  F  *  R  P  S  Q  Q  F  L  G  L  *  P  E  S  P  *  *  R  R  V  T  S  H  V  V  S  M  E  P  N  L  F  P  F  Y  *  I  L  L  A  *  L  G  *  *  F  S  K  K  F  A  T  K  W  T  H  W  F  P  C  S  *  R  R  T  Y  L  F  F  S  C  K  E  *  Y  S  L  Y  W  F  R  *  Q  K  H  T  C  L  E  R  Y  E  G  I  F  S  F  *  I  K  *  R  S  C  *  S  Y  Y  H  R  W  R  E  D  I  H  R  S  S  R  W  K  S  S  S  L  E  G  S  I  Q  T  P  *  Q  P  *  T  C  W  E  F  A  K  T  H  G  P  F  Q  G  F  H  *  T  *  Q  L  R  R   : G  K  T  *  S  D  H  S  L  D  *  A  L  *  R  N  F  M  F  K  H  G  P  *  *  R  P  T  L  L  S  F  M  G  *  N  I  *  S  M  E  S  *  *  I  Q  M  </first_frame>
            <second_frame>  I  P  P  S  L  Q  Q  F  S  P  H  L  H  F  S  P  F  A  F  S  L  S  F  S  F  C  P  K  K  F  E  F  I  T  K  K  K  R  Q  *  N  Y  *  F  N  L  K  C  *  L  K  L  V  P  I  V  T  T  N  L  I  L  Y  T  N  I  F  L  N  I  M  V  H  S  M  P  N  M  S  S  I  A  V  M  D  D  D  D  F  D  V  R  H  S  S  F  S  A  Y  D  P  N  R  L  S  E  D  G  S  P  P  M  L  S  P  W  N  Q  T  C  S  P  F  T  K  S  S  W  H  N  L  D  D  N  F  P  K  N  L  P  Q  N  G  L  I  G  S  L  V  R  E  E  G  H  I  Y  S  L  A  A  K  N  D  I  L  Y  T  G  S  D  S  K  N  I  R  V  W  K  D  M  K  E  F  S  A  F  K  S  N  S  G  L  V  K  A  I  I  I  A  G  E  K  I  F  T  G  H  Q  D  G  K  V  R  V  W  K  V  Q  S  K  H  P  N  N  H  K  R  A  G  S  L  P  K  L  M  D  L  F  K  A  S  I  K  P  S  N  Y  V  E  :  V  K  R  N  R  T  T  L  W  I  K  H  C  D  A  I  S  C  L  S  M  D  H  S  E  G  L  L  Y  S  A  S  W  D  R  T  F  K  V  W  K  V  D  K  S  K  C </second_frame>
            <third_frame>   F  L  L  H  F  N  N  F  L  L  I  S  I  F  L  P  L  L  F  L  S  H  S  P  F  V  Q  K  N  L  N  L  *  P  K  K  K  G  N  K  I  T  S  L  T  S  N  V  S  *  N  L  S  L  *  *  Q  L  I  *  F  C  I  P  T  F  F  *  T  S  W  Y  T  P  C  P  T  C  R  Q  L  L  *  W  T  T  M  I  L  T  S  V  T  A  V  S  R  L  M  T  R  I  A  L  V  K  T  G  H  L  P  C  C  L  H  G  T  K  L  V  P  L  L  L  N  P  L  G  I  T  W  M  I  I  F  Q  K  I  C  H  K  M  D  S  L  V  P  L  F  V  K  K  D  I  F  I  L  *  L  Q  R  M  I  F  F  I  L  V  P  I  A  K  T  Y  V  F  G  K  I  *  R  N  F  Q  L  L  N  Q  I  A  V  L  L  K  L  L  S  S  L  E  R  R  Y  S  P  V  I  K  M  E  K  F  E  F  G  R  F  N  P  N  T  L  T  T  I  N  V  L  G  V  C  Q  N  S  W  T  F  S  R  L  P  L  N  L  A  T  T  *  R :   *  N  V  I  G  P  L  F  G  L  S  I  V  T  Q  F  H  V  *  A  W  T  I  V  K  A  Y  S  T  Q  L  H  G  I  E  H  L  K  Y  G  K  L  I  N  P  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95722" stop="96321"/>
                    <exon start="96571" stop="96711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLVPIVTTNLILYTNIFLNIMVHSMPNMSSIAVMDDDDFDVRHSSFSAYDPNRLSEDGSPPMLSPWNQTCSPFTKSSWHNLDDNFPKNLPQNGLIGSLVREEGHIYSLAAKNDILYTGSDSKNIRVWKDMKEFSAFKSNSGLVKAIIIAGEKIFTGHQDGKVRVWKVQSKHPNNHKRAGSLPKLMDLFKASIKPSNYVEVKRNRTTLWIKHCDAISCLSMDHSEGLLYSASWDRTFKVWKVDKSKC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="109250" PGL_stop="107807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109250" e_stop="108304"/>
            <exon e_start="108224" e_stop="107807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="109250" e_stop="108304" e_length="947"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108303" i_stop="108225" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="108224" e_stop="107807" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109250" stop="108781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109207" stop="108304"/>
