<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 05:24:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E377799" ref_strand="-" ref_description="SGN-E377799 [TUS-21-P17]">
      <seq>ttttgtccttattaaatatggttaaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatttaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatttactacaatttgtgcgggtttggttatgattcattattggtccagctatttaatctgttttggcccaaacaaattgggttgggttgaaataaggttcggttcatttattattttgatccgtctaaatgtaattcaatctgttcaattgccggtcttattatgattatgggcgaactaatgtctatccctaccgaaagctgttaggtttgctacgcataaagttgggacgtttataattttttctgtctttttattgtctggcctatccaattgaagaatttcgacatatatatatcttatcggtgaagaattcgtcacatttggtgtttacaataataaaccatatattttttcaatgttcacagatttgtgtctaacaataataatcatagtttggtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3275" stop="2054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2975" g_stop="2358" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="641"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E377799" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377799" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2975" e_stop="2358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAGAGTTGGGACGTTTATAATTTCTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</genome_strand>
        <mrna_strand>TTTTGTCCTTATTAAATATGGTTAAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATTTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATTTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATTTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAAAGTTGGGACGTTTATAATTTTTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E235539" ref_strand="+" ref_description="SGN-E235539 [cLED-11-N15]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaatttgtgcgggtttggttatgattcattattggtccagctatctaatctgttttggcccaaacaaattgggttgggttgaaataaggttcggttcatttattattttgatccgtctaaatgtaattcaatctgttcaattgccggtcttattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2597" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E235539" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATG</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E377800" ref_strand="+" ref_description="SGN-E377800 [TUS-21-P17]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaatttgtgcgggtttggttatgattcattattggtccagctatctaatctgttttggcccaaacaaattgggttgggttgaaataaggttcggttcatttattattttgatccgtctaaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2629" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E377800" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTA</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E242493" ref_strand="+" ref_description="SGN-E242493 [cLED-30-M19]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaatttgtgcgggtttggttatgattcattattggtccagctatctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2703" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E242493" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCT</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E240640" ref_strand="+" ref_description="SGN-E240640 [cLED-21-L14]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2750" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E240640" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAAT</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E242980" ref_strand="+" ref_description="SGN-E242980 [cLED-31-J6]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2751" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E242980" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAA</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E240540" ref_strand="+" ref_description="SGN-E240540 [cLED-21-M13]">
      <seq>aattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagctctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagtttaatgagagtatgataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3525" stop="2595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3225" g_stop="2895" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E240540" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3225" e_stop="2895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGA</genome_strand>
        <mrna_strand>AATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGCTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTTAATGAGAGTATGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E745545" ref_strand="+" ref_description="SGN-E745545 [GI|47105909]">
      <seq>atagctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggtaactgatcacattaatatttggatggtagcctatgttgctgttgttcacactgatatttggtcacaggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactctaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaattactgaagtcgcactaggttaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccctgagaaggtgttagctgtgatcatctttaagatgaaaggaatccgcatgtagtgtagcagttgaagttgattccaggatgagatttgttatgccgagtaaagatttcgatataagatctaatctcaatgagttccaagggtagtggtttgaccataaagatcttgcagacttaattctttattcatcttaaaatgaacaaataatattaaatttcccaatcactaataccttgttctagtgtctatttgctttatggtcttgaaagtgttcttcaagtacatagcacacccccatacagtgcatgatttcatgcttatacttgtgaagttctagctgatatctgtagatctgttgttgctgttggctgattgcttatcaaactgatcctgctttttggtgttgatggtttgcttgatgtgtttaattggatcctctgcacgtgccttctgaaggagcttaagctgtgtgtttatgatgtgctgactgccatgtctcctctggtatgcaccaatctgggttctttttcatcgagatgtgtgcacattatcaatttggagatttgatcgattcctgtgagatgtttaatttatcgaacataaccttctttgattacatcttcaagtgtctggaatttgtgtccctggacagcggttaaattacctcatttaggtgttccccatacagaatttgtgtcctctcatatgagtcttgttcgtatgtgcttgttaccatattgaacaatctctttttgctaaatggctgagtttgacttgtttggagaggaagttggggaaggtaactagatataaatttggtcttttacttgttacgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9372" stop="2976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9072" g_stop="8940" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="212" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7731" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="428" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="500" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="710" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="897" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="1031" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4528" g_stop="3279" g_length="1250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1032" r_stop="2281" r_length="1250" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2282" polyA_stop="2298"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E745545" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2281</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9072" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="3279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGAA</genome_strand>
        <mrna_strand>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCTAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E246003" ref_strand="+" ref_description="SGN-E246003 [cLEF-54-K10]">
      <seq>caatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaattactgaagtcgcactaggttaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccctgagaaggtgttagctgtgatcatctttaagatgaaaggaatccgcatgtagtgtagcagttgaagttgattccaggatgagatttgttatgccgagtaaagatttcgatataagatctaatctcaatgagttccaagggtagtggtttgaccataaacatcttgcagacttaattctttattcatcttaaaatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="4812" stop="3614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4512" g_stop="3914" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E246003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4512" e_stop="3914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</genome_strand>
        <mrna_strand>CAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAACATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E728563" ref_strand="+" ref_description="SGN-E728563 [LA18AH07]">
      <seq>gattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaatttactgagtcgcactagggtaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5748" stop="3813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5448" g_stop="5261" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="375" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="509" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4528" g_stop="4113" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="925" r_length="416" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E728563" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5448" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="4113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAA-TTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCC</genome_strand>
        <mrna_strand>GATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTTACTG-AGTCGCACTAGGGTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E235741" ref_strand="+" ref_description="SGN-E235741 [cLED-15-P4]">
      <seq>atcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgntatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5154" stop="4079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4854" g_stop="4777" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4528" g_stop="4379" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="228" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E235741" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4854" e_stop="4777"/>
          <exon e_start="4528" e_stop="4379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCT</genome_strand>
        <mrna_strand>ATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGNTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E552840" ref_strand="+" ref_description="SGN-E552840 [cTSB-5-D17]">
      <seq>ggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttaaccagaacttcttttgatgttacatctgcattctggtattatggaatggttttgtgatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8201" stop="4387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7901" g_stop="7867" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="102" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="174" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="384" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="571" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4910" g_stop="4681" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="801" r_length="230" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E552840" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7901" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAA</genome_strand>
        <mrna_strand>GGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E215636" ref_strand="-" ref_description="SGN-E215636 [cLEL-15-K11]">
      <seq>ccgaagtcggtctcatggaaaaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttaaccagaacttcttttgatgttacatctgcattctggtattatggaatggttttgtgatattaagattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5581" stop="4381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5281" g_stop="5261" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="208" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4688" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="431" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="451"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E215636" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215636" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5281" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAG</genome_strand>
        <mrna_strand>CCGAAGTCGGTCTCATGGAAA............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E703017" ref_strand="+" ref_description="SGN-E703017 [FA20BD01]">
      <seq>ctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagntgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactgggtggccagacttattttataggtttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9368" stop="4469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9068" g_stop="8940" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="208" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="288" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="355" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="427" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="637" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5165" g_stop="4982" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="821" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4769" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="963" r_length="142" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E703017" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>963</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9068" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5165" e_stop="4982"/>
          <exon e_start="4910" e_stop="4769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACT</genome_strand>
        <mrna_strand>CTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG...............................................................................................TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGNTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGGTGGCCAGACTTATTTTATAGGTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E345865" ref_strand="+" ref_description="SGN-E345865 [cTOF-24-O11]">
      <seq>tcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagatgtaatctggctctggatgatgctgcgtatcangacattcctaagtgaatgatactgtcatctgtattctgcttgctagaactggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8204" stop="4494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7904" g_stop="7867" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="105" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="177" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="387" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="574" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4910" g_stop="4794" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="691" r_length="117" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E345865" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7904" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGG</genome_strand>
        <mrna_strand>TCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGATGTAATCTGGCTCTGGATGATGCTGCGTATCANGACATTCCTAAGTGAATGATACTGTCATCTGTATTCTGCTTGCTAGAACTGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E704174" ref_strand="+" ref_description="SGN-E704174 [FA23CC02]">
      <seq>cattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacatttcctagtgaatgatancttcatctgtattctgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9355" stop="4506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9055" g_stop="8940" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="195" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="275" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="414" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="624" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="811" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4806" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="916" r_length="105" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E704174" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9055" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCT</genome_strand>
        <mrna_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTTCCTAGTGAATGATANCTTCATCTGTATTCTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E730681" ref_strand="+" ref_description="SGN-E730681 [LA24DD09]">
      <seq>cttctctccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaacgagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggntgatgctgcgtatcaggacatccctaagtgaatgatactttcatctggattctgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9335" stop="4506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9035" g_stop="8940" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="175" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="255" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="322" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="394" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="604" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="791" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4806" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="896" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E730681" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9035" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCT</genome_strand>
        <mrna_strand>CTTCTCTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAACGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGNTGATGCTGCGTATCAGGACATCCCTAAGTGAATGATACTTTCATCTGGATTCTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E703652" ref_strand="+" ref_description="SGN-E703652 [FA22AD05]">
      <seq>cattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggaagcaagggaggagccacagttgtaatctggctttgggtgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtaatctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9355" stop="4508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9055" g_stop="8940" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="195" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="275" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="414" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="624" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="811" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4808" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="915" r_length="104" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E703652" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9055" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGG-AGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTG</genome_strand>
        <mrna_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGGTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTAATCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E701148" ref_strand="+" ref_description="SGN-E701148 [FA15AF08]">
      <seq>cggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9320" stop="4520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9020" g_stop="8940" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="160" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="240" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="307" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="379" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="589" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="776" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4820" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="867" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E701148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9020" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</genome_strand>
        <mrna_strand>CGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E246064" ref_strand="+" ref_description="SGN-E246064 [cLEF-54-O4]">
      <seq>aggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8202" stop="4520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7902" g_stop="7867" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="103" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="175" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="385" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="572" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4910" g_stop="4820" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="663" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E246064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7902" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</genome_strand>
