<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-05 12:04:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7140-2" ref_strand="+" ref_description="SGN-M7140-2 C2_At2g01710-2 [cosii_markers]">
      <seq>aaaaagacaatctttttacactctacagttacaccccagtcccccccacccccacaaaatttctcttcctcttccccaaatcatccatcattttctccgtctccagttcagatcaaaaccccaaagccccaaaatccccaaaaatccaccaaaaaatggaacatcatacaactacaagcagagcagaagcagagagactgttaggagttgcagaaaagctcttaagagaaaaagaatttgccccttgtaaagattttgcccttcttgctcaagaaactgagcctttacttgaaggacctgaccagatcttagcaattgctgaagttcttttagcttctgtaaaacgaatcaacaatcaccatgattggtactctattcttcaaatccaaggccgtactgaagattcagagcttatcaagaaacagtatcgtcgtcttgctcttcttcttcatcctgataaaaacaaatacccatcttcagatactgcttttggccttgttgctgatgcctgggctgttctttcagatccatcaaaaaagggtctttatgataatgaactttccctttttactagagttaaattgactcctgctggtggacgaggaagacctagagggagttataataagcagaagaaaggagatgctaagttacccgtgaggaggagtagtcgggcgagtaattcgggttcgggtcaaaatcagaacccgaatcccagtccggtgagtcagaggagttatcatagcgtgccgccgaaggctacggcgccgacgccgatgagtggtgcgatgagagggcaaagggttgtgaatttgtggacggcgtgtccgtattgttacaatttgtatgagtatcctagggtttatgaagggtgttgtttaagatgtgataaatgtcaaagggcttttactgctactgagattttgtcaatgccaccaatggtgccagggagagaagcttatattgtattgggggtttttcccaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="68563" stop="66983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68211" g_stop="67283" g_length="929"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="989" r_length="927" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-M7140-2" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7140-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68211" e_stop="67283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCTCTTCCCCAAATCATCCATCAATTTCTCCGTCTCCATTTCAGATCAAACCCCCAAAGCCCTAAAATCCCCAAAAATTGAGGAAAAAATGGAGCATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTGTTAAGAGATAAAGAATTTGCCCCTTGTAAAGATTTTGCACTTCTTGCTCAAGAAACTGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTTAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGTCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTCGGCCTTGTTGCTGATGCTTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTGGTAGAGTTAAATTGACTCCTTCTGCTCGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCGAAGTTACCTGTGAGGAGGAGTAGTCGAGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCTAATCCCAGTCCGGTGAGTCAGAAGAGTTATCATAGTGCGCCGCCGAAGGCTACGGCGCCGGCGCCGATGAGTGGTGCGATGAGAGGGCAAAGGGTGGTGAATTTGTGGACGGCGTGTCCGTATTGTTACAATTTGTATGAGTATCCTAGGGTTTATGAAGGGTGTTGTTTACGATGTGATAAATGTAAAAGGGCTTTTACTGCTACTGAGATTTTGTCAATGCCACCAATGGTGCCAGGGAAAGAAGCTTATTATTGCATTTGGGGGTTTTTTCCAATGGG</genome_strand>
        <mrna_strand>CTCTTCCTCTTCCCCAAATCATCCATCATTTTCTCCGTCTCCAGTTCAGATCAAAACCCCAAAGCCCCAAAATCCCCAAAAATCCACCAAAAAATGGAACATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTCTTAAGAGAAAAAGAATTTGCCCCTTGTAAAGATTTTGCCCTTCTTGCTCAAGAAACTGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTAAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGCCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTTGGCCTTGTTGCTGATGCCTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTACTAGAGTTAAATTGACTCCTGCTGGTGGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCTAAGTTACCCGTGAGGAGGAGTAGTCGGGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCGAATCCCAGTCCGGTGAGTCAGAGGAGTTATCATAGCGTGCCGCCGAAGGCTACGGCGCCGACGCCGATGAGTGGTGCGATGAGAGGGCAAAGGGTTGTGAATTTGTGGACGGCGTGTCCGTATTGTTACAATTTGTATGAGTATCCTAGGGTTTATGAAGGGTGTTGTTTAAGATGTGATAAATGTCAAAGGGCTTTTACTGCTACTGAGATTTTGTCAATGCCACCAATGGTGCCAGGGAGAGAAGCTTA-TATTGTA-TTGGGGGTTTTTCCCAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7140" ref_strand="+" ref_description="SGN-M7140 C2_At2g01710 [cosii_markers]">