              <exon start="108224" stop="108190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109160" stop="108633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109152" stop="108456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109065" stop="108669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108620" stop="108304"/>
              <exon start="108224" stop="107807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCCATGGATTTATTTCTAATTGTTGTTACATTAGCTACCTCCTTTATTCTACTTTTCATTCTTCATAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGAGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGGGATTTATTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAACGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACATGTATG : GCTCTGCTATCGGCAGGCACAGACACAACGATGGTAACTCTAACATGGATTTTATCTCTACTACTCAACAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCCGATATAAAAAACTTAGTTTATTTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGGACCGCTCTCTTTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTATTAGTGAACATATGGAAGATTCAGCGCGATCCTAATATATGGCCAAATCCTCACGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCACAAGGATGTCGATGTAAAGGGCAATCACTTTGAGTTAATGCCATTTG</gDNA_template>
            <first_frame> Y  Y  P  W  I  Y  F  *  L  L  L  H  *  L  P  P  L  F  Y  F  S  F  F  I  N  N  F  T  Q  L  K  S  R  V  V  V  V  E  R  Y  L  K  L  A  E  H  G  L  L  S  A  I  S  T  F  S  V  D  L  N  L  I  T  C  L  T  K  C  W  A  A  W  Q  I  S  T  G  L  F  S  E  *  S  L  E  F  I  R  L  *  L  *  V  I  T  N  *  Q  R  S  A  S  Q  L  T  I  *  P  *  Q  V  G  L  N  Q  W  L  Q  R  L  *  A  T  N  M  L  C  L  D  F  V  L  T  V  R  T  G  E  K  Q  G  K  L  P  Q  L  N  F  S  P  L  D  E  S  R  C  S  N  T  S  E  N  L  R  *  N  Q  V  L  K  R  F  I  I  I  G  R  R  I  I  *  M  V  L  *  R  W  R  *  R  N  G  L  G  I  Y  L  *  T  L  W  G  K  Y  Y  S  E  K  G  E  G  V  T  R  T  K  E  *  I  K  L  T  K  Q  F  E  D  F  S  N  C  *  E  F  L  L  W  L  I  F  Y  L  I  *  D  G  W  T  L  E  A  M  R  K  R  *  R  R  F  L  K  K  W  T  L  L  L  K  N  G  *  Q  S  T  K  R  R  E  E  L  L  N  L  V  K  K  K  I  S  W  M  *  C  F  P  F  V  K  T  E  I  Y  L  E  L  M  P  I  P  L  S  K  L  H  V  W :   L  C  Y  R  Q  A  Q  T  Q  R  W  *  L  *  H  G  F  Y  L  Y  Y  S  T  T  I  N  H  F  K  R  L  K  M  S  *  T  L  M  L  A  R  I  D  G  S  K  N  P  I  *  K  T  *  F  I  F  K  L  L  L  K  K  H  Y  V  Y  I  Q  L  D  R  S  L  Y  H  T  S  R  W  R  I  V  L  S  V  G  M  I  Y  Q  K  A  L  A  Y  *  *  T  Y  G  R  F  S  A  I  L  I  Y  G  Q  I  L  T  S  L  S  Q  R  G  S  C  R  P  T  R  M  S  M  *  R  A  I  T  L  S  *  C  H  L </first_frame>
            <second_frame>  I  T  H  G  F  I  S  N  C  C  Y  I  S  Y  L  L  Y  S  T  F  H  S  S  *  T  I  L  L  S  *  K  A  E  *  *  *  *  K  G  T  *  S  W  R  S  M  A  Y  Y  R  P  S  P  P  S  R  W  I  *  I  *  S  L  A  S  Q  N  V  G  P  L  G  R  *  V  R  A  Y  F  R  N  E  A  W  S  S  S  G  C  S  C  E  *  S  Q  I  S  K  G  V  L  H  N  *  R  F  S  P  S  R  S  A  *  I  N  G  F  R  D  Y  R  L  Q  T  C  Y  V  W  T  L  F  L  R  S  V  L  E  R  N  K  E  N  C  H  N  *  T  F  L  R  S  T  N  R  D  A  Q  T  H  Q  R  I  *  G  K  I  R  Y  *  R  D  L  *  *  L  G  E  E  *  F  K  W  C  C  E  D  G  D  E  G  M  D  W  G  F  I  Y  E  H  Y  G  E  N  I  I  R  K  R  A  K  E  *  R  G  R  R  N  K  *  S  S  Q  S  N  S  K  I  F  R  I  V  R  S  F  C  C  G  *  F  F  T  L  F  K  M  A  G  H  W  R  P  *  E  S  D  E  G  G  F  *  R  N  G  L  C  C  *  R  M  V  N  R  A  Q  N  E  E  R  N  Y  *  I  W  *  R  R  R  F  H  G  C  N  A  F  R  L  *  R  Q  R  S  T  W  S  *  C  R  Y  R  Y  Q  S  Y  M  Y   : G  S  A  I  G  R  H  R  H  N  D  G  N  S  N  M  D  F  I  S  T  T  Q  Q  L  S  I  T  S  K  G  S  R  *  A  R  R  S  C  W  Q  E  *  M  G  P  R  I  R  Y  K  K  L  S  L  F  S  S  Y  C  *  R  S  I  T  F  I  S  S  W  T  A  L  F  T  T  R  V  D  G  G  L  Y  Y  Q  W  V  *  Y  T  K  R  H  S  L  I  S  E  H  M  E  D  S  A  R  S  *  Y  M  A  K  S  S  R  V  *  A  R  E  V  L  V  D  P  Q  G  C  R  C  K  G  Q  S  L  *  V  N  A  I   </second_frame>
            <third_frame>   L  P  M  D  L  F  L  I  V  V  T  L  A  T  S  F  I  L  L  F  I  L  H  K  Q  F  Y  S  V  K  K  Q  S  S  S  S  R  K  V  P  E  A  G  G  A  W  P  I  I  G  H  L  H  L  L  G  G  S  E  S  D  H  L  P  H  K  M  L  G  R  L  A  D  K  Y  G  P  I  F  G  M  K  L  G  V  H  Q  V  V  V  V  S  D  H  K  L  A  K  E  C  F  T  T  N  D  L  A  L  A  G  R  P  K  S  M  A  S  E  I  I  G  Y  K  H  A  M  F  G  L  C  S  Y  G  P  Y  W  R  E  T  R  K  I  A  T  I  E  L  F  S  A  R  R  I  E  M  L  K  H  I  R  E  F  E  V  K  S  G  I  K  E  I  Y  N  N  W  E  K  N  N  L  N  G  V  V  K  M  E  M  K  E  W  I  G  D  L  F  M  N  T  M  G  K  I  L  F  G  K  G  R  R  S  N  E  D  E  G  I  N  K  A  H  K  A  I  R  R  F  F  E  L  L  G  V  F  V  V  A  D  F  L  P  Y  L  R  W  L  D  I  G  G  H  E  K  A  M  K  E  V  S  K  E  M  D  S  V  V  E  E  W  L  T  E  H  K  T  K  R  G  I  I  K  S  G  E  E  E  D  F  M  D  V  M  L  S  V  C  E  D  R  D  L  P  G  V  D  A  D  T  A  I  K  A  T  C  M  :  A  L  L  S  A  G  T  D  T  T  M  V  T  L  T  W  I  L  S  L  L  L  N  N  Y  Q  S  L  Q  K  A  Q  D  E  L  D  A  H  V  G  K  N  R  W  V  Q  E  S  D  I  K  N  L  V  Y  F  Q  A  I  V  K  E  A  L  R  L  Y  P  A  G  P  L  S  L  P  H  E  S  M  E  D  C  T  I  S  G  Y  D  I  P  K  G  T  R  L  L  V  N  I  W  K  I  Q  R  D  P  N  I  W  P  N  P  H  E  F  K  P  E  R  F  L  S  T  H  K  D  V  D  V  K  G  N  H  F  E  L  M  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109248" stop="108304"/>
                    <exon start="108224" stop="107808"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPMDLFLIVVTLATSFILLFILHKQFYSVKKQSSSSRKVPEAGGAWPIIGHLHLLGGSESDHLPHKMLGRLADKYGPIFGMKLGVHQVVVVSDHKLAKECFTTNDLALAGRPKSMASEIIGYKHAMFGLCSYGPYWRETRKIATIELFSARRIEMLKHIREFEVKSGIKEIYNNWEKNNLNGVVKMEMKEWIGDLFMNTMGKILFGKGRRSNEDEGINKAHKAIRRFFELLGVFVVADFLPYLRWLDIGGHEKAMKEVSKEMDSVVEEWLTEHKTKRGIIKSGEEEDFMDVMLSVCEDRDLPGVDADTAIKATCMALLSAGTDTTMVTLTWILSLLLNNYQSLQKAQDELDAHVGKNRWVQESDIKNLVYFQAIVKEALRLYPAGPLSLPHESMEDCTISGYDIPKGTRLLVNIWKIQRDPNIWPNPHEFKPERFLSTHKDVDVKGNHFELMPF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109250" e_stop="108309"/>
            <exon e_start="108224" e_stop="107928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.934"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="109250" e_stop="108309" e_length="942"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108308" i_stop="108225" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="108224" e_stop="107928" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109250" stop="108781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109160" stop="108633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109152" stop="108456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109065" stop="108669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108608" stop="108309"/>