        <mrna_strand>AGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E727416" ref_strand="+" ref_description="SGN-E727416 [LA14CE08]">
      <seq>atatagctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaagagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagggaatgatactttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9374" stop="4523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9074" g_stop="8940" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="214" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="294" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="643" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="830" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4823" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="918" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E727416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9074" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCA</genome_strand>
        <mrna_strand>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAAGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGGGAATGATACTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E709367" ref_strand="+" ref_description="SGN-E709367 [FA51CG07]">
      <seq>cgctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagacgtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaacctccaaagagtatatcacctcggggtagacgtgctggttctcccagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9119" stop="4556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8821" g_stop="8765" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="137" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="204" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="276" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="486" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="674" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4910" g_stop="4856" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="729" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E709367" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8821" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAA-CTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCG</genome_strand>
        <mrna_strand>CGCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGACGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACCTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCCCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E699243" ref_strand="+" ref_description="SGN-E699243 [FA09BA02]">
      <seq>tatccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9359" stop="4681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9059" g_stop="8940" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="199" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="279" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="346" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="628" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="815" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4903" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="823" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E699243" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9059" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGG</genome_strand>
        <mrna_strand>TATCCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E698763" ref_strand="+" ref_description="SGN-E698763 [FA07CA11]">
      <seq>cccttaaggttcattaaccttatctgtcttcactccggcgacctgcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9353" stop="4681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9062" g_stop="8940" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="202" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="282" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="349" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="421" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="631" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="818" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E698763" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9062" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</genome_strand>
        <mrna_strand>CCCTTAAGGTTCATTAACCTTATCTGTCTTCACTCCGGCGACCTGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E705922" ref_strand="+" ref_description="SGN-E705922 [FA28CA12]">
      <seq>ctaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9324" stop="4681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9024" g_stop="8940" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="164" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="244" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="311" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="383" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="593" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="780" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E705922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9024" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</genome_strand>
        <mrna_strand>CTAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E711084" ref_strand="+" ref_description="SGN-E711084 [FA57DH05]">
      <seq>attcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattccctccccgcccccccccattagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatccacaaggaccggtctccaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9354" stop="4750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9054" g_stop="8940" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="194" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="274" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="341" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="413" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="624" r_length="211" r_score="0.924"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5050" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="744" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E711084" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9054" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATT-CTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAAT-CACAAGGACCGGTCTCCAACTC</genome_strand>
        <mrna_strand>ATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCCCTCCCCGCCCCCCCCCATTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCCACAAGGACCGGTCTCCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E689260" ref_strand="+" ref_description="SGN-E689260 [t3_tus_80_M12]">
      <seq>cgattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaagctttagccggtacctgcactgttaggtagaaggatgcaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggaacccttctccacaaagaacaactcctcctagggatgctagtccaaatggacgtaatcacaaggaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9356" stop="4761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9056" g_stop="8940" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="196" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8183" g_stop="8145" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="235" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198">
            <donor d_prob="0.267" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="315" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="382" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="454" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="664" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5168" g_stop="5061" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="772" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E689260" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9056" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="8183" e_stop="8145"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCG</genome_strand>
        <mrna_strand>CGATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG......................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAACCCTTCTCCACAAAGAACAACTCCTCCTAGGGATGCTAGTCCAAATGGACGTAATCACAAGGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E348910" ref_strand="+" ref_description="SGN-E348910 [cTOF-29-M13]">
      <seq>ccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctnccctgctcgccgtagccccagtcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9345" stop="4833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9045" g_stop="8940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="185" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="332" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="404" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="614" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5133" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="650" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E348910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9045" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCG</genome_strand>
        <mrna_strand>CCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTNCCCTGCTCGCCGTAGCCCCAGTCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E304226" ref_strand="+" ref_description="SGN-E304226 [cLEX-6-L15]">
      <seq>tcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9367" stop="4961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8940" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="207" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="287" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="354" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="426" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="636" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E304226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG</genome_strand>
        <mrna_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E346475" ref_strand="+" ref_description="SGN-E346475 [cTOF-23-P9]">
      <seq>ttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9343" stop="4965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9043" g_stop="8940" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="183" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="263" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="330" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="402" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5265" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="608" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E346475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9043" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATG</genome_strand>
        <mrna_strand>TTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E346128" ref_strand="+" ref_description="SGN-E346128 [cTOF-34-K23]">
      <seq>ttcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgggggagaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9353" stop="5004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9053" g_stop="8940" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="193" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="273" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="340" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="412" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5304" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="579" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E346128" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9053" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTA</genome_strand>
        <mrna_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGGGGGAGAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E246119" ref_strand="+" ref_description="SGN-E246119 [cLEF-40-E20]">
      <seq>tcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9281" stop="5050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8981" g_stop="8940" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="121" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="201" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="268" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="340" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5350" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="461" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E246119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8981" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGG</genome_strand>
        <mrna_strand>TCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E326371" ref_strand="+" ref_description="SGN-E326371 [cTOC-14-C7]">
      <seq>ttcattaaccttatctgtcttcactccggcgaacggcgatgtctcacgtcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaagctttagccggtacctgcactgttaggtagaaggatgcaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgagcgtgatcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9353" stop="5079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9053" g_stop="8940" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="193" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8183" g_stop="8145" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="232" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198">
            <donor d_prob="0.267" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="312" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="379" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="451" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5470" g_stop="5379" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="543" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E326371" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9053" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="8183" e_stop="8145"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACC</genome_strand>
        <mrna_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACGTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG......................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGAGCGTGATCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E293704" ref_strand="+" ref_description="SGN-E293704 [cLET-21-H2]">
      <seq>ggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9319" stop="5079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8940" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="239" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="378" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5379" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="470" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E293704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACC</genome_strand>
        <mrna_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E308152" ref_strand="+" ref_description="SGN-E308152 [cLEY-14-G14]">
      <seq>ttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaagtatgagcgtgatcagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9334" stop="5080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9034" g_stop="8940" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="174" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="254" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="321" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="393" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5380" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="484" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E308152" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9034" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTAC</genome_strand>
        <mrna_strand>TTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAAGTATGAGCGTGATCAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E302411" ref_strand="+" ref_description="SGN-E302411 [cLEW-27-N10]">
      <seq>tcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9367" stop="5102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8940" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="207" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="287" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="354" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="426" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5402" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="495" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E302411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGG</genome_strand>
        <mrna_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E283216" ref_strand="+" ref_description="SGN-E283216 [cLER-17-F22]">
      <seq>ggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9319" stop="5108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8940" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="239" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="378" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5408" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="441" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E283216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAG</genome_strand>
        <mrna_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E279641" ref_strand="+" ref_description="SGN-E279641 [cLER-5-A2]">
      <seq>ggcgatgtctcacttcggtagatcatgcccaccggacatcaaagacacctactctctgctcgttctcaacgttactttacgtaccactgctgacgacttgtttcctctatttgataagtatggaaaagtagtcgatgcctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcatgatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgcgatcatagggacacggattctagaatgagaagccgaagtagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9319" stop="5120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8940" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="239" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="378" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5420" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="429" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E279641" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAG</genome_strand>
        <mrna_strand>GGCGATGTCTCACTTCGGTAGATCATGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTAC................................................................................................GTACCACTGCTGACGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGCCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCATGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCGATCATAGGGACACGGATTCTAGAATGAGAAGCCGAAGTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E289019" ref_strand="+" ref_description="SGN-E289019 [cLES-17-F12]">
      <seq>aaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9365" stop="5143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9065" g_stop="8940" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="205" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="285" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="352" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5443" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="452" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E289019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9065" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCT</genome_strand>
