<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 22:56:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377799" ref_strand="+" ref_description="SGN-E377799 [TUS-21-P17](-)">
      <seq>ttttgtccttattaaatatggttaaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatttaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatttactacaatttgtgcgggtttggttatgattcattattggtccagctatttaatctgttttggcccaaacaaattgggttgggttgaaataaggttcggttcatttattattttgatccgtctaaatgtaattcaatctgttcaattgccggtcttattatgattatgggcgaactaatgtctatccctaccgaaagctgttaggtttgctacgcataaagttgggacgtttataattttttctgtctttttattgtctggcctatccaattgaagaatttcgacatatatatatcttatcggtgaagaattcgtcacatttggtgtttacaataataaaccatatattttttcaatgttcacagatttgtgtctaacaataataatcatagtttggtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3275" stop="2054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2975" g_stop="2358" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="641"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E377799" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2975" e_stop="2358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAGAGTTGGGACGTTTATAATTTCTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</genome_strand>
        <mrna_strand>TTTTGTCCTTATTAAATATGGTTAAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATTTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATTTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATTTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAAAGTTGGGACGTTTATAATTTTTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235539" ref_strand="+" ref_description="SGN-E235539 [cLED-11-N15]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaatttgtgcgggtttggttatgattcattattggtccagctatctaatctgttttggcccaaacaaattgggttgggttgaaataaggttcggttcatttattattttgatccgtctaaatgtaattcaatctgttcaattgccggtcttattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2597" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E235539" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATG</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377800" ref_strand="+" ref_description="SGN-E377800 [TUS-21-P17]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaatttgtgcgggtttggttatgattcattattggtccagctatctaatctgttttggcccaaacaaattgggttgggttgaaataaggttcggttcatttattattttgatccgtctaaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2629" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E377800" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTA</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242493" ref_strand="+" ref_description="SGN-E242493 [cLED-30-M19]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaatttgtgcgggtttggttatgattcattattggtccagctatctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2703" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E242493" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCT</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240640" ref_strand="+" ref_description="SGN-E240640 [cLED-21-L14]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2750" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E240640" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAAT</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242980" ref_strand="+" ref_description="SGN-E242980 [cLED-31-J6]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2751" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E242980" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAA</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240540" ref_strand="+" ref_description="SGN-E240540 [cLED-21-M13]">
      <seq>aattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagctctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagtttaatgagagtatgataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3525" stop="2595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3225" g_stop="2895" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E240540" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3225" e_stop="2895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGA</genome_strand>
        <mrna_strand>AATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGCTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTTAATGAGAGTATGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745545" ref_strand="+" ref_description="SGN-E745545 [GI|47105909]">
      <seq>atagctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggtaactgatcacattaatatttggatggtagcctatgttgctgttgttcacactgatatttggtcacaggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactctaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaattactgaagtcgcactaggttaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccctgagaaggtgttagctgtgatcatctttaagatgaaaggaatccgcatgtagtgtagcagttgaagttgattccaggatgagatttgttatgccgagtaaagatttcgatataagatctaatctcaatgagttccaagggtagtggtttgaccataaagatcttgcagacttaattctttattcatcttaaaatgaacaaataatattaaatttcccaatcactaataccttgttctagtgtctatttgctttatggtcttgaaagtgttcttcaagtacatagcacacccccatacagtgcatgatttcatgcttatacttgtgaagttctagctgatatctgtagatctgttgttgctgttggctgattgcttatcaaactgatcctgctttttggtgttgatggtttgcttgatgtgtttaattggatcctctgcacgtgccttctgaaggagcttaagctgtgtgtttatgatgtgctgactgccatgtctcctctggtatgcaccaatctgggttctttttcatcgagatgtgtgcacattatcaatttggagatttgatcgattcctgtgagatgtttaatttatcgaacataaccttctttgattacatcttcaagtgtctggaatttgtgtccctggacagcggttaaattacctcatttaggtgttccccatacagaatttgtgtcctctcatatgagtcttgttcgtatgtgcttgttaccatattgaacaatctctttttgctaaatggctgagtttgacttgtttggagaggaagttggggaaggtaactagatataaatttggtcttttacttgttacgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9372" stop="2976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9072" g_stop="8940" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="212" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7731" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="428" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="500" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="710" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="897" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="1031" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4528" g_stop="3279" g_length="1250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1032" r_stop="2281" r_length="1250" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2282" polyA_stop="2298"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E745545" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2281</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9072" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="3279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGAA</genome_strand>
        <mrna_strand>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCTAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246003" ref_strand="+" ref_description="SGN-E246003 [cLEF-54-K10]">
      <seq>caatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaattactgaagtcgcactaggttaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccctgagaaggtgttagctgtgatcatctttaagatgaaaggaatccgcatgtagtgtagcagttgaagttgattccaggatgagatttgttatgccgagtaaagatttcgatataagatctaatctcaatgagttccaagggtagtggtttgaccataaacatcttgcagacttaattctttattcatcttaaaatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="4812" stop="3614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4512" g_stop="3914" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E246003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4512" e_stop="3914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</genome_strand>
        <mrna_strand>CAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAACATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693051" ref_strand="+" ref_description="SGN-E693051 [LH_Ea10F01]">
      <seq>catttgtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatcctttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagctgctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtgttagctgtgatcatttttaagatgaaaggaatccgcatgtagtgtagcagttgaagttgattccagggtgagatttgttatgccgagtaaagatttcgatataagatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5618" stop="3693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5323" g_stop="5261" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5165" g_stop="4982" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="247" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="381" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4528" g_stop="4212" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="698" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4211" i_stop="4106" i_length="106">
            <donor d_prob="0.606" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4105" g_stop="3993" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="811" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E693051" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5323" e_stop="5261"/>
          <exon e_start="5165" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="4212"/>
          <exon e_start="4105" e_stop="3993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTA</genome_strand>
        <mrna_strand>CATTTGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG...............................................................................................TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATCCTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCTGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCG..........................................................................................................GTGTTAGCTGTGATCATTTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGGTGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728563" ref_strand="+" ref_description="SGN-E728563 [LA18AH07]">
      <seq>gattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaatttactgagtcgcactagggtaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5748" stop="3813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5448" g_stop="5261" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="375" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="509" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4528" g_stop="4113" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="925" r_length="416" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E728563" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5448" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="4113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAA-TTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCC</genome_strand>
        <mrna_strand>GATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTTACTG-AGTCGCACTAGGGTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591522" ref_strand="-" ref_description="SGN-E591522 [45236]">
      <seq>cacaaaggtcgtggggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccacgaagaacaactcctcctagggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagtatatcaccgcggggtagacgtgctggttcccgcagccccttgccacgttctgatgctgatgattaaggagcaagggaggaggccacagttgtaatctggctttggtcaatgctgcgtatcaggacattcccaagtgaatgatcctttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtccgtgaaaagtcaatgtggctgaatcacaagatgatgcagcagctgttgatgctgttatatttgctgttggttgtatttttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctgttgacaaattacattttctatacaaatgttcaggatgctcatgatcggtaaggataagaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5625" stop="3899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5325" g_stop="5261" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="253" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="388" r_length="135" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4528" g_stop="4193" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="724" r_length="336" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E591522" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591522" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5325" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="4193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGGTCGT-GGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGA-GCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGT-CGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCA</genome_strand>
        <mrna_strand>CACAAAGGTCGTGGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCGCGGGGTAGACGTGCTGGTTCCCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTAAGGAGCAAGGGAGGAGGCCACAGTTGTAATCTGGCTTTGGTCAATGCTGCGTATCAGGACATTCCCAAGTGAATGATCCTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCCGTGAAAAGTCAATGTGGCTGAATCACAAGATGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTATTTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGTTGACAAATTACATTTTCTATACAAATGTTCAGGATGCTCATGATCGGTAAGGATAAG-AATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235741" ref_strand="+" ref_description="SGN-E235741 [cLED-15-P4]">
      <seq>atcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgntatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5154" stop="4079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4854" g_stop="4777" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4528" g_stop="4379" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="228" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E235741" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4854" e_stop="4777"/>
          <exon e_start="4528" e_stop="4379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCT</genome_strand>
        <mrna_strand>ATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGNTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586113" ref_strand="-" ref_description="SGN-E586113 [60162]">
      <seq>agggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagtatatcaccgcggggtagacgtgctggttcccgcagccccttgccacgttctgatgctgatgattaaggagcaagggaggaggccacagttgtaatctggctttggtcaatgctgcgtatcaggacattcccaagtgaatgatcctttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttaaccagaacttcttttgatgttacctctgcattctggtattatggaaaggtgttgtgatattaagatttctactgttggtttataattatgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5398" stop="4356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5098" g_stop="4982" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4910" g_stop="4656" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="373" r_length="256" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E586113" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586113" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5098" e_stop="4982"/>
          <exon e_start="4910" e_stop="4656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGA-GCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTG</genome_strand>
        <mrna_strand>AGGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCGCGGGGTAGACGTGCTGGTTCCCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTAAGGAGCAAGGGAGGAGGCCACAGTTGTAATCTGGCTTTGGTCAATGCTGCGTATCAGGACATTCCCAAGTGAATGATCCTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACCTCTGCATTCTGGTATTATGGAAAGGTGTTGTGATATTAAGATTTCTACTGTTGGTTTATAATTATGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559909" ref_strand="-" ref_description="SGN-E559909 [19480]">
      <seq>tcatagggacaaggattctagaaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtacccgttggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccacgaagaacaactcctcctagggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagtatatcaccgcggggtagacgtgctggttcccgcagccccttgccacgttctgatgctgatgattaaggagcaagggaggaggccacagttgtaatctggctttggtcaatgctgcgtatcaggacattcccaagtgaatgatcctttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttaaccagaacttcttttgatgttacctctgcattctggtattatggaatggtgttgtgatattaagatttctactgttggtttataattaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5761" stop="4364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5461" g_stop="5261" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="391" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4663" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="640" r_length="249" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="654"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E559909" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559909" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5461" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAGGGACAAGGATTCTAG-AAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTAC-CGT-GGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGA-GCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTAC</genome_strand>
        <mrna_strand>TCATAGGGACAAGGATTCTAGAAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCCGTTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCGCGGGGTAGACGTGCTGGTTCCCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTAAGGAGCAAGGGAGGAGGCCACAGTTGTAATCTGGCTTTGGTCAATGCTGCGTATCAGGACATTCCCAAGTGAATGATCCTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACCTCTGCATTCTGGTATTATGGAATGGTGTTGTGATATTAAGATTTCTACTGTTGGTTTATAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552840" ref_strand="+" ref_description="SGN-E552840 [cTSB-5-D17]">
      <seq>ggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttaaccagaacttcttttgatgttacatctgcattctggtattatggaatggttttgtgatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8201" stop="4387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7901" g_stop="7867" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="102" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="174" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="384" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="571" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4910" g_stop="4681" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="801" r_length="230" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E552840" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7901" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAA</genome_strand>
        <mrna_strand>GGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584850" ref_strand="-" ref_description="SGN-E584850 [10771]">
      <seq>cgtgggagaggtagatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccacgaagaacaactcctcctagggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagtatatcaccgcggggtagacgtgctggaatcccgcagccccttgccacgttctgatgctgatgattaaggagcaagggaggaggccacagttgtaatctggctttggtcaatgctgcgtatcaggacattcccaagtgaatgatcctttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttcaccagaacttcatttgatgtgacctctgcattctggtattatggaaaggtgttgtgataaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5616" stop="4393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5316" g_stop="5261" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="244" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4687" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="469" r_length="225" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E584850" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584850" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5316" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGG-TTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGA-GCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGA</genome_strand>
        <mrna_strand>CGTGGGAGAGGTAGATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCGCGGGGTAGACGTGCTGGAATCCCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTAAGGAGCAAGGGAGGAGGCCACAGTTGTAATCTGGCTTTGGTCAATGCTGCGTATCAGGACATTCCCAAGTGAATGATCCTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTCACCAGAACTTCATTTGATGTGACCTCTGCATTCTGGTATTATGGAAAGGTGTTGTGATAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215636" ref_strand="+" ref_description="SGN-E215636 [cLEL-15-K11](-)">
      <seq>ccgaagtcggtctcatggaaaaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttaaccagaacttcttttgatgttacatctgcattctggtattatggaatggttttgtgatattaagattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5581" stop="4381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5281" g_stop="5261" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="208" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4688" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="431" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="451"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E215636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5281" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAG</genome_strand>
        <mrna_strand>CCGAAGTCGGTCTCATGGAAA............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589866" ref_strand="-" ref_description="SGN-E589866 [43450]">
      <seq>gatgaggctcaaaaggcagtggaaaagcttgatggaagattgttagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccacgaagaacaactcctcctagggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagtatatcaccgcggggtagacgtgctggttcccgcagccccttgccacgttctgatgctgatgattaaggagcaagggaggaggccacagttgtaatctggctttggtcaatgctgcgtatcaggacattcccaagtgaatgatcctttcatctgtattctgcttgctagaactggttggccagacttatttataaggtttaacttctttttgttgtacttaaccagaacttcttttgatgttacctctgcattctggtattatggaatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8200" stop="4402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7900" g_stop="7867" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="101" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="173" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="383" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="570" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4910" g_stop="4701" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="781" r_length="211" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E589866" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589866" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7900" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGA-GCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTT</genome_strand>
        <mrna_strand>GATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGATTGTTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCGCGGGGTAGACGTGCTGGTTCCCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTAAGGAGCAAGGGAGGAGGCCACAGTTGTAATCTGGCTTTGGTCAATGCTGCGTATCAGGACATTCCCAAGTGAATGATCCTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACCTCTGCATTCTGGTATTATGGAATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580092" ref_strand="+" ref_description="SGN-E580092 [5335]">
      <seq>gatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagcctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccgacggaagaacaactcctcctagggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagtatatcaccgggggtagacgtgctggttcccgcagccccttgccacgttctgatgctgatgattaaggagcaagggaggaggccacagttgtaatctggctttggtcaatgctgcgtatcaggacattcccaagtgaatgatcctttcatctgtattctcgcttggctaggaactggttggccagacttatttataaggtttaccttctttgagtcgtacttaaccaggaacttgcttttgatgttacctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5688" stop="4422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5388" g_stop="5261" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="315" r_length="188" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4910" g_stop="4722" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="510" r_length="195" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E580092" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5388" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCC-AC-GAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGA-GCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCT-GCTT-GCTA-GAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCA-GAACTT-CTTTTGATGTTACATCTGCA</genome_strand>
        <mrna_strand>GATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAG-CCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCGACGGAAGAACAACTCCTCCTAGGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACC-GGGGGTAGACGTGCTGGTTCCCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTAAGGAGCAAGGGAGGAGGCCACAGTTGTAATCTGGCTTTGGTCAATGCTGCGTATCAGGACATTCCCAAGTGAATGATCCTTTCATCTGTATTCTCGCTTGGCTAGGAACTGGTTGGCCAGACTTATTTATAAGGTTTACCTTCTTTGAGTCGTACTTAACCAGGAACTTGCTTTTGATGTTACCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584203" ref_strand="+" ref_description="SGN-E584203 [10024]">
      <seq>cccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccacgaagaacaactcctcctagggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagtatatcaccgcggggtagacgtgctggttcccgcagccccttgccacgttctgatgctgatgattaaggagcaagggaggaggccacagttgtaatctggctttggtcaatgctgcgtatcaggacattcccaagtgaatgatcctttcatctgtattctgcttgctagaactggttggccagacttatttataacggtttaacttcttttagttgtacttaaccaagaacttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="7826" stop="4438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7748" g_stop="7731" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="90" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="300" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="487" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4910" g_stop="4738" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="663" r_length="176" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E584203" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7748" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGA-GCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAA-GGTTTAACTTCTTTTTGTTGTACTTAACC-AGAACTTCTTT</genome_strand>
        <mrna_strand>CCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCGCGGGGTAGACGTGCTGGTTCCCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTAAGGAGCAAGGGAGGAGGCCACAGTTGTAATCTGGCTTTGGTCAATGCTGCGTATCAGGACATTCCCAAGTGAATGATCCTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAACGGTTTAACTTCTTTTAGTTGTACTTAACCAAGAACTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703017" ref_strand="+" ref_description="SGN-E703017 [FA20BD01]">
      <seq>ctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagntgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactgggtggccagacttattttataggtttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9368" stop="4469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9068" g_stop="8940" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="208" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="288" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="355" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="427" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="637" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5165" g_stop="4982" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="821" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4769" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="963" r_length="142" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E703017" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>963</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9068" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5165" e_stop="4982"/>
          <exon e_start="4910" e_stop="4769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACT</genome_strand>
        <mrna_strand>CTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG...............................................................................................TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGNTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGGTGGCCAGACTTATTTTATAGGTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345865" ref_strand="+" ref_description="SGN-E345865 [cTOF-24-O11]">
      <seq>tcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagatgtaatctggctctggatgatgctgcgtatcangacattcctaagtgaatgatactgtcatctgtattctgcttgctagaactggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8204" stop="4494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7904" g_stop="7867" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="105" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="177" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="387" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="574" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4910" g_stop="4794" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="691" r_length="117" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E345865" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7904" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGG</genome_strand>
        <mrna_strand>TCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGATGTAATCTGGCTCTGGATGATGCTGCGTATCANGACATTCCTAAGTGAATGATACTGTCATCTGTATTCTGCTTGCTAGAACTGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704174" ref_strand="+" ref_description="SGN-E704174 [FA23CC02]">
      <seq>cattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacatttcctagtgaatgatancttcatctgtattctgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9355" stop="4506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9055" g_stop="8940" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="195" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="275" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="414" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="624" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="811" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4806" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="916" r_length="105" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E704174" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9055" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCT</genome_strand>
        <mrna_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTTCCTAGTGAATGATANCTTCATCTGTATTCTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730681" ref_strand="+" ref_description="SGN-E730681 [LA24DD09]">
      <seq>cttctctccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaacgagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggntgatgctgcgtatcaggacatccctaagtgaatgatactttcatctggattctgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9335" stop="4506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9035" g_stop="8940" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="175" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="255" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="322" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="394" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="604" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="791" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4806" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="896" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E730681" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9035" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCT</genome_strand>
        <mrna_strand>CTTCTCTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAACGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGNTGATGCTGCGTATCAGGACATCCCTAAGTGAATGATACTTTCATCTGGATTCTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703652" ref_strand="+" ref_description="SGN-E703652 [FA22AD05]">
      <seq>cattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggaagcaagggaggagccacagttgtaatctggctttgggtgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtaatctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9355" stop="4508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9055" g_stop="8940" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="195" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="275" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="414" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="624" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="811" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4808" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="915" r_length="104" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E703652" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9055" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGG-AGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTG</genome_strand>
        <mrna_strand>CATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGGTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTAATCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701148" ref_strand="+" ref_description="SGN-E701148 [FA15AF08]">
      <seq>cggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9320" stop="4520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9020" g_stop="8940" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="160" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="240" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="307" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="379" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="589" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="776" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4820" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="867" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E701148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9020" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</genome_strand>
        <mrna_strand>CGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246064" ref_strand="+" ref_description="SGN-E246064 [cLEF-54-O4]">
      <seq>aggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcctagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8202" stop="4520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7902" g_stop="7867" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="103" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="175" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="385" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="572" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4910" g_stop="4820" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="663" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E246064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7902" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</genome_strand>
        <mrna_strand>AGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727416" ref_strand="+" ref_description="SGN-E727416 [LA14CE08]">
      <seq>atatagctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaagagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagggaatgatactttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9374" stop="4523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9074" g_stop="8940" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="214" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="294" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="643" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="830" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4823" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="918" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E727416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9074" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCA</genome_strand>
        <mrna_strand>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAAGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGGGAATGATACTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709367" ref_strand="+" ref_description="SGN-E709367 [FA51CG07]">
      <seq>cgctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagacgtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaacctccaaagagtatatcacctcggggtagacgtgctggttctcccagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9119" stop="4556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8821" g_stop="8765" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="137" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="204" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="276" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="486" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="674" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4910" g_stop="4856" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="729" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E709367" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8821" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAA-CTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCG</genome_strand>
        <mrna_strand>CGCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGACGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACCTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCCCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699243" ref_strand="+" ref_description="SGN-E699243 [FA09BA02]">
      <seq>tatccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9359" stop="4681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9059" g_stop="8940" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="199" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="279" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="346" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="418" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="628" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="815" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4903" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="823" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E699243" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9059" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGG</genome_strand>
        <mrna_strand>TATCCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698763" ref_strand="+" ref_description="SGN-E698763 [FA07CA11]">
      <seq>cccttaaggttcattaaccttatctgtcttcactccggcgacctgcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9353" stop="4681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9062" g_stop="8940" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="202" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="282" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="349" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="421" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="631" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="818" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E698763" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9062" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</genome_strand>
        <mrna_strand>CCCTTAAGGTTCATTAACCTTATCTGTCTTCACTCCGGCGACCTGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459471" ref_strand="+" ref_description="SGN-E459471 [cPRO-27-P18]">
      <seq>atcaaccttatcagtcttcactccggcgaacggcgatgtctcacttcggtagatcaggccctccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtatggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagtcgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaaaactcctcctanggatgctagtccggatggacgtaatcacaaggaccggtctccaactccaaagagatatcacgncggggtagacgtgctggttcccgcagccccnttgcacgttctgatgctgatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9350" stop="4681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9050" g_stop="8940" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="190" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="270" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="337" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="409" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="619" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="804" r_length="185" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E459471" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9050" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</genome_strand>
        <mrna_strand>ATCAACCTTATCAGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCTCCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTATGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGTCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAA-AACTCCTCCTANGGATGCTAGTCCGGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAG-ATATCACGNCGGGGTAGACGTGCTGGTTCCCGCAGCCCCNTTGCACGTTCTGATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705922" ref_strand="+" ref_description="SGN-E705922 [FA28CA12]">
      <seq>ctaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9324" stop="4678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9024" g_stop="8940" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="164" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="244" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="311" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="383" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="593" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="780" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E705922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9024" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</genome_strand>
        <mrna_strand>CTAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474195" ref_strand="+" ref_description="SGN-E474195 [cSTB-35-B14]">
      <seq>gtttttgtgatcagtgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagatataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgacgaggacaggcgcagccgaagtctgtctcatggaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaataactcctcctagggatgctagtccggatggacgaaatcacaaggaccggtctccaactccaaagagtatatcaccgcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="7831" stop="4727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7531" g_stop="7446" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="296" r_length="210" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5165" g_stop="5027" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="435" r_length="139" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E474195" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7531" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5165" e_stop="5027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGT</genome_strand>
        <mrna_strand>GTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGATATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGACGAGGACAGGCGCAGCCGAAGTCTGTCTCATGGAAG...............................................................................................TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAATAACTCCTCCTAGGGATGCTAGTCCGGATGGACGAAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCGCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711084" ref_strand="+" ref_description="SGN-E711084 [FA57DH05]">
      <seq>attcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattccctccccgcccccccccattagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatccacaaggaccggtctccaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9354" stop="4750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9054" g_stop="8940" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="194" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="274" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="341" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="413" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="624" r_length="211" r_score="0.924"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5050" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="744" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E711084" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9054" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATT-CTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAAT-CACAAGGACCGGTCTCCAACTC</genome_strand>