      <seq>aatctttttacactcgatagttacaccccactaccccccaccccaccccctcttcctcttccccaaatcaaccatcaatttctccgtctccatttcagatcaaacccccaaagccctaaaatccccaaaaattgaggaaaaaatggagcatcatacaactacaagcagagcagaagcagagagactgttaggagttgcagaaaagctgttaagagataaagaatttgccccttgtaaagattttgcacttcttgctcaagaaaccgagcctttacttgaaggacctgaccagatcttagcaattgctgaagttcttttagcttctgttaaacgaatcaacaatcaccatgattggtactctattcttcaaatccaaggtcgtactgaagattcagagcttatcaagaaacagtatcgtcgtcttgctcttcttcttcatcctgataaaaacaaatacccatcttcagatactgctttcggccttgttgctgatgcttgggctgttctttcagatccatcaaaaaagggtctttatgataatgaactttccctttttggtagagttaaattgactccttctgctcgacgaggaagacctagagggagttataataagcagaagaaaggagatgcgaagttacctgtgaggaggagtagtcgagcgagtaattcgggttcgggtcaaaatcagaaccctaatcccagtccggtgagtcagaagagttatcatagtgcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="68555" stop="67223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68255" g_stop="67523" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-M7140" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68255" e_stop="67523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTTTACACTCGACAGTTACACCCCACTACCCC-----CCACCCCCTCTTCCTCTTCCCCAAATCATCCATCAATTTCTCCGTCTCCATTTCAGATCAAACCCCCAAAGCCCTAAAATCCCCAAAAATTGAGGAAAAAATGGAGCATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTGTTAAGAGATAAAGAATTTGCCCCTTGTAAAGATTTTGCACTTCTTGCTCAAGAAACTGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTTAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGTCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTCGGCCTTGTTGCTGATGCTTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTGGTAGAGTTAAATTGACTCCTTCTGCTCGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCGAAGTTACCTGTGAGGAGGAGTAGTCGAGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCTAATCCCAGTCCGGTGAGTCAGAAGAGTTATCATAGTGCGCC</genome_strand>
        <mrna_strand>AATCTTTTTACACTCGATAGTTACACCCCACTACCCCCCACCCCACCCCCTCTTCCTCTTCCCCAAATCAACCATCAATTTCTCCGTCTCCATTTCAGATCAAACCCCCAAAGCCCTAAAATCCCCAAAAATTGAGGAAAAAATGGAGCATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTGTTAAGAGATAAAGAATTTGCCCCTTGTAAAGATTTTGCACTTCTTGCTCAAGAAACCGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTTAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGTCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTCGGCCTTGTTGCTGATGCTTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTGGTAGAGTTAAATTGACTCCTTCTGCTCGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCGAAGTTACCTGTGAGGAGGAGTAGTCGAGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCTAATCCCAGTCCGGTGAGTCAGAAGAGTTATCATAGTGCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1328" ref_strand="+" ref_description="SGN-M1328 P56 [est_clones]">
      <seq>tgaatagtacttattccatctccaaaattaggtcttacgtatttctatactcaattattggcccatttttgtataggttttctaactagatctaaagttttcctcttttattagggtttcttacaatttcttactatttatatcttttgtgagatttcttagaaagtttgaggaaagataattagcttcttcgacctgttaaggatggcaagggaaaagataaaaataaaaaagatagataatataacagcaagacaagtaacattttcaaagaggagaagagggctttttaagaaagctgaagagctttctgttctttgtgatgctgatgttgctcttatcattttttctgctactggaaagctatttgattttgccagcaccagcatgaaggatattcttggaaagtataaattgcaatcagctagccttgagaaagttgaccaaccttcccttgatttacagctagagaatagcctcaacatgagattaagcaagcaggtagctgataaaactcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="73355" stop="77655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73655" g_stop="73857" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73858" i_stop="73989" i_length="132">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73990" g_stop="74172" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="386" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74173" i_stop="76621" i_length="2449">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76622" g_stop="76700" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="465" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76701" i_stop="77300" i_length="600">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77301" g_stop="77355" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="520" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-M1328" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73655" e_stop="73857"/>
          <exon e_start="73990" e_stop="74172"/>
          <exon e_start="76622" e_stop="76700"/>