        <mrna_strand>AAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E338041" ref_strand="+" ref_description="SGN-E338041 [cTOE-14-D24]">
      <seq>gatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9316" stop="5144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9016" g_stop="8940" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="156" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="236" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="303" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="375" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5444" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="402" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E338041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9016" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTC</genome_strand>
        <mrna_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E259121" ref_strand="+" ref_description="SGN-E259121 [cLEG-41-D6]">
      <seq>tcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9367" stop="7200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8940" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="207" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="287" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="354" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7500" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="372" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E259121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTT</genome_strand>
        <mrna_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E325294" ref_strand="+" ref_description="SGN-E325294 [cTOC-1-H5]">
      <seq>attaaccttatctgtcttcactccggcgaacggcgatgtctcacttacgttgatcaggcccaccggacatcaaagacacctactctctgctcggtctcaacgctacttttccttccactgctgatgacttgtttcctatatttgataactatagaaaagtattcgatgtctttatccctacagaccgaaagactggagattctaagggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggataagcttgatggaagagtatgggatggtctgcaaatcatggctcgatttgcgaagaacggcacctaatgctgagagaattgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9350" stop="7427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9050" g_stop="8940" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="190" r_length="79" r_score="0.899"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="270" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="338" r_length="68" r_score="0.851"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.88"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7512" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="344" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E325294" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9050" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGC-CCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAA</genome_strand>
        <mrna_strand>ATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTACGTTGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGGTCTCAACGCTACTTTTC................................................................................................CTTCCACTGCTGATGACTTGTTTCCTATATTTGATAACTATAGAAAAGTATTCGATGTCTTTATCCCTACAGACCGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAAGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGATAAGCTTGATG.....................................................................GAAGAGTATGGGATGGTCTGCAAATCATGGCTCGATTTGCGAAGAACGGCACCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E370020" ref_strand="+" ref_description="SGN-E370020 [TUS-26-D16]">
      <seq>caaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagcatcacgatgaggctcaaaaagcatgggaaaagcttgatggaagagttgaactatggtctgtacatcatggttcgattcgcgaagtgcggccctaatgctgatagaattgacacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9366" stop="7542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8940" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="206" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="286" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="354" r_length="68" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E370020" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTA-GATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT</genome_strand>
        <mrna_strand>CAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGCATCACGATGAGGCTCAAAAAGCATGGGAAAAGCTTGATG.....................................................................GAAGAGTTGAACTATGGTCTGTACATCATGGTTCGATTCGCGAAGTGCGGCCCTAATGCTGATAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E203362" ref_strand="-" ref_description="SGN-E203362 [cLEB-3-P3]">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="16729" stop="26655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25867" g_stop="26354" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25867" e_stop="26354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAGCCAATGACAAAGAAGTTTAGGAAAGTGACTTGCCTATACAAAAGGCACTTTCCTAAACACTTTTCTTTAGTTTTTGCAACTTGACAAACACTTTTCAAGAACTCTTGCAAAGACTAACACAAAGCATATGCAGAATCATTCCTAGGACAACAGCAACATCTGAAGCCTTTCGTCTAGTTGTCTAGGAATTTATTCTCTTGTTCTCAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGAGTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E736175" ref_strand="+" ref_description="SGN-E736175 [LC04CE12]">
      <seq>cgcttcttttaattattagcaaatgatgatagttcccacaatttttaatttccttcagtgtattacattcttatatcttttcgcggttacatttgctaccactgaggaagcaactgctcttctaaaatggaaagcaactttccaaaaccagaacaattctttattggcttcgtggacgctaagtggacctgctggtaccaatagcattggagcggcgagttctaatgcatgtgaggactggtatggagttacatgttctaacggtagggtatacatgttgaatatgacaaatgctggtatcaatggcacactgtatgattttccattttcatcactcccttttcttggttatcttgatcttagcatcaacaacttctctggcactatcccacctgaaataggaaagctcactaatcttggctatcttgacttgtccttcaatcagatttcgggcataatcccaccacaaatcggctcattaacaaagcttgagaccctccacatctttaacagccaattatatggttccattccggaggaaataggtcacctaaggtctttgactgagctagctttgaattctaactctcttagtggttcaattcctgcttcattggggactttggacaaattgtcttatttgcatctgtatgagaaccatctttctggttccattccagcagaaatagggaaacttgtcaatctccttcaactttttcttgattcaaacaagttaactggtcatattcctccaaaaattgaaaaacttgtcaatctccttcaactttttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="26735" stop="28126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27031" g_stop="27826" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E736175" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27031" e_stop="27826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGAT</genome_strand>
        <mrna_strand>CGCTTCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAAAAATTGAAAAACTTGTCAATCTCCTTCAACTTTTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E343937" ref_strand="+" ref_description="SGN-E343937 [cTOF-12-C15]">
      <seq>cttgagcaactgctccagtttcaaaagggttcgcttcaataacaacagctttactgggaatttctctgaaagcttttggcatccatcccgagctgatgttcattgatttgagcgacaatgattttcaatggcgaactcagcagcaactgggggaaatacaagaatttgactactttttggatagccagaaataacattagcggtagcataccaccagagattggaaacatcaaaggtcttttgggacttgatctttcaacaaatcatttggttgggcaaataccagaggaatttggaaaattaacctctctggttgagctctcattgaaaaacaaccaaatttctggcaatatacctcaggaacttgggtcactgacaaagttagagntcccttgatctatcagacaatagattgaatgggtcgatcccaaagtttataggagattaccagcacctgattcacttgaacctgagcaacaacaaatttggccaaaaaattccaaaggagaatagggggtataattcaactttaatgtacttgatttgagccataatctnntctggttggggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="27775" stop="37496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28075" g_stop="28640" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E343937" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28075" e_stop="28640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTATCTG-AAGCTTTTGGCATCCATCCCGAGCTGAAGTTCATTGATTTGAGCGACAATGATTTTC-ATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAGCAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAATTTAGA-CTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAG-ATA-GGGGTATAACTCATC-TTAATGTACTTGATTTGAGCCATAATCT--TCTGGTTGGAGAAAT</genome_strand>
        <mrna_strand>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTCTCTGAAAGCTTTTGGCATCCATCCCGAGCTGATGTTCATTGATTTGAGCGACAATGATTTTCAATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAACAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAAGTTAGAGNTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAAAGTTTATAGGAGATTACCAGCACCTGATTCACTTGAACCTGAGCAACAACAAATTTGGCCAAAAAATTCCAAAGGAGAATAGGGGGTATAATTCAACTTTAATGTACTTGATTTGAGCCATAATCTNNTCTGGTTGGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E542836" ref_strand="+" ref_description="SGN-E542836 [TUS-64-F12]">
      <seq>ttttttttttttcaaaccttctatagaggtgagttgtgacatatatccaacccataatgattttatcacatctggacccattctcttatagaatggtcgagcattcacgatactcattacaagtcacattctcttcaaagattggactaattattcatatgtactttataaatttgcattataagcacattgtcatgactttaaaattcatcatatttccatgacacacctcaacatcactttgaaagataaagtgtaccatcactttatcttcttatatcatgatagaggatttataaacttgtcaagttattgggttgacaacattcacaagtctaatgacttttcataccattttcataataaaaattgtcttcacattttgaaggactatttgaagaactcatattgttattccttttatcattaccacaatgatgactattataattctgtccttccacgcctttattcatatcattaattatttgtcatctttcagactaatcattcactgctaccacattcatatgattgaatggagcaagtcaacaggcggatttcagagttatcacatgttgctaccacattcttttcaaggaatggagcaaattcaatatgatgaattttcagacattttcatcaaaaatataatgattttcttagtcatcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="30880" stop="32154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31180" g_stop="31854" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E542836" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31180" e_stop="31854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATTTTTCTCAAACCTTCCATAGAGGTGAGTTGTGGCATATATCCAACATATAATGATTTTATCACATCTGGACCAATTCTCTTATAGAATGGTCGAGTATTCACGATACTCATCACAAGTCACATTGTCTTCAAGGAATGAACTAATTATTTATATGTACTTCATAAATTTGCATTATAAGCAAATTGTCATGGCTTTAAAATTCATCATATTTCCATAACACACCTCAACATCACTTTGAAAGATCAAGTGTACCATTACTTTATCTTCTTGTATCATGATAGAGGATTTATAAACTTGTCAAATTATTGGGTTGACAACATTCACAAGTCTAATGACATTTCATACCATTTGGATAATAAAAATTGCCTTCACATTTTGAAGGATTATTTGAAGAACTTATAGTGTTCTTCCTTCTATCATTACCACAATGATGACTATTATAATTTTGTCCCTCCACGCCCTTATTCATATAATTAATTATTTGTCATCTTTCAGACTAATCATTCACTGCTACCACATTCATATGATTGAATGGAGCAAGTCAACAGACGGATTTCAGAGTTATCACATGTTGCTACCACATTCTTTTAAAGGAATGGAGCAAATTCAATCTGATGAATTTCAAGATA-TTTCATCAAAAATATATTATTTTTCTTAGTCATTATTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTCAAACCTTCTATAGAGGTGAGTTGTGACATATATCCAACCCATAATGATTTTATCACATCTGGACCCATTCTCTTATAGAATGGTCGAGCATTCACGATACTCATTACAAGTCACATTCTCTTCAAAGATTGGACTAATTATTCATATGTACTTTATAAATTTGCATTATAAGCACATTGTCATGACTTTAAAATTCATCATATTTCCATGACACACCTCAACATCACTTTGAAAGATAAAGTGTACCATCACTTTATCTTCTTATATCATGATAGAGGATTTATAAACTTGTCAAGTTATTGGGTTGACAACATTCACAAGTCTAATGACTTTTCATACCATTTTCATAATAAAAATTGTCTTCACATTTTGAAGGACTATTTGAAGAACTCATATTGTTATTCCTTTTATCATTACCACAATGATGACTATTATAATTCTGTCCTTCCACGCCTTTATTCATATCATTAATTATTTGTCATCTTTCAGACTAATCATTCACTGCTACCACATTCATATGATTGAATGGAGCAAGTCAACAGGCGGATTTCAGAGTTATCACATGTTGCTACCACATTCTTTTCAAGGAATGGAGCAAATTCAATATGATGAATTTTCAGACATTTTCATCAAAAATATAATGATTTTCTTAGTCATCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E354965" ref_strand="+" ref_description="SGN-E354965 [cTOS-19-M24]">
      <seq>gataagacgatagattcaagttctatctcaccaaaagggtaagacatcaattagagttttgatacaccgtgattgggttcaagttccatagaattatggcgtaacacgccttacatgggtaagacattgagtttgatccaatgcataaaatgatgactaagaaaaataatatatttttgatgaaatgtctttaaattcatcatattgaatttgctccatttcttgaaaagaatatggtagcaacatgtgataactctgaaatccacctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtttgaaagatgacaaataattaatgatatagaataagggagtggagggaaagaattataatagtcatcattgtggtaatgataaaaggaagaacactatgagttcttcaaatagtccttcaaaatgtgaaggcaacttttattatcaaaatggtatgaaaggttattagacttgtcaatgttgtcaaccccataatttgacaagtttataaatcctctatcatgacacaagaagataaagtgatggtacacttcatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagccatgacaatgtgcttataatgcaaatttatgaagtacatataaataattagttcattccttgaagagaatgtgacttgtgatgagtatcgtgaatgctcgaccattctataaaagaatgggtccaaatgtgataaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="32312" stop="30935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32012" g_stop="31235" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E354965" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32012" e_stop="31235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACTGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTCTAGCCAATGCACCATAGCGATGATAAAATAATGACTAAGAAAAATAATATATTTTTGATGAAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATAT-GAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCATTCTATAAGAGAATTGGTCCAGATGTGATAAAATCATT</genome_strand>
        <mrna_strand>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTT-T-G---AT-C-CAAT-GC----ATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E357376" ref_strand="+" ref_description="SGN-E357376 [cTOS-23-J7]">
      <seq>gtgattgggttcaagaccatagaattatggcgtaacacgccttatatgggtaagacattgagtttgagccaatgcaccatagcgatgataaaatgatgactaagaaaatcattatatttttgatgaaatgtcttgaaattcatcatattgaatttgctccattccttgaaaagaatgtggtagcaacatgtgataactctgaaatccgcctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtctgaaagatgaccaataattaatgatatgaataaaggcgtggaaggacagaattataatagtcatcattgtggtaatgataaaaggaataacaatatgagttctttcaatagtcctttcaaatgtgaagacaatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaanttttaagtcatgacnatgtgctttatatnngcaattataaagtacatatgaaatattagtccnnatcttgaagagaatgtgactttgtatgagtatcgtgaatgctcgaccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="32227" stop="31059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31944" g_stop="31273" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E357376" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31944" e_stop="31273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTCTAGCCAATGCACCATAGCGATGATAAAATAATGACTAAGAAAAATAATATATTTTTGATGAAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATATGAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCA</genome_strand>
        <mrna_strand>GTGATTGGGTTCAAG-ACCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTTGAGCCAATGCACCATAGCGATGATAAAATGATGACTAAGAAAATCATTATATTTTTGATGAAATGTCTTGAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGCCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACCAATAATTAATGATATGAATAAAGGCGTGGAAGGACAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAATAACAATATGAGTTCTTTCAATAGTCCTTTCAAATGTGAAGACAATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAANTTTTAAGTCATGACNATGTGCTTTATATNNGCAATTATAAAGTACATATGAAATATTAGTCCNNATCTTGAAGAGAATGTGACTTTGTATGAGTATCGTGAATGCTCGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E340364" ref_strand="+" ref_description="SGN-E340364 [cTOF-2-N11]">
      <seq>tcatcctcatcactgtacttcctattctgggagcattagtgctgctttgtgctttcgctggttctctctttatgtgtgaccaaagaagaagagttggagacgttgaaagaagggatggtgatggttggctttcgatatccatgttagatgggaaggcattgtacagggacatcttaaatgccacagaagagttcgatgcaaaattttgcattgggcaaggaggtcagggaagtgtttacaaggtaaaccttccattattaggagatatagctgtgaagagacttcattcttcatttcagaatacacatcccaaaagcttcataaatgaagtaagggcattgactgggattaagcaccggaacattgtgagcctctacggctattgttcgaaagcacaacactcactcttggtttacgagtatgtggagaggggggagtttgtctagtgttttaagcaatgaagttgagtctaagaaattggattggcttaaaagggtgaatatcatcaagggtgttgcttttgctttatcttacatgcaccaggattgttcaccacccattgttcatcgagacatacgtagcagtaatgttttgcttgattctgagtatgaagctcgtgttgcagactttggaatagcaaagattctcaatccagactcgtccaattgcaccgcgcttgcaggcacatatggttatgtcgcacctgagcttgcatatacaatgaaagttacacaaatgtgtgatgtgtatagctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="37189" stop="38646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37489" g_stop="38193" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38194" i_stop="38294" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38295" g_stop="38346" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="758" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E340364" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37489" e_stop="38193"/>
          <exon e_start="38295" e_stop="38346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGA-GGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTGGTAAGTTTTAAATAGTTGATGAACTATATCCAAGCACTCCATTGTTTTCTTAATCTCATTTGATTGTTAGTATTGTTGTTGAAAATTGTATTATCATTCAGAGCTTGCATATACAATGAAGGTTACACAAATGTGTGATGTGTATAGCTTTGG</genome_strand>
        <mrna_strand>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGAGGGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTG.....................................................................................................AGCTTGCATATACAATGAAAGTTACACAAATGTGTGATGTGTATAGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E736245" ref_strand="+" ref_description="SGN-E736245 [LC04DF07]">
      <seq>cgcttttaattattagcaaatgatgatagttcccacaatttttaatttccttcagtgtgttacattcttatatcttttcgcggttacatttgctaccactgaggaagcaactgctcttctaaaatggaaagcatctttccaaaaccagaacaattctttattggcttcgtggacgctaagtggacctgctggtaccaatagcattggagcggcgagttctaatgcatgcgaggactggtatggagttacatgttctaacggtagggtatacatgttgaatatgacaaatgctggtatcaatggcacactgtatgattttccattttcatcactcccttttcttggttatcttgatcttagcatcaacaacttctctggcactatcccacctgaaataggaaagctcactaatcttggctatcttgacttgtccttcaatcagatttcgggcataatcccaccacaaatcggctcattaacaaagcttgagaccctccacatctttaacagccaattatatggttccattccggaggaaataggtcacctaaggtctttgactgagctagctttgaattctaactctcttagtggttcaattcctgcttcattggggactttggacaaattgtcttatttgcatctgtatgagaaccatctttctggttccattccagcagaaatagggaaacttgtcaatctccttcaactttttcttgattcaaacaagttaactggtcatattcctccaaaaattggaaaacttgccaatctccttcaacttttttctgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="43108" stop="44501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43406" g_stop="44201" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E736245" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43406" e_stop="44201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTGTTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCATCTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGCGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCA</genome_strand>
        <mrna_strand>CGCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTGTTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCATCTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGCGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAAAAATTGGAAAACTTGCCAATCTCCTTCAACTTTTTTCTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E720629" ref_strand="+" ref_description="SGN-E720629 [FC11BD12]">
      <seq>aatcggccgaattgactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52117" g_stop="52284" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="312" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="531" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="744" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53978" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="822" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E720629" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52117" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</genome_strand>
        <mrna_strand>AAT-CG-GCCGAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E717848" ref_strand="+" ref_description="SGN-E717848 [FC02DF11]">
      <seq>aatcggccgaattggactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52117" g_stop="52284" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="313" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="532" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="745" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53949" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="794" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E717848" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52117" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAA</genome_strand>