              <exon start="108224" stop="107928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTACCCATGGATTTATTTCTAATTGTTGTTACATTAGCTACCTCCTTTATTCTACTTTTCATTCTTCATAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGTAGAAAGGTACCTGAAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGGTGGATCTGAATCTGATCACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGTGATCACAAATTAGCAAAGGAGTGCTTCACAACTAACGATTTAGCCCTAGCAGGTCGGCCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGCTATGTTTGGACTTTGTTCTTACGGTCCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGCTCGACGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCAGGTATTAAAGAGATTTATAATAATTGGGAGAAGAATAATTTAAATGGTGTTGTGAAGATGGAGATGAAGGAATGGATTGGGGATTTATTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAACGAGGACGAAGGAATAAATAAAGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGTTTTTGTTGTGGCTGATTTTTTACCTTATTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAAATGGACTCTGTTGTTGAAGAATGGTTAACAGAGCACAAAACGAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTAATGCTTTCCGTTTGTGAAGACAGAGATCTACCTGGAGTTGATGCCGATACCGCTATCAAAGCTACAT : GCTCTGCTATCGGCAGGCACAGACACAACGATGGTAACTCTAACATGGATTTTATCTCTACTACTCAACAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAATAGATGGGTCCAAGAATCCGATATAAAAAACTTAGTTTATTTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGGACCGCTCTCTTTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTATTAGTGAACATA</gDNA_template>
            <first_frame> Y  Y  P  W  I  Y  F  *  L  L  L  H  *  L  P  P  L  F  Y  F  S  F  F  I  N  N  F  T  Q  L  K  S  R  V  V  V  V  E  R  Y  L  K  L  A  E  H  G  L  L  S  A  I  S  T  F  S  V  D  L  N  L  I  T  C  L  T  K  C  W  A  A  W  Q  I  S  T  G  L  F  S  E  *  S  L  E  F  I  R  L  *  L  *  V  I  T  N  *  Q  R  S  A  S  Q  L  T  I  *  P  *  Q  V  G  L  N  Q  W  L  Q  R  L  *  A  T  N  M  L  C  L  D  F  V  L  T  V  R  T  G  E  K  Q  G  K  L  P  Q  L  N  F  S  P  L  D  E  S  R  C  S  N  T  S  E  N  L  R  *  N  Q  V  L  K  R  F  I  I  I  G  R  R  I  I  *  M  V  L  *  R  W  R  *  R  N  G  L  G  I  Y  L  *  T  L  W  G  K  Y  Y  S  E  K  G  E  G  V  T  R  T  K  E  *  I  K  L  T  K  Q  F  E  D  F  S  N  C  *  E  F  L  L  W  L  I  F  Y  L  I  *  D  G  W  T  L  E  A  M  R  K  R  *  R  R  F  L  K  K  W  T  L  L  L  K  N  G  *  Q  S  T  K  R  R  E  E  L  L  N  L  V  K  K  K  I  S  W  M  *  C  F  P  F  V  K  T  E  I  Y  L  E  L  M  P  I  P  L  S  K  L  H  :  A  L  L  S  A  G  T  D  T  T  M  V  T  L  T  W  I  L  S  L  L  L  N  N  Y  Q  S  L  Q  K  A  Q  D  E  L  D  A  H  V  G  K  N  R  W  V  Q  E  S  D  I  K  N  L  V  Y  F  Q  A  I  V  K  E  A  L  R  L  Y  P  A  G  P  L  S  L  P  H  E  S  M  E  D  C  T  I  S  G  Y  D  I  P  K  G  T  R  L  L  V  N  I </first_frame>
            <second_frame>  I  T  H  G  F  I  S  N  C  C  Y  I  S  Y  L  L  Y  S  T  F  H  S  S  *  T  I  L  L  S  *  K  A  E  *  *  *  *  K  G  T  *  S  W  R  S  M  A  Y  Y  R  P  S  P  P  S  R  W  I  *  I  *  S  L  A  S  Q  N  V  G  P  L  G  R  *  V  R  A  Y  F  R  N  E  A  W  S  S  S  G  C  S  C  E  *  S  Q  I  S  K  G  V  L  H  N  *  R  F  S  P  S  R  S  A  *  I  N  G  F  R  D  Y  R  L  Q  T  C  Y  V  W  T  L  F  L  R  S  V  L  E  R  N  K  E  N  C  H  N  *  T  F  L  R  S  T  N  R  D  A  Q  T  H  Q  R  I  *  G  K  I  R  Y  *  R  D  L  *  *  L  G  E  E  *  F  K  W  C  C  E  D  G  D  E  G  M  D  W  G  F  I  Y  E  H  Y  G  E  N  I  I  R  K  R  A  K  E  *  R  G  R  R  N  K  *  S  S  Q  S  N  S  K  I  F  R  I  V  R  S  F  C  C  G  *  F  F  T  L  F  K  M  A  G  H  W  R  P  *  E  S  D  E  G  G  F  *  R  N  G  L  C  C  *  R  M  V  N  R  A  Q  N  E  E  R  N  Y  *  I  W  *  R  R  R  F  H  G  C  N  A  F  R  L  *  R  Q  R  S  T  W  S  *  C  R  Y  R  Y  Q  S  Y  M :   L  C  Y  R  Q  A  Q  T  Q  R  W  *  L  *  H  G  F  Y  L  Y  Y  S  T  T  I  N  H  F  K  R  L  K  M  S  *  T  L  M  L  A  R  I  D  G  S  K  N  P  I  *  K  T  *  F  I  F  K  L  L  L  K  K  H  Y  V  Y  I  Q  L  D  R  S  L  Y  H  T  S  R  W  R  I  V  L  S  V  G  M  I  Y  Q  K  A  L  A  Y  *  *  T   </second_frame>