          <exon e_start="77301" e_stop="77355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATAGTACTTATTCCATCTCCAAAATTAGGTCTTACATATTTCTATACTCAATTATTGGCCCATTTTTGTATAGGTTTTCTAACTAGATCTAAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTATCTTCTTCGACCTGTTAAGGTAAGAATAAGATCTGTGTACATTCTACTGTCTTCAGATTCTACTTGTGAAATTATACTGTTACGATCGTAAATATAGTGTATTTTGGTGTTGATATAGATTGATTTTTTTTAATTTTTTTTTTTTTTGAAGGATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCTAGCACCAGGTAAAATCTCGAGATAAAATGAAGGATTATTTTATGCGACTTTTAAATTATTAATTCTTACGATTATTATCCTATCATCGTTAATATATACCAAACAGCTTATTTGGTCGGGGAATAAGTTATTACAGGATTGTTATTTTAAATAAAATTATAATTTCGAAATTTATTATCTCTTATAAAACTTTAGAAAATGAGATTAGCTATCCTGAGATATGTTTTTTTTCTCGATAATTAATGAATTTACATATAATCAAATATTTGGGTTGGTAGGATGTTTTAAAGGAGCTAGGGAGTGTAAGCTAAGGTGTTTTTTTTTTTGGTTGCTTAATTTATTTGTATTATTTAAAAAAAATTATTTATTAGAATAAGACGTAATTTTTTATTTTTATTTTTTTCGTCTAACAAAATAAATGTCATTTAGCAATAAAAAATATAATTAAAAAAGAATTGTCGTTTTAGGAATGTAAGACAATAATTAGTAATTATTTTTTTTTAAAAAAAACTATACCATTATATATTAAAGAACCACTAACTTGTTCTTAATACATCTAATTATTATAAAATAAATATATATATGGGTAACAATAAATAATATGTATTTATTGTTTTTCATAATGCACGTGAAAAAGATTAAAACAATAGATGTAGAGAGTACTCTTACCTTCAATATCCTATACGGTATATTTAAGATTACAAGACTCAATCAATATTCTGATACATTAAAAACGAATATTTAGGTTAAGATCACGTGATTTAAATTTAAACTTCCTTTCAAGTCAACAAATTGAAACGAAAGAGTATATTATATAAAAAAAAATTGTTGTGTATATATCCAACATAAGTTGAATTCCATTACTAATAAGATCATACATTGTCTATGCCTCGTTAATTAATTAGAGTATACACTTTACGATAATAACATCATGTTAATCGAGTTTTAAAATGATAGATATACAAATTTTGTATTTATTTATGTAAGATAGAAAAATTATTTTCGATCGGAATAAAGCTTTTGTCTGTTTTGTTGTGACAAGAGGAGCAAAGACAACAAACTGTAGTTTCATAGGGTTTCTTCAAACAAGAAAACCTCGTGTCTCACATTTAATTACCCCTTTTTGTTATTAATTTATGATTATTTATCCTAAAAAACAGTGAATTAACTAGAAACCATAGGTATTACTTCTGTTTTTATCATCTAGATACTTCTTTATTACATTAAATATATATTTTTCCGTTCATTTTTACTTATTTGATTTAGATTTTATACTTGAATATTTTATTATAATATTCATATTAATTGTTGTATAATATTAAAATTTTGAAATAAATGATTTGTTGAATCTGTCTGTCTAATTTTATGTGACAATGTTTAACTTGATCTAATGTTAAAAGAAAAGAAAATATTTTTTTTTTGAAATTTGTAATCTAAGACAATTGTTATATGTATTTGTGTAGTTATATATAATTTCATAAAACGGGAAATTTTAAAATTAAATTATATTTAATTATAGTAAAGTTATATATTCTTTTTTGGAAAAGTTAAAAATGAAAATATACCATAATGAGTGTATTTTCCCTTTTCGATAGTCAAATTAATTATCTTTAACTTTGAGCAACTATTAAAATTACAGATGAAGTGATTTTTTCTTTTTTTTTTTTTAAAAATAAAATAAAATAATTAATGGTCAATTTTTTTCAACAAAATTACCGATAGTGAATTTTGTAAATAATCAAGTGGTTAATTTACTCCAAAAACATTTAAATTTAGTGTCAGTAATCCCTGTTTAGTCAAATCATTCAATTTCATCAGTCATTTATTTACTGGATAAGATAAGATATGTCAATTACTATTTATTAGTACAAATATGTCTTTTGGAAAATGGGAGGGCCATAATTAAAGGAATATTTTGCAGCTACAATCATAATTTATTTCCCAATTAGGAACTAACTAATGATATGACAAATACTTAACCCGATCAGATATTTATATCAAATCAATTTATGCACTATAAATATATATATATATAGTAAGTAACAAAGTTTGTGATTAGAGTGATAATGTATTATATTTCTTCATTCTCAATTAAAAATTTCAAGTTCGAGATCACTTGTTACGAAGTTTACTTACCTCAAATTTTCCGATGTAAATTCGGACAATTCTTATCTGATAAGTTAGTTTTTTTTAAAAAAAAGTTGAGTTGGAATCAAATTCATTTTTTAAATCATGTCATCAAAACCAGACTTATCCAAATTTATAATTTATTTGACATATCAGACTCTTGTCTTAGATTGTGCACAATAATTATTTTCATTGTTTAATTTAGACAATTCTCACCTTATTCAGTATTAGCATTTGAGATCAAGTTAAATTCACGATTATTTATAATATATATTGATTAAGACTTGAATTAATTGACAAAATAATTAATTTTCTTGTTTATAAATGCAGCATGAAGGATATTCTTGGAAAGTATAAGTTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAGGTAGTAATTATATATACTTTATACTAAATTAATAAAGTAAAAAAATAAGAGCATTGTTTTATTATGCACAAAAATATATTTTATGAGTAACCTATGGTTTTAAATTAGTGAAGTTAATTATCATAATTAACTGATGTGAAAATATATATCTCTTGCTCCATCTCTCTCAAATTATTTATCGTGAAATAATTTCAAAATTATTTCTCAAATTAAAGTTTAAGACTTATTTTTTTTCATTTTAACGTAAATAGTATATATATGTATTTTTAAAGATTACAAATACTTTAATGATATATTGAATAAAAAGAGATTATGTATTAAGACATAAATAATAACATATTCGATACATATATACATGAAAAAGAAATAACGACATGCAAATTGAGACAGGAAAATATAAACTATAATCTAGTGACAGTGTATATGTAAATAAATATATATATTTTTGTTTTTGTTAGTTGCTCTAAATACTCTAACTTTGTTAAATTCTTACAAAATATCAAGTAGGCTATAATTACATCTACTTAATTAATTAAGCTACATATATATATTTTAATTTATTAACCTTTTTATTGCTTATAAATCATCATCATTTTGTAGCTAGAGAATAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTG</genome_strand>
        <mrna_strand>TGAATAGTACTTATTCCATCTCCAAAATTAGGTCTTACGTATTTCTATACTCAATTATTGGCCCATTTTTGTATAGGTTTTCTAACTAGATCTAAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTAGCTTCTTCGACCTGTTAAG....................................................................................................................................GATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCCAGCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGGATATTCTTGGAAAGTATAAATTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGAATAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1336" ref_strand="+" ref_description="SGN-M1336 P66 [est_clones]">