        <mrna_strand>AAT-CGGCCGAATTGGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E721384" ref_strand="+" ref_description="SGN-E721384 [FC13CH08]">
      <seq>gggggatccgacggactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcaaaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51832" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52119" g_stop="52284" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="312" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="531" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="744" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53905" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="749" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E721384" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52119" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATT</genome_strand>
        <mrna_strand>GGGGGATCCGACGGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAAAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E720242" ref_strand="+" ref_description="SGN-E720242 [FC10AH10]">
      <seq>tcggccgaattggactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccaaatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52120" g_stop="52284" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="311" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="530" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="743" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53932" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="775" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E720242" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52120" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACT</genome_strand>
        <mrna_strand>TCGGCCGAATTGGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAAATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E725142" ref_strand="+" ref_description="SGN-E725142 [FC26AG12]">
      <seq>gactccctactcatccccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51832" stop="54315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52132" g_stop="52284" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="299" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="518" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="731" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54015" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="846" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E725142" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52132" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAA</genome_strand>
        <mrna_strand>GACTCCCTACTCATCCCCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E699736" ref_strand="+" ref_description="SGN-E699736 [FA11AC09]">
      <seq>tcggcacgaggcatcaccctgcattttcgagtcttgacgatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttacagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattataattttagccacaaggagcagagcgcaactcaatgctactttgaatcattacaaagatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51836" stop="54073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52132" g_stop="52284" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="299" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="518" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53773" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="714" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E699736" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52132" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</genome_strand>
        <mrna_strand>TCGGCACGAGGCATCACCCTGCATTTTCGAGTCTTGACGATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTACAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTATAATTTTAGCCACAAGGAGCAGAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E724633" ref_strand="+" ref_description="SGN-E724633 [FC24CH01]">
      <seq>gattggcggccaatcggccgaattggactccctactcaccttaaagcattttcgagtcttgacaatcatatcctcctcccgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtgaaggttcttcgtgatgcaattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52135" g_stop="52284" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="178" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="324" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="543" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="756" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54006" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="862" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E724633" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52135" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACA</genome_strand>
        <mrna_strand>TCCCTACTCACCTTAAAGCATTTTCGAGTCTTGACAATCATATCCTCCTCCCGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGAAGGTTCTTCGTGATGCAATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E721245" ref_strand="+" ref_description="SGN-E721245 [FC13AH02]">
      <seq>tagggcgattggcggccaatcggccgaattggactccctactcaccactttgaattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52135" g_stop="52284" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="330" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="549" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="762" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53978" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="840" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E721245" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52135" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</genome_strand>
        <mrna_strand>TCCCTACTCACCACTTTGAATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E718545" ref_strand="+" ref_description="SGN-E718545 [FC04DH10]">
      <seq>gggcgattggcggccaatcggccgaattggactccctactcatccccttgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52135" g_stop="52284" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="182" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="328" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="547" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="760" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53976" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="836" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E718545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52135" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATT</genome_strand>
        <mrna_strand>TCCCTACTCATCCCCTTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E337291" ref_strand="+" ref_description="SGN-E337291 [cTOE-7-B6]">
      <seq>tcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51842" stop="53420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52142" g_stop="52284" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="289" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53120" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="396" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E337291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52142" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGC</genome_strand>
        <mrna_strand>TCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E701362" ref_strand="+" ref_description="SGN-E701362 [FA15DA10]">
      <seq>caccatcctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttctttcgtgatgcattaacaggagaggaacagaggaagatcatctaccccgagttatcgctacaagggctgaggtcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="288" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="507" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="720" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54067" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="887" r_length="167" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E701362" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTC-TTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCT</genome_strand>
        <mrna_strand>CACCATCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTTCGTGATGC-ATTAACAGGAGAGGAACAGAGGAAGATCATCTACCCCGAGTTATCGCTACAAGGGCTGAGGTCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E302520" ref_strand="+" ref_description="SGN-E302520 [cLEX-1-E5]">
      <seq>atcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="54033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="287" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="506" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53733" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="662" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E302520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCG</genome_strand>
        <mrna_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E341309" ref_strand="+" ref_description="SGN-E341309 [cTOE-22-P1]">
      <seq>atcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="53933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="287" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="506" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53633" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="562" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E341309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCG</genome_strand>
        <mrna_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E249244" ref_strand="+" ref_description="SGN-E249244 [cLEF-50-N13]">
      <seq>atcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="53915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="287" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="506" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53615" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="544" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E249244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGG</genome_strand>
        <mrna_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E710606" ref_strand="+" ref_description="SGN-E710606 [FA55DG07]">
      <seq>caccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagacgaccctggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51846" stop="54303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52146" g_stop="52284" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="717" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54003" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="820" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E710606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52146" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTA</genome_strand>
        <mrna_strand>CACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGACGACCCTGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E299859" ref_strand="+" ref_description="SGN-E299859 [cLEW-1-G22]">
      <seq>ccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51848" stop="53920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52148" g_stop="52284" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="283" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="502" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53620" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="545" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E299859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52148" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</genome_strand>
        <mrna_strand>CCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E709577" ref_strand="+" ref_description="SGN-E709577 [FA52BH10]">
      <seq>cccctattttcgagtcttgacaatcatatcctcctcctgcccacccatagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtccattagaattttagccaccaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51854" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52284" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="282" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="501" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="715" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53913" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="728" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E709577" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGT-CATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATG</genome_strand>
        <mrna_strand>CCCCTATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACCCATAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCCATTAGAATTTTAGCCACCAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E302483" ref_strand="+" ref_description="SGN-E302483 [cLEW-27-L22]">
      <seq>cctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51849" stop="53918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52284" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="282" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="501" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53618" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="542" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E302483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGA</genome_strand>
        <mrna_strand>CCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E332214" ref_strand="+" ref_description="SGN-E332214 [cTOD-17-E15]">
      <seq>ctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgaggtcattttcataattacagaataatttttgaattcttagttgattatttgagtttctgagttactctgtgtgatcaaaggcagatctatgatgtaaaatatatatacacattatccgtatagtaaaaccatgctaattctgaacccgatactctagatcatggattcaacttcgattttatcagagacagatctatgaaaaatatgtattagtatgtcaaaatatgaaaatgtgtacatatataataaaatcatacgtgttttgaattcactgactcgagatcctggatttgccttttgactttttgatcgtatgtgaactttgatcagaaatgataaccaacacttgtacttgtgttttctcttgaatgtttctcgcagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="53064" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="712" r_length="577" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E332214" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="53064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGT-AAA-ATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E331976" ref_strand="+" ref_description="SGN-E331976 [cTOD-16-D19]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaaatttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="54073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="280" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53773" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="695" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E331976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAAATTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E299569" ref_strand="+" ref_description="SGN-E299569 [cLEW-20-O2]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="280" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="587" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E299569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E304702" ref_strand="+" ref_description="SGN-E304702 [cLEX-11-D19]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="280" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="587" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E304702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E300358" ref_strand="+" ref_description="SGN-E300358 [cLEW-17-P1]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacgacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="281" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="500" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E300358" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCAC-ACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACGACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E702196" ref_strand="+" ref_description="SGN-E702196 [FA18AC07]">
      <seq>gcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgncattaacaggagaggaacagaggaagatcatctaacccgagttatcgctancagggctgaggtcgatctgaagactatcgctaacgagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="279" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="498" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="711" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54090" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="901" r_length="190" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E702196" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACC</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGNCATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTANCAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E303135" ref_strand="+" ref_description="SGN-E303135 [cLEX-5-C14]">
      <seq>gcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="279" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="498" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53667" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="588" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E303135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E322690" ref_strand="+" ref_description="SGN-E322690 [cTOB-26-H19]">
      <seq>cattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="585" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E322690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E310490" ref_strand="+" ref_description="SGN-E310490 [cTOA-9-G1]">
      <seq>cattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53620" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="540" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E310490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E303087" ref_strand="+" ref_description="SGN-E303087 [cLEW-26-D18]">
      <seq>cattttcgagtcttgacaatcatatcctgctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccacatctcctaaagaactggttttggcaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53159" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="424" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E303087" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGA</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTGACAATCATATCCTGCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCACATCTCCTAAAGAACTGGTTTTGGCAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E301031" ref_strand="+" ref_description="SGN-E301031 [cLEW-22-O23]">
      <seq>attttcgagtcttgacaatcatatcctgctcctggccacacagagaagaagaaaaatggccagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagcttctaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51854" stop="53451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52154" g_stop="52284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53151" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="415" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E301031" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52154" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTG</genome_strand>
        <mrna_strand>ATTTTCGAGTCTTGACAATCATATCCTGCTCCTGGCCACACAGAGAAGAAGAAAAATGGCCAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTTCTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E315026" ref_strand="+" ref_description="SGN-E315026 [cTOB-4-I4]">