            <third_frame>   L  P  M  D  L  F  L  I  V  V  T  L  A  T  S  F  I  L  L  F  I  L  H  K  Q  F  Y  S  V  K  K  Q  S  S  S  S  R  K  V  P  E  A  G  G  A  W  P  I  I  G  H  L  H  L  L  G  G  S  E  S  D  H  L  P  H  K  M  L  G  R  L  A  D  K  Y  G  P  I  F  G  M  K  L  G  V  H  Q  V  V  V  V  S  D  H  K  L  A  K  E  C  F  T  T  N  D  L  A  L  A  G  R  P  K  S  M  A  S  E  I  I  G  Y  K  H  A  M  F  G  L  C  S  Y  G  P  Y  W  R  E  T  R  K  I  A  T  I  E  L  F  S  A  R  R  I  E  M  L  K  H  I  R  E  F  E  V  K  S  G  I  K  E  I  Y  N  N  W  E  K  N  N  L  N  G  V  V  K  M  E  M  K  E  W  I  G  D  L  F  M  N  T  M  G  K  I  L  F  G  K  G  R  R  S  N  E  D  E  G  I  N  K  A  H  K  A  I  R  R  F  F  E  L  L  G  V  F  V  V  A  D  F  L  P  Y  L  R  W  L  D  I  G  G  H  E  K  A  M  K  E  V  S  K  E  M  D  S  V  V  E  E  W  L  T  E  H  K  T  K  R  G  I  I  K  S  G  E  E  E  D  F  M  D  V  M  L  S  V  C  E  D  R  D  L  P  G  V  D  A  D  T  A  I  K  A  T   : C  S  A  I  G  R  H  R  H  N  D  G  N  S  N  M  D  F  I  S  T  T  Q  Q  L  S  I  T  S  K  G  S  R  *  A  R  R  S  C  W  Q  E  *  M  G  P  R  I  R  Y  K  K  L  S  L  F  S  S  Y  C  *  R  S  I  T  F  I  S  S  W  T  A  L  F  T  T  R  V  D  G  G  L  Y  Y  Q  W  V  *  Y  T  K  R  H  S  L  I  S  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109248" stop="108309"/>
                    <exon start="108224" stop="108124"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPMDLFLIVVTLATSFILLFILHKQFYSVKKQSSSSRKVPEAGGAWPIIGHLHLLGGSESDHLPHKMLGRLADKYGPIFGMKLGVHQVVVVSDHKLAKECFTTNDLALAGRPKSMASEIIGYKHAMFGLCSYGPYWRETRKIATIELFSARRIEMLKHIREFEVKSGIKEIYNNWEKNNLNGVVKMEMKEWIGDLFMNTMGKILFGKGRRSNEDEGINKAHKAIRRFFELLGVFVVADFLPYLRWLDIGGHEKAMKEVSKEMDSVVEEWLTEHKTKRGIIKSGEEEDFMDVMLSVCEDRDLPGVDADTAIKATCSAIGRHRHNDGNSNMDFISTTQQLSITSKGSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="116263" PGL_stop="115456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116263" e_stop="115456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="116263" e_stop="115456" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116263" stop="115456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGATATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTAATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  I  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  *  Y  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  D  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  N  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116261" stop="115458"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFDMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGNTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="116922" PGL_stop="116274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116922" e_stop="116274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="116922" e_stop="116274" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116922" stop="116274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116921" stop="116537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAAAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTTGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  