        <mrna_strand>ATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCCCTCCCCGCCCCCCCCCATTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCCACAAGGACCGGTCTCCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689260" ref_strand="+" ref_description="SGN-E689260 [t3_tus_80_M12]">
      <seq>cgattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaagctttagccggtacctgcactgttaggtagaaggatgcaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggaacccttctccacaaagaacaactcctcctagggatgctagtccaaatggacgtaatcacaaggaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9356" stop="4761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9056" g_stop="8940" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="196" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8183" g_stop="8145" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="235" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198">
            <donor d_prob="0.267" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="315" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="382" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="454" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="664" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5168" g_stop="5061" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="772" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E689260" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9056" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="8183" e_stop="8145"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCG</genome_strand>
        <mrna_strand>CGATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG......................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAACCCTTCTCCACAAAGAACAACTCCTCCTAGGGATGCTAGTCCAAATGGACGTAATCACAAGGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584364" ref_strand="+" ref_description="SGN-E584364 [10189]">
      <seq>aaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccacgaagaacaactcctcctagggatgctagtccggatggacgtaatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="7826" stop="4768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7745" g_stop="7731" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="87" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="297" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5168" g_stop="5068" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="398" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E584364" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7745" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACA</genome_strand>
        <mrna_strand>AAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAGTCCGGATGGACGTAATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455890" ref_strand="+" ref_description="SGN-E455890 [cSTS-27-L12]">
      <seq>atcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtatggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagtcgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaagagcccttctncacgaagaacaactcctcctanggatgctagtccggatggacgtaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9282" stop="4770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8982" g_stop="8940" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="122" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="202" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="269" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="341" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="551" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5070" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="650" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E455890" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8982" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCA</genome_strand>
        <mrna_strand>ATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTATGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGTCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAAGAGCCCTTCTNCACGAAGAACAACTCCTCCTANGGATGCTAGTCCGGATGGACGTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584273" ref_strand="+" ref_description="SGN-E584273 [10096]">
      <seq>gccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagcccccagtccaaggaaggagcccttctccacgaagaacaactcctcctagggatgctaagtccggatggaacgtaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="5732" stop="4770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5432" g_stop="5261" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5168" g_stop="5070" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="275" r_length="103" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E584273" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5432" e_stop="5261"/>
          <exon e_start="5168" e_stop="5070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAG-CCCCAGTCC-TCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCT-AGTCCAGATGG-ACGTAATCA</genome_strand>
        <mrna_strand>GCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCCAGTCCAAGGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCTAGGGATGCTAAGTCCGGATGGAACGTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585466" ref_strand="+" ref_description="SGN-E585466 [67926]">
      <seq>cttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcacagggacaaggattctagaaggagaagccgaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtccaagaaggagcccttctccacgaagaacaantcctcctagggatgctagtccggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9307" stop="4779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9007" g_stop="8940" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="147" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="227" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="294" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="366" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="570" r_length="204" r_score="0.957"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5079" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="660" r_length="90" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E585466" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9007" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGG</genome_strand>
        <mrna_strand>CTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCACAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGT---A--A-GGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAANTCCTCCTAGGGATGCTAGTCCGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569864" ref_strand="+" ref_description="SGN-E569864 [14359]">
      <seq>ccggacatcaaagacacctactctctgctcggttctcaacggttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtatggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctagaccaagggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagncctgattaccacaaaggtcgtgggacgaggtaaatatgatgaggacaggcgcagtcgaagtcggtctcatgggaagaagtgcctcccctggctcggccgtagccccagtcctccgaaggagcccttctccacgaagaacaatcctccctagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9288" stop="4793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8988" g_stop="8940" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="130" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="210" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="277" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="349" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="562" r_length="213" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.94"/>
            <acceptor a_prob="0.823" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5093" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="641" r_length="79" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E569864" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8988" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGACATCAAAGACACCTACTCTCTGCTC-GTTCTCAAC-GTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAG-GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGA-GAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCAT-GGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCT-GCTC-GCCGTAGCCCCAGTCCT-CGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCC-AGGGAT</genome_strand>
        <mrna_strand>CCGGACATCAAAGACACCTACTCTCTGCTCGGTTCTCAACGGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTATGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGNCCTGATTACCACAAAGGTCGTGGGACGAGGTAAATATGATGAGGACAGGCGCAGTCGAAGTCGGTCTCATGGGAAG............................................................................................AAGTGCCTCCCCTGGCTCGGCCGTAGCCCCAGTCCTCCGAAGGAGCCCTTCTCCACGAAGAACAA-TCCTCCCTAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558170" ref_strand="+" ref_description="SGN-E558170 [17467]">
      <seq>ctccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactccctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagcgaagtcggtctcatggaagaagtgcctcccctgctcgccgtatccccagtccaagaaggagcccttctccacgaagaacaatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9330" stop="4801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9030" g_stop="8940" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="170" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="250" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="317" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="389" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="598" r_length="209" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5101" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="665" r_length="67" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E558170" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9030" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTC</genome_strand>
        <mrna_strand>CTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCCCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAG-CGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTATCCCCAGTCCAAGAAGGAGCCCTTCTCCACGAAGAACAA-TCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461801" ref_strand="+" ref_description="SGN-E461801 [cPRO-9-J23]">
      <seq>cgatgtctcacttcggtagatcaggaccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgttacaaatatcaggacgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaagagcccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9317" stop="4819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9017" g_stop="8940" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="157" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="237" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="304" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="376" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="586" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5119" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="636" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E461801" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9017" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTC</genome_strand>
        <mrna_strand>CGATGTCTCACTTCGGTAGATCAGGACCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGTTACAAATATCAGGACGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAAGAGCCCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447813" ref_strand="+" ref_description="SGN-E447813 [cSTS-3-A23]">
      <seq>tgcggcgacgtctcaccttcggtagctcaggccctccggaaccaaagacacctacctctctgctcgttctcaacgttacttttcgtaccactgctgatgaccttgtttcctctattcgataagtattggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtatggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtaccaaaggacaaaagggaggtcaagaagccgcagtcctagaccaaggcattcgtgatcatagggaccaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgacccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattacccaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagtcgaagtcggtctatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9320" stop="4820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9022" g_stop="8940" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="165" r_length="81" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="245" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="312" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="385" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="596" r_length="211" r_score="0.943"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5120" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="645" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E447813" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9022" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGCGATGTCTCA-CTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTA-CTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGA-CTTGTTTCCTCTATTTGATAAGTA-TGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTA-CAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCA-TCGTGATCATAGGGA-CAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGA-GCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCT</genome_strand>
        <mrna_strand>TGCGGCGACGTCTCACCTTCGGTAGCTCAGGCCCTCCGGA-ACCAAAGACACCTACCTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACCTTGTTTCCTCTATTCGATAAGTATTGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTATGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACCAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCGTGATCATAGGGACCAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACC-CAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGTCGAAGTCGGTCT-ATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454615" ref_strand="+" ref_description="SGN-E454615 [cSTS-23-J18]">
      <seq>cttcactccggcgaacggcgatgtctcacttcggtagatcaggccctccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtatggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagtcgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9335" stop="4823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9035" g_stop="8940" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="175" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="255" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="322" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="394" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="604" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5123" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="650" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E454615" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9035" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCT</genome_strand>
        <mrna_strand>CTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCTCCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTATGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGTCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348910" ref_strand="+" ref_description="SGN-E348910 [cTOF-29-M13]">
      <seq>ccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctnccctgctcgccgtagccccagtcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9345" stop="4833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9045" g_stop="8940" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="185" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="332" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="404" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="614" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5133" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="650" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E348910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9045" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCG</genome_strand>
        <mrna_strand>CCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTNCCCTGCTCGCCGTAGCCCCAGTCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561746" ref_strand="+" ref_description="SGN-E561746 [18825]">
      <seq>caaccttatcagtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactccctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcangcctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9347" stop="4836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9048" g_stop="8940" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="188" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="268" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="335" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="407" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="617" r_length="210" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="5136" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="650" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E561746" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9048" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCC</genome_strand>
        <mrna_strand>CAACCTTATCAGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCCCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCANGCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402374" ref_strand="+" ref_description="SGN-E402374 [PPC-7-F3]">
      <seq>tcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagatgtaaatatgatgaggacaggcgcaaccgaagtcggcctcatggaagaagtgccctccctgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="8204" stop="4961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7904" g_stop="7867" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="105" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="177" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="387" r_length="210" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="0.94"/>
            <acceptor a_prob="0.823" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5168" g_stop="5151" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="405" r_length="18" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E402374" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7904" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCG</genome_strand>
        <mrna_strand>TCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGATGTAAATATGATGAGGACAGGCGCAACCGAAGTCGGCCTCATGGAAG............................................................................................AAGTGCCCTCCCTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304226" ref_strand="+" ref_description="SGN-E304226 [cLEX-6-L15]">
      <seq>tcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9367" stop="4961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8940" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="207" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="287" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="354" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="426" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="636" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E304226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG</genome_strand>
        <mrna_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440365" ref_strand="+" ref_description="SGN-E440365 [cSTA-16-B5]">
      <seq>ctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcacagggacaaggattctagaaggagaagccgaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacaaaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9311" stop="4963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9011" g_stop="8940" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="151" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="231" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="298" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="370" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5263" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="572" r_length="202" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E440365" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9011" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGA</genome_strand>
        <mrna_strand>CTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCACAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGT---A--A-GGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAAAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346475" ref_strand="+" ref_description="SGN-E346475 [cTOF-23-P9]">
      <seq>ttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9343" stop="4965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9043" g_stop="8940" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="183" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="263" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="330" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="402" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5265" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="608" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E346475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9043" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATG</genome_strand>
        <mrna_strand>TTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454321" ref_strand="+" ref_description="SGN-E454321 [cSTS-22-L4]">
      <seq>catcaaccttatcagtcttcactccggcgaacggcgatgtctcacttcggtagatcaggccctccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtatggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgnattaccacaaagtcgtgggagaggtaaatatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9351" stop="4995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9051" g_stop="8940" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="191" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="271" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="338" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5295" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="586" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E454321" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9051" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTG-ATTACCACAGAGGTCGTGGGAGAGGTAAATATGATG</genome_strand>
        <mrna_strand>CATCAACCTTATCAGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCTCCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTATGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGNATTACCACA-AAGTCGTGGGAGAGGTAAATATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346128" ref_strand="+" ref_description="SGN-E346128 [cTOF-34-K23]">
      <seq>ttcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgggggagaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9353" stop="5004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9053" g_stop="8940" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="193" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="273" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="340" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="412" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5304" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="579" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E346128" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9053" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTA</genome_strand>
        <mrna_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGGGGGAGAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365350" ref_strand="+" ref_description="SGN-E365350 [cLPT-2-N19]">
      <seq>gatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagttgtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgtagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9316" stop="5023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9016" g_stop="8940" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="156" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="236" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="303" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="375" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5323" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="523" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E365350" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9016" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCAC</genome_strand>
        <mrna_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTTGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGTAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564268" ref_strand="+" ref_description="SGN-E564268 [2517]">
      <seq>cggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcacagggacaaggattctagaaggagaagccgaagtagaagtagaagtaagggaaggtatgaccgtgatcagtaccgtggaagagacagagataaccgtcatcgcgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9320" stop="5046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9020" g_stop="8940" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="160" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="240" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="306" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="378" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5346" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="498" r_length="120" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E564268" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9020" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCG-GAGCA</genome_strand>
        <mrna_strand>CGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGG-CCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCACAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGT---A--A-GGGAAGGTATGACCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGCGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246119" ref_strand="+" ref_description="SGN-E246119 [cLEF-40-E20]">
      <seq>tcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9281" stop="5050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8981" g_stop="8940" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="121" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="201" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="268" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="340" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5350" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="461" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E246119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8981" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGG</genome_strand>
        <mrna_strand>TCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326371" ref_strand="+" ref_description="SGN-E326371 [cTOC-14-C7]">
      <seq>ttcattaaccttatctgtcttcactccggcgaacggcgatgtctcacgtcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaagctttagccggtacctgcactgttaggtagaaggatgcaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaggtatgagcgtgatcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9353" stop="5079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9053" g_stop="8940" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="193" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8183" g_stop="8145" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="232" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198">
            <donor d_prob="0.267" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="312" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="379" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="451" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5470" g_stop="5379" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="543" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E326371" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9053" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="8183" e_stop="8145"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACC</genome_strand>
        <mrna_strand>TTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACGTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG......................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAGGTATGAGCGTGATCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293704" ref_strand="+" ref_description="SGN-E293704 [cLET-21-H2]">
      <seq>ggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9319" stop="5079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8940" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="239" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="378" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5379" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="470" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E293704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACC</genome_strand>
        <mrna_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308152" ref_strand="+" ref_description="SGN-E308152 [cLEY-14-G14]">
      <seq>ttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaagggaaagtatgagcgtgatcagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9334" stop="5080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9034" g_stop="8940" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="174" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="254" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="321" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="393" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5380" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="484" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E308152" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9034" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTAC</genome_strand>
        <mrna_strand>TTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAAGGGAAAGTATGAGCGTGATCAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302411" ref_strand="+" ref_description="SGN-E302411 [cLEW-27-N10]">
      <seq>tcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9367" stop="5102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8940" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="207" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="287" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="354" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="426" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5402" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="495" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E302411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGG</genome_strand>
        <mrna_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283216" ref_strand="+" ref_description="SGN-E283216 [cLER-17-F22]">
      <seq>ggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9319" stop="5108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8940" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="239" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="378" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5408" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="441" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E283216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAG</genome_strand>
        <mrna_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437598" ref_strand="+" ref_description="SGN-E437598 [cSTA-4-G4]">
      <seq>catcaaccttatcagtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaagggaggtcaagaagccgcagtcctaaaccaaggcatcgtgatcacagggacaaggattctagaaggagaagccgaagtagaagtagaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9351" stop="5112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9051" g_stop="8940" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="191" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="271" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="338" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="410" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5411" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E437598" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9051" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAG</genome_strand>
        <mrna_strand>CATCAACCTTATCAGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGGAGGTCAAGAAGCCGCAGTCCTAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCACAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279641" ref_strand="+" ref_description="SGN-E279641 [cLER-5-A2]">
      <seq>ggcgatgtctcacttcggtagatcatgcccaccggacatcaaagacacctactctctgctcgttctcaacgttactttacgtaccactgctgacgacttgtttcctctatttgataagtatggaaaagtagtcgatgcctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcatgatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgcgatcatagggacacggattctagaatgagaagccgaagtagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9319" stop="5120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8940" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="239" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="378" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5420" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="429" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E279641" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAG</genome_strand>
        <mrna_strand>GGCGATGTCTCACTTCGGTAGATCATGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTAC................................................................................................GTACCACTGCTGACGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGCCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCATGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGCGATCATAGGGACACGGATTCTAGAATGAGAAGCCGAAGTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289019" ref_strand="+" ref_description="SGN-E289019 [cLES-17-F12]">
      <seq>aaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9365" stop="5143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9065" g_stop="8940" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="205" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="285" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="352" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5443" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="452" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E289019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9065" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCT</genome_strand>
        <mrna_strand>AAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338041" ref_strand="+" ref_description="SGN-E338041 [cTOE-14-D24]">
      <seq>gatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9316" stop="5144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9016" g_stop="8940" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="156" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="236" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="303" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="375" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5444" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="402" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E338041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9016" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTC</genome_strand>
        <mrna_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562927" ref_strand="+" ref_description="SGN-E562927 [1644]">
      <seq>gcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctacggctgtgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctnagggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggcccaaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggacaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9318" stop="7175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9018" g_stop="8940" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="239" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7475" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="349" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E562927" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9018" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTAC-TCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGG</genome_strand>
        <mrna_strand>GCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACGGCTGTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTNAGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCAAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGACAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259121" ref_strand="+" ref_description="SGN-E259121 [cLEG-41-D6]">
      <seq>tcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9367" stop="7200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8940" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="207" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="287" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="354" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7500" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="372" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E259121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTT</genome_strand>
        <mrna_strand>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365410" ref_strand="+" ref_description="SGN-E365410 [cLPT-2-M11]">
      <seq>gatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagttgtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9316" stop="7200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9016" g_stop="8940" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="156" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="236" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="303" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7500" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="321" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E365410" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9016" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTT</genome_strand>
        <mrna_strand>GATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTTGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370020" ref_strand="+" ref_description="SGN-E370020 [TUS-26-D16]">
      <seq>caaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagcatcacgatgaggctcaaaaagcatgggaaaagcttgatggaagagttgaactatggtctgtacatcatggttcgattcgcgaagtgcggccctaatgctgatagaattgacacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9366" stop="7542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8940" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="206" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="286" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="354" r_length="68" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E370020" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTA-GATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT</genome_strand>
        <mrna_strand>CAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGCATCACGATGAGGCTCAAAAAGCATGGGAAAAGCTTGATG.....................................................................GAAGAGTTGAACTATGGTCTGTACATCATGGTTCGATTCGCGAAGTGCGGCCCTAATGCTGATAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468310" ref_strand="+" ref_description="SGN-E468310 [cSTB-3-C10]">
      <seq>ttcaaccttatcagtcttttctccggggagcggctatgtctcacttgggtagatcaggccctccggacaccaaaaacaccacactctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgttacaaatatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9349" stop="7466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9050" g_stop="8940" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="189" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="269" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7766" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="301" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E468310" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9050" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTT</genome_strand>
        <mrna_strand>TTCAACCTTATCAGTCTTTTCTCCGGGGAGCGGCTATGTCTCACTTGGGTAGATCAGGCCCTCCGGACACCAAAAACACC-ACACTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGTTACAAATATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400095" ref_strand="+" ref_description="SGN-E400095 [cSTC-4-F10]">
      <seq>gctatgtctcacttcggttgatcaggcccgccggacattaaagacacctactccctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctattcgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaggcagtggaaaagcttgatggaagagttgtagatggtctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9318" stop="7474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9018" g_stop="8940" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="158" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="238" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7774" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="262" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E400095" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9018" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAA</genome_strand>
        <mrna_strand>GCTATGTCTCACTTCGGTTGATCAGGCCCGCCGGACATTAAAGACACCTACTCCCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAGGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584160" ref_strand="+" ref_description="SGN-E584160 [9981]">
      <seq>cagtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaatgacacctactctctgctcgttctcaacgttacttttctgtaccactgctgatgacttgtttcctctattcgataagtatggaagaagtagtcgatgtctttatccctagagaccgaatgactggagaatctaggggttttgcatttgtgcgctacaagtatcaggatgaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9339" stop="7591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9039" g_stop="8940" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="182" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7891" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="238" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E584160" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9039" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAA-GACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC-GTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAA-AAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTC</genome_strand>
        <mrna_strand>CAGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAATGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCT................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTCGATAAGTATGGAAGAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGAATCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="16729" stop="26655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25867" g_stop="26354" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25867" e_stop="26354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAGCCAATGACAAAGAAGTTTAGGAAAGTGACTTGCCTATACAAAAGGCACTTTCCTAAACACTTTTCTTTAGTTTTTGCAACTTGACAAACACTTTTCAAGAACTCTTGCAAAGACTAACACAAAGCATATGCAGAATCATTCCTAGGACAACAGCAACATCTGAAGCCTTTCGTCTAGTTGTCTAGGAATTTATTCTCTTGTTCTCAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGAGTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736175" ref_strand="+" ref_description="SGN-E736175 [LC04CE12]">