      <seq>ttttcgagtcttgacaatcatatcctgctcctgcccacacagagaagaagaaaaatggctagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaacgaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctctaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51855" stop="53919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52155" g_stop="52284" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53619" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="537" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E315026" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52155" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGAT</genome_strand>
        <mrna_strand>TTTTCGAGTCTTGACAATCATATCCTGCTCCTGCCCACACAGAGAAGAAGAAAAATGGCTAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAACGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCTAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E338731" ref_strand="+" ref_description="SGN-E338731 [cTOE-21-O17]">
      <seq>ttttcgagtcttgacaatcatttcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51855" stop="53354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52155" g_stop="52284" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53054" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="317" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E338731" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52155" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGA</genome_strand>
        <mrna_strand>TTTTCGAGTCTTGACAATCATTTCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E328455" ref_strand="+" ref_description="SGN-E328455 [cTOC-21-H24]">
      <seq>tcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51858" stop="54073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52158" g_stop="52284" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="273" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="492" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53773" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="688" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E328455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52158" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</genome_strand>
        <mrna_strand>TCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E708983" ref_strand="+" ref_description="SGN-E708983 [FA42BD01]">
      <seq>ccggtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51859" stop="54334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52159" g_stop="52284" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="272" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="491" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="704" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54034" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="838" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E708983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52159" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAAC</genome_strand>
        <mrna_strand>CCGGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E704126" ref_strand="+" ref_description="SGN-E704126 [FA23BF12]">
      <seq>cgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctanagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctactccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51859" stop="54318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52159" g_stop="52284" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="272" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="491" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="704" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54018" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="822" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E704126" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52159" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAG</genome_strand>
        <mrna_strand>CGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTANAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACTCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E703542" ref_strand="+" ref_description="SGN-E703542 [FA21DB11]">
      <seq>gtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctanagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatggcattaacaggagaggaacagaggaagatcatctaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51862" stop="54336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52162" g_stop="52284" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="269" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="488" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="701" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54036" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="837" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E703542" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52162" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCC</genome_strand>
        <mrna_strand>GTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTANAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGGCATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E284595" ref_strand="+" ref_description="SGN-E284595 [cLES-3-A14]">
      <seq>gatcatatactcctcctgcccacacagagaagaagaaaaatggcatgtcttacagatccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctattaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51871" stop="53909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52170" g_stop="52284" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="261" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="480" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53609" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="512" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E284595" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52170" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATA</genome_strand>
        <mrna_strand>GATCATATACTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCATGTCTTACAGATCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTATTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E698924" ref_strand="+" ref_description="SGN-E698924 [FA08AB04]">
      <seq>atatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattacaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51874" stop="54312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52174" g_stop="52284" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="257" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="476" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="689" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54012" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="801" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E698924" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52174" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAG</genome_strand>
        <mrna_strand>ATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTACAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E707708" ref_strand="+" ref_description="SGN-E707708 [FA33DA10]">
      <seq>cgataagaggaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatcntacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51896" stop="54385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52195" g_stop="52284" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="236" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="455" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="668" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54085" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="853" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E707708" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52195" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGA</genome_strand>
        <mrna_strand>CGATAAGAGGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCNTACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E747605" ref_strand="+" ref_description="SGN-E747605 [GI|3378207]">
      <seq>atggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaataagaagcggattggctcacttctgtttataatgaccagataatatgccattctccatatatttcagagttggcatgtgtttgatgattgagagtggtctgttcacatgagctttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51909" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52209" g_stop="52284" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="222" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="441" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="654" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54392" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="1140" r_length="486" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1141" polyA_stop="1160"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E747605" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1146</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52209" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>ATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTG-TTTATAATGACCAG-AT-AATATGCCATTCT-CCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGAGTGGTCTG-TTCACATGAGC-TTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E327162" ref_strand="+" ref_description="SGN-E327162 [cTOC-18-H1]">
      <seq>ttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51919" stop="53404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52219" g_stop="52284" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="212" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53105" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="304" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E327162" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52219" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGT</genome_strand>
        <mrna_strand>TTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E707689" ref_strand="+" ref_description="SGN-E707689 [FA33CH02]">
      <seq>ccgctgaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51928" stop="54459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52228" g_stop="52284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="203" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="422" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="635" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54159" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="894" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E707689" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52228" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGC</genome_strand>
        <mrna_strand>CCGCTGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E310125" ref_strand="+" ref_description="SGN-E310125 [cLEZ-8-A9]">
      <seq>tcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcacattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51942" stop="53364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52242" g_stop="52284" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="189" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53064" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="240" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E310125" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52242" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</genome_strand>
        <mrna_strand>TCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCACATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E291421" ref_strand="+" ref_description="SGN-E291421 [cLET-2-P22]">
      <seq>aattttggctcatagaaatgcgggtcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgcgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagctgttggtacctcttgtgagctcctaccgatatgggggagatgaggtggagttgcgacttgctaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52217" stop="53946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52517" g_stop="52631" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="334" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53646" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="403" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E291421" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52517" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCA</genome_strand>
        <mrna_strand>AATTTTGGCTCATAGAAATGCGGGTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGCGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTGTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGAGTTGCGACTTGCTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E317700" ref_strand="+" ref_description="SGN-E317700 [cTOB-8-B11]">
      <seq>cttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaagaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacggtgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52293" stop="53932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52593" g_stop="52631" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="258" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53632" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="313" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E317700" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52593" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGC</genome_strand>
        <mrna_strand>CTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAAGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGGTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E239875" ref_strand="+" ref_description="SGN-E239875 [cLED-29-J2]">
      <seq>aagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52297" stop="53512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52597" g_stop="52631" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53212" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="234" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E239875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52597" e_stop="52631"/>
          <exon e_start="53014" e_stop="53212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACA</genome_strand>
        <mrna_strand>AAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E268662" ref_strand="+" ref_description="SGN-E268662 [cLEM-9-O13]">
      <seq>gagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52309" stop="54234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52609" g_stop="52631" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="242" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="455" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="53934" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="489" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E268662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52609" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGT</genome_strand>
        <mrna_strand>GAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E303283" ref_strand="+" ref_description="SGN-E303283 [cLEX-5-L14]">
      <seq>cttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52862" stop="54423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53162" g_stop="53232" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="284" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54123" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="507" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E303283" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53162" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCA</genome_strand>
        <mrna_strand>CTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E302521" ref_strand="-" ref_description="SGN-E302521 [cLEX-1-E5]">
      <seq>gtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53293" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53593" g_stop="53790" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54368" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="663" r_length="465" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E302521" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302521" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53593" e_stop="53790"/>
          <exon e_start="53901" e_stop="54368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTT</genome_strand>
        <mrna_strand>GTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E542189" ref_strand="-" ref_description="SGN-E542189 [TUS-63-F23]">
      <seq>gatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatttctctaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53306" stop="54674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53606" g_stop="53790" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54384" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="665" r_length="480" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E542189" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53606" e_stop="53790"/>
          <exon e_start="53901" e_stop="54384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCAT</genome_strand>
        <mrna_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAAT-TTCTCTAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E542191" ref_strand="+" ref_description="SGN-E542191 [TUS-63-F23]">
      <seq>gatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53306" stop="54674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53606" g_stop="53790" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54373" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="655" r_length="470" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="666"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E542191" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53606" e_stop="53790"/>
          <exon e_start="53901" e_stop="54373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTA</genome_strand>
        <mrna_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E300069" ref_strand="+" ref_description="SGN-E300069 [cLEW-11-O19]">
      <seq>atatgggggagatgatgtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattaccaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagccctatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53307" stop="54538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53607" g_stop="53790" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54238" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="520" r_length="335" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E300069" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53607" e_stop="53790"/>
          <exon e_start="53901" e_stop="54238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTA-CAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATG</genome_strand>
        <mrna_strand>ATATGGGGGAGATGATGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACCAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCCCTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E354142" ref_strand="+" ref_description="SGN-E354142 [cTOS-16-J10]">
      <seq>cagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53345" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53645" g_stop="53790" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54399" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="642" r_length="496" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E354142" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53645" e_stop="53790"/>
          <exon e_start="53901" e_stop="54399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCT</genome_strand>