K  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  K  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  L  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  E  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  W  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116921" stop="116274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNERDLKEPEEEDQEPQTKTDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPLGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="123327" PGL_stop="121360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123327" e_stop="122180"/>
            <exon e_start="122104" e_stop="121360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="123327" e_stop="122180" e_length="1148"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122179" i_stop="122105" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="122104" e_stop="121360" e_length="745"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123327" stop="122801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123264" stop="122648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122931" stop="122487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122543" stop="122180"/>
              <exon start="122104" stop="121925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122509" stop="122180"/>
              <exon start="122104" stop="121982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122307" stop="122180"/>
              <exon start="122104" stop="121360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122091" stop="121661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCCAAAAATAGGAGAGGATCCACAGTAACTGTCTTTTCCACACCAAAAAGTTATGTCAACGCTTTCGTATACAAATTCATATTTACGATTCATGCGTCTAAGTTTTCATAAAAATAAACAAGGTAAGAGTGTTATCACTTACCCCAATCTCTCTACATAAATTTCAAGTGTCTCACATCGAAGAGGACGACTGATAAATTTTATTAGCAATGGATCCCTTTCTAATTGCTGTTACATTAGCTACCTCCTTTTTTCTAATTTTCTTTCTTCAGAAACAATTTTACTCAGTTAAAAAGCAGAGTAGTAGTAGAAAGGTACCTGGAGCTGGCGGAGCATGGCCTATTATCGGCCATCTCCACCTTCTCGCTGGATCTGAATCTGATCACTTGCCTCACAAAACGTTGAGCCGCATGGCAGATAAGTACGGGCCGATATTCGGAATGAAGCTTGGAGTTCATCAGGTTGTAGTTGTGAGCGATCCCAAATTAGTCAAAGAATGCTTCACAACTAACGATTTAGCCCTAGCCAACCGGCCTAAATCCATGGTTTCAGAGATTATAGGCTACAAAGACGCTATGTTTGGACTTTGTTCTTACGGTCCTTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCAGCTCGGCGAATCGAGATGCTCAAACACATCAGAGAATTTGAGGTAAAATCATCTGTTAAAGAGATTTATAATAATTGGGGGAAGAATAATTTAAATGGTTTTGTGAAGATGGAGATGAAGGAATGGATTGGAGATTTAGTTATGAACACTATGGGGAAAATATTATTCGGAAAAGGGCGAAGGAGTAATGAGGACGAAGGAATAAATAAGGCTCACAAAGCAATTCGAAGATTTTTCGAATTGTTAGGAGCTTTTGTTGTGGCTGATTTTTTACCTTACTTAAGATGGCTGGACATTGGAGGCCATGAGAAAGCGATGAAGGAGGTTTCTAAAGAATTGGACTCTGTTGTTGCAGAATGGTTAACAGAGCACAAAACAAAGAGAGGAATTATTAAATCTGGTGAAGAAGAAGATTTCATGGATGTCATGCTTTCCATTTGTGAAGACAGAGATCTGCTTGGATTCGATGCCGATACCGCTATCAAAGCTACATGTATG : GCTCTGCTATCGGCAGGTACAGACACGACGATTGTAACTCTAACGTGGACTTTATCTCTACTACTCAATAACTATCAATCACTTCAAAAGGCTCAAGATGAGCTAGACGCTCATGTTGGCAAGAACAGATGGGTCCAAGAATCGGATATAAAAAGCTTAGTTTATCTTCAAGCTATTGTTAAAGAAGCATTACGTTTATATCCAGCTGCACCACTCTCAGTACCACACGAGTCGATGGAGGATTGTACTATCAGTGGGTATGATATACCAAAAGGCACTCGCTTACTAGTGAACTTATGGAAGATTCAGCACGATCCTAATATATGGCCAAATCCTCTCGAGTTTAAGCCAGAGAGGTTCTTGTCGACCCATAAGGATGTGGATGTAAAGGGCAATCACTTTGAGTTAATGCCATTTGGTAGTGGAAGAAGAATGTGCCCTGGAATTTCGTTAGCCCTTCAAGTTTTGCCCTTTGTAATTGCAAAATTGCTGCAGGGTTTTAACATGAAGAGGCCTTCAGATGAACCAATTGATATGAGTGAGAGCTTTGGATTGACCGTACTCAAAGCTTCTCCACTCGAAGTTCTCCTTGCTCCGCGCTTGGCTCCCGATCTTTATGAATGAAATGATAGACAAAACTTGTGCCTCATGCCACTGTTGTTTACTACAAGTTTGTAATATTGTAATGCAGATAATAACAGAACTTAAAAATTCCTTCATTTGAAATGCGATTGTAAAAGTATTT</gDNA_template>