      <seq>cgcttcttttaattattagcaaatgatgatagttcccacaatttttaatttccttcagtgtattacattcttatatcttttcgcggttacatttgctaccactgaggaagcaactgctcttctaaaatggaaagcaactttccaaaaccagaacaattctttattggcttcgtggacgctaagtggacctgctggtaccaatagcattggagcggcgagttctaatgcatgtgaggactggtatggagttacatgttctaacggtagggtatacatgttgaatatgacaaatgctggtatcaatggcacactgtatgattttccattttcatcactcccttttcttggttatcttgatcttagcatcaacaacttctctggcactatcccacctgaaataggaaagctcactaatcttggctatcttgacttgtccttcaatcagatttcgggcataatcccaccacaaatcggctcattaacaaagcttgagaccctccacatctttaacagccaattatatggttccattccggaggaaataggtcacctaaggtctttgactgagctagctttgaattctaactctcttagtggttcaattcctgcttcattggggactttggacaaattgtcttatttgcatctgtatgagaaccatctttctggttccattccagcagaaatagggaaacttgtcaatctccttcaactttttcttgattcaaacaagttaactggtcatattcctccaaaaattgaaaaacttgtcaatctccttcaactttttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="26735" stop="28126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27031" g_stop="27826" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E736175" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27031" e_stop="27826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGAT</genome_strand>
        <mrna_strand>CGCTTCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAAAAATTGAAAAACTTGTCAATCTCCTTCAACTTTTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343937" ref_strand="+" ref_description="SGN-E343937 [cTOF-12-C15]">
      <seq>cttgagcaactgctccagtttcaaaagggttcgcttcaataacaacagctttactgggaatttctctgaaagcttttggcatccatcccgagctgatgttcattgatttgagcgacaatgattttcaatggcgaactcagcagcaactgggggaaatacaagaatttgactactttttggatagccagaaataacattagcggtagcataccaccagagattggaaacatcaaaggtcttttgggacttgatctttcaacaaatcatttggttgggcaaataccagaggaatttggaaaattaacctctctggttgagctctcattgaaaaacaaccaaatttctggcaatatacctcaggaacttgggtcactgacaaagttagagntcccttgatctatcagacaatagattgaatgggtcgatcccaaagtttataggagattaccagcacctgattcacttgaacctgagcaacaacaaatttggccaaaaaattccaaaggagaatagggggtataattcaactttaatgtacttgatttgagccataatctnntctggttggggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="27775" stop="37496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28075" g_stop="28640" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E343937" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28075" e_stop="28640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTATCTG-AAGCTTTTGGCATCCATCCCGAGCTGAAGTTCATTGATTTGAGCGACAATGATTTTC-ATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAGCAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAATTTAGA-CTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAG-ATA-GGGGTATAACTCATC-TTAATGTACTTGATTTGAGCCATAATCT--TCTGGTTGGAGAAAT</genome_strand>
        <mrna_strand>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTCTCTGAAAGCTTTTGGCATCCATCCCGAGCTGATGTTCATTGATTTGAGCGACAATGATTTTCAATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAACAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAAGTTAGAGNTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAAAGTTTATAGGAGATTACCAGCACCTGATTCACTTGAACCTGAGCAACAACAAATTTGGCCAAAAAATTCCAAAGGAGAATAGGGGGTATAATTCAACTTTAATGTACTTGATTTGAGCCATAATCTNNTCTGGTTGGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434258" ref_strand="+" ref_description="SGN-E434258 [STM-59-N7]">
      <seq>tcctataaaacttgggtcactgacaaagttagagtccctagatctgtcaaacaacagattgaatgggtcgatcccaacgtttataggagattaccagcacctatttcacttgaacctgagttataacaagtttggccaaaaaattccgaaggagatagggggtgtaactcaacttaatgtacttgatttgagccataatcttctggttggagaaatacctcagttaaccaatttgaaggtcttggaaagcttaaatctttcccacaacagcctttctggccacattcctgaagaatttgaaagtttgattgctttgcaggatgttgtcttgtcatacaatgagttagaaggtccaatccctaataataaagctttcatgaatgcctaattagaaggtaataaaggtctttgcggcaatgtaacaggtttcctgccatgcaaaatgccatcttctatggtgaagaagcactcaatggcgaaaggacttaaactcatcctcatcactgtacttcctgttctgggagcattagtgcttctttgttctttcgctggtgctctctttatgcgtgaccaaagaagaagagttggagacgttgaaagacgggattccattgacaaagatgatggtctgctttcaatatcctcattacatggaagttcattatactgggatatcttaaaagccacagaagagtttgatgcaacattttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="28134" stop="29438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28426" g_stop="29138" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E434258" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28426" e_stop="29138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCAGGAACTTGGGTCACTGACAAATTTAGACTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAGATA-GGGGTATAACTCATCTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAATACCCCCAGTTAACCAATTTGAAGTACTTGGTGAACTTGAATCTGTCCCACAACAGCCTTTCTGGCCACATTCCTGAAGAATTTGATAGTTTGACTGGTTTGCAGGATGTTGTATTGTCATACAACGAGTTGGAAGGGCCAATCCCTAATAATAATGCTTTTATGAATGCCTCATTAGAAGGTAATAAAGGTCTTTGTGGCAATGTGACTGGATTCCAACCTTGCGAAAGGCCATCTTCTATGGTGAAGAAGCACTCAATGGCGAAGGGACATAAACTCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGACGGGATTCCATTGACAAAGATGATGGTCTGCTTTCAATATCCTCATTACATGGAAATTCATTATACTGGGATATCTTAATAGCCACAGAGGAGTTTGATGCAACATTTTGCA</genome_strand>
        <mrna_strand>TCCTATAAAACTTGGGTCACTGACAAAGTTAGAGTCCCTAGATCTGTCAAACAACAGATTGAATGGGTCGATCCCAACGTTTATAGGAGATTACCAGCACCTATTTCACTTGAACCTGAGTTATAACAAGTTTGGCCAAAAAATTCCGAAGGAGATAGGGGGTGTAACTCAACTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAATA-CCTCAGTTAACCAATTTGAAGGTCTTGGAAAGCTTAAATCTTTCCCACAACAGCCTTTCTGGCCACATTCCTGAAGAATTTGAAAGTTTGATTGCTTTGCAGGATGTTGTCTTGTCATACAATGAGTTAGAAGGTCCAATCCCTAATAATAAAGCTTTCATGAATGCCTAATTAGAAGGTAATAAAGGTCTTTGCGGCAATGTAACAGGTTTCCTGCCATGCAAAATGCCATCTTCTATGGTGAAGAAGCACTCAATGGCGAAAGGACTTAAACTCATCCTCATCACTGTACTTCCTGTTCTGGGAGCATTAGTGCTTCTTTGTTCTTTCGCTGGTGCTCTCTTTATGCGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGACGGGATTCCATTGACAAAGATGATGGTCTGCTTTCAATATCCTCATTACATGGAAGTTCATTATACTGGGATATCTTAAAAGCCACAGAAGAGTTTGATGCAACATTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542836" ref_strand="+" ref_description="SGN-E542836 [TUS-64-F12](-)">
      <seq>aaaatgatgactaagaaaatcattatatttttgatgaaaatgtctgaaaattcatcatattgaatttgctccattccttgaaaagaatgtggtagcaacatgtgataactctgaaatccgcctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtctgaaagatgacaaataattaatgatatgaataaaggcgtggaaggacagaattataatagtcatcattgtggtaatgataaaaggaataacaatatgagttcttcaaatagtccttcaaaatgtgaagacaatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="32154" stop="30880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31854" g_stop="31180" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E542836" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31854" e_stop="31180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAATGACTAAGAAAAATAATATATTTTTGATG-AAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATATGAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCATTCTATAAGAGAATTGGTCCAGATGTGATAAAATCATTATATGTTGGATATATGCCACAACTCACCTCTATGGAAGGTTTGAGAAAAATGATA</genome_strand>
        <mrna_strand>AAAATGATGACTAAGAAAATCATTATATTTTTGATGAAAATGTCTGAAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGCCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATGATATGAATAAAGGCGTGGAAGGACAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAATAACAATATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGACAATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354965" ref_strand="+" ref_description="SGN-E354965 [cTOS-19-M24]">
      <seq>gataagacgatagattcaagttctatctcaccaaaagggtaagacatcaattagagttttgatacaccgtgattgggttcaagttccatagaattatggcgtaacacgccttacatgggtaagacattgagtttgatccaatgcataaaatgatgactaagaaaaataatatatttttgatgaaatgtctttaaattcatcatattgaatttgctccatttcttgaaaagaatatggtagcaacatgtgataactctgaaatccacctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtttgaaagatgacaaataattaatgatatagaataagggagtggagggaaagaattataatagtcatcattgtggtaatgataaaaggaagaacactatgagttcttcaaatagtccttcaaaatgtgaaggcaacttttattatcaaaatggtatgaaaggttattagacttgtcaatgttgtcaaccccataatttgacaagtttataaatcctctatcatgacacaagaagataaagtgatggtacacttcatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagccatgacaatgtgcttataatgcaaatttatgaagtacatataaataattagttcattccttgaagagaatgtgacttgtgatgagtatcgtgaatgctcgaccattctataaaagaatgggtccaaatgtgataaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="32312" stop="30935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32012" g_stop="31235" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E354965" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32012" e_stop="31235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACTGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTCTAGCCAATGCACCATAGCGATGATAAAATAATGACTAAGAAAAATAATATATTTTTGATGAAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATAT-GAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCATTCTATAAGAGAATTGGTCCAGATGTGATAAAATCATT</genome_strand>
        <mrna_strand>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTT-T-G---AT-C-CAAT-GC----ATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAACTTTTATTATCAAAATGGTATGAAAGGTTATTAGACTTGTCAATGTTGTCAACCCCATAATTTGACAAGTTTATAAATCCTCTATCATGACACAAGAAGATAAAGTGATGGTACACTTCATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGCCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAAAGAATGGGTCCAAATGTGATAAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340364" ref_strand="+" ref_description="SGN-E340364 [cTOF-2-N11]">
      <seq>tcatcctcatcactgtacttcctattctgggagcattagtgctgctttgtgctttcgctggttctctctttatgtgtgaccaaagaagaagagttggagacgttgaaagaagggatggtgatggttggctttcgatatccatgttagatgggaaggcattgtacagggacatcttaaatgccacagaagagttcgatgcaaaattttgcattgggcaaggaggtcagggaagtgtttacaaggtaaaccttccattattaggagatatagctgtgaagagacttcattcttcatttcagaatacacatcccaaaagcttcataaatgaagtaagggcattgactgggattaagcaccggaacattgtgagcctctacggctattgttcgaaagcacaacactcactcttggtttacgagtatgtggagaggggggagtttgtctagtgttttaagcaatgaagttgagtctaagaaattggattggcttaaaagggtgaatatcatcaagggtgttgcttttgctttatcttacatgcaccaggattgttcaccacccattgttcatcgagacatacgtagcagtaatgttttgcttgattctgagtatgaagctcgtgttgcagactttggaatagcaaagattctcaatccagactcgtccaattgcaccgcgcttgcaggcacatatggttatgtcgcacctgagcttgcatatacaatgaaagttacacaaatgtgtgatgtgtatagctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="37189" stop="38646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37489" g_stop="38193" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38194" i_stop="38294" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38295" g_stop="38346" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="758" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E340364" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37489" e_stop="38193"/>
          <exon e_start="38295" e_stop="38346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGA-GGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTGGTAAGTTTTAAATAGTTGATGAACTATATCCAAGCACTCCATTGTTTTCTTAATCTCATTTGATTGTTAGTATTGTTGTTGAAAATTGTATTATCATTCAGAGCTTGCATATACAATGAAGGTTACACAAATGTGTGATGTGTATAGCTTTGG</genome_strand>
        <mrna_strand>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGAGGGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTG.....................................................................................................AGCTTGCATATACAATGAAAGTTACACAAATGTGTGATGTGTATAGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736245" ref_strand="+" ref_description="SGN-E736245 [LC04DF07]">
      <seq>cgcttttaattattagcaaatgatgatagttcccacaatttttaatttccttcagtgtgttacattcttatatcttttcgcggttacatttgctaccactgaggaagcaactgctcttctaaaatggaaagcatctttccaaaaccagaacaattctttattggcttcgtggacgctaagtggacctgctggtaccaatagcattggagcggcgagttctaatgcatgcgaggactggtatggagttacatgttctaacggtagggtatacatgttgaatatgacaaatgctggtatcaatggcacactgtatgattttccattttcatcactcccttttcttggttatcttgatcttagcatcaacaacttctctggcactatcccacctgaaataggaaagctcactaatcttggctatcttgacttgtccttcaatcagatttcgggcataatcccaccacaaatcggctcattaacaaagcttgagaccctccacatctttaacagccaattatatggttccattccggaggaaataggtcacctaaggtctttgactgagctagctttgaattctaactctcttagtggttcaattcctgcttcattggggactttggacaaattgtcttatttgcatctgtatgagaaccatctttctggttccattccagcagaaatagggaaacttgtcaatctccttcaactttttcttgattcaaacaagttaactggtcatattcctccaaaaattggaaaacttgccaatctccttcaacttttttctgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="43108" stop="44501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43406" g_stop="44201" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E736245" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43406" e_stop="44201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTGTTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCATCTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGCGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCA</genome_strand>
        <mrna_strand>CGCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTGTTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCATCTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGCGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAAAAATTGGAAAACTTGCCAATCTCCTTCAACTTTTTTCTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434258" ref_strand="+" ref_description="SGN-E434258 [STM-59-N7]">
      <seq>tcctataaaacttgggtcactgacaaagttagagtccctagatctgtcaaacaacagattgaatgggtcgatcccaacgtttataggagattaccagcacctatttcacttgaacctgagttataacaagtttggccaaaaaattccgaaggagatagggggtgtaactcaacttaatgtacttgatttgagccataatcttctggttggagaaatacctcagttaaccaatttgaaggtcttggaaagcttaaatctttcccacaacagcctttctggccacattcctgaagaatttgaaagtttgattgctttgcaggatgttgtcttgtcatacaatgagttagaaggtccaatccctaataataaagctttcatgaatgcctaattagaaggtaataaaggtctttgcggcaatgtaacaggtttcctgccatgcaaaatgccatcttctatggtgaagaagcactcaatggcgaaaggacttaaactcatcctcatcactgtacttcctgttctgggagcattagtgcttctttgttctttcgctggtgctctctttatgcgtgaccaaagaagaagagttggagacgttgaaagacgggattccattgacaaagatgatggtctgctttcaatatcctcattacatggaagttcattatactgggatatcttaaaagccacagaagagtttgatgcaacattttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="36704" stop="46028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44445" g_stop="44451" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44452" i_stop="45020" i_length="569">
            <donor d_prob="0.672" d_score="0.00"/>
            <acceptor a_prob="0.289" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45021" g_stop="45729" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="713" r_length="706" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E434258" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44445" e_stop="44451"/>
          <exon e_start="45021" e_stop="45729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGGCAATTTGAGAAACTTGCAAACTTTGTTTCTCCGTGCCAACAAACTTTCTGGTTCTATACCAAAAGAACTTGCATATTTGGACAACTTGGTTGTGATAGAAATGGATGAAAATCAGTTTTCAGGCCATTTGCCTGAGAATCTTTGCCAAGGTGGGAAACTTGAGGCCTTCACAGTGAATAGTAACAAGCTGACAGGGCCAATACCAAGAAGCTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTATCTGAAGCTTTTGGTAACTATCCGGAGCTGCAGTTCATTCATTTGAGCGACAATGATTTTCATGGCGAACTCAGCAGCAACTGGGGGAAATGCAAGAATTTGACTACTTTTTGTTTAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTCGGGACTTGATCTTTCAGCAAATCATTTGGTTGGGCAAATACCGAAGGAATTTGGAAAATTAACCTCTCTGGTTGATCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAATTTAGACTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAGATAGGGGGTATAACTCATCTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAATCCCCCCCCAGTTAACCAATTTGAAGTACTTGGTGAACTTGAATCTGTCCCACAACAGCCTTTCTGGCCACATTCCTGAAGAATTTGATAGTTTGACTGGTTTGCAGTATGTTGTATTGTCATACAACGAGTTGGAAGGGCCAATCCCTAATAATAATGCTTTTATGAATGCCTCATTAGAAGGTAATAAAGGTCTTTGTGGCAATGTGACTGGATTCCAACCTTGCGAAAGGCCATCTTCTATGGTGAAGAAGCACTCAATGGCGAAGGGACATAAACTCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGACGGGATTCCATTGGCAAAGATGATGGTCTGCTTTCAATATCCTCATTACATGGAAGTTCATTATACTGGGATATCTTAAAAGCCACAGAGGAGTTTGATGCAACATTTTGCG</genome_strand>
        <mrna_strand>TCCTATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGGGTCACTGACAAAGTTAGAGTCCCTAGATCTGTCAAACAACAGATTGAATGGGTCGATCCCAACGTTTATAGGAGATTACCAGCACCTATTTCACTTGAACCTGAGTTATAACAAGTTTGGCCAAAAAATTCCGAAGGAGATAGGGGGTGTAACTCAACTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAAT---ACCTCAGTTAACCAATTTGAAGGTCTTGGAAAGCTTAAATCTTTCCCACAACAGCCTTTCTGGCCACATTCCTGAAGAATTTGAAAGTTTGATTGCTTTGCAGGATGTTGTCTTGTCATACAATGAGTTAGAAGGTCCAATCCCTAATAATAAAGCTTTCATGAATGCCTAATTAGAAGGTAATAAAGGTCTTTGCGGCAATGTAACAGGTTTCCTGCCATGCAAAATGCCATCTTCTATGGTGAAGAAGCACTCAATGGCGAAAGGACTTAAACTCATCCTCATCACTGTACTTCCTGTTCTGGGAGCATTAGTGCTTCTTTGTTCTTTCGCTGGTGCTCTCTTTATGCGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGACGGGATTCCATTGACAAAGATGATGGTCTGCTTTCAATATCCTCATTACATGGAAGTTCATTATACTGGGATATCTTAAAAGCCACAGAAGAGTTTGATGCAACATTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434259" ref_strand="-" ref_description="SGN-E434259 [STM-59-N7]">
      <seq>ttggattggcttacaagggtgaatatcatcaaaggtgttgcttatgctttattctacatgcaccacgatgcttcacccccgattgttcatcgggacatatcaagccagtaatgttttgcttgactccgagtttgaagctcgtgtttctgattttggcatagctaagattctcaagccagactcatccaattgtactgcacttgcaggcacatatggctatgtagcaccagagcttgcctatacattgaaggtgacggaaatgtgtgacgtctacagctttggagtattagcattggaggtaatcaaaggaaagcatcttggggaataccttactcttctagcaaatccatcaacaagagatgtgcagctaagcgatttgctagatgaacgccttccacatcctgaggatgaagtaaaagagtttttggttttcatcgtcaagctagcaatctcatgtttggttgaaaatccaaaatcaaggccaatgatgcacttcatctctcatatgttatcaatggatccacccaatcatcagattccatgaaagtgagattccttgaaatgtaaggtgccctggtatggaaaagattatgctcagcaccaagtggttgtgaagtaacaagtatgttgatcagaactttcacagcaaaatattattaagattagcctttctgtattgttgagttgcttatatagattacttatttcaatctgaaggtttcagagcctttgtactagaatatatacaaattgcagtatactatatactgaagttaagtaataaaagcgggttccatgttcgttaagtaaaaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="29105" stop="47194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45996" g_stop="46224" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46225" i_stop="46322" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46323" g_stop="46914" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="819" r_length="589" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E434259" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434259" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45996" e_stop="46224"/>
          <exon e_start="46323" e_stop="46914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTGGCTTACAAGGGTGAATATCATCAAAGGTGTTGCTTATGCTTTATCTTACATGCACCATGATTGCTCACCACCAATTGTTCATCGGGACATGTCAAG-CAGTAATGTTTTGCTCGACTCCGAGTTTGAAGCTTGTGTTTCAGATTTTGGCATAGCTAAGATTCTCAAGCCAGACTCATCCAATTGTACTGCACTTGCAGGCACATATGGCTATGTAGCACCAGGTAAGATGTAACTTCTTATCCTTTTTTCAGTTCATGAACTATATCTGCACACTACACTCTATATTGTTTCCATCTCATTTGCAACTTTATTGTTTCAGAGCTTGCCTACACATTGAAGGTGACGGAGATGTGTGACGTCTACAGCTTTGGAGTATTAGCATTGGAGGTAATCAAAGGAAAGCATCTTGGGGAATACCTTGCTCTTCTAGCAAATCCATCAACAAGAGATGTGCAGCTAAGCGATTTGCTAGATGAACGCCTTCCACATCCTGAGGATGAAGTAAAAGAGTTTTTGGTTTTCATCGTCAAGCTAGCAATCTCGTGTTTGGTTGAAAATCCAAAATCAAGGCCAACAATGCACTTCATTTCTCATATGTTATCAATGGATCCACCCAATCATCAGATTCCATGAAAGTGAGATTCCTCGAGATGTAAGGTGCCCTTGTATGGAAAAGGTTATGCTCGGCACCAAGTGGTTATGAAGTAGTAACAAGTTTGTTGATCAGAACTTCCATAGCAAAACATTATTAAGACTTG-CTTTTTGTATTGTTGAGTTGCTTATATAGATTACTTATTTTAACCTGAAAGATTCAGAGCCTCCGTACTAGAATATATACAAATTATAGTATACTATGTACTGATGTTAAGTAATAAAAGCAAGTTCCATGTTTTATGAGTACTACTGATGTT</genome_strand>
        <mrna_strand>TTGGATTGGCTTACAAGGGTGAATATCATCAAAGGTGTTGCTTATGCTTTATTCTACATGCACCACGATGCTTCACCCCCGATTGTTCATCGGGACATATCAAGCCAGTAATGTTTTGCTTGACTCCGAGTTTGAAGCTCGTGTTTCTGATTTTGGCATAGCTAAGATTCTCAAGCCAGACTCATCCAATTGTACTGCACTTGCAGGCACATATGGCTATGTAGCACCAG..................................................................................................AGCTTGCCTATACATTGAAGGTGACGGAAATGTGTGACGTCTACAGCTTTGGAGTATTAGCATTGGAGGTAATCAAAGGAAAGCATCTTGGGGAATACCTTACTCTTCTAGCAAATCCATCAACAAGAGATGTGCAGCTAAGCGATTTGCTAGATGAACGCCTTCCACATCCTGAGGATGAAGTAAAAGAGTTTTTGGTTTTCATCGTCAAGCTAGCAATCTCATGTTTGGTTGAAAATCCAAAATCAAGGCCAATGATGCACTTCATCTCTCATATGTTATCAATGGATCCACCCAATCATCAGATTCCATGAAAGTGAGATTCCTTGAAATGTAAGGTGCCCTGGTATGGAAAAGATTATGCTCAGCACCAAGTGGTTGTG-A--AGTAACAAGTATGTTGATCAGAACTTTCACAGCAAAATATTATTAAGATTAGCCTTTCTGTATTGTTGAGTTGCTTATATAGATTACTTATTTCAATCTGAAGGTTTCAGAGCCTTTGTACTAGAATATATACAAATTGCAGTATACTATATACTGAAGTTAAGTAATAAAAGCGGGTTCCATGTTCGTTAAGTA-AAAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452321" ref_strand="+" ref_description="SGN-E452321 [cSTS-16-M10]">
      <seq>gagagagagagggccctattgtagatcaaaggtgatctttgtgtctttaaaaagaaaagaagggaagtggaaaaaattgactccatactcatcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51751" stop="53993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52052" g_stop="52284" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="374" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="593" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53693" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="709" r_length="116" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E452321" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52052" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTAAAGAGGGCCCTATTGTAGATCAAAAGTGATCTTTGTGCGTCTTTAAAAAGGGAAGAAGGAATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGA</genome_strand>
        <mrna_strand>GAGAGAGAGAGGGCCCTATTGTAGATCAAAGGTGATCTTTGT--GTCTTTAAAAAGAAAAGAAGGGAAGTGGAAAAAATTGACTCCATACTCATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468684" ref_strand="+" ref_description="SGN-E468684 [cSTB-5-N21]">
      <seq>ctagtctcgaatttttatttttatttttaaaaagagggtcctattgtagatcaaaggtcatctttgtgtctttaaaaagaaaagaacggaagtggaaaaaattgactccatactcatcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51757" stop="53396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52061" g_stop="52284" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="253" r_length="219" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="399" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53096" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="482" r_length="83" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="28" polyA_stop="18"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E468684" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52061" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCCCTATTGTAGATCAAAAGTGATCTTTGTGCGTCTTTAAAAAGGGAAGAAGGAATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAG</genome_strand>
        <mrna_strand>AGGGTCCTATTGTAGATCAAAGGTCATCTTTGT--GTCTTTAAAAAGAAAAGAACGGAAGTGGAAAAAATTGACTCCATACTCATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480220" ref_strand="+" ref_description="SGN-E480220 [cSTD-13-O7]">
      <seq>gaaaagaagggaagtggaaaaaattgactccatactcatcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcantgctactttgaatcattacaaagatgaatatgggtgaggatatcctaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51810" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52107" g_stop="52284" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="321" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="540" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="755" r_length="215" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E480220" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52107" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGAAGGAATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG-AAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATAT-GGTGAGGATATCCTAAAG</genome_strand>
        <mrna_strand>GAAAAGAAGGGAAGTGGAAAAAATTGACTCCATACTCATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCANTGCTACTTTGAATCATTACAAAGATGAATATGGGTGAGGATATCCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478815" ref_strand="+" ref_description="SGN-E478815 [cSTD-7-M17]">
      <seq>gaagggaagtggaaaaaattgactccatactcatcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtgggactgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51812" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52112" g_stop="52284" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="316" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="535" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="748" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="756" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E478815" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52112" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>GAAGGGAAGTGGAAAAAATTGACTCCATACTCATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGGACTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591583" ref_strand="+" ref_description="SGN-E591583 [45298]">
      <seq>ggaagtggaaaaattgactccatactcatcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51825" stop="54040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52115" g_stop="52284" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="310" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="529" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53740" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="692" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E591583" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52115" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCA</genome_strand>
        <mrna_strand>GGAA-GTGGAAA-AATTGACTCCATACTCATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAA-AAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450357" ref_strand="+" ref_description="SGN-E450357 [cSTS-9-K7]">
      <seq>gggaagtggaaaaaattgactccatactcatcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51815" stop="53517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52115" g_stop="52284" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="313" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53217" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="517" r_length="204" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E450357" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52115" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACT</genome_strand>
        <mrna_strand>GGGAAGTGGAAAAAATTGACTCCATACTCATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720629" ref_strand="+" ref_description="SGN-E720629 [FC11BD12]">
      <seq>aatcggccgaattgactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52117" g_stop="52284" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="312" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="531" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="744" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53978" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="822" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E720629" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52117" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</genome_strand>
        <mrna_strand>AAT-CG-GCCGAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717848" ref_strand="+" ref_description="SGN-E717848 [FC02DF11]">
      <seq>aatcggccgaattggactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52117" g_stop="52284" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="313" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="532" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="745" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53949" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="794" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E717848" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52117" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAA</genome_strand>
        <mrna_strand>AAT-CGGCCGAATTGGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721384" ref_strand="+" ref_description="SGN-E721384 [FC13CH08]">
      <seq>gggggatccgacggactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcaaaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51832" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52119" g_stop="52284" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="312" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="531" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="744" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53905" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="749" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E721384" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52119" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATT</genome_strand>
        <mrna_strand>GGGGGATCCGACGGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAAAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720242" ref_strand="+" ref_description="SGN-E720242 [FC10AH10]">
      <seq>tcggccgaattggactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccaaatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52120" g_stop="52284" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="311" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="530" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="743" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53932" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="775" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E720242" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52120" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACT</genome_strand>
        <mrna_strand>TCGGCCGAATTGGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAAATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446533" ref_strand="+" ref_description="SGN-E446533 [cSTA-21-D8]">
      <seq>gaaaaaaattgactccatacctcatcactctgcattttcgagtcttcacaatcatatcctcctaaccaccaccaccagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcagcgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51822" stop="53527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52122" g_stop="52284" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="311" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53227" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="525" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E446533" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52122" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAATTGACTCCCTA-CTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAG-AAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACC</genome_strand>
        <mrna_strand>GAAAAAAATTGACTCCATACCTCATCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCTAACCACCACCACCAGAAGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAGCGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452057" ref_strand="+" ref_description="SGN-E452057 [cSTS-15-B17]">
      <seq>gaaaaaattgactccatactcatcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcanagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51824" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52123" g_stop="52284" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="305" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="524" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="737" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="745" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E452057" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52123" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>GAAAAAATTGACTCCATACTCATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCANAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566400" ref_strand="+" ref_description="SGN-E566400 [4839]">
      <seq>cggctgcagaatcggcacgaggcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagtctccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtcaacaagaaatctctcggaagaggacgttgttatcacactactggggatcaccgcaagcttttggtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52131" g_stop="52284" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="298" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="518" r_length="220" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E566400" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52131" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGT-TCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGT-AACAAGAAATCTCTC-GAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</genome_strand>
        <mrna_strand>CGGCTGCAGAATCGGCACGAGGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTCTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTCAACAAGAAATCTCTCGGAAGAGGACGTTG-TTATCACACTACTGGGGATCACCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725142" ref_strand="+" ref_description="SGN-E725142 [FC26AG12]">
      <seq>gactccctactcatccccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51832" stop="54315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52132" g_stop="52284" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="299" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="518" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="731" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54015" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="846" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E725142" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52132" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAA</genome_strand>
        <mrna_strand>GACTCCCTACTCATCCCCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699736" ref_strand="+" ref_description="SGN-E699736 [FA11AC09]">
      <seq>tcggcacgaggcatcaccctgcattttcgagtcttgacgatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttacagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattataattttagccacaaggagcagagcgcaactcaatgctactttgaatcattacaaagatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51836" stop="54073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52132" g_stop="52284" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="299" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="518" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53773" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="714" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E699736" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52132" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</genome_strand>
        <mrna_strand>TCGGCACGAGGCATCACCCTGCATTTTCGAGTCTTGACGATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTACAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTATAATTTTAGCCACAAGGAGCAGAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724633" ref_strand="+" ref_description="SGN-E724633 [FC24CH01]">
      <seq>gattggcggccaatcggccgaattggactccctactcaccttaaagcattttcgagtcttgacaatcatatcctcctcccgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtgaaggttcttcgtgatgcaattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52135" g_stop="52284" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="178" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="324" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="543" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="756" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54006" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="862" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E724633" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52135" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACA</genome_strand>
        <mrna_strand>TCCCTACTCACCTTAAAGCATTTTCGAGTCTTGACAATCATATCCTCCTCCCGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGAAGGTTCTTCGTGATGCAATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721245" ref_strand="+" ref_description="SGN-E721245 [FC13AH02]">
      <seq>tagggcgattggcggccaatcggccgaattggactccctactcaccactttgaattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52135" g_stop="52284" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="330" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="549" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="762" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53978" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="840" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E721245" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52135" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</genome_strand>
        <mrna_strand>TCCCTACTCACCACTTTGAATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718545" ref_strand="+" ref_description="SGN-E718545 [FC04DH10]">
      <seq>gggcgattggcggccaatcggccgaattggactccctactcatccccttgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52135" g_stop="52284" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="182" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="328" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="547" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="760" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53976" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="836" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E718545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52135" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATT</genome_strand>
        <mrna_strand>TCCCTACTCATCCCCTTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454368" ref_strand="+" ref_description="SGN-E454368 [cSTS-23-E7]">
      <seq>cgaggacccctctgcactttcgagtcttcacaatcacaccctcctaacacacaccgaagaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagcctgtgaacaaactccgatctgccttcaaaggactggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagctctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacaccttggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagaatctcctaaagaaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaaaaggacgttgcttatcacacttactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctannagcattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51890" stop="54087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52138" g_stop="52284" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="289" r_length="147" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="513" r_length="224" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="726" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="734" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E454368" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52138" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAAC-AACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGA-TGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACA-C-TGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAG-ATCTCCTAAAG-AACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACAC-TACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>CGAG-GACCCCTCTGCACTTTCGAGTCTTCACAATCACA--C-CCTCCT-AACACACACCGAAGAA-AAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGCCTGTGAACAAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GACTGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGCTCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACCTTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGAATCTCCTAAAGAAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAAAGGACGTTGCTTATCACACTTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTANNA..............................................................................................................GCATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479479" ref_strand="+" ref_description="SGN-E479479 [cSTD-10-I9]">
      <seq>cgaggcatcactctgcattttcgagtcttcacaatcatatcctcctaccacacaccgaagaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagacctgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgaagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagataaatatgggtgaggatatcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51838" stop="54088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52138" g_stop="52284" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="289" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="508" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53788" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="721" r_length="213" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479479" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52138" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGA-CTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG-AGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATAT-GGTGAGGATATCCTAA</genome_strand>
        <mrna_strand>CGAGGCATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCT-ACCACACACCGAAGAA-AAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACCTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATAAATATGGGTGAGGATATCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479829" ref_strand="+" ref_description="SGN-E479829 [cSTD-11-F1]">
      <seq>ctcatcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggntgaggatatcctaaagcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51841" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52141" g_stop="52284" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="287" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="506" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="720" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="728" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479829" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52141" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGG-TGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>CTCATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGNTGAGGATATCCTAAAG..............................................................................................................CAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337291" ref_strand="+" ref_description="SGN-E337291 [cTOE-7-B6]">
      <seq>tcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51842" stop="53420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52142" g_stop="52284" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="289" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53120" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="396" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E337291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52142" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGC</genome_strand>
        <mrna_strand>TCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701362" ref_strand="+" ref_description="SGN-E701362 [FA15DA10]">
      <seq>caccatcctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttctttcgtgatgcattaacaggagaggaacagaggaagatcatctaccccgagttatcgctacaagggctgaggtcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="288" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="507" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="720" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54067" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="887" r_length="167" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E701362" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTC-TTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCT</genome_strand>
        <mrna_strand>CACCATCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTTCGTGATGC-ATTAACAGGAGAGGAACAGAGGAAGATCATCTACCCCGAGTTATCGCTACAAGGGCTGAGGTCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592369" ref_strand="+" ref_description="SGN-E592369 [46101]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgaggggcaccataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="286" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="505" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="718" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53951" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="769" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E592369" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAA</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGGCACCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589595" ref_strand="+" ref_description="SGN-E589595 [43173]">