        <mrna_strand>CAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E354173" ref_strand="+" ref_description="SGN-E354173 [cTOS-16-E5]">
      <seq>agaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattcttccatatatttcaaagttggcatgtggttgatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53346" stop="54582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53646" g_stop="53790" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54282" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="524" r_length="379" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E354173" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53646" e_stop="53790"/>
          <exon e_start="53901" e_stop="54282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTG</genome_strand>
        <mrna_strand>AGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTTCCATATATTTCAAAGTTGGCATGTGGTTGATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E287994" ref_strand="-" ref_description="SGN-E287994 [cLES-7-M4]">
      <seq>aaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53421" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53721" g_stop="53790" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54363" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="533" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="549"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E287994" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287994" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53721" e_stop="53790"/>
          <exon e_start="53901" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</genome_strand>
        <mrna_strand>AAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E715647" ref_strand="+" ref_description="SGN-E715647 [FB14DE08]">
      <seq>gctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgtaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53443" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53743" g_stop="53790" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54363" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="511" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E715647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53743" e_stop="53790"/>
          <exon e_start="53901" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</genome_strand>
        <mrna_strand>GCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGTAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E326549" ref_strand="+" ref_description="SGN-E326549 [cTOC-17-H15]">
      <seq>tgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactnnnnannannaanannnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53632" stop="54689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53932" g_stop="54409" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="482"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E326549" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53932" e_stop="54409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</genome_strand>
        <mrna_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACT--NNNNANNANNAA-NANNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E326501" ref_strand="+" ref_description="SGN-E326501 [cTOC-17-K3]">
      <seq>tgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53632" stop="54688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53932" g_stop="54388" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E326501" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53932" e_stop="54388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCAC</genome_strand>
        <mrna_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E326609" ref_strand="+" ref_description="SGN-E326609 [cTOC-17-E17]">
      <seq>tgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgcatatgaatctttgtgctgtctaacaatgttctctaatgatttgcntccngctaatccaacaattatggttgaacattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53632" stop="54686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53932" g_stop="54382" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E326609" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53932" e_stop="54382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGC</genome_strand>
        <mrna_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGCATATGAATCTTTGTGCTGTCTAACAATGTTCTCTAATGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E237084" ref_strand="-" ref_description="SGN-E237084 [cLEL-7-C16]">
      <seq>cataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaaccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactacaataatcttcaactaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53645" stop="54706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53945" g_stop="54409" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="477"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E237084" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237084" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53945" e_stop="54409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</genome_strand>
        <mrna_strand>CATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAA-CCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-e7jLMw/sgn_ests_tomato" ref_id="SGN-E236886" ref_strand="-" ref_description="SGN-E236886 [cLEL-7-C6]">
      <seq>cttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactacaataatcttcaactaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-HCuzO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53688" stop="54706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53988" g_stop="54409" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="435"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E236886" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236886" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53988" e_stop="54409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</genome_strand>
        <mrna_strand>CTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>111</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3233" PGL_stop="2358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3233" e_stop="2358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="3233" e_stop="2358" e_length="876"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3225" stop="2895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2975" stop="2358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377799" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAGAGTTGGGACGTTTATAATTTCTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</gDNA_template>
            <first_frame> H  A  S  I  L  F  *  W  Q  N  Y  S  *  T  A  Q  Y  N  A  T  H  L  G  L  G  W  L  M  T  C  L  C  *  S  N  L  F  S  R  D  L  V  N  F  F  L  I  L  Y  F  I  Y  C  Y  N  S  K  N  N  S  F  I  T  V  P  F  *  F  I  L  E  K  A  N  I  L  R  *  Q  *  L  V  *  *  S  *  F  C  P  Y  *  I  W  F  K  K  N  E  L  K  L  R  N  F  *  E  V  K  *  E  Y  D  R  I  F  F  L  F  F  L  D  L  L  K  W  T  S  K  *  V  H  L  K  E  E  M  *  T  N  *  *  K  Q  S  K  *  V  L  K  P  C  K  I  T  K  I  *  N  L  L  Q  F  V  R  V  W  L  *  F  I  I  G  P  A  I  *  S  V  L  A  Q  T  N  W  V  G  L  K  *  G  S  V  H  L  L  F  *  S  V  *  M  *  F  N  L  F  N  C  R  S  Y  Y  D  Y  G  R  T  N  V  Y  P  Y  R  K  L  L  G  L  L  R  I  E  L  G  R  L  *  F  L  L  S  F  Y  C  L  A  Y  P  I  E  E  F  R  H  I  Y  I  L  S  V  K  N  S  S  H  L  V  F  T  I  I  N  H  I  F  F  Q  C  S  Q  I  C  V  *  Q  *  *  S  *  F  G  L </first_frame>
            <second_frame>  M  L  Q  F  C  S  S  G  K  I  I  V  K  P  P  N  T  T  Q  P  I  *  V  W  V  G  *  *  P  A  Y  V  S  L  I  Y  F  L  E  I  L  L  I  F  F  *  F  Y  T  L  Y  I  A  I  I  L  K  I  I  V  L  L  L  S  L  F  S  S  F  *  K  R  Q  I  Y  *  D  N  S  S  *  Y  S  E  V  N  F  V  L  I  K  Y  G  S  K  R  M  N  *  S  L  E  I  S  K  K  L  N  E  S  M  I  E  F  F  F  C  S  F  L  I  C  *  N  G  Q  V  N  R  Y  I  *  K  R  K  C  R  Q  I  N  R  N  R  A  S  R  Y  *  N  L  V  K  *  Q  R  Y  E  I  Y  Y  N  L  C  G  F  G  Y  D  S  L  L  V  Q  L  S  N  L  F  W  P  K  Q  I  G  L  G  *  N  K  V  R  F  I  Y  Y  F  D  P  S  K  C  N  S  I  C  S  I  A  G  L  I  M  I  M  G  E  L  M  S  I  P  T  E  S  C  *  V  C  Y  A  *  S  W  D  V  Y  N  F  F  C  L  F  I  V  W  P  I  Q  L  K  N  F  D  I  Y  I  S  Y  R  *  R  I  R  H  I  W  C  L  Q  *  *  T  I  Y  F  F  N  V  H  R  F  V  S  N  N  N  N  H  S  L  V   </second_frame>
            <third_frame>   C  F  N  F  V  L  V  A  K  L  *  L  N  R  P  I  Q  R  N  P  F  R  F  G  L  V  N  D  L  L  M  L  V  *  F  I  F  *  R  S  C  *  F  F  F  D  F  I  L  Y  I  L  L  *  F  *  K  *  *  F  Y  Y  C  P  F  L  V  H  F  R  K  G  K  Y  I  K  I  T  V  V  S  I  V  K  L  I  L  S  L  L  N  M  V  Q  K  E  *  I  K  A  *  K  F  L  R  S  *  M  R  V  *  *  N  F  F  F  V  L  S  *  F  V  K  M  D  K  *  I  G  T  S  K  R  G  N  V  D  K  L  I  E  T  E  Q  V  G  T  K  T  L  *  N  N  K  D  M  K  S  T  T  I  C  A  G  L  V  M  I  H  Y  W  S  S  Y  L  I  C  F  G  P  N  K  L  G  W  V  E  I  R  F  G  S  F  I  I  L  I  R  L  N  V  I  Q  S  V  Q  L  P  V  L  L  *  L  W  A  N  *  C  L  S  L  P  K  A  V  R  F  A  T  H  R  V  G  T  F  I  I  S  S  V  F  L  L  S  G  L  S  N  *  R  I  S  T  Y  I  Y  L  I  G  E  E  F  V  T  F  G  V  Y  N  N  K  P  Y  I  F  S  M  F  T  D  L  C  L  T  I  I  I  I  V  W  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9074" PGL_stop="3279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9074" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="3914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9074" e_stop="8940" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="4528" e_stop="3914" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9074" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9062" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9059" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9055" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9055" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9054" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9050" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9045" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9043" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9035" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9034" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9024" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9020" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8981" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8821" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7902" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4777"/>
              <exon start="4528" stop="4379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4512" stop="3914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</gDNA_template>
            <first_frame> I  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  V  R  I  R  K  L  M  N  Y  *  S  R  T  R  L  M  P  F  G  L  T  V  I  S  F  L  S  *  L  H  I  L  P  *  E  G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L  I  S  M  S  S  K  G  S  G  L  T  I  K  I  L  Q  T  *  F  F  I  H  L  K  M  N  </first_frame>
            <second_frame>  Y  S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R  *  G  *  E  N  S  *  I  T  E  V  A  L  G  *  C  P  L  V  *  Q  S  F  R  F  C  L  N  F  I  F  C  P  E  K  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I  *  S  Q  *  V  P  R  V  V  V  *  P  *  R  S  C  R  L  N  S  L  F  I  L  K  *  T </second_frame>
            <third_frame>   I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I  G  K  D  K  K  T  H  E  L  L  K  S  H  *  V  N  A  L  W  S  D  S  H  F  V  F  V  L  T  S  Y  S  A  L  R  R  C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  N  L  N  E  F  Q  G  *  W  F  D  H  K  D  L  A  D  L  I  L  Y  S  S  *  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9074" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9074" e_stop="8940" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4910" e_stop="4681" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9074" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9062" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9059" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9055" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9055" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9054" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9050" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9045" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9043" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9035" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9034" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9024" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9020" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8981" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8821" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7902" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7901" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5281" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215636" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAA</gDNA_template>
            <first_frame> I  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *  G  L  T  S  F  C  C  T  *  P  E  L  L  L  M  L  H  L  H  S  G  I  M  E  W  F  C  D  I  K  I  S  </first_frame>
            <second_frame>  Y  S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  V  *  L  L  F  V  V  L  N  Q  N  F  F  *  C  Y  I  C  I  L  V  L  W  N  G  F  V  I  L  R  F  Q </second_frame>
            <third_frame>   I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  R  F  N  F  F  L  L  Y  L  T  R  T  S  F  D  V  T  S  A  F  W  Y  Y  G  M  V  L  *  Y  *  D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9068" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5165" e_stop="4982"/>
            <exon e_start="4910" e_stop="4769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9068" e_stop="8940" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5165" e_stop="4982" e_length="184"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="0.965">
            <gDNA_exon_boundary e_start="4910" e_stop="4769" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9068" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5165" stop="4982"/>
              <exon start="4910" stop="4769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9050" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9043" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9034" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8981" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACT</gDNA_template>
            <first_frame> L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *  G  L  T </first_frame>
            <second_frame>  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  V  *   </second_frame>
            <third_frame>   Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  S :   A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  R  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5165" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9056" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="8183" e_stop="8145"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="3914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.267" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="9056" e_stop="8940" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.905">
            <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8183" e_stop="8145" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.267" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="7" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="9" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="4528" e_stop="3914" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9056" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="8183" stop="8145"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="8183" stop="8145"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7902" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4777"/>
              <exon start="4528" stop="4379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4512" stop="3914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</gDNA_template>
            <first_frame> P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : A  L  A  G  T  C  T  V  R  *  K  D  A   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  V  R  I  R  K  L  M  N  Y  *  S  R  T  R  L  M  P  F  G  L  T  V  I  S  F  L  S  *  L  H  I  L  P  *  E  G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L  I  S  M  S  S  K  G  S  G  L  T  I  K  I  L  Q  T  *  F  F  I  H  L  K  M  N  </first_frame>
            <second_frame>  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  L  *  P  V  P  A  L  L  G  R  R  M  Q  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R  *  G  *  E  N  S  *  I  T  E  V  A  L  G  *  C  P  L  V  *  Q  S  F  R  F  C  L  N  F  I  F  C  P  E  K  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I  *  S  Q  *  V  P  R  V  V  V  *  P  *  R  S  C  R  L  N  S  L  F  I  L  K  *  T </second_frame>
            <third_frame>   I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  S :   F  S  R  Y  L  H  C  *  V  E  G  C  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I  G  K  D  K  K  T  H  E  L  L  K  S  H  *  V  N  A  L  W  S  D  S  H  F  V  F  V  L  T  S  Y  S  A  L  R  R  C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  N  L  N  E  F  Q  G  *  W  F  D  H  K  D  L  A  D  L  I  L  Y  S  S  *  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8158" stop="8145"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEGCRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7785" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4835"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGKSWFDLRSTALMLRELTKVEFWSLYKGQKGGQEAAVLDQGIVIIGTRILEGEAEVEVEVEVGEGMSVISTVEETEITVIGAEAAALITTEVVGEVNMMRTGAAEVGLMEEVPPLLAVAPVLEGALLHEEQLLPGMLVQMDVITRTGLQLQRVYHLGVDVLVLAAPCHVLMLMIEEQGRSHSCNLALVDAAYQDIPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="8183" stop="8159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRSFSRYLHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="9072" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="3279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9072" e_stop="8940" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7731" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="8" e_score="0.999">
            <gDNA_exon_boundary e_start="4528" e_stop="3279" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9072" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="3279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4777"/>
              <exon start="4528" stop="4379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4512" stop="3914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGAA</gDNA_template>