      <seq>ttgatccttttagcttgagttaatttagtatcttgttgatattgctttctttttatcgttctataagtcaatggtttatggaaacaattttttttttatttttgaagataaagataaggttcgtgtgcacttttatctttcttaaacatgacttgtgaaattataaatatatttattagtgtttgttaccatcaacctaatttaacttgttatataacatgtttattgatcttatattctatgttacaagttttactaattactataatcttttgtctatgttgtaacagtggtactactgcagttgaagatgattgctcaattacatctttaaagttagggctaccattcagctaacaaactcaaaggaggaagcttttgttgaagattgtactaataataatttttggatgataacaatcagtggcatatatatatatatttgccttcttttggaaaaaatatacattggaatataattgtcactgcttaattctactatggattatatgtaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="78716" stop="80125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79016" g_stop="79356" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79357" i_stop="79647" i_length="291">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79648" g_stop="79825" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="519" r_length="178" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-M1336" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79016" e_stop="79356"/>
          <exon e_start="79648" e_stop="79825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCCTTTTAGCTTGAGTTAATTTAGTATCTTGTTGATATTGCTTTCTTTTTATCGTTCTATAAGTCAATGGTTTATCGAAACAAATTTTTTTTTATTTTTGAAGATAAAGATAAGGTTCGTATGCACTTTTATCTTTCTTAAACATGACTTGTGAAATTATAAATATATTTATTAGTGTTTGTTACCATCAACCTAATTTAACTTGTTATATAACATGTTTATTGATCTTATATTCTATGTTACAAGTTTTACTAATTACTATAATCTTTTGTCTATGTTGTAACAGTGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGGGTAAGATTTGTTTATATTTTTCATAGAATCATGTATGTATGTATATATATATACACCCCTGCTTCGTTCGTCTCAATTTATACAATGTAGTTTGACTTAATTCTTACAAAGTTTAAATTTTTTTTTGAAACTTGTAGTATAAAATAAATCATATATATATATATATATATATATATATATATATATATTTGTGTGTCTGTGGATCGCTTCATTAGGATAAAATAAACATTTTAAAGTTAAATTGTTATTATATTTATTGGAAATTAATTAAATTTGCTATTTATTGATCAGGCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGT-ATGTA</genome_strand>
        <mrna_strand>TTGATCCTTTTAGCTTGAGTTAATTTAGTATCTTGTTGATATTGCTTTCTTTTTATCGTTCTATAAGTCAATGGTTTATGGAAACAATTTTTTTTTTATTTTTGAAGATAAAGATAAGGTTCGTGTGCACTTTTATCTTTCTTAAACATGACTTGTGAAATTATAAATATATTTATTAGTGTTTGTTACCATCAACCTAATTTAACTTGTTATATAACATGTTTATTGATCTTATATTCTATGTTACAAGTTTTACTAATTACTATAATCTTTTGTCTATGTTGTAACAGTGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGG...................................................................................................................................................................................................................................................................................................GCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATA-TACATTGGAATATAATTGTCACTGCTTAATTCTACTATGGATTATATGTAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3908" ref_strand="+" ref_description="SGN-M3908 C2_At5g10920 [cosii_markers]">
      <seq>cgtcaatggagtcactgttaatttcttcctcttcttctttgataacttcccccattttctcttcatccaaacacgcccttactcctaaaccccaaaacctctccttcaattccaatgctcgtttagtattgttcacctgtgcagcgcagcagatgaattcaccaccctctacggcggcgaaggaaaaggaggtgaagctatggggtggccgtttcgaagagagcgtcaccgatgctgtggagaagttcactgagtccatttcgtttgataaagctctctataaacaggatatcatgggtagtaaagctcatgcctcaatgctcgctaaacagggattgatgagtgatagtgatagagatactatcataaaaggtcttgacgagatacagaggcaaattgaggcaggtgaatttgtatggaggacagatagagaggatgtgcatatgaacattgaagcagcgcttactgatttggttggtgaacctgccaaaaagcttcacactgcgcggagtagaaatgatcaagttgcaactgactttcgcttgtggtgtcgtgatgctattgacggaatcatttcacgcattaagaatcttcagattgcaatggttgaactagctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-t9ArB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="113861" stop="112258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113561" g_stop="113224" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113223" i_stop="113055" i_length="169">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113054" g_stop="112791" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="596" r_length="264" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112790" i_stop="112582" i_length="209">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112581" g_stop="112558" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="620" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-M3908" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113561" e_stop="113224"/>