      <seq>catcactctgcatttttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctggcttcaaaggatggggaacgaacgagaagttgattatagtcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagcatggacaagaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagcaagatctccgataaggcttacagtgacgatgaggtcattcagaattttagccacaaggagcaaagggcaactcaatgctactttgaatcattacaaagatgactatggtgaggatatcctaaagcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="288" r_length="147" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="509" r_length="221" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="724" r_length="215" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53906" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="730" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E589595" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCA-TTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATA-TCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAG-ATGGACAA-AAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG-AAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATT-AGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTA</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGGCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATAGTCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGCATGGACAAGAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGCAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTCAGAATTTTAGCCACAAGGAGCAAAGGGCAACTCAATGCTACTTTGAATCATTACAAAGATGACTATGGTGAGGATATCCTAAAG..............................................................................................................CAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444927" ref_strand="+" ref_description="SGN-E444927 [cSTA-44-E22]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgataagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctncgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="286" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="505" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53764" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="692" r_length="187" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E444927" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAG</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGATAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTNCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479843" ref_strand="+" ref_description="SGN-E479843 [cSTD-11-H13]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaaatttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="503" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53762" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="688" r_length="185" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479843" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAA</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAAATTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596113" ref_strand="+" ref_description="SGN-E596113 [39400]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggttggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaaagcgcaactcaatgctactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="286" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="505" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53752" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="682" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E596113" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGG-TGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGC-AAAGCGCAACTCAATGCTACTTTGA</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAAGCGCAACTCAATGCTACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450004" ref_strand="+" ref_description="SGN-E450004 [cSTS-8-I15]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="54006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53706" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="633" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E450004" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATT</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454150" ref_strand="+" ref_description="SGN-E454150 [cSTS-22-E8]">
      <seq>catcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="592" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E454150" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478004" ref_strand="+" ref_description="SGN-E478004 [cSTD-2-N11]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53645" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="572" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E478004" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGC</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481549" ref_strand="+" ref_description="SGN-E481549 [cSTD-18-H15]">
      <seq>catcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53611" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="538" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E481549" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATG</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446522" ref_strand="+" ref_description="SGN-E446522 [cSTA-21-P15]">
      <seq>catcactctgcattttctagtcttcacaatcatatgctcctgagcacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgacaagttgattatatcaatataggctcatagaaatgctgctcaacgcaaattgattcaacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgacagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctgctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactgtggatcaccgcaagcttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E446522" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCTAGTCTTCACAATCATA---TGCTCCTGAGCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGACAAGTTGATTATATCAATATAGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCAACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGACAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTGCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGTGGATCACCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481617" ref_strand="+" ref_description="SGN-E481617 [cSTD-18-H8]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E481617" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480122" ref_strand="+" ref_description="SGN-E480122 [cSTD-12-D6]">
      <seq>catcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53152" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="424" r_length="139" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E480122" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGG</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444348" ref_strand="+" ref_description="SGN-E444348 [cSTA-42-J11]">
      <seq>catcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53132" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="404" r_length="119" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E444348" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATC</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444928" ref_strand="+" ref_description="SGN-E444928 [cSTA-44-E22]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgataagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="286" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53097" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="370" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E444928" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGC</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGATAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562775" ref_strand="+" ref_description="SGN-E562775 [1215]">
      <seq>catcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttcctggggaattatctacttaaagagttggacagagcaacttacccatgatttcgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaaggaagctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51843" stop="53380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52143" g_stop="52284" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="288" r_length="149" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.83"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53080" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="356" r_length="68" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E562775" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52143" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTT-TTGGGGAA-GATCTGCTTAAAGAGTTGGACAGAG-AACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCT-AAGGAAGCTACTA</genome_strand>
        <mrna_strand>CATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTCCTGGGGAATTATCTACTTAAAGAGTTGGACAGAGCAACTTACCCATGATTTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAAGGAAGCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462143" ref_strand="+" ref_description="SGN-E462143 [cPRO-10-B24]">
      <seq>atcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacnaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgangttgttgcactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="503" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="716" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53935" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="751" r_length="35" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E462143" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTT</genome_strand>
        <mrna_strand>ATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACNAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGANGTTGTTGCACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461393" ref_strand="+" ref_description="SGN-E461393 [cPRO-8-E24]">
      <seq>atcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacanggagcaaagcgcaactcaatgctactttgaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="54058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="503" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53758" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="684" r_length="181" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E461393" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATT</genome_strand>
        <mrna_strand>ATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACANGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466548" ref_strand="+" ref_description="SGN-E466548 [cPRO-24-F24]">
      <seq>atcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagcccacaggagcaaagcgcaactcaatgctactttgaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="54058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="503" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53758" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="684" r_length="181" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E466548" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATT</genome_strand>
        <mrna_strand>ATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCCACAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480085" ref_strand="+" ref_description="SGN-E480085 [cSTD-12-H9]">
      <seq>atcactctgcattttcgagtcttcacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="54054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="283" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="502" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53754" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="679" r_length="177" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E480085" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAAT</genome_strand>
        <mrna_strand>ATCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302520" ref_strand="+" ref_description="SGN-E302520 [cLEX-1-E5]">
      <seq>atcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="54033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="287" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="506" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53733" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="662" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E302520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCG</genome_strand>
        <mrna_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341309" ref_strand="+" ref_description="SGN-E341309 [cTOE-22-P1]">
      <seq>atcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="53933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="287" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="506" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53633" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="562" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E341309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCG</genome_strand>
        <mrna_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249244" ref_strand="+" ref_description="SGN-E249244 [cLEF-50-N13]">
      <seq>atcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="53915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="287" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="506" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53615" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="544" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E249244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGG</genome_strand>
        <mrna_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400185" ref_strand="+" ref_description="SGN-E400185 [cSTC-5-D11]">
      <seq>atcactttgcattttcgagtcttcacaatcgtgtgctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactaaatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttattacactactgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="53521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53221" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="492" r_length="208" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E400185" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGG</genome_strand>
        <mrna_strand>ATCACTTTGCATTTTCGAGTCTTCACAATC--GT-GTGCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAAATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATTACACTACTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445472" ref_strand="+" ref_description="SGN-E445472 [cSTA-45-J21]">
      <seq>atcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="53492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53192" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="463" r_length="179" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E445472" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGA</genome_strand>
        <mrna_strand>ATCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571570" ref_strand="+" ref_description="SGN-E571570 [14684]">
      <seq>atcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51844" stop="53373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52284" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="284" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53073" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="344" r_length="60" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E571570" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAA</genome_strand>
        <mrna_strand>ATCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479100" ref_strand="+" ref_description="SGN-E479100 [cSTD-8-H5]">
      <seq>tcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51845" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52145" g_stop="52284" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="717" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="725" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479100" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52145" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAG-AAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>TCACTCTGCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453867" ref_strand="+" ref_description="SGN-E453867 [cSTS-21-M4]">
      <seq>tcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaagtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51845" stop="54062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52145" g_stop="52284" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="283" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="502" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53762" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="687" r_length="185" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E453867" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52145" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAA</genome_strand>
        <mrna_strand>TCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAAGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557574" ref_strand="+" ref_description="SGN-E557574 [16394]">
      <seq>tcactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataagggttacagtgacgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51845" stop="54000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52145" g_stop="52284" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="283" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="502" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53700" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="625" r_length="123" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E557574" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52145" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAG</genome_strand>
        <mrna_strand>TCACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGGTTACAGTGACGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479962" ref_strand="+" ref_description="SGN-E479962 [cSTD-12-C7]">
      <seq>tcactctgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51845" stop="53524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52145" g_stop="52284" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="283" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53224" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="494" r_length="211" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479962" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52145" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATC</genome_strand>
        <mrna_strand>TCACTCTGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710606" ref_strand="+" ref_description="SGN-E710606 [FA55DG07]">
      <seq>caccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagacgaccctggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51846" stop="54303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52146" g_stop="52284" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="285" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="504" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="717" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54003" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="820" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E710606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52146" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTA</genome_strand>
        <mrna_strand>CACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGACGACCCTGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600958" ref_strand="+" ref_description="SGN-E600958 [53982]">
      <seq>cactctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagacattttagccacaaggagcaaagcgcaactcaatgctactttgcaatcattgacaaagatgaaatatggtgaggatatcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51846" stop="54088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52146" g_stop="52284" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="282" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="501" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53788" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="716" r_length="215" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E600958" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52146" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGA-ATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTG-AATCATT-ACAAAGATG-AATATGGTGAGGATATCCTAA</genome_strand>
        <mrna_strand>CACTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGACATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGCAATCATTGACAAAGATGAAATATGGTGAGGATATCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559203" ref_strand="+" ref_description="SGN-E559203 [18664]">
      <seq>actctgcatttccgagtctacacaatacatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttacagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgtgaagcttttggtacctcttgtgagctcctaccgatatggagcgagacgatgtggacttgcgccttgctaaagcagaatctaaagtgctgcagtgagaagatctccgataaggcttacagtgacgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52147" g_stop="52284" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="282" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="502" r_length="220" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53699" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="626" r_length="124" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E559203" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52147" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCG-CAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGG-GGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCA-TGAGAAGATCTCCGATAAGGCTTACAGTGACGATGA</genome_strand>
        <mrna_strand>ACTCTGCATTTCCGAGTCTACACAAT-ACAT-ATCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTACAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGTGAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGCGAGACGATGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCAGTGAGAAGATCTCCGATAAGGCTTACAGTGACGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459025" ref_strand="+" ref_description="SGN-E459025 [cPRO-33-I21]">
      <seq>ctctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagccactggaagatgaggatgagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="54226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52148" g_stop="52284" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="280" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="712" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53926" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="738" r_length="26" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E459025" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52148" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGT</genome_strand>
        <mrna_strand>CTCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CCACTGGAAGATGAGGATGAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299859" ref_strand="+" ref_description="SGN-E299859 [cLEW-1-G22]">
      <seq>ccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51848" stop="53920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52148" g_stop="52284" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="283" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="502" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53620" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="545" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E299859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52148" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</genome_strand>
        <mrna_strand>CCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709577" ref_strand="+" ref_description="SGN-E709577 [FA52BH10]">
      <seq>cccctattttcgagtcttgacaatcatatcctcctcctgcccacccatagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtccattagaattttagccaccaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51854" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52284" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="282" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="501" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="715" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53913" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="728" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E709577" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGT-CATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATG</genome_strand>
        <mrna_strand>CCCCTATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACCCATAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCCATTAGAATTTTAGCCACCAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302483" ref_strand="+" ref_description="SGN-E302483 [cLEW-27-L22]">
      <seq>cctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51849" stop="53918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52284" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="282" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="501" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53618" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="542" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E302483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGA</genome_strand>
        <mrna_strand>CCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588252" ref_strand="+" ref_description="SGN-E588252 [41800]">
      <seq>taaactagtggatccccgggctgcatggtctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgaggaagtggattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccngaagcttttggtacctcttgtgagctcctaccgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52284" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="161" r_length="133" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="308" r_length="147" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="527" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53610" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="560" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E588252" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGA-GAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATAT</genome_strand>
        <mrna_strand>TCTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGGAAGTGGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCNGAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585171" ref_strand="+" ref_description="SGN-E585171 [66890]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaacgatgaggatgagtttgttgcactatttgaggggcaccataaaaggtcttgtctacccttgagcactatttcgtggaaggtccttcgtgatgcaatttaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="54308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="710" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54008" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="823" r_length="113" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E585171" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAA-GATGAGGATGAGTTTGTTGCACT-GTTAAGGGCCACCATAAAAGGTCTTGTCTACCC-CGAGCACTATTTCGTGG-AGGTTCTTCGTGATGCAA-TTAACAGG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAACGATGAGGATGAGTTTGTTGCACTATTTGAGGGGCACCATAAAAGGTCTTGTCTACCCTTGAGCACTATTTCGTGGAAGGTCCTTCGTGATGCAATTTAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487927" ref_strand="+" ref_description="SGN-E487927 [cSTE-27-A17]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagtagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattancaagatgaatatggtgaggatatcctaaagcaattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="279" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="498" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="711" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53909" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="720" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E487927" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAA</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGTAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTANCAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454360" ref_strand="+" ref_description="SGN-E454360 [cSTS-23-C11]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="710" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E454360" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479078" ref_strand="+" ref_description="SGN-E479078 [cSTD-8-B1]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagaatctacttaaagaagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagaatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="54052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="281" r_length="148" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="501" r_length="220" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53752" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="676" r_length="175" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479078" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAG-ATCTGCTTAAAG-AGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAG-ATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGA</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGAATCTACTTAAAGAAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGAATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456428" ref_strand="+" ref_description="SGN-E456428 [cSTS-29-B17]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="585" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E456428" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442448" ref_strand="+" ref_description="SGN-E442448 [cSTA-33-F1]">
      <seq>ctgcattttcgagtcttcacaatcatgtcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="279" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="498" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53610" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="531" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E442448" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATAT</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATGTCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588483" ref_strand="+" ref_description="SGN-E588483 [42037]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtgttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcggaagaggacgttgcttatcacactactggggatcaccgaagcttttggtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53227" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="493" r_length="215" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E588483" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTC-GAAGAGGACGTTGCTTATCACACTACTGGGGATCACC</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTGTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGGAAGAGGACGTTGCTTATCACACTACTGGGGATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563282" ref_strand="+" ref_description="SGN-E563282 [1723]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaagaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaacctttgttcttggtggagatagcttgtactagatctcctaaaagaactggttttggccacggaagcttatcatgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="279" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53174" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="443" r_length="164" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E563282" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAG-AAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAA-CTTTGTTCTT-GTGGAGATAGCTTGTACCAGATCTCCT-AAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAGAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACCTTTGTTCTTGGTGGAGATAGCTTGTACTAGATCTCCTAAAAGAACTGGTTTTGGCCACGGAAGCTTATCATGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444274" ref_strand="+" ref_description="SGN-E444274 [cSTA-42-G6]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53118" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="383" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E444274" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATA</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468328" ref_strand="+" ref_description="SGN-E468328 [cSTB-3-G4]">
      <seq>ctgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53064" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="329" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E468328" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332214" ref_strand="+" ref_description="SGN-E332214 [cTOD-17-E15]">
      <seq>ctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgaggtcattttcataattacagaataatttttgaattcttagttgattatttgagtttctgagttactctgtgtgatcaaaggcagatctatgatgtaaaatatatatacacattatccgtatagtaaaaccatgctaattctgaacccgatactctagatcatggattcaacttcgattttatcagagacagatctatgaaaaatatgtattagtatgtcaaaatatgaaaatgtgtacatatataataaaatcatacgtgttttgaattcactgactcgagatcctggatttgccttttgactttttgatcgtatgtgaactttgatcagaaatgataaccaacacttgtacttgtgttttctcttgaatgtttctcgcagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="53064" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="712" r_length="577" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E332214" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="53064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGT-AAA-ATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449929" ref_strand="+" ref_description="SGN-E449929 [cSTS-7-N2]">
      <seq>tgcattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaaagcattggaagatgaggatgagtttgttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="54231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="496" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="709" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53931" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="740" r_length="31" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E449929" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCAC</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAA..............................................................................................................GCATTGGAAGATGAGGATGAGTTTGTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331976" ref_strand="+" ref_description="SGN-E331976 [cTOD-16-D19]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaaatttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="54073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="280" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53773" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="695" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E331976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAAATTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558669" ref_strand="+" ref_description="SGN-E558669 [18045]">
      <seq>tgcatttttcgagtcttcacaatcatatcctcctaaccacacacagaagacaaaaaattggcagtcttacagtgccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattaaattttagccacaaggagcaaagcgcaactcaaatgctactttgaatcattacaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="54067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53767" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="687" r_length="190" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E558669" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCA-TTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTC-AATGCTACTTTGAATCATTACAAAGATG</genome_strand>
        <mrna_strand>TGCATTTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGACAAAAAATTGGCAGTCTTACAGTGCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTA-AATTTTAGCCACAAGGAGCAAAGCGCAACTCAAATGCTACTTTGAATCATTACAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447856" ref_strand="+" ref_description="SGN-E447856 [cSTS-4-A3]">
      <seq>tgcattttcgagtcttacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="54061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53761" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="678" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E447856" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACA</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTT-ACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449800" ref_strand="+" ref_description="SGN-E449800 [cSTS-7-F11]">
      <seq>tgcattttcgagtcttcacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattntagccacaaggagcaaagcgcaactcaatgctactttgaatcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="54060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53760" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="678" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E449800" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTAC</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTCACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTNTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299569" ref_strand="+" ref_description="SGN-E299569 [cLEW-20-O2]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="280" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="587" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E299569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304702" ref_strand="+" ref_description="SGN-E304702 [cLEX-11-D19]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="280" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="499" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="587" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E304702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449347" ref_strand="+" ref_description="SGN-E449347 [cSTS-6-M21]">
      <seq>tgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="496" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53639" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="558" r_length="62" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E449347" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGC</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300358" ref_strand="+" ref_description="SGN-E300358 [cLEW-17-P1]">
      <seq>tgcattttcgagtcttgacaatcatatcctcctcctgcccacgacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="281" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="500" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E300358" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCAC-ACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACGACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579143" ref_strand="+" ref_description="SGN-E579143 [86268]">
      <seq>tgcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactgggttttggcaagggaagctttatcatgcctcgtaacaagaaatctctcgaagaggacgttgctttatcacactactggggatcaccggcaagcttttggtactcttgtgagcctcctaccgatatggaggagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51851" stop="53543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52284" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53227" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="495" r_length="218" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E579143" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACT-GGTTTTGGCAAGAGAAGC-TTATCATG-CTCGTAACAAGAAATCTCTCGAAGAGGACGTTGC-TTATCACACTACTGGGGATCACC</genome_strand>
        <mrna_strand>TGCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGGTTTTGGCAAGGGAAGCTTTATCATGCCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTTATCACACTACTGGGGATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702196" ref_strand="+" ref_description="SGN-E702196 [FA18AC07]">
      <seq>gcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgncattaacaggagaggaacagaggaagatcatctaacccgagttatcgctancagggctgaggtcgatctgaagactatcgctaacgagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="279" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="498" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="711" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54090" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="901" r_length="190" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E702196" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACC</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGNCATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTANCAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585485" ref_strand="+" ref_description="SGN-E585485 [67945]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgttaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaactggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgaagcactattttgtggaggttcttcgtgatgcaattaacaggagaggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="708" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54017" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="826" r_length="118" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E585485" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCG-AGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACA</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGTTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAACTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAAGCACTATTTTGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479038" ref_strand="+" ref_description="SGN-E479038 [cSTD-8-E18]">
      <seq>gcattttcgagtcttcacatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagccactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="54096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="274" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="493" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="706" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="714" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479038" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCAC-ATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CCACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436811" ref_strand="+" ref_description="SGN-E436811 [cSTA-1-O3]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaaatcattacaagatgaatatggtgaggatatcctaaagcaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="496" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="709" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53907" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="716" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E436811" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTG-AATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAG</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAAATCATTAC-AAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451431" ref_strand="+" ref_description="SGN-E451431 [cSTS-12-B14]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagaatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="277" r_length="147" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="496" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="709" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E451431" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAG-ATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGAATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452121" ref_strand="+" ref_description="SGN-E452121 [cSTS-15-B4]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagaagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="277" r_length="147" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="496" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53762" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="681" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E452121" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAG-AGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAA</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600078" ref_strand="+" ref_description="SGN-E600078 [53080]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagcaattttagccacaagggagcaaagcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="54035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="496" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53735" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="656" r_length="160" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E600078" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAG-AATTTTAGCCACAA-GGAGCAAAGCGCA</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGCAATTTTAGCCACAAGGGAGCAAAGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568074" ref_strand="+" ref_description="SGN-E568074 [12299]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcaggaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagacattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactacgagatggacaaaaagcaactttgttcttggtggagatagcttgtactagatctcctaaagaactggttttcggcacagggaagcttatcatgctcgtaacaagaaatctctcggaagaggacgtcgcttatcacactactggggatcaccggaagcttttggtacctcttgtgagctcctaccgatatggaggagaccgaggtggacttgcgccttggtaaagccggaatctaaagtgctgcatgagaagatctccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="501" r_length="223" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53678" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="604" r_length="103" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E568074" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCA-GAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTT-GTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTT-GGCA-AGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTC-GAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGA-TGAGGTGGACTTGCGACTTGCTAAAG-CAGAATCTAAAGTGCTGCATGAGAAGATCTCCGA</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................ACATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTACGAGATGGACAAAAAGCAACTTTGTTCTTGGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTCGGCACAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGGAAGAGGACGTCGCTTATCACACTACTGGGGATCACCGGAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACCGAGGTGGACTTGCGCCTTGGTAAAGCCGGAATCTAAAGTGCTGCATGAGAAGATCTCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303135" ref_strand="+" ref_description="SGN-E303135 [cLEX-5-C14]">
      <seq>gcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="279" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="498" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53667" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="588" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E303135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423816" ref_strand="+" ref_description="SGN-E423816 [STM-42-J15]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaagtggacttgcgccttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="583" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E423816" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAAGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479097" ref_strand="+" ref_description="SGN-E479097 [cSTD-8-F17]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53655" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="573" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479097" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAA</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452977" ref_strand="+" ref_description="SGN-E452977 [cSTS-18-D7]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaagtggacttgcgccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53640" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="558" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E452977" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCT</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAAGTGGACTTGCGCCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580475" ref_strand="+" ref_description="SGN-E580475 [5718]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttggtggagatagcttgtactaggatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgtttatcaccactactgggggatcaccgcaagccttttggtacctcttgtgagctcctacagatatggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="499" r_length="223" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53615" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="538" r_length="39" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E580475" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTT-GTGGAGATAGCTTGTACCA-GATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCA-CACTACT-GGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAG-CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGG</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGGTGGAGATAGCTTGTACTAGGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGTTTATCACCACTACTGGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CCTTTTGGTACCTCTTGTGAGCTCCTACAGATATGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564366" ref_strand="+" ref_description="SGN-E564366 [2615]">
      <seq>gcattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51852" stop="53380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52284" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53080" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="344" r_length="67" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E564366" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTA</genome_strand>
        <mrna_strand>GCATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453823" ref_strand="+" ref_description="SGN-E453823 [cSTS-21-C12]">
      <seq>cattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatnggtgaggatatcctaaagcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="709" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="717" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E453823" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG-AAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATAT-GGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATNGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572350" ref_strand="+" ref_description="SGN-E572350 [31490]">
      <seq>cattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="54064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53764" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="681" r_length="187" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E572350" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAG</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451064" ref_strand="+" ref_description="SGN-E451064 [cSTS-11-K2]">
      <seq>cattttcgagtcttacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="54015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="273" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="492" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53715" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="630" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E451064" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTA</genome_strand>
        <mrna_strand>CATTTTCGAGTCTT-ACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443541" ref_strand="+" ref_description="SGN-E443541 [cSTA-38-F16]">
      <seq>cattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgacctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53667" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="584" r_length="90" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E443541" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGACCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447209" ref_strand="+" ref_description="SGN-E447209 [cSTA-25-C14]">
      <seq>cattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53666" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="583" r_length="89" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E447209" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGA</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456824" ref_strand="+" ref_description="SGN-E456824 [cSTS-30-L11]">
      <seq>cattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="582" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E456824" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322690" ref_strand="+" ref_description="SGN-E322690 [cTOB-26-H19]">
      <seq>cattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="585" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E322690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591225" ref_strand="+" ref_description="SGN-E591225 [44932]">
      <seq>cattttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53651" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="569" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E591225" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATC</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310490" ref_strand="+" ref_description="SGN-E310490 [cTOA-9-G1]">
      <seq>cattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="497" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53620" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="540" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E310490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443027" ref_strand="+" ref_description="SGN-E443027 [cSTA-35-N20]">
      <seq>cattttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53609" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="526" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E443027" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATA</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303087" ref_strand="+" ref_description="SGN-E303087 [cLEW-26-D18]">
      <seq>cattttcgagtcttgacaatcatatcctgctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccacatctcctaaagaactggttttggcaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51853" stop="53459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52284" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="278" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53159" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="424" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E303087" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGA</genome_strand>
        <mrna_strand>CATTTTCGAGTCTTGACAATCATATCCTGCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCACATCTCCTAAAGAACTGGTTTTGGCAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603592" ref_strand="+" ref_description="SGN-E603592 [56685]">
      <seq>attttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggcgaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaatttggcaagatagagagatgacgtttgttgccactattgaggggccaccataaagaggtcttgtcttaaccctgaagcactatttcgtggagggtccttcgtgatgccaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51854" stop="54303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52154" g_stop="52284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="707" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54003" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="823" r_length="116" r_score="0.699"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E603592" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52154" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAA-TTAG-AAGAT-GAG-GATGA-GTTTGTTG-CACTGTT-AAGGGCCACCATAAA-AGGTCTTGTC-T-ACCCCG-AGCACTATTTCGTGGA-GGTTCTTCGTGATG-CAATTA</genome_strand>
        <mrna_strand>ATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGCGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTTGGCAAGATAGAGAGATGACGTTTGTTGCCACTATTGAGGGGCCACCATAAAGAGGTCTTGTCTTAACCCTGAAGCACTATTTCGTGGAGGGTCCTTCGTGATGCCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590703" ref_strand="+" ref_description="SGN-E590703 [44305]">
      <seq>attttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgaggggccaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51854" stop="54248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52154" g_stop="52284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="707" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="756" r_length="49" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E590703" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52154" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTT-AAGGGCCACCATA</genome_strand>
        <mrna_strand>ATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGGCCACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591817" ref_strand="+" ref_description="SGN-E591817 [45538]">
      <seq>attttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51854" stop="54020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52154" g_stop="52284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="275" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53720" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="637" r_length="143" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E591817" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52154" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCAC</genome_strand>
        <mrna_strand>ATTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301031" ref_strand="+" ref_description="SGN-E301031 [cLEW-22-O23]">
      <seq>attttcgagtcttgacaatcatatcctgctcctggccacacagagaagaagaaaaatggccagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagcttctaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51854" stop="53451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52154" g_stop="52284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="277" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53151" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="415" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E301031" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52154" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTG</genome_strand>
        <mrna_strand>ATTTTCGAGTCTTGACAATCATATCCTGCTCCTGGCCACACAGAGAAGAAGAAAAATGGCCAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTTCTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590782" ref_strand="+" ref_description="SGN-E590782 [44386]">
      <seq>ttttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagcaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggattgagtttgttgcacctattgagggccaccataaaaggtcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51855" stop="54258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52155" g_stop="52284" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="274" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="493" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="707" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53959" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="768" r_length="61" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E590782" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52155" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAG-AATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGA-TGAGTTTGTTGCA-CTGTTAAGGGCCACCATAAAAGGTCTTGT</genome_strand>
        <mrna_strand>TTTTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGCAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATTGAGTTTGTTGCACCTATTGAGGGCCACCATAAAAGGTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315026" ref_strand="+" ref_description="SGN-E315026 [cTOB-4-I4]">
      <seq>ttttcgagtcttgacaatcatatcctgctcctgcccacacagagaagaagaaaaatggctagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaacgaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctctaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51855" stop="53919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52155" g_stop="52284" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="495" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53619" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="537" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E315026" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52155" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGAT</genome_strand>
        <mrna_strand>TTTTCGAGTCTTGACAATCATATCCTGCTCCTGCCCACACAGAGAAGAAGAAAAATGGCTAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAACGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCTAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338731" ref_strand="+" ref_description="SGN-E338731 [cTOE-21-O17]">
      <seq>ttttcgagtcttgacaatcatttcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51855" stop="53354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52155" g_stop="52284" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="276" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53054" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="317" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E338731" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52155" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGA</genome_strand>
        <mrna_strand>TTTTCGAGTCTTGACAATCATTTCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452019" ref_strand="+" ref_description="SGN-E452019 [cSTS-15-I20]">
      <seq>ttcgagtcttcacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51857" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52157" g_stop="52284" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="270" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="489" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="702" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53908" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="710" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E452019" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52157" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGA</genome_strand>
        <mrna_strand>TTCGAGTCTTCACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453327" ref_strand="+" ref_description="SGN-E453327 [cSTS-19-L5]">
      <seq>ttcgagtcttcacaatcgtatcctcctaaccacacacagaaggaaaaaaatggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgcctttgctaagcagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52157" g_stop="52284" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="271" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="490" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53651" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="564" r_length="74" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E453327" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52157" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATC</genome_strand>
        <mrna_strand>TTCGAGTCTTCACAATCGTA---TCCTCCTAACCACACACAGAAGGAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTTGCTAAGCAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566212" ref_strand="+" ref_description="SGN-E566212 [4651]">
      <seq>ttcgagtcttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgaaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaagaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaaggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51857" stop="53538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52157" g_stop="52284" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="270" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="487" r_length="217" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E566212" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52157" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</genome_strand>
        <mrna_strand>TTCGAGTCTTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGC-AGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGA-AAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAA-GAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAG-GAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328455" ref_strand="+" ref_description="SGN-E328455 [cTOC-21-H24]">
      <seq>tcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51858" stop="54073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52158" g_stop="52284" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="273" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="492" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53773" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="688" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E328455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52158" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</genome_strand>
        <mrna_strand>TCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708983" ref_strand="+" ref_description="SGN-E708983 [FA42BD01]">
      <seq>ccggtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51859" stop="54334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52159" g_stop="52284" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="272" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="491" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="704" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54034" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="838" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E708983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52159" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAAC</genome_strand>
        <mrna_strand>CCGGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704126" ref_strand="+" ref_description="SGN-E704126 [FA23BF12]">
      <seq>cgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctanagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctactccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51859" stop="54318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52159" g_stop="52284" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="272" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="491" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="704" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54018" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="822" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E704126" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52159" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAG</genome_strand>
        <mrna_strand>CGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTANAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACTCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478220" ref_strand="+" ref_description="SGN-E478220 [cSTD-3-P1]">
      <seq>cgagtcttcacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51859" stop="53911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52159" g_stop="52284" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="268" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="487" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53611" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="521" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E478220" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52159" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATG</genome_strand>
        <mrna_strand>CGAGTCTTCACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449927" ref_strand="+" ref_description="SGN-E449927 [cSTS-7-L22]">
      <seq>gagtcttcacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaactggaagatgaggatgagtttgttgcactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51860" stop="54235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52160" g_stop="52284" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="267" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="486" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="699" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53935" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="734" r_length="35" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E449927" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52160" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTT</genome_strand>
        <mrna_strand>GAGTCTTCACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAACTGGAAGATGAGGATGAGTTTGTTGCACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703542" ref_strand="+" ref_description="SGN-E703542 [FA21DB11]">
      <seq>gtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctanagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatggcattaacaggagaggaacagaggaagatcatctaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51862" stop="54336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52162" g_stop="52284" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="269" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="488" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="701" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54036" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="837" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E703542" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52162" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCC</genome_strand>
        <mrna_strand>GTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTANAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGGCATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442951" ref_strand="+" ref_description="SGN-E442951 [cSTA-35-J11]">
      <seq>gtcttcacaatcttatcctctttaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactacttgggatcaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51874" stop="53529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52162" g_stop="52284" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="266" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53227" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="480" r_length="214" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E442951" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52162" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACC</genome_strand>
        <mrna_strand>GTCTTCACAATCTTATCCT-CT--TTACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTTGGGATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603754" ref_strand="+" ref_description="SGN-E603754 [56850]">
      <seq>cttcacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttaacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattaccaagattcaatatggtgaggatatcctaaagcaattgcaagatgaggatgacgtttgttgcactaattgagggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51864" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52164" g_stop="52284" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="264" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="483" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="698" r_length="215" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53946" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="746" r_length="48" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E603754" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52164" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTT-ACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGA-TGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGA-GTTTGTTGCACT-GTTAAGGGCCACCA</genome_strand>
        <mrna_strand>CTTCACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTAACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACCAAGATTCAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGCAAGATGAGGATGACGTTTGTTGCACTAATTGAGGGCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571240" ref_strand="+" ref_description="SGN-E571240 [11820]">
      <seq>ttcacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccaggcagaagttccttccgtcgctgaagactgtgaaacaactccgatctgccttcaaagtgatggggaacgaacgagaagttgattatatcaatttttggctcatagtaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacattaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctattgtggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagtatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52165" g_stop="52284" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="270" r_length="150" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="491" r_length="221" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53610" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="524" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E571240" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52165" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCC-GGCAGAAGTTCCTTCAGTCGCTGAAGACTGTG-AACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAG-GATGGGGAACGAATGAGAAGTTGATTATATCAA-TTTTGGCTCATAG-AAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGC-TTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATT-TGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAG-ATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATAT</genome_strand>
        <mrna_strand>TTCACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCAGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................TGATGGGGAACGAACGAGAAGTTGATTATATCAATTTTTGGCTCATAGTAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACATTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTGTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGTATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582426" ref_strand="+" ref_description="SGN-E582426 [8059]">
      <seq>ttcacaatcatatcctcctaaccacacacagaatgacaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacggacttatgctgaaacttttggggaagtatctacttaacagagttggacatgagaacttacccatgattttgagaaagttggtgctacatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttctctgtggagatagcttggtactagatctcctaaagaactggtttcggcaagggaagcttatcatgctcgtaacaagaaatctctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52165" g_stop="52284" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="268" r_length="149" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.83"/>
            <acceptor a_prob="0.996" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53192" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="451" r_length="183" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E582426" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52165" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAG-ATCTGCTTAA-AGAGTTGGACA-GAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAA-TTGGTGGTA-GTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCT-TGTGGAGATAGCTT-GTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGA</genome_strand>
        <mrna_strand>TTCACAATCATATCCTCCT-AACCACACACAGAATGACAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACGGACTTATGCTGAAACTTTTGGGGAAGTATCTACTTAACAGAGTTGGACATGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGGTGCTACATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTCTGTGGAGATAGCTTGGTACTAGATCTCCTAAAGAACTGGTTTCGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590948" ref_strand="+" ref_description="SGN-E590948 [44554]">
      <seq>cacaatcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaactggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaacctggagcactattttgtggacggttcttcgtgatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="54302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52167" g_stop="52284" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="261" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="480" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="693" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54002" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="797" r_length="104" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E590948" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52167" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCT-ACCCCGAGCACTATTTCGTGGA-GGTTCTTCGTGATGCAATT</genome_strand>
        <mrna_strand>CACAATCATA---TCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAACTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTAACCTGGAGCACTATTTTGTGGACGGTTCTTCGTGATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592177" ref_strand="+" ref_description="SGN-E592177 [45905]">
      <seq>cacaatcatatcctcctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="54279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52167" g_stop="52284" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="262" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="481" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="694" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53979" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="773" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E592177" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52167" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCG</genome_strand>
        <mrna_strand>CACAATCATATCCTCCT-AACCACACACAGA-AGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448436" ref_strand="+" ref_description="SGN-E448436 [cSTS-2-P12]">
      <seq>cacaatcatatcctcctaacccacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52167" g_stop="52284" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="260" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="479" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53665" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="567" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E448436" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52167" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATG</genome_strand>
        <mrna_strand>CACAATCATATCCTCCT--AACCCACAC--AGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284595" ref_strand="+" ref_description="SGN-E284595 [cLES-3-A14]">
      <seq>gatcatatactcctcctgcccacacagagaagaagaaaaatggcatgtcttacagatccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctattaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51871" stop="53909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52170" g_stop="52284" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="261" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="480" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53609" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="512" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E284595" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52170" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATA</genome_strand>
        <mrna_strand>GATCATATACTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCATGTCTTACAGATCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTATTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698924" ref_strand="+" ref_description="SGN-E698924 [FA08AB04]">
      <seq>atatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattacaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51874" stop="54312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52174" g_stop="52284" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="257" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="476" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="689" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54012" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="801" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E698924" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52174" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAG</genome_strand>
        <mrna_strand>ATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTACAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571041" ref_strand="+" ref_description="SGN-E571041 [15720]">
      <seq>atcatatcctcctaaccacacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgaggaagatctccgataaggcttacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51880" stop="53992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52174" g_stop="52284" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="257" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="476" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53689" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="589" r_length="113" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E571041" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52174" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGA-GAAGATCTCCGATAAGGCTTACA</genome_strand>
        <mrna_strand>ATCATATCCTCCTAACCACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGGAAGATCTCCGATAAGGCTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591090" ref_strand="+" ref_description="SGN-E591090 [44795]">
      <seq>cctaaccacacacagaagaaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51884" stop="54072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52184" g_stop="52284" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="248" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="467" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53772" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="662" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E591090" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52184" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCCCACACAGAGAAG-AAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATAT</genome_strand>
        <mrna_strand>CCTAACCACACACAGAAGAAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443012" ref_strand="+" ref_description="SGN-E443012 [cSTA-35-J12]">
      <seq>ccacacacagaagaaaaaggggggcaagggggacatttccggcagaccctccttcccccaccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattatggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctattaggctaaggaagctactaagagatggacaaaaagcaactttgttcttgaggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51947" stop="53478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52189" g_stop="52284" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.802"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="242" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53178" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="407" r_length="165" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E443012" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52189" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAAC</genome_strand>
        <mrna_strand>CCACACACAGAAGAAAAAGGGGGGCAAGGGGGACATTTCCGGCAGACCCTCCTTCCCCCACCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTATGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTAGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGAGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480051" ref_strand="+" ref_description="SGN-E480051 [cSTD-12-K24]">
      <seq>acacacagaagaaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51891" stop="53896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52191" g_stop="52284" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="240" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="459" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53596" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="478" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E480051" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52191" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGA</genome_strand>
        <mrna_strand>ACACACAGAAGAAAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707708" ref_strand="+" ref_description="SGN-E707708 [FA33DA10]">
      <seq>cgataagaggaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatcntacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51896" stop="54385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52195" g_stop="52284" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="236" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="455" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="668" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54085" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="853" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E707708" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52195" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGA</genome_strand>
        <mrna_strand>CGATAAGAGGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCNTACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478244" ref_strand="+" ref_description="SGN-E478244 [cSTD-3-D16]">
      <seq>gaagaaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggttgaggatatcctaaagcaattggaagatgaggatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51898" stop="54223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52198" g_stop="52284" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="232" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="451" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="665" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53923" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="688" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E478244" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52198" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGG-TGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTT</genome_strand>
        <mrna_strand>GAAGAA-AAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450095" ref_strand="+" ref_description="SGN-E450095 [cSTS-8-I20]">
      <seq>aaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgccgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaaagcattggaagatgaggatgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51903" stop="54224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52203" g_stop="52284" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="228" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="447" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="660" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="53924" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="684" r_length="24" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E450095" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52203" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTT</genome_strand>
        <mrna_strand>AAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCCGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAA..............................................................................................................GCATTGGAAGATGAGGATGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476940" ref_strand="+" ref_description="SGN-E476940 [cSTB-46-L1]">
      <seq>aaaaaaatggcaagtcttacagttccggcagaagttccttccgtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaaggtgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcagctttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51903" stop="53525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52203" g_stop="52284" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="228" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53225" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="440" r_length="212" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E476940" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52203" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCA</genome_strand>