            <first_frame> I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D  G  N  *  S  H  *  Y  L  D  G  S  L  C  C  C  C  S  H  *  Y  L  V  T  G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I  G  K  D  K  K  T  H  E  L  L  K  S  H  *  V  N  A  L  W  S  D  S  H  F  V  F  V  L  T  S  Y  S  A  L  R  R  C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  N  L  N  E  F  Q  G  *  W  F  D  H  K  D  L  A  D  L  I  L  Y  S  S  *  N  E  Q  I  I  L  N  F  P  I  T  N  T  L  F  *  C  L  F  A  L  W  S  *  K  C  S  S  S  T  *  H  T  P  I  Q  C  M  I  S  C  L  Y  L  *  S  S  S  *  Y  L  *  I  C  C  C  C  W  L  I  A  Y  Q  T  D  P  A  F  W  C  *  W  F  A  *  C  V  *  L  D  P  L  H  V  P  S  E  G  A  *  A  V  C  L  *  C  A  D  C  H  V  S  S  G  M  H  Q  S  G  F  F  F  I  E  M  C  A  H  Y  Q  F  G  D  L  I  D  S  C  E  M  F  N  L  S  N  I  T  F  F  D  Y  I  F  K  C  L  E  F  V  S  L  D  S  G  *  I  T  S  F  R  C  S  P  Y  R  I  C  V  L  S  Y  E  S  C  S  Y  V  L  V  T  I  L  N  N  L  F  L  L  N  G  *  V  *  L  V  W  R  G  S  W  G  R  *  L  D  I  N  L  V  F  Y  L  L  R  </first_frame>
            <second_frame>  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  V  T  D  H  I  N  I  W  M  V  A  Y  V  A  V  V  H  T  D  I  W  S  Q  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  V  R  I  R  K  L  M  N  Y  *  S  R  T  R  L  M  P  F  G  L  T  V  I  S  F  L  S  *  L  H  I  L  P  *  E  G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L  I  S  M  S  S  K  G  S  G  L  T  I  K  I  L  Q  T  *  F  F  I  H  L  K  M  N  K  *  Y  *  I  S  Q  S  L  I  P  C  S  S  V  Y  L  L  Y  G  L  E  S  V  L  Q  V  H  S  T  P  P  Y  S  A  *  F  H  A  Y  T  C  E  V  L  A  D  I  C  R  S  V  V  A  V  G  *  L  L  I  K  L  I  L  L  F  G  V  D  G  L  L  D  V  F  N  W  I  L  C  T  C  L  L  K  E  L  K  L  C  V  Y  D  V  L  T  A  M  S  P  L  V  C  T  N  L  G  S  F  S  S  R  C  V  H  I  I  N  L  E  I  *  S  I  P  V  R  C  L  I  Y  R  T  *  P  S  L  I  T  S  S  S  V  W  N  L  C  P  W  T  A  V  K  L  P  H  L  G  V  P  H  T  E  F  V  S  S  H  M  S  L  V  R  M  C  L  L  P  Y  *  T  I  S  F  C  *  M  A  E  F  D  L  F  G  E  E  V  G  E  G  N  *  I  *  I  W  S  F  T  C  Y  E </second_frame>
            <third_frame>   S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W  *  L  I  T  L  I  F  G  W  *  P  M  L  L  L  F  T  L  I  F  G  H  R  K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R  *  G  *  E  N  S  *  I  T  E  V  A  L  G  *  C  P  L  V  *  Q  S  F  R  F  C  L  N  F  I  F  C  P  E  K  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I  *  S  Q  *  V  P  R  V  V  V  *  P  *  R  S  C  R  L  N  S  L  F  I  L  K  *  T  N  N  I  K  F  P  N  H  *  Y  L  V  L  V  S  I  C  F  M  V  L  K  V  F  F  K  Y  I  A  H  P  H  T  V  H  D  F  M  L  I  L  V  K  F  *  L  I  S  V  D  L  L  L  L  L  A  D  C  L  S  N  *  S  C  F  L  V  L  M  V  C  L  M  C  L  I  G  S  S  A  R  A  F  *  R  S  L  S  C  V  F  M  M  C  *  L  P  C  L  L  W  Y  A  P  I  W  V  L  F  H  R  D  V  C  T  L  S  I  W  R  F  D  R  F  L  *  D  V  *  F  I  E  H  N  L  L  *  L  H  L  Q  V  S  G  I  C  V  P  G  Q  R  L  N  Y  L  I  *  V  F  P  I  Q  N  L  C  P  L  I  *  V  L  F  V  C  A  C  Y  H  I  E  Q  S  L  F  A  K  W  L  S  L  T  C  L  E  R  K  L  G  K  V  T  R  Y  K  F  G  L  L  L  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7785" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGKSWFDLRSTALMLRELTKVEFWSLYKGQKGGQEAAVLDQGIVIIGTRILEGEAEVEVEVEVGEGMSVISTVEETEITVIGAEAAALITTEVVGEVNMMRTGAAEVGLMEEVPPLLAVAPVLEGALLHEEQLLPGMLVQMDVITRTGLQLQRVYHLGVDVLVLAAPCHVLMLMIEEQGRSHSCNLALVDAAYQDIPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7810" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLVTGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3743" stop="3549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIKLILLFGVDGLLDVFNWILCTCLLKELKLCVYDVLTAMSPLVCTNLGSFSSRCVHIINLEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25867" PGL_stop="26354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25867" e_stop="26354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="25867" e_stop="26354" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25867" stop="26354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAGCCAATGACAAAGAAGTTTAGGAAAGTGACTTGCCTATACAAAAGGCACTTTCCTAAACACTTTTCTTTAGTTTTTGCAACTTGACAAACACTTTTCAAGAACTCTTGCAAAGACTAACACAAAGCATATGCAGAATCATTCCTAGGACAACAGCAACATCTGAAGCCTTTCGTCTAGTTGTCTAGGAATTTATTCTCTTGTTCTCAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGAGTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  A  E  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  S  Q  *  Q  R  S  L  G  K  *  L  A  Y  T  K  G  T  F  L  N  T  F  L  *  F  L  Q  L  D  K  H  F  S  R  T  L  A  K  T  N  T  K  H  M  Q  N  H  S  *  D  N  S  N  I  *  S  L  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  E  C  F  S  T  *  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  D  *   </first_frame>
            <second_frame>  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  A  N  D  K  E  V  *  E  S  D  L  P  I  Q  K  A  L  S  *  T  L  F  F  S  F  C  N  L  T  N  T  F  Q  E  L  L  Q  R  L  T  Q  S  I  C  R  I  I  P  R  T  T  A  T  S  E  A  F  R  L  V  V  *  E  F  I  L  L  F  S  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  S  V  F  L  L  R  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  R  F  C  F  *  R  L  V  K  T  I  E  </second_frame>
            <third_frame>   W  R  W  C  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  T  K  K  F  R  K  V  T  C  L  Y  K  R  H  F  P  K  H  F  S  L  V  F  A  T  *  Q  T  L  F  K  N  S  C  K  D  *  H  K  A  Y  A  E  S  F  L  G  Q  Q  Q  H  L  K  P  F  V  *  L  S  R  N  L  F  S  C  S  Q  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  V  F  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27031" PGL_stop="27826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27031" e_stop="27826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="27031" e_stop="27826" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27031" stop="27826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGAT</gDNA_template>
            <first_frame> T  I  F  *  L  L  A  N  D  D  S  S  H  N  F  *  F  P  S  V  Y  Y  I  L  I  S  F  R  G  Y  I  C  Y  H  *  G  S  N  C  S  S  K  M  E  S  N  F  P  K  P  E  Q  F  F  I  G  F  V  D  A  K  W  T  C  W  Y  Q  *  H  W  S  G  E  F  *  C  M  *  G  L  V  W  S  Y  M  F  *  R  *  G  I  H  V  E  Y  D  K  C  W  Y  Q  W  H  T  V  *  F  S  I  F  I  T  P  F  S  W  L  S  *  S  *  H  Q  Q  L  L  W  H  Y  P  T  *  N  R  K  A  H  *  S  W  L  S  *  L  V  L  Q  S  D  F  G  H  N  P  T  T  N  R  L  I  N  K  A  *  D  P  P  H  L  *  Q  P  I  I  W  F  H  S  G  G  N  R  S  P  K  V  F  D  *  A  S  F  E  F  *  L  S  *  W  F  N  S  C  F  I  G  D  F  G  Q  I  V  L  F  A  S  V  *  E  P  S  F  W  F  H  S  S  R  N  R  E  T  C  Q  S  P  S  T  F  S  *  F  K  Q  V  N  W  S  Y  S  S  R  N  W  K  T  C  Q  S  P  S  T  F  S  *  </first_frame>
            <second_frame>  Q  S  F  N  Y  *  Q  M  M  I  V  P  T  I  F  N  F  L  Q  C  I  T  F  L  Y  L  F  A  V  T  F  A  T  T  E  E  A  T  A  L  L  K  W  K  A  T  F  Q  N  Q  N  N  S  L  L  A  S  W  T  L  S  G  P  A  G  T  N  S  I  G  A  A  S  S  N  A  C  E  D  W  Y  G  V  T  C  S  N  G  R  V  Y  M  L  N  M  T  N  A  G  I  N  G  T  L  Y  D  F  P  F  S  S  L  P  F  L  G  Y  L  D  L  S  I  N  N  F  S  G  T  I  P  P  E  I  G  K  L  T  N  L  G  Y  L  D  L  S  F  N  Q  I  S  G  I  I  P  P  Q  I  G  S  L  T  K  L  E  T  L  H  I  F  N  S  Q  L  Y  G  S  I  P  E  E  I  G  H  L  R  S  L  T  E  L  A  L  N  S  N  S  L  S  G  S  I  P  A  S  L  G  T  L  D  K  L  S  Y  L  H  L  Y  E  N  H  L  S  G  S  I  P  A  E  I  G  K  L  V  N  L  L  Q  L  F  L  D  S  N  K  L  T  G  H  I  P  P  E  I  G  K  L  V  N  L  L  Q  L  F  L  D </second_frame>
            <third_frame>   N  L  L  I  I  S  K  *  *  *  F  P  Q  F  L  I  S  F  S  V  L  H  S  Y  I  F  S  R  L  H  L  L  P  L  R  K  Q  L  L  F  *  N  G  K  Q  L  S  K  T  R  T  I  L  Y  W  L  R  G  R  *  V  D  L  L  V  P  I  A  L  E  R  R  V  L  M  H  V  R  T  G  M  E  L  H  V  L  T  V  G  Y  T  C  *  I  *  Q  M  L  V  S  M  A  H  C  M  I  F  H  F  H  H  S  L  F  L  V  I  L  I  L  A  S  T  T  S  L  A  L  S  H  L  K  *  E  S  S  L  I  L  A  I  L  T  C  P  S  I  R  F  R  A  *  S  H  H  K  S  A  H  *  Q  S  L  R  P  S  T  S  L  T  A  N  Y  M  V  P  F  R  R  K  *  V  T  *  G  L  *  L  S  *  L  *  I  L  T  L  L  V  V  Q  F  L  L  H  W  G  L  W  T  N  C  L  I  C  I  C  M  R  T  I  F  L  V  P  F  Q  Q  K  *  G  N  L  S  I  S  F  N  F  F  L  I  Q  T  S  *  L  V  I  F  L  Q  K  L  E  N  L  S  I  S  F  N  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27050" stop="27826"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMMIVPTIFNFLQCITFLYLFAVTFATTEEATALLKWKATFQNQNNSLLASWTLSGPAGTNSIGAASSNACEDWYGVTCSNGRVYMLNMTNAGINGTLYDFPFSSLPFLGYLDLSINNFSGTIPPEIGKLTNLGYLDLSFNQISGIIPPQIGSLTKLETLHIFNSQLYGSIPEEIGHLRSLTELALNSNSLSGSIPASLGTLDKLSYLHLYENHLSGSIPAEIGKLVNLLQLFLDSNKLTGHIPPEIGKLVNLLQLFLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28075" PGL_stop="28640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28075" e_stop="28640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="28075" e_stop="28640" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28075" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTATCTGAAGCTTTTGGCATCCATCCCGAGCTGAAGTTCATTGATTTGAGCGACAATGATTTTCATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAGCAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAATTTAGACTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAGATAGGGGTATAACTCATCTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAAT</gDNA_template>
            <first_frame> L  E  Q  L  L  Q  F  Q  K  G  S  L  Q  *  Q  Q  L  Y  W  E  F  I  *  S  F  W  H  P  S  R  A  E  V  H  *  F  E  R  Q  *  F  S  W  R  T  Q  Q  Q  L  G  E  I  Q  E  F  D  Y  F  L  D  S  Q  K  *  H  *  R  *  H  T  T  R  D  W  K  H  Q  R  S  F  G  T  *  S  F  S  K  S  F  G  W  A  N  T  R  G  I  W  K  I  N  L  S  G  *  A  L  I  E  K  Q  P  N  F  W  Q  Y  T  S  G  T  W  V  T  D  K  F  R  L  P  *  S  I  R  Q  *  I  E  W  V  D  P  N  V  F  R  R  L  P  T  P  V  S  L  E  P  Q  L  *  Q  V  W  P  E  N  S  K  G  D  R  G  I  T  H  L  N  V  L  D  L  S  H  N  L  L  V  G  E   </first_frame>
            <second_frame>  L  S  N  C  S  S  F  K  R  V  R  F  N  N  N  S  F  T  G  N  L  S  E  A  F  G  I  H  P  E  L  K  F  I  D  L  S  D  N  D  F  H  G  E  L  S  S  N  W  G  K  Y  K  N  L  T  T  F  W  I  A  R  N  N  I  S  G  S  I  P  P  E  I  G  N  I  K  G  L  L  G  L  D  L  S  A  N  H  L  V  G  Q  I  P  E  E  F  G  K  L  T  S  L  V  E  L  S  L  K  N  N  Q  I  S  G  N  I  P  Q  E  L  G  S  L  T  N  L  D  S  L  D  L  S  D  N  R  L  N  G  S  I  P  T  F  L  G  D  Y  Q  H  L  F  H  L  N  L  S  C  N  K  F  G  Q  K  I  P  K  E  I  G  V  *  L  I  L  M  Y  L  I  *  A  I  I  F  W  L  E  K  </second_frame>
            <third_frame>   *  A  T  A  P  V  S  K  G  F  A  S  I  T  T  A  L  L  G  I  Y  L  K  L  L  A  S  I  P  S  *  S  S  L  I  *  A  T  M  I  F  M  A  N  S  A  A  T  G  G  N  T  R  I  *  L  L  F  G  *  P  E  I  T  L  A  V  A  Y  H  Q  R  L  E  T  S  K  V  F  W  D  L  I  F  Q  Q  I  I  W  L  G  K  Y  Q  R  N  L  E  N  *  P  L  W  L  S  S  H  *  K  T  T  K  F  L  A  I  Y  L  R  N  L  G  H  *  Q  I  *  T  P  L  I  Y  Q  T  I  D  *  M  G  R  S  Q  R  F  *  E  I  T  N  T  C  F  T  *  T  S  V  V  T  S  L  A  R  K  F  Q  R  R  *  G  Y  N  S  S  *  C  T  *  F  E  P  *  S  S  G  W  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28076" stop="28591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNCSSFKRVRFNNNSFTGNLSEAFGIHPELKFIDLSDNDFHGELSSNWGKYKNLTTFWIARNNISGSIPPEIGNIKGLLGLDLSANHLVGQIPEEFGKLTSLVELSLKNNQISGNIPQELGSLTNLDSLDLSDNRLNGSIPTFLGDYQHLFHLNLSCNKFGQKIPKEIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="31180" PGL_stop="31854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31180" e_stop="31854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="31180" e_stop="31854" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31180" stop="31854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCATTTTTCTCAAACCTTCCATAGAGGTGAGTTGTGGCATATATCCAACATATAATGATTTTATCACATCTGGACCAATTCTCTTATAGAATGGTCGAGTATTCACGATACTCATCACAAGTCACATTGTCTTCAAGGAATGAACTAATTATTTATATGTACTTCATAAATTTGCATTATAAGCAAATTGTCATGGCTTTAAAATTCATCATATTTCCATAACACACCTCAACATCACTTTGAAAGATCAAGTGTACCATTACTTTATCTTCTTGTATCATGATAGAGGATTTATAAACTTGTCAAATTATTGGGTTGACAACATTCACAAGTCTAATGACATTTCATACCATTTGGATAATAAAAATTGCCTTCACATTTTGAAGGATTATTTGAAGAACTTATAGTGTTCTTCCTTCTATCATTACCACAATGATGACTATTATAATTTTGTCCCTCCACGCCCTTATTCATATAATTAATTATTTGTCATCTTTCAGACTAATCATTCACTGCTACCACATTCATATGATTGAATGGAGCAAGTCAACAGACGGATTTCAGAGTTATCACATGTTGCTACCACATTCTTTTAAAGGAATGGAGCAAATTCAATCTGATGAATTTCAAGATATTTCATCAAAAATATATTATTTTTCTTAGTCATTATTTT</gDNA_template>
            <first_frame> Y  H  F  S  Q  T  F  H  R  G  E  L  W  H  I  S  N  I  *  *  F  Y  H  I  W  T  N  S  L  I  E  W  S  S  I  H  D  T  H  H  K  S  H  C  L  Q  G  M  N  *  L  F  I  C  T  S  *  I  C  I  I  S  K  L  S  W  L  *  N  S  S  Y  F  H  N  T  P  Q  H  H  F  E  R  S  S  V  P  L  L  Y  L  L  V  S  *  *  R  I  Y  K  L  V  K  L  L  G  *  Q  H  S  Q  V  *  *  H  F  I  P  F  G  *  *  K  L  P  S  H  F  E  G  L  F  E  E  L  I  V  F  F  L  L  S  L  P  Q  *  *  L  L  *  F  C  P  S  T  P  L  F  I  *  L  I  I  C  H  L  S  D  *  S  F  T  A  T  T  F  I  *  L  N  G  A  S  Q  Q  T  D  F  R  V  I  T  C  C  Y  H  I  L  L  K  E  W  S  K  F  N  L  M  N  F  K  I  F  H  Q  K  Y  I  I  F  L  S  H  Y  F </first_frame>
            <second_frame>  I  I  F  L  K  P  S  I  E  V  S  C  G  I  Y  P  T  Y  N  D  F  I  T  S  G  P  I  L  L  *  N  G  R  V  F  T  I  L  I  T  S  H  I  V  F  K  E  *  T  N  Y  L  Y  V  L  H  K  F  A  L  *  A  N  C  H  G  F  K  I  H  H  I  S  I  T  H  L  N  I  T  L  K  D  Q  V  Y  H  Y  F  I  F  L  Y  H  D  R  G  F  I  N  L  S  N  Y  W  V  D  N  I  H  K  S  N  D  I  S  Y  H  L  D  N  K  N  C  L  H  I  L  K  D  Y  L  K  N  L  *  C  S  S  F  Y  H  Y  H  N  D  D  Y  Y  N  F  V  P  P  R  P  Y  S  Y  N  *  L  F  V  I  F  Q  T  N  H  S  L  L  P  H  S  Y  D  *  M  E  Q  V  N  R  R  I  S  E  L  S  H  V  A  T  T  F  F  *  R  N  G  A  N  S  I  *  *  I  S  R  Y  F  I  K  N  I  L  F  F  L  V  I  I   </second_frame>
            <third_frame>   S  F  F  S  N  L  P  *  R  *  V  V  A  Y  I  Q  H  I  M  I  L  S  H  L  D  Q  F  S  Y  R  M  V  E  Y  S  R  Y  S  S  Q  V  T  L  S  S  R  N  E  L  I  I  Y  M  Y  F  I  N  L  H  Y  K  Q  I  V  M  A  L  K  F  I  I  F  P  *  H  T  S  T  S  L  *  K  I  K  C  T  I  T  L  S  S  C  I  M  I  E  D  L  *  T  C  Q  I  I  G  L  T  T  F  T  S  L  M  T  F  H  T  I  W  I  I  K  I  A  F  T  F  *  R  I  I  *  R  T  Y  S  V  L  P  S  I  I  T  T  M  M  T  I  I  I  L  S  L  H  A  L  I  H  I  I  N  Y  L  S  S  F  R  L  I  I  H  C  Y  H  I  H  M  I  E  W  S  K  S  T  D  G  F  Q  S  Y  H  M  L  L  P  H  S  F  K  G  M  E  Q  I  Q  S  D  E  F  Q  D  I  S  S  K  I  Y  Y  F  S  *  S  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31578" stop="31844"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTYSVLPSIITTMMTIIILSLHALIHIINYLSSFRLIIHCYHIHMIEWSKSTDGFQSYHMLLPHSFKGMEQIQSDEFQDISSKIYYFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31364" stop="31588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANCHGFKIHHISITHLNITLKDQVYHYFIFLYHDRGFINLSNYWVDNIHKSNDISYHLDNKNCLHILKDYLKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32012" PGL_stop="31235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32012" e_stop="31235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="32012" e_stop="31235" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32012" stop="31235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31944" stop="31273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACTGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTCTAGCCAATGCACCATAGCGATGATAAAATAATGACTAAGAAAAATAATATATTTTTGATGAAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATATGAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCATTCTATAAGAGAATTGGTCCAGATGTGATAAAATCATT</gDNA_template>
            <first_frame> D  K  T  I  D  S  S  S  I  A  P  K  G  *  D  I  N  *  S  F  D  A  L  *  L  G  S  S  P  I  E  L  W  R  N  T  P  Y  M  G  K  T  L  S  S  S  Q  C  T  I  A  M  I  K  *  *  L  R  K  I  I  Y  F  *  *  N  I  L  K  F  I  R  L  N  L  L  H  S  F  K  R  M  W  *  Q  H  V  I  T  L  K  S  V  C  *  L  A  P  F  N  H  M  N  V  V  A  V  N  D  *  S  E  R  *  Q  I  I  N  Y  M  N  K  G  V  E  G  Q  N  Y  N  S  H  H  C  G  N  D  R  R  K  N  T  I  S  S  S  N  N  P  S  K  C  E  G  N  F  Y  Y  P  N  G  M  K  C  H  *  T  C  E  C  C  Q  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  R  *  S  N  G  T  L  D  L  S  K  *  C  *  G  V  L  W  K  Y  D  E  F  *  S  H  D  N  L  L  I  M  Q  I  Y  E  V  H  I  N  N  *  F  I  P  *  R  Q  C  D  L  *  *  V  S  *  I  L  D  H  S  I  R  E  L  V  Q  M  *  *  N  H  </first_frame>
            <second_frame>  I  R  R  *  I  Q  V  L  S  H  Q  K  G  K  T  S  I  R  V  L  M  H  C  D  W  V  Q  V  P  *  N  Y  G  V  T  R  L  I  W  V  R  H  *  V  L  A  N  A  P  *  R  *  *  N  N  D  *  E  K  *  Y  I  F  D  E  I  S  *  N  S  S  D  *  I  C  S  I  P  L  K  E  C  G  S  N  M  *  *  L  *  N  P  S  V  D  L  L  H  S  I  I  *  M  W  *  Q  *  M  I  S  L  K  D  D  K  *  L  I  I  *  I  R  A  W  R  D  K  I  I  I  V  I  I  V  V  M  I  E  G  R  T  L  *  V  L  Q  I  I  L  Q  N  V  K  A  I  F  I  I  Q  M  V  *  N  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  Y  G  N  M  M  N  F  K  A  M  T  I  C  L  *  C  K  F  M  K  Y  I  *  I  I  S  S  F  L  E  D  N  V  T  C  D  E  Y  R  E  Y  S  T  I  L  *  E  N  W  S  R  C  D  K  I  I </second_frame>
            <third_frame>   *  D  D  R  F  K  F  Y  R  T  K  R  V  R  H  Q  L  E  F  *  C  T  V  I  G  F  K  S  H  R  I  M  A  *  H  A  L  Y  G  *  D  I  E  F  *  P  M  H  H  S  D  D  K  I  M  T  K  K  N  N  I  F  L  M  K  Y  L  E  I  H  Q  I  E  F  A  P  F  L  *  K  N  V  V  A  T  C  D  N  S  E  I  R  L  L  T  C  S  I  Q  S  Y  E  C  G  S  S  E  *  L  V  *  K  M  T  N  N  *  L  Y  E  *  G  R  G  G  T  K  L  *  *  S  S  L  W  *  *  *  K  E  E  H  Y  K  F  F  K  *  S  F  K  M  *  R  Q  F  L  L  S  K  W  Y  E  M  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  P  *  Q  F  A  Y  N  A  N  L  *  S  T  Y  K  *  L  V  H  S  L  K  T  M  *  L  V  M  S  I  V  N  T  R  P  F  Y  K  R  I  G  P  D  V  I  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37489" PGL_stop="38346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37489" e_stop="38193"/>
            <exon e_start="38295" e_stop="38346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.695" e_score="0.997"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="37489" e_stop="38193" e_length="705"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.695">
            <gDNA_intron_boundary i_start="38194" i_stop="38294" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="38295" e_stop="38346" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37489" stop="38193"/>
              <exon start="38295" stop="38346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGAGGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTG : AGCTTGCATATACAATGAAGGTTACACAAATGTGTGATGTGTATAGCTTTGG</gDNA_template>
            <first_frame> S  S  S  S  L  Y  F  L  F  W  E  H  *  C  C  F  V  L  S  L  V  L  S  L  C  V  T  K  E  E  E  L  E  T  L  K  E  G  M  V  M  V  G  F  R  Y  P  C  *  M  G  R  H  C  T  G  T  S  *  M  P  Q  K  S  S  M  Q  N  F  A  L  G  K  E  V  R  E  V  F  T  R  *  T  F  H  Y  *  E  I  *  L  *  R  D  F  I  L  H  F  R  I  H  I  P  K  A  S  *  M  K  *  G  H  *  L  G  L  S  T  G  T  L  *  A  S  T  A  I  V  R  K  H  N  T  H  S  W  F  T  S  M  W  R  G  G  V  C  L  V  F  *  A  M  K  L  S  L  R  N  W  I  G  L  K  G  *  I  S  S  R  V  L  L  L  L  Y  L  T  C  T  R  I  V  H  H  P  L  F  I  E  T  Y  V  A  V  M  F  C  L  I  L  S  M  K  L  V  L  Q  T  L  E  *  Q  R  F  S  I  Q  T  R  P  I  A  P  R  L  Q  A  H  M  V  M  S  H  L  :  S  L  H  I  Q  *  R  L  H  K  C  V  M  C  I  A  L  </first_frame>