          <exon e_start="113054" e_stop="112791"/>
          <exon e_start="112581" e_stop="112558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAATGGAGTCACTGTTAATTTCTTCATCTTCTTCTTTGACAACTTCCCCCATTTTCTCTTCATCCAAACACGCCCTTACTCCTAAACCCCAAAGCCTCTCTTTCAACTCCAATGCTCGTTTAGTATTGTTCACCTGTGCAGCGCAGCAGATGAATTCACCACCCTCTACGGCGGCGACGACGGCGGAAAAGGAAGTGAAGCTATGGGGTGGCCGTTTCGAAGAGAGCGTTACCGATGCTGTGGAGAAGTTCACTGAGTCCATTTCGTTTGATAAAGCTCTCTATAAACAGGATATCATGGGTAGTAAAGCTCATGCTTCAATGCTTGCTAAACAGGTTAATTTATACGTTTTTCGTTTCTGGGTATTGCCAAGATTGGTTCTTTTCATTAAGGGGTTTTCTTATATTTACAAACAATCAGTATTAGCAGTTTAAATTGTGACATTTTGTTCTAATGAGGATAAAGGGTGTTTCTAATGTATGTGAATTTGCAATAATGTTGCAGGGATTGATGAGTGATATTGATAGAGATACTATCATAAAAGGTCTTGAAGAGATAGAGAGGCAAATTGAGGCAGGTGAATTTGTATGGAGAACAGATAGAGAGGATGTGCATATGAATATTGAAGCAGCACTTACTGATTTGGTTGGTGAACCTGCCAAAAAGCTTCACACTGCCCGGAGTAGAAATGATCAGGTTGCAACTGATTTTCGCTTGTGGTGTCGTGATGCTATTGACGGAATCATTTCATGCATTAAGAATCTTCAGGTCATTTGCTTTTTGTTTTGTGTTATCATCGTTTGGAAGTTCAATGCAATATCCACTTTTTTCCTGTATTTGATCAGCTAACATGAATATAGTGTATCGTGTTTTTCATATTATGGGATAAAATTGTGAAGTCGGAGCAAAGTTGATCAATTTGTGTGTTGCTTAAAGGTTATTATGCACTCATTCGTTTATTGCAACATAACCTGCAGATTGCAATGGTTGAATTAGCTCTC</genome_strand>
        <mrna_strand>CGTCAATGGAGTCACTGTTAATTTCTTCCTCTTCTTCTTTGATAACTTCCCCCATTTTCTCTTCATCCAAACACGCCCTTACTCCTAAACCCCAAAACCTCTCCTTCAATTCCAATGCTCGTTTAGTATTGTTCACCTGTGCAGCGCAGCAGATGAATTCACCACCCTCTACGGCGGCGA--A----GGAAAAGGAGGTGAAGCTATGGGGTGGCCGTTTCGAAGAGAGCGTCACCGATGCTGTGGAGAAGTTCACTGAGTCCATTTCGTTTGATAAAGCTCTCTATAAACAGGATATCATGGGTAGTAAAGCTCATGCCTCAATGCTCGCTAAACAG.........................................................................................................................................................................GGATTGATGAGTGATAGTGATAGAGATACTATCATAAAAGGTCTTGACGAGATACAGAGGCAAATTGAGGCAGGTGAATTTGTATGGAGGACAGATAGAGAGGATGTGCATATGAACATTGAAGCAGCGCTTACTGATTTGGTTGGTGAACCTGCCAAAAAGCTTCACACTGCGCGGAGTAGAAATGATCAAGTTGCAACTGACTTTCGCTTGTGGTGTCGTGATGCTATTGACGGAATCATTTCACGCATTAAGAATCTTCAG.................................................................................................................................................................................................................ATTGCAATGGTTGAACTAGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="68255" PGL_stop="67283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68255" e_stop="67283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="68255" e_stop="67283" e_length="973"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68255" stop="67523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68211" stop="67283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7140-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTTTTACACTCGACAGTTACACCCCACTACCCCCCACCCCCTCTTCCTCTTCCCCAAATCATCCATCAATTTCTCCGTCTCCATTTCAGATCAAACCCCCAAAGCCCTAAAATCCCCAAAAATTGAGGAAAAAATGGAGCATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTGTTAAGAGATAAAGAATTTGCCCCTTGTAAAGATTTTGCACTTCTTGCTCAAGAAACTGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTTAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGTCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTCGGCCTTGTTGCTGATGCTTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTGGTAGAGTTAAATTGACTCCTTCTGCTCGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCGAAGTTACCTGTGAGGAGGAGTAGTCGAGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCTAATCCCAGTCCGGTGAGTCAGAAGAGTTATCATAGTGCGCCGCCGAAGGCTACGGCGCCGGCGCCGATGAGTGGTGCGATGAGAGGGCAAAGGGTGGTGAATTTGTGGACGGCGTGTCCGTATTGTTACAATTTGTATGAGTATCCTAGGGTTTATGAAGGGTGTTGTTTACGATGTGATAAATGTAAAAGGGCTTTTACTGCTACTGAGATTTTGTCAATGCCACCAATGGTGCCAGGGAAAGAAGCTTATTATTGCATTTGGGGGTTTTTTCCAATGGG</gDNA_template>