            <first_frame> S  P  K  N  R  R  G  S  T  V  T  V  F  S  T  P  K  S  Y  V  N  A  F  V  Y  K  F  I  F  T  I  H  A  S  K  F  S  *  K  *  T  R  *  E  C  Y  H  L  P  Q  S  L  Y  I  N  F  K  C  L  T  S  K  R  T  T  D  K  F  Y  *  Q  W  I  P  F  *  L  L  L  H  *  L  P  P  F  F  *  F  S  F  F  R  N  N  F  T  Q  L  K  S  R  V  V  V  E  R  Y  L  E  L  A  E  H  G  L  L  S  A  I  S  T  F  S  L  D  L  N  L  I  T  C  L  T  K  R  *  A  A  W  Q  I  S  T  G  R  Y  S  E  *  S  L  E  F  I  R  L  *  L  *  A  I  P  N  *  S  K  N  A  S  Q  L  T  I  *  P  *  P  T  G  L  N  P  W  F  Q  R  L  *  A  T  K  T  L  C  L  D  F  V  L  T  V  L  T  G  E  K  Q  G  K  L  P  Q  L  N  F  S  Q  L  G  E  S  R  C  S  N  T  S  E  N  L  R  *  N  H  L  L  K  R  F  I  I  I  G  G  R  I  I  *  M  V  L  *  R  W  R  *  R  N  G  L  E  I  *  L  *  T  L  W  G  K  Y  Y  S  E  K  G  E  G  V  M  R  T  K  E  *  I  R  L  T  K  Q  F  E  D  F  S  N  C  *  E  L  L  L  W  L  I  F  Y  L  T  *  D  G  W  T  L  E  A  M  R  K  R  *  R  R  F  L  K  N  W  T  L  L  L  Q  N  G  *  Q  S  T  K  Q  R  E  E  L  L  N  L  V  K  K  K  I  S  W  M  S  C  F  P  F  V  K  T  E  I  C  L  D  S  M  P  I  P  L  S  K  L  H  V  W :   L  C  Y  R  Q  V  Q  T  R  R  L  *  L  *  R  G  L  Y  L  Y  Y  S  I  T  I  N  H  F  K  R  L  K  M  S  *  T  L  M  L  A  R  T  D  G  S  K  N  R  I  *  K  A  *  F  I  F  K  L  L  L  K  K  H  Y  V  Y  I  Q  L  H  H  S  Q  Y  H  T  S  R  W  R  I  V  L  S  V  G  M  I  Y  Q  K  A  L  A  Y  *  *  T  Y  G  R  F  S  T  I  L  I  Y  G  Q  I  L  S  S  L  S  Q  R  G  S  C  R  P  I  R  M  W  M  *  R  A  I  T  L  S  *  C  H  L  V  V  E  E  E  C  A  L  E  F  R  *  P  F  K  F  C  P  L  *  L  Q  N  C  C  R  V  L  T  *  R  G  L  Q  M  N  Q  L  I  *  V  R  A  L  D  *  P  Y  S  K  L  L  H  S  K  F  S  L  L  R  A  W  L  P  I  F  M  N  E  M  I  D  K  T  C  A  S  C  H  C  C  L  L  Q  V  C  N  I  V  M  Q  I  I  T  E  L  K  N  S  F  I  *  N  A  I  V  K  V  F </first_frame>
            <second_frame>  L  P  K  I  G  E  D  P  Q  *  L  S  F  P  H  Q  K  V  M  S  T  L  S  Y  T  N  S  Y  L  R  F  M  R  L  S  F  H  K  N  K  Q  G  K  S  V  I  T  Y  P  N  L  S  T  *  I  S  S  V  S  H  R  R  G  R  L  I  N  F  I  S  N  G  S  L  S  N  C  C  Y  I  S  Y  L  L  F  S  N  F  L  S  S  E  T  I  L  L  S  *  K  A  E  *  *  *  K  G  T  W  S  W  R  S  M  A  Y  Y  R  P  S  P  P  S  R  W  I  *  I  *  S  L  A  S  Q  N  V  E  P  H  G  R  *  V  R  A  D  I  R  N  E  A  W  S  S  S  G  C  S  C  E  R  S  Q  I  S  Q  R  M  L  H  N  *  R  F  S  P  S  Q  P  A  *  I  H  G  F  R  D  Y  R  L  Q  R  R  Y  V  W  T  L  F  L  R  S  L  L  E  R  N  K  E  N  C  H  N  *  T  F  L  S  S  A  N  R  D  A  Q  T  H  Q  R  I  *  G  K  I  I  C  *  R  D  L  *  *  L  G  E  E  *  F  K  W  F  C  E  D  G  D  E  G  M  D  W  R  F  S  Y  E  H  Y  G  E  N  I  I  R  K  R  A  K  E  *  *  G  R  R  N  K  *  G  S  Q  S  N  S  K  I  F  R  I  V  R  S  F  C  C  G  *  F  F  T  L  L  K  M  A  G  H  W  R  P  *  E  S  D  E  G  G  F  *  R  I  G  L  C  C  C  R  M  V  N  R  A  Q  N  K  E  R  N  Y  *  I  W  *  R  R  R  F  H  G  C  H  A  F  H  L  *  R  Q  R  S  A  W  I  R  C  R  Y  R  Y  Q  S  Y  M  Y   : G  S  A  I  G  R  Y  R  H  D  D  C  N  S  N  V  D  F  I  S  T  T  Q  *  L  S  I  T  S  K  G  S  R  *  A  R  R  S  C  W  Q  E  Q  M  G  P  R  I  G  Y  K  K  L  S  L  S  S  S  Y  C  *  R  S  I  T  F  I  S  S  C  T  T  L  S  T  T  R  V  D  G  G  L  Y  Y  Q  W  V  *  Y  T  K  R  H  S  L  T  S  E  L  M  E  D  S  A  R  S  *  Y  M  A  K  S  S  R  V  *  A  R  E  V  L  V  D  P  *  G  C  G  C  K  G  Q  S  L  *  V  N  A  I  W  *  W  K  K  N  V  P  W  N  F  V  S  P  S  S  F  A  L  C  N  C  K  I  A  A  G  F  *  H  E  E  A  F  R  *  T  N  *  Y  E  *  E  L  W  I  D  R  T  Q  S  F  S  T  R  S  S  P  C  S  A  L  G  S  R  S  L  *  M  K  *  *  T  K  L  V  P  H  A  T  V  V  Y  Y  K  F  V  I  L  *  C  R  *  *  Q  N  L  K  I  P  S  F  E  M  R  L  *  K  Y   </second_frame>