            <second_frame>  H  P  H  H  C  T  S  Y  S  G  S  I  S  A  A  L  C  F  R  W  F  S  L  Y  V  *  P  K  K  K  S  W  R  R  *  K  K  G  W  *  W  L  A  F  D  I  H  V  R  W  E  G  I  V  Q  G  H  L  K  C  H  R  R  V  R  C  K  I  L  H  W  A  R  R  S  G  K  C  L  Q  G  K  P  S  I  I  R  R  Y  S  C  E  E  T  S  F  F  I  S  E  Y  T  S  Q  K  L  H  K  *  S  K  G  I  D  W  D  *  A  P  E  H  C  E  P  L  R  L  L  F  E  S  T  T  L  T  L  G  L  R  V  C  G  E  G  E  F  V  *  C  F  K  Q  *  S  *  V  *  E  I  G  L  A  *  K  G  E  Y  H  Q  G  C  C  F  C  F  I  L  H  A  P  G  L  F  T  T  H  C  S  S  R  H  T  *  Q  *  C  F  A  *  F  *  V  *  S  S  C  C  R  L  W  N  S  K  D  S  Q  S  R  L  V  Q  L  H  R  A  C  R  H  I  W  L  C  R  T  * :   A  C  I  Y  N  E  G  Y  T  N  V  *  C  V  *  L  W </second_frame>
            <third_frame>   I  L  I  T  V  L  P  I  L  G  A  L  V  L  L  C  A  F  A  G  S  L  F  M  C  D  Q  R  R  R  V  G  D  V  E  R  R  D  G  D  G  W  L  S  I  S  M  L  D  G  K  A  L  Y  R  D  I  L  N  A  T  E  E  F  D  A  K  F  C  I  G  Q  G  G  Q  G  S  V  Y  K  V  N  L  P  L  L  G  D  I  A  V  K  R  L  H  S  S  F  Q  N  T  H  P  K  S  F  I  N  E  V  R  A  L  T  G  I  K  H  R  N  I  V  S  L  Y  G  Y  C  S  K  A  Q  H  S  L  L  V  Y  E  Y  V  E  R  G  S  L  S  S  V  L  S  N  E  V  E  S  K  K  L  D  W  L  K  R  V  N  I  I  K  G  V  A  F  A  L  S  Y  M  H  Q  D  C  S  P  P  I  V  H  R  D  I  R  S  S  N  V  L  L  D  S  E  Y  E  A  R  V  A  D  F  G  I  A  K  I  L  N  P  D  S  S  N  C  T  A  L  A  G  T  Y  G  Y  V  A  P   : E  L  A  Y  T  M  K  V  T  Q  M  C  D  V  Y  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37491" stop="38193"/>
                    <exon start="38295" stop="38344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILITVLPILGALVLLCAFAGSLFMCDQRRRVGDVERRDGDGWLSISMLDGKALYRDILNATEEFDAKFCIGQGGQGSVYKVNLPLLGDIAVKRLHSSFQNTHPKSFINEVRALTGIKHRNIVSLYGYCSKAQHSLLVYEYVERGSLSSVLSNEVESKKLDWLKRVNIIKGVAFALSYMHQDCSPPIVHRDIRSSNVLLDSEYEARVADFGIAKILNPDSSNCTALAGTYGYVAPELAYTMKVTQMCDVYSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="43406" PGL_stop="44201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43406" e_stop="44201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="43406" e_stop="44201" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43406" stop="44201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTGTTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCATCTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGCGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCA</gDNA_template>
            <first_frame> I  F  *  L  L  A  N  D  D  S  S  H  N  F  *  F  P  S  V  C  Y  I  L  I  S  F  R  G  Y  I  C  Y  H  *  G  S  N  C  S  S  K  M  E  S  I  F  P  K  P  E  Q  F  F  I  G  F  V  D  A  K  W  T  C  W  Y  Q  *  H  W  S  G  E  F  *  C  M  R  G  L  V  W  S  Y  M  F  *  R  *  G  I  H  V  E  Y  D  K  C  W  Y  Q  W  H  T  V  *  F  S  I  F  I  T  P  F  S  W  L  S  *  S  *  H  Q  Q  L  L  W  H  Y  P  T  *  N  R  K  A  H  *  S  W  L  S  *  L  V  L  Q  S  D  F  G  H  N  P  T  T  N  R  L  I  N  K  A  *  D  P  P  H  L  *  Q  P  I  I  W  F  H  S  G  G  N  R  S  P  K  V  F  D  *  A  S  F  E  F  *  L  S  *  W  F  N  S  C  F  I  G  D  F  G  Q  I  V  L  F  A  S  V  *  E  P  S  F  W  F  H  S  S  R  N  R  E  T  C  Q  S  P  S  T  F  S  *  F  K  Q  V  N  W  S  Y  S  S  R  N  W  K  T  C  Q  S  P  S  T  F  S  *  F  </first_frame>
            <second_frame>  S  F  N  Y  *  Q  M  M  I  V  P  T  I  F  N  F  L  Q  C  V  T  F  L  Y  L  F  A  V  T  F  A  T  T  E  E  A  T  A  L  L  K  W  K  A  S  F  Q  N  Q  N  N  S  L  L  A  S  W  T  L  S  G  P  A  G  T  N  S  I  G  A  A  S  S  N  A  C  E  D  W  Y  G  V  T  C  S  N  G  R  V  Y  M  L  N  M  T  N  A  G  I  N  G  T  L  Y  D  F  P  F  S  S  L  P  F  L  G  Y  L  D  L  S  I  N  N  F  S  G  T  I  P  P  E  I  G  K  L  T  N  L  G  Y  L  D  L  S  F  N  Q  I  S  G  I  I  P  P  Q  I  G  S  L  T  K  L  E  T  L  H  I  F  N  S  Q  L  Y  G  S  I  P  E  E  I  G  H  L  R  S  L  T  E  L  A  L  N  S  N  S  L  S  G  S  I  P  A  S  L  G  T  L  D  K  L  S  Y  L  H  L  Y  E  N  H  L  S  G  S  I  P  A  E  I  G  K  L  V  N  L  L  Q  L  F  L  D  S  N  K  L  T  G  H  I  P  P  E  I  G  K  L  V  N  L  L  Q  L  F  L  D  S </second_frame>
            <third_frame>   L  L  I  I  S  K  *  *  *  F  P  Q  F  L  I  S  F  S  V  L  H  S  Y  I  F  S  R  L  H  L  L  P  L  R  K  Q  L  L  F  *  N  G  K  H  L  S  K  T  R  T  I  L  Y  W  L  R  G  R  *  V  D  L  L  V  P  I  A  L  E  R  R  V  L  M  H  A  R  T  G  M  E  L  H  V  L  T  V  G  Y  T  C  *  I  *  Q  M  L  V  S  M  A  H  C  M  I  F  H  F  H  H  S  L  F  L  V  I  L  I  L  A  S  T  T  S  L  A  L  S  H  L  K  *  E  S  S  L  I  L  A  I  L  T  C  P  S  I  R  F  R  A  *  S  H  H  K  S  A  H  *  Q  S  L  R  P  S  T  S  L  T  A  N  Y  M  V  P  F  R  R  K  *  V  T  *  G  L  *  L  S  *  L  *  I  L  T  L  L  V  V  Q  F  L  L  H  W  G  L  W  T  N  C  L  I  C  I  C  M  R  T  I  F  L  V  P  F  Q  Q  K  *  G  N  L  S  I  S  F  N  F  F  L  I  Q  T  S  *  L  V  I  F  L  Q  K  L  E  N  L  S  I  S  F  N  F  F  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43422" stop="44201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMMIVPTIFNFLQCVTFLYLFAVTFATTEEATALLKWKASFQNQNNSLLASWTLSGPAGTNSIGAASSNACEDWYGVTCSNGRVYMLNMTNAGINGTLYDFPFSSLPFLGYLDLSINNFSGTIPPEIGKLTNLGYLDLSFNQISGIIPPQIGSLTKLETLHIFNSQLYGSIPEEIGHLRSLTELALNSNSLSGSIPASLGTLDKLSYLHLYENHLSGSIPAEIGKLVNLLQLFLDSNKLTGHIPPEIGKLVNLLQLFLDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="52117" PGL_stop="54409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52117" e_stop="52284"/>
            <exon e_start="52486" e_stop="52631"/>
            <exon e_start="53014" e_stop="53232"/>
            <exon e_start="53578" e_stop="53790"/>
            <exon e_start="53901" e_stop="54409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52117" e_stop="52284" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52486" e_stop="52631" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53014" e_stop="53232" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53578" e_stop="53790" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="53901" e_stop="54409" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52117" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52117" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52119" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52120" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52132" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52132" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52135" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52135" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52135" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52142" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52143" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52144" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52144" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52144" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52146" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52148" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52149" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52149" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52151" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52151" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52151" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52151" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52152" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52152" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52153" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52153" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52153" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52154" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52155" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52155" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52158" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52159" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52159" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52162" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52170" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52174" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52195" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52209" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52219" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52228" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52242" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52517" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52593" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52597" stop="52631"/>
              <exon start="53014" stop="53212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52609" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53162" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53593" stop="53790"/>
              <exon start="53901" stop="54368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302521" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53606" stop="53790"/>
              <exon start="53901" stop="54384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53606" stop="53790"/>
              <exon start="53901" stop="54373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53607" stop="53790"/>
              <exon start="53901" stop="54238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53645" stop="53790"/>
              <exon start="53901" stop="54399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53646" stop="53790"/>
              <exon start="53901" stop="54282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53721" stop="53790"/>
              <exon start="53901" stop="54363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287994" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53743" stop="53790"/>
              <exon start="53901" stop="54363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53932" stop="54409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53932" stop="54388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53932" stop="54382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53945" stop="54409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237084" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53988" stop="54409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236886" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG : GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG : AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG : CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG : CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</gDNA_template>
            <first_frame> N  V  *  K  I  D  S  L  L  I  T  L  H  F  R  V  L  T  I  I  S  S  S  C  P  H  R  E  E  E  K  W  Q  V  L  Q  F  R  Q  K  F  L  Q  S  L  K  T  V  N  N  S  D  L  P  S  K  :  D  G  E  R  M  R  S  *  L  Y  Q  F  W  L  I  E  M  R  L  N  A  N  *  F  D  R  L  M  L  R  L  L  G  K  I  C  L  K  S  W  T  E  N  L  L  M  I  L  R :   N  W  W  *  Y  G  H  W  I  L  Q  N  V  M  P  I  W  L  R  K  L  L  R  D  G  Q  K  A  T  L  F  L  W  R  *  L  V  P  D  L  L  K  N  W  F  W  Q  E  K  L  I  M  L  V  T  R  N  L  S  K  R  T  L  L  I  T  L  L  G  I  T  A  S :   F  W  Y  L  L  *  A  P  T  D  M  G  E  M  R  W  T  C  D  L  L  K  Q  N  L  K  C  C  M  R  R  S  P  I  R  L  T  V  T  M  R  S  L  E  F  *  P  Q  G  A  K  R  N  S  M  L  L  *  I  I  T  K  M  N  M  V  R  I  S  *  S :   N  *  K  M  R  M  S  L  L  H  C  *  G  P  P  *  K  V  L  S  T  P  S  T  I  S  W  R  F  F  V  M  Q  L  T  G  E  E  Q  R  K  I  I  *  P  E  L  S  L  Q  G  L  R  S  I  *  R  L  S  L  T  S  T  R  R  G  I  A  F  L  W  V  A  P  L  P  K  I  Q  E  E  I  M  R  I  C  W  W  L  Y  L  D  K  R  R  N  K  K  R  I  G  S  L  L  F  Y  N  D  Q  N  K  Y  A  I  L  P  Y  I  S  E  L  A  C  V  *  *  L  S  V  V  C  F  T  *  A  F  S  P  F  L  L  V  R  N  F  E  Y  E  S  L  C  C  L  K  M  F  S  N  D  L  H  P  L  Q  *  S  S  T  T  </first_frame>
            <second_frame>  M  C  K  K  L  T  P  Y  S  S  P  C  I  F  E  S  *  Q  S  Y  P  P  P  A  H  T  E  K  K  K  N  G  K  S  Y  S  S  G  R  S  S  F  S  R  *  R  L  *  T  T  P  I  C  L  Q  R :   M  G  N  E  *  E  V  D  Y  I  N  F  G  S  *  K  C  G  S  T  Q  I  D  S  T  D  L  C  *  D  F  W  G  R  S  A  *  R  V  G  Q  R  T  Y  S  *  F  *   : E  I  G  G  S  M  D  T  G  S  C  R  T  *  C  L  F  G  *  G  S  Y  *  E  M  D  K  K  Q  L  C  S  C  G  D  S  L  Y  Q  I  S  *  R  T  G  F  G  K  R  S  L  S  C  S  *  Q  E  I  S  R  R  G  R  C  L  S  H  Y  W  G  S  P  Q   : A  F  G  T  S  C  E  L  L  P  I  W  G  R  *  G  G  L  A  T  C  *  S  R  I  *  S  A  A  *  E  D  L  R  *  G  L  Q  *  R  *  G  H  *  N  F  S  H  K  E  Q  S  A  T  Q  C  Y  F  E  S  L  Q  R  *  I  W  *  G  Y  P  K   : A  I  R  R  *  G  *  V  C  C  T  V  K  G  H  H  K  R  S  C  L  P  R  A  L  F  R  G  G  S  S  *  C  N  *  Q  E  R  N  R  G  R  S  S  N  P  S  Y  R  Y  K  G  *  G  R  S  E  D  Y  R  *  R  V  P  E  E  G  *  R  S  S  G  S  R  H  C  Q  R  Y  R  R  R  L  *  E  Y  A  G  G  F  T  W  T  R  G  G  I  R  S  G  L  A  H  F  C  F  I  M  T  R  I  N  M  P  F  S  H  I  F  Q  S  W  H  V  F  D  D  *  V  W  S  V  S  H  E  L  L  V  L  F  F  L  *  E  T  L  N  M  N  L  C  A  V  *  K  C  S  L  M  I  C  I  H  Y  N  N  L  Q  L  R </second_frame>
            <third_frame>   C  V  K  N  *  L  P  T  H  H  P  A  F  S  S  L  D  N  H  I  L  L  L  P  T  Q  R  R  R  K  M  A  S  L  T  V  P  A  E  V  P  S  V  A  E  D  C  E  Q  L  R  S  A  F  K   : G  W  G  T  N  E  K  L  I  I  S  I  L  A  H  R  N  A  A  Q  R  K  L  I  R  Q  T  Y  A  E  T  F  G  E  D  L  L  K  E  L  D  R  E  L  T  H  D  F  E  :  K  L  V  V  V  W  T  L  D  P  A  E  R  D  A  Y  L  A  K  E  A  T  K  R  W  T  K  S  N  F  V  L  V  E  I  A  C  T  R  S  P  K  E  L  V  L  A  R  E  A  Y  H  A  R  N  K  K  S  L  E  E  D  V  A  Y  H  T  T  G  D  H  R  K  :  L  L  V  P  L  V  S  S  Y  R  Y  G  G  D  E  V  D  L  R  L  A  K  A  E  S  K  V  L  H  E  K  I  S  D  K  A  Y  S  D  D  E  V  I  R  I  L  A  T  R  S  K  A  Q  L  N  A  T  L  N  H  Y  K  D  E  Y  G  E  D  I  L  K  :  Q  L  E  D  E  D  E  F  V  A  L  L  R  A  T  I  K  G  L  V  Y  P  E  H  Y  F  V  E  V  L  R  D  A  I  N  R  R  G  T  E  E  D  H  L  T  R  V  I  A  T  R  A  E  V  D  L  K  T  I  A  N  E  Y  Q  K  R  D  S  V  P  L  G  R  A  I  A  K  D  T  G  G  D  Y  E  N  M  L  V  A  L  L  G  Q  E  E  E  *  E  A  D  W  L  T  S  V  L  *  *  P  E  *  I  C  H  S  P  I  Y  F  R  V  G  M  C  L  M  I  E  C  G  L  F  H  M  S  F  *  S  F  S  S  C  E  K  L  *  I  *  I  F  V  L  S  K  N  V  L  *  *  F  A  S  T  T  I  I  F  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52134" stop="52284"/>
                    <exon start="52486" stop="52631"/>
                    <exon start="53014" stop="53232"/>
                    <exon start="53578" stop="53790"/>
                    <exon start="53901" stop="54191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPTHHPAFSSLDNHILLLPTQRRRKMASLTVPAEVPSVAEDCEQLRSAFKGWGTNEKLIISILAHRNAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVVVWTLDPAERDAYLAKEATKRWTKSNFVLVEIACTRSPKELVLAREAYHARNKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGDEVDLRLAKAESKVLHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEYGEDILKQLEDEDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKTIANEYQKRDSVPLGRAIAKDTGGDYENMLVALLGQEEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52150" e_stop="52284"/>
            <exon e_start="52486" e_stop="53064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52150" e_stop="52284" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="52486" e_stop="53064" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52150" stop="52284"/>
              <exon start="52486" stop="53064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG : GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</gDNA_template>
            <first_frame> L  H  F  R  V  L  T  I  I  S  S  S  C  P  H  R  E  E  E  K  W  Q  V  L  Q  F  R  Q  K  F  L  Q  S  L  K  T  V  N  N  S  D  L  P  S  K  :  D  G  E  R  M  R  S  *  L  Y  Q  F  W  L  I  E  M  R  L  N  A  N  *  F  D  R  L  M  L  R  L  L  G  K  I  C  L  K  S  W  T  E  N  L  L  M  I  L  R  S  F  S  *  L  Q  N  N  F  *  I  L  S  *  L  F  E  F  L  S  Y  S  V  *  S  K  A  D  L  *  C  K  I  Y  I  Y  T  L  S  V  *  *  N  H  A  N  S  E  P  D  T  L  D  H  G  F  N  F  D  F  I  R  D  R  S  M  K  N  M  Y  *  Y  V  K  I  *  K  C  V  H  I  *  *  N  H  T  C  F  E  F  T  D  S  R  S  W  I  C  L  L  T  F  *  S  Y  V  N  F  D  Q  K  *  *  P  T  L  V  L  V  F  S  L  E  C  F  S  Q  K  L  V  V  V  W  T  L  D  P  A  E  R  D  A  Y  L </first_frame>
            <second_frame>  C  I  F  E  S  *  Q  S  Y  P  P  P  A  H  T  E  K  K  K  N  G  K  S  Y  S  S  G  R  S  S  F  S  R  *  R  L  *  T  T  P  I  C  L  Q  R :   M  G  N  E  *  E  V  D  Y  I  N  F  G  S  *  K  C  G  S  T  Q  I  D  S  T  D  L  C  *  D  F  W  G  R  S  A  *  R  V  G  Q  R  T  Y  S  *  F  *  G  H  F  H  N  Y  R  I  I  F  E  F  L  V  D  Y  L  S  F  *  V  T  L  C  D  Q  R  Q  I  Y  D  V  K  Y  I  Y  T  H  Y  P  Y  S  K  T  M  L  I  L  N  P  I  L  *  I  M  D  S  T  S  I  L  S  E  T  D  L  *  K  I  C  I  S  M  S  K  Y  E  N  V  Y  I  Y  N  K  I  I  R  V  L  N  S  L  T  R  D  P  G  F  A  F  *  L  F  D  R  M  *  T  L  I  R  N  D  N  Q  H  L  Y  L  C  F  L  L  N  V  S  R  R  N  W  W  *  Y  G  H  W  I  L  Q  N  V  M  P  I   </second_frame>
            <third_frame>   A  F  S  S  L  D  N  H  I  L  L  L  P  T  Q  R  R  R  K  M  A  S  L  T  V  P  A  E  V  P  S  V  A  E  D  C  E  Q  L  R  S  A  F  K   : G  W  G  T  N  E  K  L  I  I  S  I  L  A  H  R  N  A  A  Q  R  K  L  I  R  Q  T  Y  A  E  T  F  G  E  D  L  L  K  E  L  D  R  E  L  T  H  D  F  E  V  I  F  I  I  T  E  *  F  L  N  S  *  L  I  I  *  V  S  E  L  L  C  V  I  K  G  R  S  M  M  *  N  I  Y  I  H  I  I  R  I  V  K  P  C  *  F  *  T  R  Y  S  R  S  W  I  Q  L  R  F  Y  Q  R  Q  I  Y  E  K  Y  V  L  V  C  Q  N  M  K  M  C  T  Y  I  I  K  S  Y  V  F  *  I  H  *  L  E  I  L  D  L  P  F  D  F  L  I  V  C  E  L  *  S  E  M  I  T  N  T  C  T  C  V  F  S  *  M  F  L  A  E  I  G  G  S  M  D  T  G  S  C  R  T  *  C  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52152" stop="52284"/>
                    <exon start="52486" stop="52655"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFSSLDNHILLLPTQRRRKMASLTVPAEVPSVAEDCEQLRSAFKGWGTNEKLIISILAHRNAAQRKLIRQTYAETFGEDLLKELDRELTHDFEVIFIITE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 155 chains have been computed
$ 
$ memory statistics:
$ 274392 bytes spliced alignments in total
$ 111 spliced alignments have been stored
$ 2472 bytes was the average size of a spliced alignment
$ 19368 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1936 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 175 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 05:26:16
-->