            <first_frame> N  L  F  T  L  D  S  Y  T  P  L  P  P  T  P  S  S  S  S  P  N  H  P  S  I  S  P  S  P  F  Q  I  K  P  P  K  P  *  N  P  Q  K  L  R  K  K  W  S  I  I  Q  L  Q  A  E  Q  K  Q  R  D  C  *  E  L  Q  K  S  C  *  E  I  K  N  L  P  L  V  K  I  L  H  F  L  L  K  K  L  S  L  Y  L  K  D  L  T  R  S  *  Q  L  L  K  F  F  *  L  L  L  N  E  S  T  I  T  M  I  G  T  L  F  F  K  S  K  V  V  L  K  I  Q  S  L  S  R  N  S  I  V  V  L  L  F  F  F  I  L  I  K  T  N  T  H  L  Q  I  L  L  S  A  L  L  L  M  L  G  L  F  F  Q  I  H  Q  K  R  V  F  M  I  M  N  F  P  F  L  V  E  L  N  *  L  L  L  L  D  E  E  D  L  E  G  V  I  I  S  R  R  K  E  M  R  S  Y  L  *  G  G  V  V  E  R  V  I  R  V  R  V  K  I  R  T  L  I  P  V  R  *  V  R  R  V  I  I  V  R  R  R  R  L  R  R  R  R  R  *  V  V  R  *  E  G  K  G  W  *  I  C  G  R  R  V  R  I  V  T  I  C  M  S  I  L  G  F  M  K  G  V  V  Y  D  V  I  N  V  K  G  L  L  L  L  L  R  F  C  Q  C  H  Q  W  C  Q  G  K  K  L  I  I  A  F  G  G  F  F  Q  W  </first_frame>
            <second_frame>  I  F  L  H  S  T  V  T  P  H  Y  P  P  P  P  L  P  L  P  Q  I  I  H  Q  F  L  R  L  H  F  R  S  N  P  Q  S  P  K  I  P  K  N  *  G  K  N  G  A  S  Y  N  Y  K  Q  S  R  S  R  E  T  V  R  S  C  R  K  A  V  K  R  *  R  I  C  P  L  *  R  F  C  T  S  C  S  R  N  *  A  F  T  *  R  T  *  P  D  L  S  N  C  *  S  S  F  S  F  C  *  T  N  Q  Q  S  P  *  L  V  L  Y  S  S  N  P  R  S  Y  *  R  F  R  A  Y  Q  E  T  V  S  S  S  C  S  S  S  S  S  *  *  K  Q  I  P  I  F  R  Y  C  F  R  P  C  C  *  C  L  G  C  S  F  R  S  I  K  K  G  S  L  *  *  *  T  F  P  F  W  *  S  *  I  D  S  F  C  S  T  R  K  T  *  R  E  L  *  *  A  E  E  R  R  C  E  V  T  C  E  E  E  *  S  S  E  *  F  G  F  G  S  K  S  E  P  *  S  Q  S  G  E  S  E  E  L  S  *  C  A  A  E  G  Y  G  A  G  A  D  E  W  C  D  E  R  A  K  G  G  E  F  V  D  G  V  S  V  L  L  Q  F  V  *  V  S  *  G  L  *  R  V  L  F  T  M  *  *  M  *  K  G  F  Y  C  Y  *  D  F  V  N  A  T  N  G  A  R  E  R  S  L  L  L  H  L  G  V  F  S  N  G </second_frame>
            <third_frame>   S  F  Y  T  R  Q  L  H  P  T  T  P  H  P  L  F  L  F  P  K  S  S  I  N  F  S  V  S  I  S  D  Q  T  P  K  A  L  K  S  P  K  I  E  E  K  M  E  H  H  T  T  T  S  R  A  E  A  E  R  L  L  G  V  A  E  K  L  L  R  D  K  E  F  A  P  C  K  D  F  A  L  L  A  Q  E  T  E  P  L  L  E  G  P  D  Q  I  L  A  I  A  E  V  L  L  A  S  V  K  R  I  N  N  H  H  D  W  Y  S  I  L  Q  I  Q  G  R  T  E  D  S  E  L  I  K  K  Q  Y  R  R  L  A  L  L  L  H  P  D  K  N  K  Y  P  S  S  D  T  A  F  G  L  V  A  D  A  W  A  V  L  S  D  P  S  K  K  G  L  Y  D  N  E  L  S  L  F  G  R  V  K  L  T  P  S  A  R  R  G  R  P  R  G  S  Y  N  K  Q  K  K  G  D  A  K  L  P  V  R  R  S  S  R  A  S  N  S  G  S  G  Q  N  Q  N  P  N  P  S  P  V  S  Q  K  S  Y  H  S  A  P  P  K  A  T  A  P  A  P  M  S  G  A  M  R  G  Q  R  V  V  N  L  W  T  A  C  P  Y  C  Y  N  L  Y  E  Y  P  R  V  Y  E  G  C  C  L  R  C  D  K  C  K  R  A  F  T  A  T  E  I  L  S  M  P  P  M  V  P  G  K  E  A  Y  Y  C  I  W  G  F  F  P  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68253" stop="67285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFYTRQLHPTTPHPLFLFPKSSINFSVSISDQTPKALKSPKIEEKMEHHTTTSRAEAERLLGVAEKLLRDKEFAPCKDFALLAQETEPLLEGPDQILAIAEVLLASVKRINNHHDWYSILQIQGRTEDSELIKKQYRRLALLLHPDKNKYPSSDTAFGLVADAWAVLSDPSKKGLYDNELSLFGRVKLTPSARRGRPRGSYNKQKKGDAKLPVRRSSRASNSGSGQNQNPNPSPVSQKSYHSAPPKATAPAPMSGAMRGQRVVNLWTACPYCYNLYEYPRVYEGCCLRCDKCKRAFTATEILSMPPMVPGKEAYYCIWGFFPM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="73655" PGL_stop="77355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73655" e_stop="73857"/>
            <exon e_start="73990" e_stop="74172"/>
            <exon e_start="76622" e_stop="76700"/>