        <mrna_strand>AAAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGGTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAGCTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747605" ref_strand="+" ref_description="SGN-E747605 [GI|3378207]">
      <seq>atggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaataagaagcggattggctcacttctgtttataatgaccagataatatgccattctccatatatttcagagttggcatgtgtttgatgattgagagtggtctgttcacatgagctttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51909" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52209" g_stop="52284" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="222" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="441" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="654" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54392" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="1140" r_length="486" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1141" polyA_stop="1160"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E747605" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1146</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52209" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>ATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTG-TTTATAATGACCAG-AT-AATATGCCATTCT-CCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGAGTGGTCTG-TTCACATGAGC-TTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624189" ref_strand="+" ref_description="SGN-E624189 [GI|8247362]">
      <seq>atggcaagtcttacagttccggcagaagttccttccgtagctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcagcgcaaattgattcgacagacttatgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtactgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttatcgctacaagggctgaggtggatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51909" stop="54491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52209" g_stop="52284" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="222" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="441" r_length="219" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="654" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54191" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="945" r_length="291" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E624189" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52209" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAA</genome_strand>
        <mrna_strand>ATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTAGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAGCGCAAATTGATTCGACAGACTTATGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTACTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATCGCTACAAGGGCTGAGGTGGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479219" ref_strand="+" ref_description="SGN-E479219 [cSTD-9-K9]">
      <seq>ggcaagtcttacagttccggcagaagttccttccgtcgctgaaaactgtgaacaactccgatctgccttcaaaggctggggaaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagaaaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagaaatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaagtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaagtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51911" stop="54060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52211" g_stop="52284" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="221" r_length="147" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="440" r_length="219" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53760" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="623" r_length="183" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479219" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52211" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGA-ACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTAC</genome_strand>
        <mrna_strand>GGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAAACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GCTGGGGAAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAAAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAAATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAAGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAAGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450513" ref_strand="+" ref_description="SGN-E450513 [cSTS-9-H3]">
      <seq>ggcaagtcttacagttccggcagaagttccttccgtcgctgaagaactgtgaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51911" stop="53915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52211" g_stop="52284" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="221" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="440" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53615" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="478" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E450513" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52211" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAG-ACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGG</genome_strand>
        <mrna_strand>GGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCCGTCGCTGAAGAACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327162" ref_strand="+" ref_description="SGN-E327162 [cTOC-18-H1]">
      <seq>ttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51919" stop="53404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52219" g_stop="52284" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="212" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53105" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="304" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E327162" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52219" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGT</genome_strand>
        <mrna_strand>TTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707689" ref_strand="+" ref_description="SGN-E707689 [FA33CH02]">
      <seq>ccgctgaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51928" stop="54459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52228" g_stop="52284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="203" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="422" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="635" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54159" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="894" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E707689" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52228" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGC</genome_strand>
        <mrna_strand>CCGCTGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310125" ref_strand="+" ref_description="SGN-E310125 [cLEZ-8-A9]">
      <seq>tcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcacattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51942" stop="53364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52242" g_stop="52284" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="189" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53064" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="240" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E310125" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52242" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</genome_strand>
        <mrna_strand>TCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCACATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463939" ref_strand="+" ref_description="SGN-E463939 [cPRO-16-O2]">
      <seq>gaacaactccgatctgccttcaaaggatggggaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaagggagctactaagagatggacaaaaagcaactttggtcttgtggagatagcttgtactagatctcctaaagaactgggtttggcgagggaagcttatcatgctcgcaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagaccaggtggacttgcgccttgctaaagcacaatctaaagtgctgcatgagaagatctccgataacgcttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51960" stop="53989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52260" g_stop="52284" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="171" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="390" r_length="219" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53689" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="502" r_length="112" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E463939" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52260" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACA</genome_strand>
        <mrna_strand>GAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGGAGCTACTAAGAGATGGACAAAAAGCAACTTTGGTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGGTTTGGCGAGGGAAGCTTATCATGCTCGCAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACCAGGTGGACTTGCGCCTTGCTAAAGCACAATCTAAAGTGCTGCATGAGAAGATCTCCGATAACGCTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408624" ref_strand="+" ref_description="SGN-E408624 [PPI-11-N11]">
      <seq>gaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgnatgcattaacaggagaggaacagaggaagatcatctgagccgagttatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52192" stop="54346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52492" g_stop="52631" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="359" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="572" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="54046" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="718" r_length="146" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E408624" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52492" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTG-ATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGC</genome_strand>
        <mrna_strand>GAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGNATGC-ATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453126" ref_strand="+" ref_description="SGN-E453126 [cSTS-18-P16]">
      <seq>gaacgaacgagaagttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaagtcttgtctaccctgagcactatttcgtgggaggtcttcgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52192" stop="54298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52492" g_stop="52631" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="359" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="572" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="53998" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="670" r_length="98" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E453126" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52492" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGC</genome_strand>
        <mrna_strand>GAACGAACGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAAGTCTTGTCTACCCTGAGCACTATTTCGTGGGAGGTCTTCGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581012" ref_strand="+" ref_description="SGN-E581012 [6255]">
      <seq>cgagaagttgattatatcaattttggctcatagaaaatgctgctcaacgcaatttgattcgacagacgtggtgctgaaacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcaggaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttggtggagatagcttgtactagatctcctaaataactggttttggcaatggaagcttatcatgctcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52200" stop="53476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52499" g_stop="52631" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53176" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="300" r_length="165" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E581012" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52499" e_stop="52631"/>
          <exon e_start="53014" e_stop="53176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGTTGATTATATCAATTTTGGCTCATAG-AAATGCGGCTCAACGCAAATTGATTCGACAGAC-TTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCA-GAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTT-GTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTA</genome_strand>
        <mrna_strand>CGAGAAGTTGATTATATCAATTTTGGCTCATAGAAAATGCTGCTCAACGCAATTTGATTCGACAGACGTGGTGCTGAAACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGGTGGAGATAGCTTGTACTAGATCTCCTAAATAACTGGTTTTGGCAATGGAAGCTTATCATGCTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480225" ref_strand="+" ref_description="SGN-E480225 [cSTD-13-O23]">
      <seq>agttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacacctggatccgtcagaacgtgatgcctatttggctaaggaagctactaagaaatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaactggaagatgangatgangtttgttgcactattgagggccccataaaaggtcttgtctaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52204" stop="54267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52504" g_stop="52631" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="348" r_length="220" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="561" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="53967" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="628" r_length="67" r_score="0.866"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E480225" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52504" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACA-CTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGA-GTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCG</genome_strand>
        <mrna_strand>AGTTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACCTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAAATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAACTGGAAGATGANGATGANGTTTGTTGCACTATTGAGGGCC-CCATAAAAGGTCTTGTCTACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479888" ref_strand="+" ref_description="SGN-E479888 [cSTD-11-D8]">
      <seq>ttgattatatcaattttggctcatagaaatgctgctcaacgcaaattgattcgacagaattatgctgagaattttggggaaaaactacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52206" stop="53912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52506" g_stop="52631" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="345" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53613" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="381" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E479888" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52506" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGG</genome_strand>
        <mrna_strand>TTGATTATATCAATTTTGGCTCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGAATTATGCTGAGAATTTTGGGGAAAAACTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453466" ref_strand="+" ref_description="SGN-E453466 [cSTS-20-G19]">
      <seq>tcaattttggcccatagaaatgctgctcaacgcaaattgattcgacagacttatgctgagacttttggggaaagactctaccttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggaccctggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaaaaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagataaatatggtgaggatatcctaaagcaattggaagatgagggatgaagtttgttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52215" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52515" g_stop="52631" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.83"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="340" r_length="220" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="553" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="53931" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="586" r_length="33" r_score="0.839"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E453466" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52515" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGG-AAGA-TCT-GCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAG-AACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGA-GGATG-AGTTTGTTGCAC</genome_strand>
        <mrna_strand>TCAATTTTGGCCCATAGAAATGCTGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAAGACTCTACCTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACCCTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAAAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATAAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGGATGAAGTTTGTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291421" ref_strand="+" ref_description="SGN-E291421 [cLET-2-P22]">
      <seq>aattttggctcatagaaatgcgggtcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgcgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagctgttggtacctcttgtgagctcctaccgatatgggggagatgaggtggagttgcgacttgctaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52217" stop="53946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52517" g_stop="52631" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="334" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53646" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="403" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E291421" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52517" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCA</genome_strand>
        <mrna_strand>AATTTTGGCTCATAGAAATGCGGGTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGCGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTGTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGAGTTGCGACTTGCTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478753" ref_strand="+" ref_description="SGN-E478753 [cSTD-6-J24]">
      <seq>gctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgagggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52239" stop="54432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52539" g_stop="52631" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="312" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="525" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="54132" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="758" r_length="233" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E478753" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52539" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGA-GGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAG</genome_strand>
        <mrna_strand>GCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482039" ref_strand="+" ref_description="SGN-E482039 [cSTD-20-J21]">
      <seq>gctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagaaggatagcattcctctgggtcgcgccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52239" stop="54427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52539" g_stop="52631" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="312" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="525" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="54127" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="752" r_length="227" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E482039" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52539" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGC</genome_strand>
        <mrna_strand>GCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAAGGATAGCATTCCTCTGGGTCGCGCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564452" ref_strand="+" ref_description="SGN-E564452 [2701]">
      <seq>ggaagatctacttaaagagttggacagagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgataggtcattagaattttagccacaaggagcaaagcgcaaactcaatgctactttgaatcattacaaagatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52283" stop="54072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52583" g_stop="52631" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="268" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53772" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="463" r_length="195" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E564452" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52583" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGC-AACTCAATGCTACTTTGAATCATTACAAAGATGAATAT</genome_strand>
        <mrna_strand>GGAAGATCTACTTAAAGAGTTGGACAGAGAACTTACCCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGCTAATATGGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGAT-AGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAAACTCAATGCTACTTTGAATCATTACAAAGATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317700" ref_strand="+" ref_description="SGN-E317700 [cTOB-8-B11]">
      <seq>cttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaagaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacggtgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52293" stop="53932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52593" g_stop="52631" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="258" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53632" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="313" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E317700" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52593" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGC</genome_strand>
        <mrna_strand>CTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAAGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGGTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239875" ref_strand="+" ref_description="SGN-E239875 [cLED-29-J2]">
      <seq>aagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52297" stop="53512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52597" g_stop="52631" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53212" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="234" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E239875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52597" e_stop="52631"/>
          <exon e_start="53014" e_stop="53212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACA</genome_strand>
        <mrna_strand>AAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268662" ref_strand="+" ref_description="SGN-E268662 [cLEM-9-O13]">
      <seq>gagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52309" stop="54234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52609" g_stop="52631" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="242" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="455" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53901" g_stop="53934" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="489" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E268662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52609" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGT</genome_strand>
        <mrna_strand>GAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558843" ref_strand="+" ref_description="SGN-E558843 [18246]">
      <seq>gagaacttacccatgattttgagaaattggtgctaatatggacactggatccgtccagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctggggtcgcgccattgccaaagatacaggaggagattatgagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52701" stop="54455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="243" r_length="220" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="456" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54155" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="712" r_length="256" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E558843" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGTGGTAGTATGGACACTGGATCC-TGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCT-GGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAAT</genome_strand>
        <mrna_strand>AAATTGGTGCTAATATGGACACTGGATCCGTCCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446018" ref_strand="+" ref_description="SGN-E446018 [cSTA-19-N7]">
      <seq>ggacactggatccgtcagaacgtgatgcctatttggctaacgaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggttattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52730" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53030" g_stop="53232" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="416" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="53921" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="437" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E446018" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53030" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAG</genome_strand>
        <mrna_strand>GGACACTGGATCCGTCAGAACGTGATGCCTATTTGGCTAACGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTTATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460621" ref_strand="+" ref_description="SGN-E460621 [cPRO-31-J4]">
      <seq>gtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttatcgctacnagggctgaggtggatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52745" stop="54416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53043" g_stop="53232" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="403" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54116" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="619" r_length="216" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E460621" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53043" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGT</genome_strand>
        <mrna_strand>GTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATCGCTACNAGGGCTGAGGTGGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462406" ref_strand="+" ref_description="SGN-E462406 [cPRO-11-H3]">
      <seq>gtcagaacgtgatgcctatttggctaaggaggctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctcttgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaagagcaaagcgcaactcaatgctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52745" stop="54049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53043" g_stop="53232" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53749" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="362" r_length="172" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E462406" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53043" e_stop="53232"/>
          <exon e_start="53578" e_stop="53749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTT</genome_strand>
        <mrna_strand>GTCAGAACGTGATGCCTATTTGGCTAAGGAGGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTTGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAAGAGCAAAGCGCAACTCAATGCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575362" ref_strand="+" ref_description="SGN-E575362 [34974]">
      <seq>gaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgntaacgagtaccagaagagggatagcattcctctggggtcgcgccattgcaaagatacaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52747" stop="54441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53047" g_stop="53232" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="399" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54141" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="640" r_length="241" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E575362" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53047" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCT-GGGTCGCGCCATTGCCAAAGATACAGGAG</genome_strand>
        <mrna_strand>GAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGNTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGGTCGCGCCATTG-CAAAGATACAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367441" ref_strand="+" ref_description="SGN-E367441 [cLPT-7-H16]">
      <seq>gctaatgaagctactaagacatggacaaaaagcaactttgtacttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcttaaagcaattggaagatgatgatgagtttgttgcactattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52765" stop="54237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53065" g_stop="53232" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="381" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="53937" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="418" r_length="37" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E367441" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53065" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="53937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAA</genome_strand>
        <mrna_strand>GCTAATGAAGCTACTAAGACATGGACAAAAAGCAACTTTGTACTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCTTAAAG..............................................................................................................CAATTGGAAGATGATGATGAGTTTGTTGCACTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601289" ref_strand="+" ref_description="SGN-E601289 [54323]">
      <seq>caaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52790" stop="54539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53090" g_stop="53232" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="356" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54239" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="693" r_length="337" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E601289" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53090" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGC</genome_strand>
        <mrna_strand>CAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584895" ref_strand="+" ref_description="SGN-E584895 [10816]">
      <seq>caaaaagcaactttgttcttgtggagatagcttgtactagatctcctaaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctacccttgagcactatttcgtggagggttcttcgtgatgccaattaacaggagagggaacagaggaagatcatctgagccgagttattgctaccagggctgaagtcgatctgaagactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52790" stop="54377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53090" g_stop="53232" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="356" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54077" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="537" r_length="181" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E584895" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53090" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCC-CGAGCACTATTTCGTGGA-GGTTCTTCGTGATG-CAATTAACAGGAGA-GGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATC</genome_strand>
        <mrna_strand>CAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACTAGATCTCCTAAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTTGAGCACTATTTCGTGGAGGGTTCTTCGTGATGCCAATTAACAGGAGAGGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACCAGGGCTGAAGTCGATCTGAAGACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569575" ref_strand="+" ref_description="SGN-E569575 [14032]">
      <seq>ggcacgaggaagactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttggtgagctcctaccgatatggaggagacgaggtggacttgcgccttggctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52838" stop="54464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53130" g_stop="53232" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="318" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54164" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="583" r_length="265" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E569575" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53130" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTT-GTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTT-GCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAG-AAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTG</genome_strand>
        <mrna_strand>GGCACGAGGAAGACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592378" ref_strand="+" ref_description="SGN-E592378 [46111]">
      <seq>aaagaactggttttggcaagggaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcngtaacgagtaccagaaaaaggatagcattcctctggggtcgcgccatttgccaaagatacacggacgaagattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52837" stop="54451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53137" g_stop="53232" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="309" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54151" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="564" r_length="255" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E592378" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53137" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCT-GGGTCGCGCCA-TTGCCAAAGATACA-GGA-GGAGATTATGA</genome_strand>
        <mrna_strand>AAAGAACTGGTTTTGGCAAGGGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCNGTAACGAGTACCAGAAAAAGGATAGCATTCCTCTGGGGTCGCGCCATTTGCCAAAGATACACGGACGAAGATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303283" ref_strand="+" ref_description="SGN-E303283 [cLEX-5-L14]">
      <seq>cttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52862" stop="54423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53162" g_stop="53232" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="284" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54123" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="507" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E303283" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53162" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCA</genome_strand>
        <mrna_strand>CTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572743" ref_strand="-" ref_description="SGN-E572743 [31946]">
      <seq>aatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaactggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactattttgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccgtctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="52883" stop="54653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53183" g_stop="53232" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="263" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53901" g_stop="54353" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="713" r_length="450" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E572743" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53183" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTG</genome_strand>
        <mrna_strand>AATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAACTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTTGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCC-GTCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573757" ref_strand="-" ref_description="SGN-E573757 [33118]">
      <seq>aatcttcgaagagacttgcttatcacatatgggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatggaggagacgaggtggacttgcgccttgctaaagcagaattctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttggataatgcatctttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53266" stop="54654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="258" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54354" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="710" r_length="452" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E573757" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573757" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAA-TCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAAT-ATGAATCTTTGTGC</genome_strand>
        <mrna_strand>CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGAGGAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATTCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGGATAATGCATCTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302521" ref_strand="+" ref_description="SGN-E302521 [cLEX-1-E5](-)">
      <seq>gtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53293" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53593" g_stop="53790" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54368" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="663" r_length="465" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E302521" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53593" e_stop="53790"/>
          <exon e_start="53901" e_stop="54368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTT</genome_strand>
        <mrna_strand>GTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542189" ref_strand="+" ref_description="SGN-E542189 [TUS-63-F23](-)">
      <seq>gatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatttctctaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53306" stop="54674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53606" g_stop="53790" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54384" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="665" r_length="480" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E542189" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53606" e_stop="53790"/>
          <exon e_start="53901" e_stop="54384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCAT</genome_strand>
        <mrna_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAAT-TTCTCTAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542191" ref_strand="+" ref_description="SGN-E542191 [TUS-63-F23]">
      <seq>gatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53306" stop="54674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53606" g_stop="53790" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54373" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="655" r_length="470" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="666"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E542191" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53606" e_stop="53790"/>
          <exon e_start="53901" e_stop="54373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTA</genome_strand>
        <mrna_strand>GATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300069" ref_strand="+" ref_description="SGN-E300069 [cLEW-11-O19]">
      <seq>atatgggggagatgatgtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattaccaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagccctatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53307" stop="54538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53607" g_stop="53790" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54238" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="520" r_length="335" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E300069" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53607" e_stop="53790"/>
          <exon e_start="53901" e_stop="54238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTA-CAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATG</genome_strand>
        <mrna_strand>ATATGGGGGAGATGATGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACCAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCCCTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601002" ref_strand="+" ref_description="SGN-E601002 [54026]">
      <seq>gagacgaggtggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtccttttttcgtgtgagaaactttgaatatgcatctttgtgcttgtctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53315" stop="54663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53615" g_stop="53790" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54363" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="637" r_length="461" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E601002" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53615" e_stop="53790"/>
          <exon e_start="53901" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGC-TGTCTAAAA</genome_strand>
        <mrna_strand>GAGACGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTT-TTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTTGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590749" ref_strand="-" ref_description="SGN-E590749 [44351]">
      <seq>cgaggtggacttgcgccttgctaaagcagaatctaaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaatttttagccaccaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaatattttctaataatttgcatcaattacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53320" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53619" g_stop="53790" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54392" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="663" r_length="488" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="676"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E590749" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590749" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53619" e_stop="53790"/>
          <exon e_start="53901" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTGGACTTGCGACTTGCTAAAGCAGAATCT-AAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAA-TTTTAGCCA-CAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>CGAGGTGGACTTGCGCCTTGCTAAAGCAGAATCTAAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTTAGCCACCAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCT-AAAATATTTTCTAATAATTTGCATCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593378" ref_strand="+" ref_description="SGN-E593378 [36606]">
      <seq>tggacttgcgccttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatatgttctaataatttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53324" stop="54685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53624" g_stop="53790" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54385" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="650" r_length="483" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E593378" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53624" e_stop="53790"/>
          <exon e_start="53901" e_stop="54385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATC</genome_strand>
        <mrna_strand>TGGACTTGCGCCTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATGTTCTAATAATTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354142" ref_strand="+" ref_description="SGN-E354142 [cTOS-16-J10]">
      <seq>cagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53345" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53645" g_stop="53790" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54399" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="642" r_length="496" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E354142" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53645" e_stop="53790"/>
          <exon e_start="53901" e_stop="54399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCT</genome_strand>
        <mrna_strand>CAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354173" ref_strand="+" ref_description="SGN-E354173 [cTOS-16-E5]">
      <seq>agaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagacgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattcttccatatatttcaaagttggcatgtggttgatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53346" stop="54582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53646" g_stop="53790" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54282" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="524" r_length="379" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E354173" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53646" e_stop="53790"/>
          <exon e_start="53901" e_stop="54282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTG</genome_strand>
        <mrna_strand>AGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGACGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTTCCATATATTTCAAAGTTGGCATGTGGTTGATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576545" ref_strand="+" ref_description="SGN-E576545 [59780]">
      <seq>ctccgataaggcttacagtgacgatgaggtcattagaattttagccacaagggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaatattttctaataatttgcatcaattacttatcatcttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53373" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53673" g_stop="53790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54392" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="607" r_length="488" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="646"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E576545" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53673" e_stop="53790"/>