            <third_frame>   S  Q  K  *  E  R  I  H  S  N  C  L  F  H  T  K  K  L  C  Q  R  F  R  I  Q  I  H  I  Y  D  S  C  V  *  V  F  I  K  I  N  K  V  R  V  L  S  L  T  P  I  S  L  H  K  F  Q  V  S  H  I  E  E  D  D  *  *  I  L  L  A  M  D  P  F  L  I  A  V  T  L  A  T  S  F  F  L  I  F  F  L  Q  K  Q  F  Y  S  V  K  K  Q  S  S  S  R  K  V  P  G  A  G  G  A  W  P  I  I  G  H  L  H  L  L  A  G  S  E  S  D  H  L  P  H  K  T  L  S  R  M  A  D  K  Y  G  P  I  F  G  M  K  L  G  V  H  Q  V  V  V  V  S  D  P  K  L  V  K  E  C  F  T  T  N  D  L  A  L  A  N  R  P  K  S  M  V  S  E  I  I  G  Y  K  D  A  M  F  G  L  C  S  Y  G  P  Y  W  R  E  T  R  K  I  A  T  I  E  L  F  S  A  R  R  I  E  M  L  K  H  I  R  E  F  E  V  K  S  S  V  K  E  I  Y  N  N  W  G  K  N  N  L  N  G  F  V  K  M  E  M  K  E  W  I  G  D  L  V  M  N  T  M  G  K  I  L  F  G  K  G  R  R  S  N  E  D  E  G  I  N  K  A  H  K  A  I  R  R  F  F  E  L  L  G  A  F  V  V  A  D  F  L  P  Y  L  R  W  L  D  I  G  G  H  E  K  A  M  K  E  V  S  K  E  L  D  S  V  V  A  E  W  L  T  E  H  K  T  K  R  G  I  I  K  S  G  E  E  E  D  F  M  D  V  M  L  S  I  C  E  D  R  D  L  L  G  F  D  A  D  T  A  I  K  A  T  C  M  :  A  L  L  S  A  G  T  D  T  T  I  V  T  L  T  W  T  L  S  L  L  L  N  N  Y  Q  S  L  Q  K  A  Q  D  E  L  D  A  H  V  G  K  N  R  W  V  Q  E  S  D  I  K  S  L  V  Y  L  Q  A  I  V  K  E  A  L  R  L  Y  P  A  A  P  L  S  V  P  H  E  S  M  E  D  C  T  I  S  G  Y  D  I  P  K  G  T  R  L  L  V  N  L  W  K  I  Q  H  D  P  N  I  W  P  N  P  L  E  F  K  P  E  R  F  L  S  T  H  K  D  V  D  V  K  G  N  H  F  E  L  M  P  F  G  S  G  R  R  M  C  P  G  I  S  L  A  L  Q  V  L  P  F  V  I  A  K  L  L  Q  G  F  N  M  K  R  P  S  D  E  P  I  D  M  S  E  S  F  G  L  T  V  L  K  A  S  P  L  E  V  L  L  A  P  R  L  A  P  D  L  Y  E  *  N  D  R  Q  N  L  C  L  M  P  L  L  F  T  T  S  L  *  Y  C  N  A  D  N  N  R  T  *  K  F  L  H  L  K  C  D  C  K  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123127" stop="122180"/>
                    <exon start="122104" stop="121481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLAMDPFLIAVTLATSFFLIFFLQKQFYSVKKQSSSRKVPGAGGAWPIIGHLHLLAGSESDHLPHKTLSRMADKYGPIFGMKLGVHQVVVVSDPKLVKECFTTNDLALANRPKSMVSEIIGYKDAMFGLCSYGPYWRETRKIATIELFSARRIEMLKHIREFEVKSSVKEIYNNWGKNNLNGFVKMEMKEWIGDLVMNTMGKILFGKGRRSNEDEGINKAHKAIRRFFELLGAFVVADFLPYLRWLDIGGHEKAMKEVSKELDSVVAEWLTEHKTKRGIIKSGEEEDFMDVMLSICEDRDLLGFDADTAIKATCMALLSAGTDTTIVTLTWTLSLLLNNYQSLQKAQDELDAHVGKNRWVQESDIKSLVYLQAIVKEALRLYPAAPLSVPHESMEDCTISGYDIPKGTRLLVNLWKIQHDPNIWPNPLEFKPERFLSTHKDVDVKGNHFELMPFGSGRRMCPGISLALQVLPFVIAKLLQGFNMKRPSDEPIDMSESFGLTVLKASPLEVLLAPRLAPDLYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 143 chains have been computed
$ 
$ memory statistics:
$ 254584 bytes spliced alignments in total
$ 107 spliced alignments have been stored
$ 2379 bytes was the average size of a spliced alignment
$ 28904 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1521 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 159 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 05:25:15
-->