            <exon e_start="77301" e_stop="77355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="73655" e_stop="73857" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73858" i_stop="73989" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="73990" e_stop="74172" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74173" i_stop="76621" i_length="2449"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="76622" e_stop="76700" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76701" i_stop="77300" i_length="600"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77301" e_stop="77355" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="73857"/>
              <exon start="73990" stop="74172"/>
              <exon start="76622" stop="76700"/>
              <exon start="77301" stop="77355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATAGTACTTATTCCATCTCCAAAATTAGGTCTTACATATTTCTATACTCAATTATTGGCCCATTTTTGTATAGGTTTTCTAACTAGATCTAAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTATCTTCTTCGACCTGTTAAG : GATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCTAGCACCAG : CATGAAGGATATTCTTGGAAAGTATAAGTTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAG : CTAGAGAATAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTG</gDNA_template>
            <first_frame> *  I  V  L  I  P  S  P  K  L  G  L  T  Y  F  Y  T  Q  L  L  A  H  F  C  I  G  F  L  T  R  S  K  V  F  L  F  Y  *  G  F  L  Q  F  L  T  I  Y  I  F  C  E  I  S  *  K  V  *  G  K  I  I  I  F  F  D  L  L  R :   M  A  R  E  K  I  K  I  K  K  I  D  N  I  T  A  R  Q  V  T  F  S  K  R  R  R  G  L  F  K  K  A  E  E  L  S  V  L  C  D  A  D  V  A  L  I  I  F  S  A  T  G  K  L  F  D  F  A  S  T  S :   M  K  D  I  L  G  K  Y  K  L  Q  S  A  S  L  E  K  V  D  Q  P  S  L  D  L  Q  :  L  E  N  S  L  N  M  R  L  S  K  Q  V  A  D  K  T  R  </first_frame>
            <second_frame>  E  *  Y  L  F  H  L  Q  N  *  V  L  H  I  S  I  L  N  Y  W  P  I  F  V  *  V  F  *  L  D  L  K  F  S  S  F  I  R  V  S  Y  N  F  L  L  F  I  S  F  V  R  F  L  R  K  F  E  E  R  *  L  S  S  S  T  C  *   : G  W  Q  G  K  R  *  K  *  K  R  *  I  I  *  Q  Q  D  K  *  H  F  Q  R  G  E  E  G  F  L  R  K  L  K  S  F  L  F  F  V  M  L  M  L  L  L  S  F  F  L  L  L  E  S  Y  L  I  L  L  A  P   : A  *  R  I  F  L  E  S  I  S  C  N  Q  L  A  L  R  K  L  T  N  L  P  L  I  Y  S :   *  R  I  A  S  T  *  D  *  A  S  R  *  L  I  K  L  V </second_frame>
            <third_frame>   N  S  T  Y  S  I  S  K  I  R  S  Y  I  F  L  Y  S  I  I  G  P  F  L  Y  R  F  S  N  *  I  *  S  F  P  L  L  L  G  F  L  T  I  S  Y  Y  L  Y  L  L  *  D  F  L  E  S  L  R  K  D  N  Y  L  L  R  P  V  K  :  D  G  K  G  K  D  K  N  K  K  D  R  *  Y  N  S  K  T  S  N  I  F  K  E  E  K  R  A  F  *  E  S  *  R  A  F  C  S  L  *  C  *  C  C  S  Y  H  F  F  C  Y  W  K  A  I  *  F  C  *  H  Q  :  H  E  G  Y  S  W  K  V  *  V  A  I  S  *  P  *  E  S  *  P  T  F  P  *  F  T   : A  R  E  *  P  Q  H  E  I  K  Q  A  G  S  *  *  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73826" stop="73857"/>
                    <exon start="73990" stop="74172"/>
                    <exon start="76622" stop="76700"/>
                    <exon start="77301" stop="77354"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKIIIFFDLLRMAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSATGKLFDFASTSMKDILGKYKLQSASLEKVDQPSLDLQLENSLNMRLSKQVADKTR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="79016" PGL_stop="79825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79016" e_stop="79356"/>
            <exon e_start="79648" e_stop="79825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="79016" e_stop="79356" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79357" i_stop="79647" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="79648" e_stop="79825" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79016" stop="79356"/>
              <exon start="79648" stop="79825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTCCTTTTAGCTTGAGTTAATTTAGTATCTTGTTGATATTGCTTTCTTTTTATCGTTCTATAAGTCAATGGTTTATCGAAACAAATTTTTTTTTATTTTTGAAGATAAAGATAAGGTTCGTATGCACTTTTATCTTTCTTAAACATGACTTGTGAAATTATAAATATATTTATTAGTGTTTGTTACCATCAACCTAATTTAACTTGTTATATAACATGTTTATTGATCTTATATTCTATGTTACAAGTTTTACTAATTACTATAATCTTTTGTCTATGTTGTAACAGTGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGG : GCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGTATGTA</gDNA_template>