          <exon e_start="53901" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAA-GGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>CTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCT-AAAATATTTTCTAATAATTTGCATCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478073" ref_strand="-" ref_description="SGN-E478073 [cSTD-3-C3]">
      <seq>taaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaactggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactattttgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccgtctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaataatttgcatcaattacttatcaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53379" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53679" g_stop="53790" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54392" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="601" r_length="489" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="627"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E478073" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478073" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53679" e_stop="53790"/>
          <exon e_start="53901" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>TAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAACTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTTGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCC-GTCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTAATAATTTGCATCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584921" ref_strand="-" ref_description="SGN-E584921 [10842]">
      <seq>aaggagcaaagcgcaactcaatgctactttgaatcattacggagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgactttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctggctcgcgccattgccaaagatacaggaggagattatgagaatatgctggtgcctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttacgtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53421" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53721" g_stop="53790" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54365" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="533" r_length="463" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E584921" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584921" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53721" e_stop="53790"/>
          <exon e_start="53901" e_stop="54365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTA-GTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAAT</genome_strand>
        <mrna_strand>AAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACGGAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGACTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGCTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGCCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTACGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287994" ref_strand="-" ref_description="SGN-E287994 [cLES-7-M4]">
      <seq>aaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53421" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53721" g_stop="53790" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54363" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="533" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="549"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E287994" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287994" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53721" e_stop="53790"/>
          <exon e_start="53901" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</genome_strand>
        <mrna_strand>AAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611265" ref_strand="-" ref_description="SGN-E611265 [61014]">
      <seq>tgctactttgaatcagtacaaagatgaatatgctgaggatatcctaaagcaattggaagatgaggatgagtttcttgcactattgagggccaccatacaaggtcttgtctaccctgagcactatttcctggagcttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgagctcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggttctgtttcacatgagcttttaagtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaataaaaaataaaaacacaataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53442" stop="54677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53742" g_stop="53790" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54398" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="545" r_length="496" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E611265" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611265" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53742" e_stop="53790"/>
          <exon e_start="53901" e_stop="54398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGG-TCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATC</genome_strand>
        <mrna_strand>TGCTACTTTGAATCAGTACAAAGATGAATATGCTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTCTTGCACTATTGAGGGCCACCATACAAGGTCTTGTCTACCCTGAGCACTATTTCCTGGAGCTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGCTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTAATAAAAAATAAAAAC-ACAATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715647" ref_strand="+" ref_description="SGN-E715647 [FB14DE08]">
      <seq>gctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgtaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53443" stop="54664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53743" g_stop="53790" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54363" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="511" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E715647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53743" e_stop="53790"/>
          <exon e_start="53901" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</genome_strand>
        <mrna_strand>GCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGTAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622007" ref_strand="-" ref_description="SGN-E622007 [72369]">
      <seq>tagttctcacaaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaataatttgcatcaattacttatcatcttgtatccattaccaatatcttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53454" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53751" g_stop="53790" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54392" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="530" r_length="490" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E622007" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622007" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53751" e_stop="53790"/>
          <exon e_start="53901" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>TAGTTCTCACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTAATAATTTGCATCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423817" ref_strand="-" ref_description="SGN-E423817 [STM-42-J15]">
      <seq>aaagatgaatatggtgaggatatcctaaagcaattggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaatattttctaataatttgcatcaattacttatcatcttgtatccattacaatatcttcaaatacgcctcagtttcaagcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53461" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53761" g_stop="53790" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54392" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="518" r_length="488" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E423817" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423817" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53761" e_stop="53790"/>
          <exon e_start="53901" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>AAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCT-AAAATATTTTCTAATAATTTGCATCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594591" ref_strand="+" ref_description="SGN-E594591 [37846]">
      <seq>ggatatcctaaagcaactggaagatgaggatgagtttgttgcactattgagggccaccataaaaggtcttgtctaccctgagcactattttgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccgtcttccatatgatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaataatttgcatcaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53599" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53778" g_stop="53790" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53901" g_stop="54399" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="510" r_length="497" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E594591" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53778" e_stop="53790"/>
          <exon e_start="53901" e_stop="54399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATAT-ATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCT</genome_strand>
        <mrna_strand>GGATATCCTAAAG..............................................................................................................CAACTGGAAGATGAGGATGAGTTTGTTGCACTATTGAGGGCCACCATAAAAGGTCTTGTCTACCCTGAGCACTATTTTGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCC-GTCTTCCATATGATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTAATAATTTGCATCAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326549" ref_strand="+" ref_description="SGN-E326549 [cTOC-17-H15]">
      <seq>tgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactnnnnannannaanannnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53632" stop="54689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53932" g_stop="54409" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="482"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E326549" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53932" e_stop="54409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</genome_strand>
        <mrna_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACT--NNNNANNANNAA-NANNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326501" ref_strand="+" ref_description="SGN-E326501 [cTOC-17-K3]">
      <seq>tgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53632" stop="54688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53932" g_stop="54388" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E326501" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53932" e_stop="54388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCAC</genome_strand>
        <mrna_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326609" ref_strand="+" ref_description="SGN-E326609 [cTOC-17-E17]">
      <seq>tgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgcatatgaatctttgtgctgtctaacaatgttctctaatgatttgcntccngctaatccaacaattatggttgaacattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53632" stop="54686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53932" g_stop="54382" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E326609" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53932" e_stop="54382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGC</genome_strand>
        <mrna_strand>TGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGCATATGAATCTTTGTGCTGTCTAACAATGTTCTCTAATGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237084" ref_strand="+" ref_description="SGN-E237084 [cLEL-7-C16](-)">
      <seq>cataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaaccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactacaataatcttcaactaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53645" stop="54706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53945" g_stop="54409" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="477"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E237084" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53945" e_stop="54409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</genome_strand>
        <mrna_strand>CATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAA-CCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589341" ref_strand="+" ref_description="SGN-E589341 [42913]">
      <seq>aaaaggtcttgtctaccctgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53648" stop="54663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53948" g_stop="54363" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E589341" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53948" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAA</genome_strand>
        <mrna_strand>AAAAGGTCTTGTCTACCCTGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601064" ref_strand="+" ref_description="SGN-E601064 [54090]">
      <seq>agaaaatatttttagacagcacaaagatgcatattcaaagtttctcacacgaaaaaaaggacttaaaagctcatgtgaaacagaccacactcaatcatcaaacagatgccaactctgaaatatatgggagatggcatatttattctggtcattataaaacagaagtgagccaatcctcctcattcctcctcttgtccaagtaaagccaccagcatattctcataatctcctcctgtatctttggcaatggcgcgacccagaggaatgctatccctcttctggtactcgttagcgatagtcttcagatcgacctcagcccttgtagcaataactcggctcagatgatcttcctctgttcctctcctgttaattgcatcacgaagaacctccacgaaatagtgctcagggtagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="54672" stop="53657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54372" g_stop="53957" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E601064" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54372" e_stop="53957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAACATTTTTAGACAGCACAAAGATTCATATTCAAAGTTTCTCACAAGAAGAAAAGGAC-TAAAAGCTCATGTGAAACAGACCACACTCAATCATCAAACACATGCCAACTCTGAAATATATGGGAGAATGGCATATTTATTCTGGTCATTATAAAACAGAAGTGAGCCAATCCGCTTCTTATTCCTCCTCTTGTCCAAGTAAAGCCACCAGCATATTCTCATAATCTCCTCCTGTATCTTTGGCAATGGCGCGACCCAGAGGAACGCTATCCCTCTTCTGGTACTCGTTAGCGATAGTCTTCAGATCGACCTCAGCCCTTGTAGCGATAACTCGGGTTAGATGATCTTCCTCTGTTCCTCTCCTGTTAATTGCATCACGAAGAACCTCCACGAAATAGTGCTCGGGGTAGACA</genome_strand>
        <mrna_strand>AGAAAATATTTTTAGACAGCACAAAGATGCATATTCAAAGTTTCTCACACGAAAAAAAGGACTTAAAAGCTCATGTGAAACAGACCACACTCAATCATCAAACAGATGCCAACTCTGAAATATATGGGAG-ATGGCATATTTATTCTGGTCATTATAAAACAGAAGTGAGCCAAT-C-CTCCTCATTCCTCCTCTTGTCCAAGTAAAGCCACCAGCATATTCTCATAATCTCCTCCTGTATCTTTGGCAATGGCGCGACCCAGAGGAATGCTATCCCTCTTCTGGTACTCGTTAGCGATAGTCTTCAGATCGACCTCAGCCCTTGTAGCAATAACTCGGCTCAGATGATCTTCCTCTGTTCCTCTCCTGTTAATTGCATCACGAAGAACCTCCACGAAATAGTGCTCAGGGTAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236886" ref_strand="+" ref_description="SGN-E236886 [cLEL-7-C6](-)">
      <seq>cttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactacaataatcttcaactaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53688" stop="54706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53988" g_stop="54409" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="435"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E236886" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53988" e_stop="54409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</genome_strand>
        <mrna_strand>CTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620484" ref_strand="+" ref_description="SGN-E620484 [71186]">
      <seq>ttttatgagccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaatattttctaataatttgcatcaattacttatcatcttgtatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53729" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54026" g_stop="54392" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="388"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E620484" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54026" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>TTTTATGAGCCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCT-AAAATATTTTCTAATAATTTGCATCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586534" ref_strand="-" ref_description="SGN-E586534 [60591]">
      <seq>ccgagttattgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaatattttctaataatttgcatcaattaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53735" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54035" g_stop="54392" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="370"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E586534" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586534" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54035" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>CCGAGTTATTGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCT-AAAATATTTTCTAATAATTTGCATCAATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604898" ref_strand="+" ref_description="SGN-E604898 [56915]">
      <seq>tcgatctgaagactatcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaataatttgcatcaataactaatcaaaaaacaataccactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53761" stop="54698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54061" g_stop="54382" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E604898" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54061" e_stop="54382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGC</genome_strand>
        <mrna_strand>TCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTAATAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586419" ref_strand="+" ref_description="SGN-E586419 [60474]">
      <seq>atcgctaacgagtaccagaagagggatagcattcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaataatttgcatcaattacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53775" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54075" g_stop="54403" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E586419" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54075" e_stop="54403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAA</genome_strand>
        <mrna_strand>ATCGCTAACGAGTACCAGAAGAGGGATAGCATTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTAATAATTTGCATCAATTACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605479" ref_strand="+" ref_description="SGN-E605479 [21400]">
      <seq>acaagatgataagtaaattgatgcaaattattagaaaatatatttagacagcacaaagatgcatattcaaagtttctcacacgaaaaaaaggacttaaaagctcatgtgaaacagaccacactcaatcatcaaacagatgccaactctgaaatatatgggagatggcatatttattctggtcattataaaacagaagtgagccaatcctcctcattcctcctcttgtccaagtaaagccaccagcatattctcataatctcctcctgtatctttggcaatggcgcgacccagaggaatgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="54691" stop="53798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54387" g_stop="54098" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="305" r_length="288" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E605479" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54387" e_stop="54098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGCAAATCATTAGAGAACATTTTTAGACAGCACAAAGATTCATATTCAAAGTTTCTCACAAGAAGAAAAGGAC-TAAAAGCTCATGTGAAACAGACCACACTCAATCATCAAACACATGCCAACTCTGAAATATATGGGAGAATGGCATATTTATTCTGGTCATTATAAAACAGAAGTGAGCCAATCCGCTTCTTATTCCTCCTCTTGTCCAAGTAAAGCCACCAGCATATTCTCATAATCTCCTCCTGTATCTTTGGCAATGGCGCGACCCAGAGGAACGCTATCC</genome_strand>
        <mrna_strand>TTGATGCAAATTATTAGAAAATATATTTAGACAGCACAAAGATGCATATTCAAAGTTTCTCACACGAAAAAAAGGACTTAAAAGCTCATGTGAAACAGACCACACTCAATCATCAAACAGATGCCAACTCTGAAATATATGGGAG-ATGGCATATTTATTCTGGTCATTATAAAACAGAAGTGAGCCAAT-C-CTCCTCATTCCTCCTCTTGTCCAAGTAAAGCCACCAGCATATTCTCATAATCTCCTCCTGTATCTTTGGCAATGGCGCGACCCAGAGGAATGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620125" ref_strand="+" ref_description="SGN-E620125 [70823]">
      <seq>aaaatattttagacagcacaaagatgcatattcaaagtttctcacacgaagaaaaggactaaaagctcatgtgaaacagaccacactcaatcatcaaacagatgccaactctgaaatatatgggagatggcatatttattctggtcattataaaacagaagtgagccaatcctcctcattcctcctcttgtccaagtaaagccaccagcatattctcataatctcctcctgtatctttggcaatggcgcgacccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="54668" stop="53811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54370" g_stop="54111" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-E620125" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54370" e_stop="54111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACATTTTTAGACAGCACAAAGATTCATATTCAAAGTTTCTCACAAGAAGAAAAGGACTAAAAGCTCATGTGAAACAGACCACACTCAATCATCAAACACATGCCAACTCTGAAATATATGGGAGAATGGCATATTTATTCTGGTCATTATAAAACAGAAGTGAGCCAATCCGCTTCTTATTCCTCCTCTTGTCCAAGTAAAGCCACCAGCATATTCTCATAATCTCCTCCTGTATCTTTGGCAATGGCGCGACCCAG</genome_strand>
        <mrna_strand>AAAATA-TTTTAGACAGCACAAAGATGCATATTCAAAGTTTCTCACACGAAGAAAAGGACTAAAAGCTCATGTGAAACAGACCACACTCAATCATCAAACAGATGCCAACTCTGAAATATATGGGAG-ATGGCATATTTATTCTGGTCATTATAAAACAGAAGTGAGCCAAT-C-CTCCTCATTCCTCCTCTTGTCCAAGTAAAGCCACCAGCATATTCTCATAATCTCCTCCTGTATCTTTGGCAATGGCGCGACCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589524" ref_strand="-" ref_description="SGN-E589524 [43100]">
      <seq>cgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtcctttttttccgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaaaaaaaagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53817" stop="54674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54117" g_stop="54373" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="272"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E589524" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589524" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54117" e_stop="54373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTT-CTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTA</genome_strand>
        <mrna_strand>CGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATGAGGAG-G-ATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624040" ref_strand="+" ref_description="SGN-E624040 [89186]">
      <seq>tgagaatatgctggtggctttacttggacaagaggaggaatgaggaggattggctcacttctgttttataatgaccagaataaatatgccatctcccatatatttcagagttggcatctgtttgatgattgagtgtggtctgtttcacatgagcttttaagtcctttttttcgtgtgagaaactttgaatatgcatctttgtgctgtctaaaaatattttctaataatttgcatcaattacttatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-YQ1U5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="53849" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54149" g_stop="54392" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="247" polyA_stop="256"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-E624040" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54149" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTT-AGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACA</genome_strand>
        <mrna_strand>TGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAAT--GAGGAGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCA-TCTCCCATATATTTCAGAGTTGGCATCTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAAGTCCTTTTTTTCGTGTGAGAAACTTTGAATATGCATCTTTGTGCTGTCTAAAAATATTTTCTAATAATTTGCATCAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>289</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3233" PGL_stop="2358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3233" e_stop="2358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="3233" e_stop="2358" e_length="876"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3225" stop="2895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2975" stop="2358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAGAGTTGGGACGTTTATAATTTCTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</gDNA_template>
            <first_frame> H  A  S  I  L  F  *  W  Q  N  Y  S  *  T  A  Q  Y  N  A  T  H  L  G  L  G  W  L  M  T  C  L  C  *  S  N  L  F  S  R  D  L  V  N  F  F  L  I  L  Y  F  I  Y  C  Y  N  S  K  N  N  S  F  I  T  V  P  F  *  F  I  L  E  K  A  N  I  L  R  *  Q  *  L  V  *  *  S  *  F  C  P  Y  *  I  W  F  K  K  N  E  L  K  L  R  N  F  *  E  V  K  *  E  Y  D  R  I  F  F  L  F  F  L  D  L  L  K  W  T  S  K  *  V  H  L  K  E  E  M  *  T  N  *  *  K  Q  S  K  *  V  L  K  P  C  K  I  T  K  I  *  N  L  L  Q  F  V  R  V  W  L  *  F  I  I  G  P  A  I  *  S  V  L  A  Q  T  N  W  V  G  L  K  *  G  S  V  H  L  L  F  *  S  V  *  M  *  F  N  L  F  N  C  R  S  Y  Y  D  Y  G  R  T  N  V  Y  P  Y  R  K  L  L  G  L  L  R  I  E  L  G  R  L  *  F  L  L  S  F  Y  C  L  A  Y  P  I  E  E  F  R  H  I  Y  I  L  S  V  K  N  S  S  H  L  V  F  T  I  I  N  H  I  F  F  Q  C  S  Q  I  C  V  *  Q  *  *  S  *  F  G  L </first_frame>
            <second_frame>  M  L  Q  F  C  S  S  G  K  I  I  V  K  P  P  N  T  T  Q  P  I  *  V  W  V  G  *  *  P  A  Y  V  S  L  I  Y  F  L  E  I  L  L  I  F  F  *  F  Y  T  L  Y  I  A  I  I  L  K  I  I  V  L  L  L  S  L  F  S  S  F  *  K  R  Q  I  Y  *  D  N  S  S  *  Y  S  E  V  N  F  V  L  I  K  Y  G  S  K  R  M  N  *  S  L  E  I  S  K  K  L  N  E  S  M  I  E  F  F  F  C  S  F  L  I  C  *  N  G  Q  V  N  R  Y  I  *  K  R  K  C  R  Q  I  N  R  N  R  A  S  R  Y  *  N  L  V  K  *  Q  R  Y  E  I  Y  Y  N  L  C  G  F  G  Y  D  S  L  L  V  Q  L  S  N  L  F  W  P  K  Q  I  G  L  G  *  N  K  V  R  F  I  Y  Y  F  D  P  S  K  C  N  S  I  C  S  I  A  G  L  I  M  I  M  G  E  L  M  S  I  P  T  E  S  C  *  V  C  Y  A  *  S  W  D  V  Y  N  F  F  C  L  F  I  V  W  P  I  Q  L  K  N  F  D  I  Y  I  S  Y  R  *  R  I  R  H  I  W  C  L  Q  *  *  T  I  Y  F  F  N  V  H  R  F  V  S  N  N  N  N  H  S  L  V   </second_frame>
            <third_frame>   C  F  N  F  V  L  V  A  K  L  *  L  N  R  P  I  Q  R  N  P  F  R  F  G  L  V  N  D  L  L  M  L  V  *  F  I  F  *  R  S  C  *  F  F  F  D  F  I  L  Y  I  L  L  *  F  *  K  *  *  F  Y  Y  C  P  F  L  V  H  F  R  K  G  K  Y  I  K  I  T  V  V  S  I  V  K  L  I  L  S  L  L  N  M  V  Q  K  E  *  I  K  A  *  K  F  L  R  S  *  M  R  V  *  *  N  F  F  F  V  L  S  *  F  V  K  M  D  K  *  I  G  T  S  K  R  G  N  V  D  K  L  I  E  T  E  Q  V  G  T  K  T  L  *  N  N  K  D  M  K  S  T  T  I  C  A  G  L  V  M  I  H  Y  W  S  S  Y  L  I  C  F  G  P  N  K  L  G  W  V  E  I  R  F  G  S  F  I  I  L  I  R  L  N  V  I  Q  S  V  Q  L  P  V  L  L  *  L  W  A  N  *  C  L  S  L  P  K  A  V  R  F  A  T  H  R  V  G  T  F  I  I  S  S  V  F  L  L  S  G  L  S  N  *  R  I  S  T  Y  I  Y  L  I  G  E  E  F  V  T  F  G  V  Y  N  N  K  P  Y  I  F  S  M  F  T  D  L  C  L  T  I  I  I  I  V  W  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9074" PGL_stop="3279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9074" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9074" e_stop="8940" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="0.978">
            <gDNA_exon_boundary e_start="4910" e_stop="4656" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9074" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9062" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9059" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9055" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9055" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9054" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9051" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9051" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9050" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9050" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9048" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9045" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9043" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9039" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9035" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9035" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9034" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9030" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9024" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9022" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9020" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9020" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9018" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9018" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9017" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9011" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9007" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8988" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8982" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8981" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8821" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7902" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7901" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7900" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589866" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7748" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7745" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5461" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559909" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5261"/>
              <exon start="5168" stop="5070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5388" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5316" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5281" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5098" stop="4982"/>
              <exon start="4910" stop="4656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586113" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTG</gDNA_template>
            <first_frame> I  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *  G  L  T  S  F  C  C  T  *  P  E  L  L  L  M  L  H  L  H  S  G  I  M  E  W  F  C  D  I  K  I  S  T  V  G  F  *  L  R  F   </first_frame>
            <second_frame>  Y  S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  V  *  L  L  F  V  V  L  N  Q  N  F  F  *  C  Y  I  C  I  L  V  L  W  N  G  F  V  I  L  R  F  Q  L  L  V  F  N  Y  A  S  </second_frame>
            <third_frame>   I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  R  F  N  F  F  L  L  Y  L  T  R  T  S  F  D  V  T  S  A  F  W  Y  Y  G  M  V  L  *  Y  *  D  F  N  C  W  F  L  I  T  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9074" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="3914"/>
          </exon_coordinates>
        </AGS_line>
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              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8981" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8821" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7902" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7745" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5261"/>
              <exon start="5168" stop="5070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5325" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591522" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4777"/>
              <exon start="4528" stop="4379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4512" stop="3914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</gDNA_template>
            <first_frame> I  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  V  R  I  R  K  L  M  N  Y  *  S  R  T  R  L  M  P  F  G  L  T  V  I  S  F  L  S  *  L  H  I  L  P  *  E  G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L  I  S  M  S  S  K  G  S  G  L  T  I  K  I  L  Q  T  *  F  F  I  H  L  K  M  N  </first_frame>
            <second_frame>  Y  S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R  *  G  *  E  N  S  *  I  T  E  V  A  L  G  *  C  P  L  V  *  Q  S  F  R  F  C  L  N  F  I  F  C  P  E  K  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I  *  S  Q  *  V  P  R  V  V  V  *  P  *  R  S  C  R  L  N  S  L  F  I  L  K  *  T </second_frame>
            <third_frame>   I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I  G  K  D  K  K  T  H  E  L  L  K  S  H  *  V  N  A  L  W  S  D  S  H  F  V  F  V  L  T  S  Y  S  A  L  R  R  C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  N  L  N  E  F  Q  G  *  W  F  D  H  K  D  L  A  D  L  I  L  Y  S  S  *  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9067" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5165" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="4212"/>
            <exon e_start="4105" e_stop="3993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="0.993"/>
          <exon-intron don_prob="0.606" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9067" e_stop="8940" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="5165" e_stop="4982" e_length="184"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="4528" e_stop="4212" e_length="317"/>
          </exon>
          <intron i_serial="9" don_prob="0.606" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4211" i_stop="4106" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="0.982">
            <gDNA_exon_boundary e_start="4105" e_stop="3993" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9051" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9051" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9050" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9043" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9039" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9034" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9020" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9018" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9018" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9011" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8981" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5323" stop="5261"/>
              <exon start="5165" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4212"/>
              <exon start="4105" stop="3993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4777"/>
              <exon start="4528" stop="4379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCG : GTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTA</gDNA_template>
            <first_frame> S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R :   C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  </first_frame>
            <second_frame>  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  S :   A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I   : G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L </second_frame>
            <third_frame>   K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  :  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5165" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9068" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5165" e_stop="4982"/>
            <exon e_start="4910" e_stop="4656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9068" e_stop="8940" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5165" e_stop="4982" e_length="184"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="0.949">
            <gDNA_exon_boundary e_start="4910" e_stop="4656" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9068" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5165" stop="4982"/>
              <exon start="4910" stop="4769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9051" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9051" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9050" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9043" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9039" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9034" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9020" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9018" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9018" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9016" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9011" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8981" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5098" stop="4982"/>
              <exon start="4910" stop="4656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586113" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTG</gDNA_template>
            <first_frame> L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *  G  L  T  S  F  C  C  T  *  P  E  L  L  L  M  L  H  L  H  S  G  I  M  E  W  F  C  D  I  K  I  S  T  V  G  F  *  L  R  F   </first_frame>
            <second_frame>  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  V  *  L  L  F  V  V  L  N  Q  N  F  F  *  C  Y  I  C  I  L  V  L  W  N  G  F  V  I  L  R  F  Q  L  L  V  F  N  Y  A  S  </second_frame>
            <third_frame>   Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  S :   A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  R  F  N  F  F  L  L  Y  L  T  R  T  S  F  D  V  T  S  A  F  W  Y  Y  G  M  V  L  *  Y  *  D  F  N  C  W  F  L  I  T  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5165" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="9056" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="8183" e_stop="8145"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.267" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="9056" e_stop="8940" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.905">
            <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8183" e_stop="8145" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.267" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="7" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="4910" e_stop="4656" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9056" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="8183" stop="8145"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9053" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="8183" stop="8145"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7904" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7902" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7901" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7900" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589866" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7748" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7745" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5461" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559909" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5261"/>
              <exon start="5168" stop="5070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5388" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5316" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5281" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5098" stop="4982"/>
              <exon start="4910" stop="4656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586113" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTG</gDNA_template>
            <first_frame> P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : A  L  A  G  T  C  T  V  R  *  K  D  A   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *  G  L  T  S  F  C  C  T  *  P  E  L  L  L  M  L  H  L  H  S  G  I  M  E  W  F  C  D  I  K  I  S  T  V  G  F  *  L  R  F   </first_frame>
            <second_frame>  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  L  *  P  V  P  A  L  L  G  R  R  M  Q  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  V  *  L  L  F  V  V  L  N  Q  N  F  F  *  C  Y  I  C  I  L  V  L  W  N  G  F  V  I  L  R  F  Q  L  L  V  F  N  Y  A  S  </second_frame>
            <third_frame>   I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  S :   F  S  R  Y  L  H  C  *  V  E  G  C  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  R  F  N  F  F  L  L  Y  L  T  R  T  S  F  D  V  T  S  A  F  W  Y  Y  G  M  V  L  *  Y  *  D  F  N  C  W  F  L  I  T  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8158" stop="8145"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEGCRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7785" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4835"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGKSWFDLRSTALMLRELTKVEFWSLYKGQKGGQEAAVLDQGIVIIGTRILEGEAEVEVEVEVGEGMSVISTVEETEITVIGAEAAALITTEVVGEVNMMRTGAAEVGLMEEVPPLLAVAPVLEGALLHEEQLLPGMLVQMDVITRTGLQLQRVYHLGVDVLVLAAPCHVLMLMIEEQGRSHSCNLALVDAAYQDIPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="8183" stop="8159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRSFSRYLHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="9072" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="3279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9072" e_stop="8940" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7731" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="8" e_score="0.999">
            <gDNA_exon_boundary e_start="4528" e_stop="3279" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9072" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="3279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9039" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7745" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5261"/>
              <exon start="5168" stop="5070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5325" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591522" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4777"/>
              <exon start="4528" stop="4379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4512" stop="3914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGAA</gDNA_template>
            <first_frame> I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D  G  N  *  S  H  *  Y  L  D  G  S  L  C  C  C  C  S  H  *  Y  L  V  T  G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I  G  K  D  K  K  T  H  E  L  L  K  S  H  *  V  N  A  L  W  S  D  S  H  F  V  F  V  L  T  S  Y  S  A  L  R  R  C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  N  L  N  E  F  Q  G  *  W  F  D  H  K  D  L  A  D  L  I  L  Y  S  S  *  N  E  Q  I  I  L  N  F  P  I  T  N  T  L  F  *  C  L  F  A  L  W  S  *  K  C  S  S  S  T  *  H  T  P  I  Q  C  M  I  S  C  L  Y  L  *  S  S  S  *  Y  L  *  I  C  C  C  C  W  L  I  A  Y  Q  T  D  P  A  F  W  C  *  W  F  A  *  C  V  *  L  D  P  L  H  V  P  S  E  G  A  *  A  V  C  L  *  C  A  D  C  H  V  S  S  G  M  H  Q  S  G  F  F  F  I  E  M  C  A  H  Y  Q  F  G  D  L  I  D  S  C  E  M  F  N  L  S  N  I  T  F  F  D  Y  I  F  K  C  L  E  F  V  S  L  D  S  G  *  I  T  S  F  R  C  S  P  Y  R  I  C  V  L  S  Y  E  S  C  S  Y  V  L  V  T  I  L  N  N  L  F  L  L  N  G  *  V  *  L  V  W  R  G  S  W  G  R  *  L  D  I  N  L  V  F  Y  L  L  R  </first_frame>
            <second_frame>  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  V  T  D  H  I  N  I  W  M  V  A  Y  V  A  V  V  H  T  D  I  W  S  Q  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  V  R  I  R  K  L  M  N  Y  *  S  R  T  R  L  M  P  F  G  L  T  V  I  S  F  L  S  *  L  H  I  L  P  *  E  G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L  I  S  M  S  S  K  G  S  G  L  T  I  K  I  L  Q  T  *  F  F  I  H  L  K  M  N  K  *  Y  *  I  S  Q  S  L  I  P  C  S  S  V  Y  L  L  Y  G  L  E  S  V  L  Q  V  H  S  T  P  P  Y  S  A  *  F  H  A  Y  T  C  E  V  L  A  D  I  C  R  S  V  V  A  V  G  *  L  L  I  K  L  I  L  L  F  G  V  D  G  L  L  D  V  F  N  W  I  L  C  T  C  L  L  K  E  L  K  L  C  V  Y  D  V  L  T  A  M  S  P  L  V  C  T  N  L  G  S  F  S  S  R  C  V  H  I  I  N  L  E  I  *  S  I  P  V  R  C  L  I  Y  R  T  *  P  S  L  I  T  S  S  S  V  W  N  L  C  P  W  T  A  V  K  L  P  H  L  G  V  P  H  T  E  F  V  S  S  H  M  S  L  V  R  M  C  L  L  P  Y  *  T  I  S  F  C  *  M  A  E  F  D  L  F  G  E  E  V  G  E  G  N  *  I  *  I  W  S  F  T  C  Y  E </second_frame>
            <third_frame>   S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W  *  L  I  T  L  I  F  G  W  *  P  M  L  L  L  F  T  L  I  F  G  H  R  K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R  *  G  *  E  N  S  *  I  T  E  V  A  L  G  *  C  P  L  V  *  Q  S  F  R  F  C  L  N  F  I  F  C  P  E  K  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I  *  S  Q  *  V  P  R  V  V  V  *  P  *  R  S  C  R  L  N  S  L  F  I  L  K  *  T  N  N  I  K  F  P  N  H  *  Y  L  V  L  V  S  I  C  F  M  V  L  K  V  F  F  K  Y  I  A  H  P  H  T  V  H  D  F  M  L  I  L  V  K  F  *  L  I  S  V  D  L  L  L  L  L  A  D  C  L  S  N  *  S  C  F  L  V  L  M  V  C  L  M  C  L  I  G  S  S  A  R  A  F  *  R  S  L  S  C  V  F  M  M  C  *  L  P  C  L  L  W  Y  A  P  I  W  V  L  F  H  R  D  V  C  T  L  S  I  W  R  F  D  R  F  L  *  D  V  *  F  I  E  H  N  L  L  *  L  H  L  Q  V  S  G  I  C  V  P  G  Q  R  L  N  Y  L  I  *  V  F  P  I  Q  N  L  C  P  L  I  *  V  L  F  V  C  A  C  Y  H  I  E  Q  S  L  F  A  K  W  L  S  L  T  C  L  E  R  K  L  G  K  V  T  R  Y  K  F  G  L  L  L  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7785" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGKSWFDLRSTALMLRELTKVEFWSLYKGQKGGQEAAVLDQGIVIIGTRILEGEAEVEVEVEVGEGMSVISTVEETEITVIGAEAAALITTEVVGEVNMMRTGAAEVGLMEEVPPLLAVAPVLEGALLHEEQLLPGMLVQMDVITRTGLQLQRVYHLGVDVLVLAAPCHVLMLMIEEQGRSHSCNLALVDAAYQDIPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7810" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLVTGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3743" stop="3549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIKLILLFGVDGLLDVFNWILCTCLLKELKLCVYDVLTAMSPLVCTNLGSFSSRCVHIINLEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="7531" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5165" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="4212"/>
            <exon e_start="4105" e_stop="3993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.988"/>
          <exon-intron don_prob="0.849" acc_prob="0.000" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="0.993"/>
          <exon-intron don_prob="0.606" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="7531" e_stop="7446" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5260" i_stop="5166" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="5165" e_stop="4982" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="4528" e_stop="4212" e_length="317"/>
          </exon>
          <intron i_serial="5" don_prob="0.606" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4211" i_stop="4106" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="4105" e_stop="3993" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7531" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5165" stop="5027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5323" stop="5261"/>
              <exon start="5165" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="4212"/>
              <exon start="4105" stop="3993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4777"/>
              <exon start="4528" stop="4379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : TGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCG : GTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTA</gDNA_template>
            <first_frame> V  F  V  I  S  D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  S :   A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I   : G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L </first_frame>
            <second_frame>  F  L  *  S  V  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  :  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I   </second_frame>
            <third_frame>   F  C  D  Q  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R :   C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7521" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5165" stop="4982"/>
                    <exon start="4910" stop="4835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVTKVEFWSLYKGQKGGQEAAVLDQGIVIIGTRILEGEAEVEVEVEVGEGMSVISTVEETEITVIGAEAAALITTEVVGEVNMMRTGAAEVGLMEVPPLLAVAPVLEGALLHEEQLLPGMLVQMDVITRTGLQLQRVYHLGVDVLVLAAPCHVLMLMIEEQGRSHSCNLALVDAAYQDIPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7531" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5165" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFVISDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="7" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25867" PGL_stop="26354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25867" e_stop="26354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="25867" e_stop="26354" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25867" stop="26354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAGCCAATGACAAAGAAGTTTAGGAAAGTGACTTGCCTATACAAAAGGCACTTTCCTAAACACTTTTCTTTAGTTTTTGCAACTTGACAAACACTTTTCAAGAACTCTTGCAAAGACTAACACAAAGCATATGCAGAATCATTCCTAGGACAACAGCAACATCTGAAGCCTTTCGTCTAGTTGTCTAGGAATTTATTCTCTTGTTCTCAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGAGTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  A  E  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  S  Q  *  Q  R  S  L  G  K  *  L  A  Y  T  K  G  T  F  L  N  T  F  L  *  F  L  Q  L  D  K  H  F  S  R  T  L  A  K  T  N  T  K  H  M  Q  N  H  S  *  D  N  S  N  I  *  S  L  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  E  C  F  S  T  *  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  D  *   </first_frame>
            <second_frame>  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  A  N  D  K  E  V  *  E  S  D  L  P  I  Q  K  A  L  S  *  T  L  F  F  S  F  C  N  L  T  N  T  F  Q  E  L  L  Q  R  L  T  Q  S  I  C  R  I  I  P  R  T  T  A  T  S  E  A  F  R  L  V  V  *  E  F  I  L  L  F  S  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  S  V  F  L  L  R  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  R  F  C  F  *  R  L  V  K  T  I  E  </second_frame>
            <third_frame>   W  R  W  C  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  T  K  K  F  R  K  V  T  C  L  Y  K  R  H  F  P  K  H  F  S  L  V  F  A  T  *  Q  T  L  F  K  N  S  C  K  D  *  H  K  A  Y  A  E  S  F  L  G  Q  Q  Q  H  L  K  P  F  V  *  L  S  R  N  L  F  S  C  S  Q  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  V  F  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27031" PGL_stop="27826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27031" e_stop="27826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="27031" e_stop="27826" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27031" stop="27826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGAT</gDNA_template>
            <first_frame> T  I  F  *  L  L  A  N  D  D  S  S  H  N  F  *  F  P  S  V  Y  Y  I  L  I  S  F  R  G  Y  I  C  Y  H  *  G  S  N  C  S  S  K  M  E  S  N  F  P  K  P  E  Q  F  F  I  G  F  V  D  A  K  W  T  C  W  Y  Q  *  H  W  S  G  E  F  *  C  M  *  G  L  V  W  S  Y  M  F  *  R  *  G  I  H  V  E  Y  D  K  C  W  Y  Q  W  H  T  V  *  F  S  I  F  I  T  P  F  S  W  L  S  *  S  *  H  Q  Q  L  L  W  H  Y  P  T  *  N  R  K  A  H  *  S  W  L  S  *  L  V  L  Q  S  D  F  G  H  N  P  T  T  N  R  L  I  N  K  A  *  D  P  P  H  L  *  Q  P  I  I  W  F  H  S  G  G  N  R  S  P  K  V  F  D  *  A  S  F  E  F  *  L  S  *  W  F  N  S  C  F  I  G  D  F  G  Q  I  V  L  F  A  S  V  *  E  P  S  F  W  F  H  S  S  R  N  R  E  T  C  Q  S  P  S  T  F  S  *  F  K  Q  V  N  W  S  Y  S  S  R  N  W  K  T  C  Q  S  P  S  T  F  S  *  </first_frame>
            <second_frame>  Q  S  F  N  Y  *  Q  M  M  I  V  P  T  I  F  N  F  L  Q  C  I  T  F  L  Y  L  F  A  V  T  F  A  T  T  E  E  A  T  A  L  L  K  W  K  A  T  F  Q  N  Q  N  N  S  L  L  A  S  W  T  L  S  G  P  A  G  T  N  S  I  G  A  A  S  S  N  A  C  E  D  W  Y  G  V  T  C  S  N  G  R  V  Y  M  L  N  M  T  N  A  G  I  N  G  T  L  Y  D  F  P  F  S  S  L  P  F  L  G  Y  L  D  L  S  I  N  N  F  S  G  T  I  P  P  E  I  G  K  L  T  N  L  G  Y  L  D  L  S  F  N  Q  I  S  G  I  I  P  P  Q  I  G  S  L  T  K  L  E  T  L  H  I  F  N  S  Q  L  Y  G  S  I  P  E  E  I  G  H  L  R  S  L  T  E  L  A  L  N  S  N  S  L  S  G  S  I  P  A  S  L  G  T  L  D  K  L  S  Y  L  H  L  Y  E  N  H  L  S  G  S  I  P  A  E  I  G  K  L  V  N  L  L  Q  L  F  L  D  S  N  K  L  T  G  H  I  P  P  E  I  G  K  L  V  N  L  L  Q  L  F  L  D </second_frame>
            <third_frame>   N  L  L  I  I  S  K  *  *  *  F  P  Q  F  L  I  S  F  S  V  L  H  S  Y  I  F  S  R  L  H  L  L  P  L  R  K  Q  L  L  F  *  N  G  K  Q  L  S  K  T  R  T  I  L  Y  W  L  R  G  R  *  V  D  L  L  V  P  I  A  L  E  R  R  V  L  M  H  V  R  T  G  M  E  L  H  V  L  T  V  G  Y  T  C  *  I  *  Q  M  L  V  S  M  A  H  C  M  I  F  H  F  H  H  S  L  F  L  V  I  L  I  L  A  S  T  T  S  L  A  L  S  H  L  K  *  E  S  S  L  I  L  A  I  L  T  C  P  S  I  R  F  R  A  *  S  H  H  K  S  A  H  *  Q  S  L  R  P  S  T  S  L  T  A  N  Y  M  V  P  F  R  R  K  *  V  T  *  G  L  *  L  S  *  L  *  I  L  T  L  L  V  V  Q  F  L  L  H  W  G  L  W  T  N  C  L  I  C  I  C  M  R  T  I  F  L  V  P  F  Q  Q  K  *  G  N  L  S  I  S  F  N  F  F  L  I  Q  T  S  *  L  V  I  F  L  Q  K  L  E  N  L  S  I  S  F  N  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27050" stop="27826"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMMIVPTIFNFLQCITFLYLFAVTFATTEEATALLKWKATFQNQNNSLLASWTLSGPAGTNSIGAASSNACEDWYGVTCSNGRVYMLNMTNAGINGTLYDFPFSSLPFLGYLDLSINNFSGTIPPEIGKLTNLGYLDLSFNQISGIIPPQIGSLTKLETLHIFNSQLYGSIPEEIGHLRSLTELALNSNSLSGSIPASLGTLDKLSYLHLYENHLSGSIPAEIGKLVNLLQLFLDSNKLTGHIPPEIGKLVNLLQLFLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28075" PGL_stop="29138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28075" e_stop="29138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="28075" e_stop="29138" e_length="1064"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28075" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28426" stop="29138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTATCTGAAGCTTTTGGCATCCATCCCGAGCTGAAGTTCATTGATTTGAGCGACAATGATTTTCATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAGCAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAATTTAGACTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAGATAGGGGTATAACTCATCTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAATACCCCCAGTTAACCAATTTGAAGTACTTGGTGAACTTGAATCTGTCCCACAACAGCCTTTCTGGCCACATTCCTGAAGAATTTGATAGTTTGACTGGTTTGCAGGATGTTGTATTGTCATACAACGAGTTGGAAGGGCCAATCCCTAATAATAATGCTTTTATGAATGCCTCATTAGAAGGTAATAAAGGTCTTTGTGGCAATGTGACTGGATTCCAACCTTGCGAAAGGCCATCTTCTATGGTGAAGAAGCACTCAATGGCGAAGGGACATAAACTCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGACGGGATTCCATTGACAAAGATGATGGTCTGCTTTCAATATCCTCATTACATGGAAATTCATTATACTGGGATATCTTAATAGCCACAGAGGAGTTTGATGCAACATTTTGCA</gDNA_template>
            <first_frame> L  E  Q  L  L  Q  F  Q  K  G  S  L  Q  *  Q  Q  L  Y  W  E  F  I  *  S  F  W  H  P  S  R  A  E  V  H  *  F  E  R  Q  *  F  S  W  R  T  Q  Q  Q  L  G  E  I  Q  E  F  D  Y  F  L  D  S  Q  K  *  H  *  R  *  H  T  T  R  D  W  K  H  Q  R  S  F  G  T  *  S  F  S  K  S  F  G  W  A  N  T  R  G  I  W  K  I  N  L  S  G  *  A  L  I  E  K  Q  P  N  F  W  Q  Y  T  S  G  T  W  V  T  D  K  F  R  L  P  *  S  I  R  Q  *  I  E  W  V  D  P  N  V  F  R  R  L  P  T  P  V  S  L  E  P  Q  L  *  Q  V  W  P  E  N  S  K  G  D  R  G  I  T  H  L  N  V  L  D  L  S  H  N  L  L  V  G  E  I  P  P  V  N  Q  F  E  V  L  G  E  L  E  S  V  P  Q  Q  P  F  W  P  H  S  *  R  I  *  *  F  D  W  F  A  G  C  C  I  V  I  Q  R  V  G  R  A  N  P  *  *  *  C  F  Y  E  C  L  I  R  R  *  *  R  S  L  W  Q  C  D  W  I  P  T  L  R  K  A  I  F  Y  G  E  E  A  L  N  G  E  G  T  *  T  H  P  H  H  C  T  S  Y  S  G  S  I  S  A  A  L  C  F  R  W  F  S  L  Y  V  *  P  K  K  K  S  W  R  R  *  K  T  G  F  H  *  Q  R  *  W  S  A  F  N  I  L  I  T  W  K  F  I  I  L  G  Y  L  N  S  H  R  G  V  *  C  N  I  L   </first_frame>
            <second_frame>  L  S  N  C  S  S  F  K  R  V  R  F  N  N  N  S  F  T  G  N  L  S  E  A  F  G  I  H  P  E  L  K  F  I  D  L  S  D  N  D  F  H  G  E  L  S  S  N  W  G  K  Y  K  N  L  T  T  F  W  I  A  R  N  N  I  S  G  S  I  P  P  E  I  G  N  I  K  G  L  L  G  L  D  L  S  A  N  H  L  V  G  Q  I  P  E  E  F  G  K  L  T  S  L  V  E  L  S  L  K  N  N  Q  I  S  G  N  I  P  Q  E  L  G  S  L  T  N  L  D  S  L  D  L  S  D  N  R  L  N  G  S  I  P  T  F  L  G  D  Y  Q  H  L  F  H  L  N  L  S  C  N  K  F  G  Q  K  I  P  K  E  I  G  V  *  L  I  L  M  Y  L  I  *  A  I  I  F  W  L  E  K  Y  P  Q  L  T  N  L  K  Y  L  V  N  L  N  L  S  H  N  S  L  S  G  H  I  P  E  E  F  D  S  L  T  G  L  Q  D  V  V  L  S  Y  N  E  L  E  G  P  I  P  N  N  N  A  F  M  N  A  S  L  E  G  N  K  G  L  C  G  N  V  T  G  F  Q  P  C  E  R  P  S  S  M  V  K  K  H  S  M  A  K  G  H  K  L  I  L  I  T  V  L  P  I  L  G  A  L  V  L  L  C  A  F  A  G  S  L  F  M  C  D  Q  R  R  R  V  G  D  V  E  R  R  D  S  I  D  K  D  D  G  L  L  S  I  S  S  L  H  G  N  S  L  Y  W  D  I  L  I  A  T  E  E  F  D  A  T  F  C  </second_frame>
            <third_frame>   *  A  T  A  P  V  S  K  G  F  A  S  I  T  T  A  L  L  G  I  Y  L  K  L  L  A  S  I  P  S  *  S  S  L  I  *  A  T  M  I  F  M  A  N  S  A  A  T  G  G  N  T  R  I  *  L  L  F  G  *  P  E  I  T  L  A  V  A  Y  H  Q  R  L  E  T  S  K  V  F  W  D  L  I  F  Q  Q  I  I  W  L  G  K  Y  Q  R  N  L  E  N  *  P  L  W  L  S  S  H  *  K  T  T  K  F  L  A  I  Y  L  R  N  L  G  H  *  Q  I  *  T  P  L  I  Y  Q  T  I  D  *  M  G  R  S  Q  R  F  *  E  I  T  N  T  C  F  T  *  T  S  V  V  T  S  L  A  R  K  F  Q  R  R  *  G  Y  N  S  S  *  C  T  *  F  E  P  *  S  S  G  W  R  N  T  P  S  *  P  I  *  S  T  W  *  T  *  I  C  P  T  T  A  F  L  A  T  F  L  K  N  L  I  V  *  L  V  C  R  M  L  Y  C  H  T  T  S  W  K  G  Q  S  L  I  I  M  L  L  *  M  P  H  *  K  V  I  K  V  F  V  A  M  *  L  D  S  N  L  A  K  G  H  L  L  W  *  R  S  T  Q  W  R  R  D  I  N  S  S  S  S  L  Y  F  L  F  W  E  H  *  C  C  F  V  L  S  L  V  L  S  L  C  V  T  K  E  E  E  L  E  T  L  K  D  G  I  P  L  T  K  M  M  V  C  F  Q  Y  P  H  Y  M  E  I  H  Y  T  G  I  S  *  *  P  Q  R  S  L  M  Q  H  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28616" stop="29137"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIFWLEKYPQLTNLKYLVNLNLSHNSLSGHIPEEFDSLTGLQDVVLSYNELEGPIPNNNAFMNASLEGNKGLCGNVTGFQPCERPSSMVKKHSMAKGHKLILITVLPILGALVLLCAFAGSLFMCDQRRRVGDVERRDSIDKDDGLLSISSLHGNSLYWDILIATEEFDATFC</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28076" stop="28591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNCSSFKRVRFNNNSFTGNLSEAFGIHPELKFIDLSDNDFHGELSSNWGKYKNLTTFWIARNNISGSIPPEIGNIKGLLGLDLSANHLVGQIPEEFGKLTSLVELSLKNNQISGNIPQELGSLTNLDSLDLSDNRLNGSIPTFLGDYQHLFHLNLSCNKFGQKIPKEIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32012" PGL_stop="31180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32012" e_stop="31180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="32012" e_stop="31180" e_length="833"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32012" stop="31235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31854" stop="31180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACTGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTCTAGCCAATGCACCATAGCGATGATAAAATAATGACTAAGAAAAATAATATATTTTTGATGAAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATATGAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCATTCTATAAGAGAATTGGTCCAGATGTGATAAAATCATTATATGTTGGATATATGCCACAACTCACCTCTATGGAAGGTTTGAGAAAAATGATA</gDNA_template>
            <first_frame> D  K  T  I  D  S  S  S  I  A  P  K  G  *  D  I  N  *  S  F  D  A  L  *  L  G  S  S  P  I  E  L  W  R  N  T  P  Y  M  G  K  T  L  S  S  S  Q  C  T  I  A  M  I  K  *  *  L  R  K  I  I  Y  F  *  *  N  I  L  K  F  I  R  L  N  L  L  H  S  F  K  R  M  W  *  Q  H  V  I  T  L  K  S  V  C  *  L  A  P  F  N  H  M  N  V  V  A  V  N  D  *  S  E  R  *  Q  I  I  N  Y  M  N  K  G  V  E  G  Q  N  Y  N  S  H  H  C  G  N  D  R  R  K  N  T  I  S  S  S  N  N  P  S  K  C  E  G  N  F  Y  Y  P  N  G  M  K  C  H  *  T  C  E  C  C  Q  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  R  *  S  N  G  T  L  D  L  S  K  *  C  *  G  V  L  W  K  Y  D  E  F  *  S  H  D  N  L  L  I  M  Q  I  Y  E  V  H  I  N  N  *  F  I  P  *  R  Q  C  D  L  *  *  V  S  *  I  L  D  H  S  I  R  E  L  V  Q  M  *  *  N  H  Y  M  L  D  I  C  H  N  S  P  L  W  K  V  *  E  K  *   </first_frame>
            <second_frame>  I  R  R  *  I  Q  V  L  S  H  Q  K  G  K  T  S  I  R  V  L  M  H  C  D  W  V  Q  V  P  *  N  Y  G  V  T  R  L  I  W  V  R  H  *  V  L  A  N  A  P  *  R  *  *  N  N  D  *  E  K  *  Y  I  F  D  E  I  S  *  N  S  S  D  *  I  C  S  I  P  L  K  E  C  G  S  N  M  *  *  L  *  N  P  S  V  D  L  L  H  S  I  I  *  M  W  *  Q  *  M  I  S  L  K  D  D  K  *  L  I  I  *  I  R  A  W  R  D  K  I  I  I  V  I  I  V  V  M  I  E  G  R  T  L  *  V  L  Q  I  I  L  Q  N  V  K  A  I  F  I  I  Q  M  V  *  N  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  Y  G  N  M  M  N  F  K  A  M  T  I  C  L  *  C  K  F  M  K  Y  I  *  I  I  S  S  F  L  E  D  N  V  T  C  D  E  Y  R  E  Y  S  T  I  L  *  E  N  W  S  R  C  D  K  I  I  I  C  W  I  Y  A  T  T  H  L  Y  G  R  F  E  K  N  D  </second_frame>
            <third_frame>   *  D  D  R  F  K  F  Y  R  T  K  R  V  R  H  Q  L  E  F  *  C  T  V  I  G  F  K  S  H  R  I  M  A  *  H  A  L  Y  G  *  D  I  E  F  *  P  M  H  H  S  D  D  K  I  M  T  K  K  N  N  I  F  L  M  K  Y  L  E  I  H  Q  I  E  F  A  P  F  L  *  K  N  V  V  A  T  C  D  N  S  E  I  R  L  L  T  C  S  I  Q  S  Y  E  C  G  S  S  E  *  L  V  *  K  M  T  N  N  *  L  Y  E  *  G  R  G  G  T  K  L  *  *  S  S  L  W  *  *  *  K  E  E  H  Y  K  F  F  K  *  S  F  K  M  *  R  Q  F  L  L  S  K  W  Y  E  M  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  P  *  Q  F  A  Y  N  A  N  L  *  S  T  Y  K  *  L  V  H  S  L  K  T  M  *  L  V  M  S  I  V  N  T  R  P  F  Y  K  R  I  G  P  D  V  I  K  S  L  Y  V  G  Y  M  P  Q  L  T  S  M  E  G  L  R  K  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37489" PGL_stop="38346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37489" e_stop="38193"/>
            <exon e_start="38295" e_stop="38346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.695" e_score="0.997"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="37489" e_stop="38193" e_length="705"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.695">
            <gDNA_intron_boundary i_start="38194" i_stop="38294" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="38295" e_stop="38346" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37489" stop="38193"/>
              <exon start="38295" stop="38346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGAGGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTG : AGCTTGCATATACAATGAAGGTTACACAAATGTGTGATGTGTATAGCTTTGG</gDNA_template>
            <first_frame> S  S  S  S  L  Y  F  L  F  W  E  H  *  C  C  F  V  L  S  L  V  L  S  L  C  V  T  K  E  E  E  L  E  T  L  K  E  G  M  V  M  V  G  F  R  Y  P  C  *  M  G  R  H  C  T  G  T  S  *  M  P  Q  K  S  S  M  Q  N  F  A  L  G  K  E  V  R  E  V  F  T  R  *  T  F  H  Y  *  E  I  *  L  *  R  D  F  I  L  H  F  R  I  H  I  P  K  A  S  *  M  K  *  G  H  *  L  G  L  S  T  G  T  L  *  A  S  T  A  I  V  R  K  H  N  T  H  S  W  F  T  S  M  W  R  G  G  V  C  L  V  F  *  A  M  K  L  S  L  R  N  W  I  G  L  K  G  *  I  S  S  R  V  L  L  L  L  Y  L  T  C  T  R  I  V  H  H  P  L  F  I  E  T  Y  V  A  V  M  F  C  L  I  L  S  M  K  L  V  L  Q  T  L  E  *  Q  R  F  S  I  Q  T  R  P  I  A  P  R  L  Q  A  H  M  V  M  S  H  L  :  S  L  H  I  Q  *  R  L  H  K  C  V  M  C  I  A  L  </first_frame>
            <second_frame>  H  P  H  H  C  T  S  Y  S  G  S  I  S  A  A  L  C  F  R  W  F  S  L  Y  V  *  P  K  K  K  S  W  R  R  *  K  K  G  W  *  W  L  A  F  D  I  H  V  R  W  E  G  I  V  Q  G  H  L  K  C  H  R  R  V  R  C  K  I  L  H  W  A  R  R  S  G  K  C  L  Q  G  K  P  S  I  I  R  R  Y  S  C  E  E  T  S  F  F  I  S  E  Y  T  S  Q  K  L  H  K  *  S  K  G  I  D  W  D  *  A  P  E  H  C  E  P  L  R  L  L  F  E  S  T  T  L  T  L  G  L  R  V  C  G  E  G  E  F  V  *  C  F  K  Q  *  S  *  V  *  E  I  G  L  A  *  K  G  E  Y  H  Q  G  C  C  F  C  F  I  L  H  A  P  G  L  F  T  T  H  C  S  S  R  H  T  *  Q  *  C  F  A  *  F  *  V  *  S  S  C  C  R  L  W  N  S  K  D  S  Q  S  R  L  V  Q  L  H  R  A  C  R  H  I  W  L  C  R  T  * :   A  C  I  Y  N  E  G  Y  T  N  V  *  C  V  *  L  W </second_frame>
            <third_frame>   I  L  I  T  V  L  P  I  L  G  A  L  V  L  L  C  A  F  A  G  S  L  F  M  C  D  Q  R  R  R  V  G  D  V  E  R  R  D  G  D  G  W  L  S  I  S  M  L  D  G  K  A  L  Y  R  D  I  L  N  A  T  E  E  F  D  A  K  F  C  I  G  Q  G  G  Q  G  S  V  Y  K  V  N  L  P  L  L  G  D  I  A  V  K  R  L  H  S  S  F  Q  N  T  H  P  K  S  F  I  N  E  V  R  A  L  T  G  I  K  H  R  N  I  V  S  L  Y  G  Y  C  S  K  A  Q  H  S  L  L  V  Y  E  Y  V  E  R  G  S  L  S  S  V  L  S  N  E  V  E  S  K  K  L  D  W  L  K  R  V  N  I  I  K  G  V  A  F  A  L  S  Y  M  H  Q  D  C  S  P  P  I  V  H  R  D  I  R  S  S  N  V  L  L  D  S  E  Y  E  A  R  V  A  D  F  G  I  A  K  I  L  N  P  D  S  S  N  C  T  A  L  A  G  T  Y  G  Y  V  A  P   : E  L  A  Y  T  M  K  V  T  Q  M  C  D  V  Y  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37491" stop="38193"/>
                    <exon start="38295" stop="38344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILITVLPILGALVLLCAFAGSLFMCDQRRRVGDVERRDGDGWLSISMLDGKALYRDILNATEEFDAKFCIGQGGQGSVYKVNLPLLGDIAVKRLHSSFQNTHPKSFINEVRALTGIKHRNIVSLYGYCSKAQHSLLVYEYVERGSLSSVLSNEVESKKLDWLKRVNIIKGVAFALSYMHQDCSPPIVHRDIRSSNVLLDSEYEARVADFGIAKILNPDSSNCTALAGTYGYVAPELAYTMKVTQMCDVYSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="43406" PGL_stop="44201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43406" e_stop="44201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="43406" e_stop="44201" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43406" stop="44201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTGTTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCATCTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGCGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCA</gDNA_template>
            <first_frame> I  F  *  L  L  A  N  D  D  S  S  H  N  F  *  F  P  S  V  C  Y  I  L  I  S  F  R  G  Y  I  C  Y  H  *  G  S  N  C  S  S  K  M  E  S  I  F  P  K  P  E  Q  F  F  I  G  F  V  D  A  K  W  T  C  W  Y  Q  *  H  W  S  G  E  F  *  C  M  R  G  L  V  W  S  Y  M  F  *  R  *  G  I  H  V  E  Y  D  K  C  W  Y  Q  W  H  T  V  *  F  S  I  F  I  T  P  F  S  W  L  S  *  S  *  H  Q  Q  L  L  W  H  Y  P  T  *  N  R  K  A  H  *  S  W  L  S  *  L  V  L  Q  S  D  F  G  H  N  P  T  T  N  R  L  I  N  K  A  *  D  P  P  H  L  *  Q  P  I  I  W  F  H  S  G  G  N  R  S  P  K  V  F  D  *  A  S  F  E  F  *  L  S  *  W  F  N  S  C  F  I  G  D  F  G  Q  I  V  L  F  A  S  V  *  E  P  S  F  W  F  H  S  S  R  N  R  E  T  C  Q  S  P  S  T  F  S  *  F  K  Q  V  N  W  S  Y  S  S  R  N  W  K  T  C  Q  S  P  S  T  F  S  *  F  </first_frame>
            <second_frame>  S  F  N  Y  *  Q  M  M  I  V  P  T  I  F  N  F  L  Q  C  V  T  F  L  Y  L  F  A  V  T  F  A  T  T  E  E  A  T  A  L  L  K  W  K  A  S  F  Q  N  Q  N  N  S  L  L  A  S  W  T  L  S  G  P  A  G  T  N  S  I  G  A  A  S  S  N  A  C  E  D  W  Y  G  V  T  C  S  N  G  R  V  Y  M  L  N  M  T  N  A  G  I  N  G  T  L  Y  D  F  P  F  S  S  L  P  F  L  G  Y  L  D  L  S  I  N  N  F  S  G  T  I  P  P  E  I  G  K  L  T  N  L  G  Y  L  D  L  S  F  N  Q  I  S  G  I  I  P  P  Q  I  G  S  L  T  K  L  E  T  L  H  I  F  N  S  Q  L  Y  G  S  I  P  E  E  I  G  H  L  R  S  L  T  E  L  A  L  N  S  N  S  L  S  G  S  I  P  A  S  L  G  T  L  D  K  L  S  Y  L  H  L  Y  E  N  H  L  S  G  S  I  P  A  E  I  G  K  L  V  N  L  L  Q  L  F  L  D  S  N  K  L  T  G  H  I  P  P  E  I  G  K  L  V  N  L  L  Q  L  F  L  D  S </second_frame>
            <third_frame>   L  L  I  I  S  K  *  *  *  F  P  Q  F  L  I  S  F  S  V  L  H  S  Y  I  F  S  R  L  H  L  L  P  L  R  K  Q  L  L  F  *  N  G  K  H  L  S  K  T  R  T  I  L  Y  W  L  R  G  R  *  V  D  L  L  V  P  I  A  L  E  R  R  V  L  M  H  A  R  T  G  M  E  L  H  V  L  T  V  G  Y  T  C  *  I  *  Q  M  L  V  S  M  A  H  C  M  I  F  H  F  H  H  S  L  F  L  V  I  L  I  L  A  S  T  T  S  L  A  L  S  H  L  K  *  E  S  S  L  I  L  A  I  L  T  C  P  S  I  R  F  R  A  *  S  H  H  K  S  A  H  *  Q  S  L  R  P  S  T  S  L  T  A  N  Y  M  V  P  F  R  R  K  *  V  T  *  G  L  *  L  S  *  L  *  I  L  T  L  L  V  V  Q  F  L  L  H  W  G  L  W  T  N  C  L  I  C  I  C  M  R  T  I  F  L  V  P  F  Q  Q  K  *  G  N  L  S  I  S  F  N  F  F  L  I  Q  T  S  *  L  V  I  F  L  Q  K  L  E  N  L  S  I  S  F  N  F  F  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43422" stop="44201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMMIVPTIFNFLQCVTFLYLFAVTFATTEEATALLKWKASFQNQNNSLLASWTLSGPAGTNSIGAASSNACEDWYGVTCSNGRVYMLNMTNAGINGTLYDFPFSSLPFLGYLDLSINNFSGTIPPEIGKLTNLGYLDLSFNQISGIIPPQIGSLTKLETLHIFNSQLYGSIPEEIGHLRSLTELALNSNSLSGSIPASLGTLDKLSYLHLYENHLSGSIPAEIGKLVNLLQLFLDSNKLTGHIPPEIGKLVNLLQLFLDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="44445" PGL_stop="45729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44445" e_stop="44451"/>
            <exon e_start="45021" e_stop="45729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.672" acc_prob="0.289" e_score="0.571"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="44445" e_stop="44451" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.672" acc_prob="0.289">
            <gDNA_intron_boundary i_start="44452" i_stop="45020" i_length="569"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="45021" e_stop="45729" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44445" stop="44451"/>
              <exon start="45021" stop="45729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTG : GAACTTGGGTCACTGACAAATTTAGACTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAGATAGGGGGTATAACTCATCTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAATCCCCCCCCAGTTAACCAATTTGAAGTACTTGGTGAACTTGAATCTGTCCCACAACAGCCTTTCTGGCCACATTCCTGAAGAATTTGATAGTTTGACTGGTTTGCAGTATGTTGTATTGTCATACAACGAGTTGGAAGGGCCAATCCCTAATAATAATGCTTTTATGAATGCCTCATTAGAAGGTAATAAAGGTCTTTGTGGCAATGTGACTGGATTCCAACCTTGCGAAAGGCCATCTTCTATGGTGAAGAAGCACTCAATGGCGAAGGGACATAAACTCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGACGGGATTCCATTGGCAAAGATGATGGTCTGCTTTCAATATCCTCATTACATGGAAGTTCATTATACTGGGATATCTTAAAAGCCACAGAGGAGTTTGATGCAACATTTTGCG</gDNA_template>
            <first_frame> S  F   : G  T  W  V  T  D  K  F  R  L  P  *  S  I  R  Q  *  I  E  W  V  D  P  N  V  F  R  R  L  P  T  P  V  S  L  E  P  Q  L  *  Q  V  W  P  E  N  S  K  G  D  R  G  Y  N  S  S  *  C  T  *  F  E  P  *  S  S  G  W  R  N  P  P  P  V  N  Q  F  E  V  L  G  E  L  E  S  V  P  Q  Q  P  F  W  P  H  S  *  R  I  *  *  F  D  W  F  A  V  C  C  I  V  I  Q  R  V  G  R  A  N  P  *  *  *  C  F  Y  E  C  L  I  R  R  *  *  R  S  L  W  Q  C  D  W  I  P  T  L  R  K  A  I  F  Y  G  E  E  A  L  N  G  E  G  T  *  T  H  P  H  H  C  T  S  Y  S  G  S  I  S  A  A  L  C  F  R  W  F  S  L  Y  V  *  P  K  K  K  S  W  R  R  *  K  T  G  F  H  W  Q  R  *  W  S  A  F  N  I  L  I  T  W  K  F  I  I  L  G  Y  L  K  S  H  R  G  V  *  C  N  I  L   </first_frame>
            <second_frame>  L  L  :  E  L  G  S  L  T  N  L  D  S  L  D  L  S  D  N  R  L  N  G  S  I  P  T  F  L  G  D  Y  Q  H  L  F  H  L  N  L  S  C  N  K  F  G  Q  K  I  P  K  E  I  G  G  I  T  H  L  N  V  L  D  L  S  H  N  L  L  V  G  E  I  P  P  Q  L  T  N  L  K  Y  L  V  N  L  N  L  S  H  N  S  L  S  G  H  I  P  E  E  F  D  S  L  T  G  L  Q  Y  V  V  L  S  Y  N  E  L  E  G  P  I  P  N  N  N  A  F  M  N  A  S  L  E  G  N  K  G  L  C  G  N  V  T  G  F  Q  P  C  E  R  P  S  S  M  V  K  K  H  S  M  A  K  G  H  K  L  I  L  I  T  V  L  P  I  L  G  A  L  V  L  L  C  A  F  A  G  S  L  F  M  C  D  Q  R  R  R  V  G  D  V  E  R  R  D  S  I  G  K  D  D  G  L  L  S  I  S  S  L  H  G  S  S  L  Y  W  D  I  L  K  A  T  E  E  F  D  A  T  F  C  </second_frame>
            <third_frame>   F  W :   N  L  G  H  *  Q  I  *  T  P  L  I  Y  Q  T  I  D  *  M  G  R  S  Q  R  F  *  E  I  T  N  T  C  F  T  *  T  S  V  V  T  S  L  A  R  K  F  Q  R  R  *  G  V  *  L  I  L  M  Y  L  I  *  A  I  I  F  W  L  E  K  S  P  P  S  *  P  I  *  S  T  W  *  T  *  I  C  P  T  T  A  F  L  A  T  F  L  K  N  L  I  V  *  L  V  C  S  M  L  Y  C  H  T  T  S  W  K  G  Q  S  L  I  I  M  L  L  *  M  P  H  *  K  V  I  K  V  F  V  A  M  *  L  D  S  N  L  A  K  G  H  L  L  W  *  R  S  T  Q  W  R  R  D  I  N  S  S  S  S  L  Y  F  L  F  W  E  H  *  C  C  F  V  L  S  L  V  L  S  L  C  V  T  K  E  E  E  L  E  T  L  K  D  G  I  P  L  A  K  M  M  V  C  F  Q  Y  P  H  Y  M  E  V  H  Y  T  G  I  S  *  K  P  Q  R  S  L  M  Q  H  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44446" stop="44451"/>
                    <exon start="45021" stop="45728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLELGSLTNLDSLDLSDNRLNGSIPTFLGDYQHLFHLNLSCNKFGQKIPKEIGGITHLNVLDLSHNLLVGEIPPQLTNLKYLVNLNLSHNSLSGHIPEEFDSLTGLQYVVLSYNELEGPIPNNNAFMNASLEGNKGLCGNVTGFQPCERPSSMVKKHSMAKGHKLILITVLPILGALVLLCAFAGSLFMCDQRRRVGDVERRDSIGKDDGLLSISSLHGSSLYWDILKATEEFDATFC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45996" PGL_stop="46914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45996" e_stop="46224"/>
            <exon e_start="46323" e_stop="46914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="0.939"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="45996" e_stop="46224" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="46225" i_stop="46322" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="46323" e_stop="46914" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45996" stop="46224"/>
              <exon start="46323" stop="46914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434259" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGATTGGCTTACAAGGGTGAATATCATCAAAGGTGTTGCTTATGCTTTATCTTACATGCACCATGATTGCTCACCACCAATTGTTCATCGGGACATGTCAAGCAGTAATGTTTTGCTCGACTCCGAGTTTGAAGCTTGTGTTTCAGATTTTGGCATAGCTAAGATTCTCAAGCCAGACTCATCCAATTGTACTGCACTTGCAGGCACATATGGCTATGTAGCACCAG : AGCTTGCCTACACATTGAAGGTGACGGAGATGTGTGACGTCTACAGCTTTGGAGTATTAGCATTGGAGGTAATCAAAGGAAAGCATCTTGGGGAATACCTTGCTCTTCTAGCAAATCCATCAACAAGAGATGTGCAGCTAAGCGATTTGCTAGATGAACGCCTTCCACATCCTGAGGATGAAGTAAAAGAGTTTTTGGTTTTCATCGTCAAGCTAGCAATCTCGTGTTTGGTTGAAAATCCAAAATCAAGGCCAACAATGCACTTCATTTCTCATATGTTATCAATGGATCCACCCAATCATCAGATTCCATGAAAGTGAGATTCCTCGAGATGTAAGGTGCCCTTGTATGGAAAAGGTTATGCTCGGCACCAAGTGGTTATGAAGTAGTAACAAGTTTGTTGATCAGAACTTCCATAGCAAAACATTATTAAGACTTGCTTTTTGTATTGTTGAGTTGCTTATATAGATTACTTATTTTAACCTGAAAGATTCAGAGCCTCCGTACTAGAATATATACAAATTATAGTATACTATGTACTGATGTTAAGTAATAAAAGCAAGTTCCATGTTTTATGAGTACTACTGATGTT</gDNA_template>
            <first_frame> L  D  W  L  T  R  V  N  I  I  K  G  V  A  Y  A  L  S  Y  M  H  H  D  C  S  P  P  I  V  H  R  D  M  S  S  S  N  V  L  L  D  S  E  F  E  A  C  V  S  D  F  G  I  A  K  I  L  K  P  D  S  S  N  C  T  A  L  A  G  T  Y  G  Y  V  A  P   : E  L  A  Y  T  L  K  V  T  E  M  C  D  V  Y  S  F  G  V  L  A  L  E  V  I  K  G  K  H  L  G  E  Y  L  A  L  L  A  N  P  S  T  R  D  V  Q  L  S  D  L  L  D  E  R  L  P  H  P  E  D  E  V  K  E  F  L  V  F  I  V  K  L  A  I  S  C  L  V  E  N  P  K  S  R  P  T  M  H  F  I  S  H  M  L  S  M  D  P  P  N  H  Q  I  P  *  K  *  D  S  S  R  C  K  V  P  L  Y  G  K  G  Y  A  R  H  Q  V  V  M  K  *  *  Q  V  C  *  S  E  L  P  *  Q  N  I  I  K  T  C  F  L  Y  C  *  V  A  Y  I  D  Y  L  F  *  P  E  R  F  R  A  S  V  L  E  Y  I  Q  I  I  V  Y  Y  V  L  M  L  S  N  K  S  K  F  H  V  L  *  V  L  L  M   </first_frame>
            <second_frame>  W  I  G  L  Q  G  *  I  S  S  K  V  L  L  M  L  Y  L  T  C  T  M  I  A  H  H  Q  L  F  I  G  T  C  Q  A  V  M  F  C  S  T  P  S  L  K  L  V  F  Q  I  L  A  *  L  R  F  S  S  Q  T  H  P  I  V  L  H  L  Q  A  H  M  A  M  *  H  Q  :  S  L  P  T  H  *  R  *  R  R  C  V  T  S  T  A  L  E  Y  *  H  W  R  *  S  K  E  S  I  L  G  N  T  L  L  F  *  Q  I  H  Q  Q  E  M  C  S  *  A  I  C  *  M  N  A  F  H  I  L  R  M  K  *  K  S  F  W  F  S  S  S  S  *  Q  S  R  V  W  L  K  I  Q  N  Q  G  Q  Q  C  T  S  F  L  I  C  Y  Q  W  I  H  P  I  I  R  F  H  E  S  E  I  P  R  D  V  R  C  P  C  M  E  K  V  M  L  G  T  K  W  L  *  S  S  N  K  F  V  D  Q  N  F  H  S  K  T  L  L  R  L  A  F  C  I  V  E  L  L  I  *  I  T  Y  F  N  L  K  D  S  E  P  P  Y  *  N  I  Y  K  L  *  Y  T  M  Y  *  C  *  V  I  K  A  S  S  M  F  Y  E  Y  Y  *  C  </second_frame>
            <third_frame>   G  L  A  Y  K  G  E  Y  H  Q  R  C  C  L  C  F  I  L  H  A  P  *  L  L  T  T  N  C  S  S  G  H  V  K  Q  *  C  F  A  R  L  R  V  *  S  L  C  F  R  F  W  H  S  *  D  S  Q  A  R  L  I  Q  L  Y  C  T  C  R  H  I  W  L  C  S  T  R :   A  C  L  H  I  E  G  D  G  D  V  *  R  L  Q  L  W  S  I  S  I  G  G  N  Q  R  K  A  S  W  G  I  P  C  S  S  S  K  S  I  N  K  R  C  A  A  K  R  F  A  R  *  T  P  S  T  S  *  G  *  S  K  R  V  F  G  F  H  R  Q  A  S  N  L  V  F  G  *  K  S  K  I  K  A  N  N  A  L  H  F  S  Y  V  I  N  G  S  T  Q  S  S  D  S  M  K  V  R  F  L  E  M  *  G  A  L  V  W  K  R  L  C  S  A  P  S  G  Y  E  V  V  T  S  L  L  I  R  T  S  I  A  K  H  Y  *  D  L  L  F  V  L  L  S  C  L  Y  R  L  L  I  L  T  *  K  I  Q  S  L  R  T  R  I  Y  T  N  Y  S  I  L  C  T  D  V  K  *  *  K  Q  V  P  C  F  M  S  T  T  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45996" stop="46224"/>
                    <exon start="46323" stop="46636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDWLTRVNIIKGVAYALSYMHHDCSPPIVHRDMSSSNVLLDSEFEACVSDFGIAKILKPDSSNCTALAGTYGYVAPELAYTLKVTEMCDVYSFGVLALEVIKGKHLGEYLALLANPSTRDVQLSDLLDERLPHPEDEVKEFLVFIVKLAISCLVENPKSRPTMHFISHMLSMDPPNHQIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="52052" PGL_stop="54409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52052" e_stop="52284"/>
            <exon e_start="52486" e_stop="52631"/>
            <exon e_start="53014" e_stop="53232"/>
            <exon e_start="53578" e_stop="53790"/>
            <exon e_start="53901" e_stop="54409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.897"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="52052" e_stop="52284" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52486" e_stop="52631" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53014" e_stop="53232" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53578" e_stop="53790" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="53901" e_stop="54409" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52052" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52061" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52107" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52112" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="53908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52115" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52115" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52117" stop="52284"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="54117" stop="54373"/>
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            <referenceDNA id="SGN-E589524" strand="-"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E624040" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGTAAAGAGGGCCCTATTGTAGATCAAAAGTGATCTTTGTGCGTCTTTAAAAAGGGAAGAAGGAATGTGTAAAAAATTGACTCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG : GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG : AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG : CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG : CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATCTTCAACTACGC</gDNA_template>
            <first_frame> H  V  K  R  A  L  L  *  I  K  S  D  L  C  A  S  L  K  R  E  E  G  M  C  K  K  L  T  P  Y  S  S  P  C  I  F  E  S  *  Q  S  Y  P  P  P  A  H  T  E  K  K  K  N  G  K  S  Y  S  S  G  R  S  S  F  S  R  *  R  L  *  T  T  P  I  C  L  Q  R :   M  G  N  E  *  E  V  D  Y  I  N  F  G  S  *  K  C  G  S  T  Q  I  D  S  T  D  L  C  *  D  F  W  G  R  S  A  *  R  V  G  Q  R  T  Y  S  *  F  *   : E  I  G  G  S  M  D  T  G  S  C  R  T  *  C  L  F  G  *  G  S  Y  *  E  M  D  K  K  Q  L  C  S  C  G  D  S  L  Y  Q  I  S  *  R  T  G  F  G  K  R  S  L  S  C  S  *  Q  E  I  S  R  R  G  R  C  L  S  H  Y  W  G  S  P  Q   : A  F  G  T  S  C  E  L  L  P  I  W  G  R  *  G  G  L  A  T  C  *  S  R  I  *  S  A  A  *  E  D  L  R  *  G  L  Q  *  R  *  G  H  *  N  F  S  H  K  E  Q  S  A  T  Q  C  Y  F  E  S  L  Q  R  *  I  W  *  G  Y  P  K   : A  I  R  R  *  G  *  V  C  C  T  V  K  G  H  H  K  R  S  C  L  P  R  A  L  F  R  G  G  S  S  *  C  N  *  Q  E  R  N  R  G  R  S  S  N  P  S  Y  R  Y  K  G  *  G  R  S  E  D  Y  R  *  R  V  P  E  E  G  *  R  S  S  G  S  R  H  C  Q  R  Y  R  R  R  L  *  E  Y  A  G  G  F  T  W  T  R  G  G  I  R  S  G  L  A  H  F  C  F  I  M  T  R  I  N  M  P  F  S  H  I  F  Q  S  W  H  V  F  D  D  *  V  W  S  V  S  H  E  L  L  V  L  F  F  L  *  E  T  L  N  M  N  L  C  A  V  *  K  C  S  L  M  I  C  I  H  Y  N  N  L  Q  L  R </first_frame>
            <second_frame>  T  *  R  G  P  Y  C  R  S  K  V  I  F  V  R  L  *  K  G  K  K  E  C  V  K  N  *  L  P  T  H  H  P  A  F  S  S  L  D  N  H  I  L  L  L  P  T  Q  R  R  R  K  M  A  S  L  T  V  P  A  E  V  P  S  V  A  E  D  C  E  Q  L  R  S  A  F  K   : G  W  G  T  N  E  K  L  I  I  S  I  L  A  H  R  N  A  A  Q  R  K  L  I  R  Q  T  Y  A  E  T  F  G  E  D  L  L  K  E  L  D  R  E  L  T  H  D  F  E  :  K  L  V  V  V  W  T  L  D  P  A  E  R  D  A  Y  L  A  K  E  A  T  K  R  W  T  K  S  N  F  V  L  V  E  I  A  C  T  R  S  P  K  E  L  V  L  A  R  E  A  Y  H  A  R  N  K  K  S  L  E  E  D  V  A  Y  H  T  T  G  D  H  R  K  :  L  L  V  P  L  V  S  S  Y  R  Y  G  G  D  E  V  D  L  R  L  A  K  A  E  S  K  V  L  H  E  K  I  S  D  K  A  Y  S  D  D  E  V  I  R  I  L  A  T  R  S  K  A  Q  L  N  A  T  L  N  H  Y  K  D  E  Y  G  E  D  I  L  K  :  Q  L  E  D  E  D  E  F  V  A  L  L  R  A  T  I  K  G  L  V  Y  P  E  H  Y  F  V  E  V  L  R  D  A  I  N  R  R  G  T  E  E  D  H  L  T  R  V  I  A  T  R  A  E  V  D  L  K  T  I  A  N  E  Y  Q  K  R  D  S  V  P  L  G  R  A  I  A  K  D  T  G  G  D  Y  E  N  M  L  V  A  L  L  G  Q  E  E  E  *  E  A  D  W  L  T  S  V  L  *  *  P  E  *  I  C  H  S  P  I  Y  F  R  V  G  M  C  L  M  I  E  C  G  L  F  H  M  S  F  *  S  F  S  S  C  E  K  L  *  I  *  I  F  V  L  S  K  N  V  L  *  *  F  A  S  T  T  I  I  F  N  Y   </second_frame>
            <third_frame>   R  K  E  G  P  I  V  D  Q  K  *  S  L  C  V  F  K  K  G  R  R  N  V  *  K  I  D  S  L  L  I  T  L  H  F  R  V  L  T  I  I  S  S  S  C  P  H  R  E  E  E  K  W  Q  V  L  Q  F  R  Q  K  F  L  Q  S  L  K  T  V  N  N  S  D  L  P  S  K  :  D  G  E  R  M  R  S  *  L  Y  Q  F  W  L  I  E  M  R  L  N  A  N  *  F  D  R  L  M  L  R  L  L  G  K  I  C  L  K  S  W  T  E  N  L  L  M  I  L  R :   N  W  W  *  Y  G  H  W  I  L  Q  N  V  M  P  I  W  L  R  K  L  L  R  D  G  Q  K  A  T  L  F  L  W  R  *  L  V  P  D  L  L  K  N  W  F  W  Q  E  K  L  I  M  L  V  T  R  N  L  S  K  R  T  L  L  I  T  L  L  G  I  T  A  S :   F  W  Y  L  L  *  A  P  T  D  M  G  E  M  R  W  T  C  D  L  L  K  Q  N  L  K  C  C  M  R  R  S  P  I  R  L  T  V  T  M  R  S  L  E  F  *  P  Q  G  A  K  R  N  S  M  L  L  *  I  I  T  K  M  N  M  V  R  I  S  *  S :   N  *  K  M  R  M  S  L  L  H  C  *  G  P  P  *  K  V  L  S  T  P  S  T  I  S  W  R  F  F  V  M  Q  L  T  G  E  E  Q  R  K  I  I  *  P  E  L  S  L  Q  G  L  R  S  I  *  R  L  S  L  T  S  T  R  R  G  I  A  F  L  W  V  A  P  L  P  K  I  Q  E  E  I  M  R  I  C  W  W  L  Y  L  D  K  R  R  N  K  K  R  I  G  S  L  L  F  Y  N  D  Q  N  K  Y  A  I  L  P  Y  I  S  E  L  A  C  V  *  *  L  S  V  V  C  F  T  *  A  F  S  P  F  L  L  V  R  N  F  E  Y  E  S  L  C  C  L  K  M  F  S  N  D  L  H  P  L  Q  *  S  S  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52134" stop="52284"/>
                    <exon start="52486" stop="52631"/>
                    <exon start="53014" stop="53232"/>
                    <exon start="53578" stop="53790"/>
                    <exon start="53901" stop="54191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPTHHPAFSSLDNHILLLPTQRRRKMASLTVPAEVPSVAEDCEQLRSAFKGWGTNEKLIISILAHRNAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVVVWTLDPAERDAYLAKEATKRWTKSNFVLVEIACTRSPKELVLAREAYHARNKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGDEVDLRLAKAESKVLHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEYGEDILKQLEDEDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKTIANEYQKRDSVPLGRAIAKDTGGDYENMLVALLGQEEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="54387" PGL_stop="53957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54387" e_stop="53957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="54387" e_stop="53957" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54387" stop="54098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54372" stop="53957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54370" stop="54111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATGCAAATCATTAGAGAACATTTTTAGACAGCACAAAGATTCATATTCAAAGTTTCTCACAAGAAGAAAAGGACTAAAAGCTCATGTGAAACAGACCACACTCAATCATCAAACACATGCCAACTCTGAAATATATGGGAGAATGGCATATTTATTCTGGTCATTATAAAACAGAAGTGAGCCAATCCGCTTCTTATTCCTCCTCTTGTCCAAGTAAAGCCACCAGCATATTCTCATAATCTCCTCCTGTATCTTTGGCAATGGCGCGACCCAGAGGAACGCTATCCCTCTTCTGGTACTCGTTAGCGATAGTCTTCAGATCGACCTCAGCCCTTGTAGCGATAACTCGGGTTAGATGATCTTCCTCTGTTCCTCTCCTGTTAATTGCATCACGAAGAACCTCCACGAAATAGTGCTCGGGGTAGACA</gDNA_template>
            <first_frame> W  M  Q  I  I  R  E  H  F  *  T  A  Q  R  F  I  F  K  V  S  H  K  K  K  R  T  K  S  S  C  E  T  D  H  T  Q  S  S  N  T  C  Q  L  *  N  I  W  E  N  G  I  F  I  L  V  I  I  K  Q  K  *  A  N  P  L  L  I  P  P  L  V  Q  V  K  P  P  A  Y  S  H  N  L  L  L  Y  L  W  Q  W  R  D  P  E  E  R  Y  P  S  S  G  T  R  *  R  *  S  S  D  R  P  Q  P  L  *  R  *  L  G  L  D  D  L  P  L  F  L  S  C  *  L  H  H  E  E  P  P  R  N  S  A  R  G  R   </first_frame>
            <second_frame>  G  C  K  S  L  E  N  I  F  R  Q  H  K  D  S  Y  S  K  F  L  T  R  R  K  G  L  K  A  H  V  K  Q  T  T  L  N  H  Q  T  H  A  N  S  E  I  Y  G  R  M  A  Y  L  F  W  S  L  *  N  R  S  E  P  I  R  F  L  F  L  L  L  S  K  *  S  H  Q  H  I  L  I  I  S  S  C  I  F  G  N  G  A  T  Q  R  N  A  I  P  L  L  V  L  V  S  D  S  L  Q  I  D  L  S  P  C  S  D  N  S  G  *  M  I  F  L  C  S  S  P  V  N  C  I  T  K  N  L  H  E  I  V  L  G  V  D  </second_frame>
            <third_frame>   D  A  N  H  *  R  T  F  L  D  S  T  K  I  H  I  Q  S  F  S  Q  E  E  K  D  *  K  L  M  *  N  R  P  H  S  I  I  K  H  M  P  T  L  K  Y  M  G  E  W  H  I  Y  S  G  H  Y  K  T  E  V  S  Q  S  A  S  Y  S  S  S  C  P  S  K  A  T  S  I  F  S  *  S  P  P  V  S  L  A  M  A  R  P  R  G  T  L  S  L  F  W  Y  S  L  A  I  V  F  R  S  T  S  A  L  V  A  I  T  R  V  R  *  S  S  S  V  P  L  L  L  I  A  S  R  R  T  S  T  K  *  C  S  G  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 359 chains have been computed
$ 
$ memory statistics:
$ 737224 bytes spliced alignments in total
$ 289 spliced alignments have been stored
$ 2550 bytes was the average size of a spliced alignment
$ 25712 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 2142 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 391 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 22:59:28
-->