            <first_frame> L  F  L  L  A  *  V  N  L  V  S  C  *  Y  C  F  L  F  I  V  L  *  V  N  G  L  S  K  Q  I  F  F  Y  F  *  R  *  R  *  G  S  Y  A  L  L  S  F  L  N  M  T  C  E  I  I  N  I  F  I  S  V  C  Y  H  Q  P  N  L  T  C  Y  I  T  C  L  L  I  L  Y  S  M  L  Q  V  L  L  I  T  I  I  F  C  L  C  C  N  S  G  T  T  A  V  E  D  D  C  S  I  T  S  L  K  L  G :   L  P  F  S  *  Q  T  Q  R  R  K  L  L  L  K  I  V  L  I  I  I  F  G  *  *  Q  S  V  A  Y  I  Y  I  F  A  F  F  W  K  K  Y  Y  I  G  I  *  L  S  L  L  N  S  T  M  Y  Y  M  Y  V </first_frame>
            <second_frame>  C  S  F  *  L  E  L  I  *  Y  L  V  D  I  A  F  F  L  S  F  Y  K  S  M  V  Y  R  N  K  F  F  F  I  F  E  D  K  D  K  V  R  M  H  F  Y  L  S  *  T  *  L  V  K  L  *  I  Y  L  L  V  F  V  T  I  N  L  I  *  L  V  I  *  H  V  Y  *  S  Y  I  L  C  Y  K  F  Y  *  L  L  *  S  F  V  Y  V  V  T  V  V  L  L  Q  L  K  M  I  A  Q  L  H  L  *  S  *   : G  Y  H  S  A  N  K  L  K  G  G  S  F  C  *  R  L  Y  *  *  *  F  L  D  D  N  N  Q  W  H  I  Y  I  Y  L  P  S  F  G  K  N  I  T  L  E  Y  N  C  H  C  L  I  L  L  C  I  I  C  M   </second_frame>
            <third_frame>   V  P  F  S  L  S  *  F  S  I  L  L  I  L  L  S  F  Y  R  S  I  S  Q  W  F  I  E  T  N  F  F  L  F  L  K  I  K  I  R  F  V  C  T  F  I  F  L  K  H  D  L  *  N  Y  K  Y  I  Y  *  C  L  L  P  S  T  *  F  N  L  L  Y  N  M  F  I  D  L  I  F  Y  V  T  S  F  T  N  Y  Y  N  L  L  S  M  L  *  Q  W  Y  Y  C  S  *  R  *  L  L  N  Y  I  F  K  V  R  :  A  T  I  Q  L  T  N  S  K  E  E  A  F  V  E  D  C  T  N  N  N  F  W  M  I  T  I  S  G  I  Y  I  Y  I  C  L  L  L  E  K  I  L  H  W  N  I  I  V  T  A  *  F  Y  Y  V  L  Y  V  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79133" stop="79356"/>
                    <exon start="79648" stop="79663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSYALLSFLNMTCEIINIFISVCYHQPNLTCYITCLLILYSMLQVLLITIIFCLCCNSGTTAVEDDCSITSLKLGLPFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="113561" PGL_stop="112558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113561" e_stop="113224"/>
            <exon e_start="113054" e_stop="112791"/>
            <exon e_start="112581" e_stop="112558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.956"/>
          <exon-intron don_prob="0.966" acc_prob="0.977" e_score="0.962"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="113561" e_stop="113224" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113223" i_stop="113055" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="113054" e_stop="112791" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.977">
            <gDNA_intron_boundary i_start="112790" i_stop="112582" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="112581" e_stop="112558" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113561" stop="113224"/>
              <exon start="113054" stop="112791"/>
              <exon start="112581" stop="112558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3908" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCAATGGAGTCACTGTTAATTTCTTCATCTTCTTCTTTGACAACTTCCCCCATTTTCTCTTCATCCAAACACGCCCTTACTCCTAAACCCCAAAGCCTCTCTTTCAACTCCAATGCTCGTTTAGTATTGTTCACCTGTGCAGCGCAGCAGATGAATTCACCACCCTCTACGGCGGCGACGACGGCGGAAAAGGAAGTGAAGCTATGGGGTGGCCGTTTCGAAGAGAGCGTTACCGATGCTGTGGAGAAGTTCACTGAGTCCATTTCGTTTGATAAAGCTCTCTATAAACAGGATATCATGGGTAGTAAAGCTCATGCTTCAATGCTTGCTAAACAG : GGATTGATGAGTGATATTGATAGAGATACTATCATAAAAGGTCTTGAAGAGATAGAGAGGCAAATTGAGGCAGGTGAATTTGTATGGAGAACAGATAGAGAGGATGTGCATATGAATATTGAAGCAGCACTTACTGATTTGGTTGGTGAACCTGCCAAAAAGCTTCACACTGCCCGGAGTAGAAATGATCAGGTTGCAACTGATTTTCGCTTGTGGTGTCGTGATGCTATTGACGGAATCATTTCATGCATTAAGAATCTTCAG : ATTGCAATGGTTGAATTAGCTCTC</gDNA_template>
            <first_frame> R  Q  W  S  H  C  *  F  L  H  L  L  L  *  Q  L  P  P  F  S  L  H  P  N  T  P  L  L  L  N  P  K  A  S  L  S  T  P  M  L  V  *  Y  C  S  P  V  Q  R  S  R  *  I  H  H  P  L  R  R  R  R  R  R  K  R  K  *  S  Y  G  V  A  V  S  K  R  A  L  P  M  L  W  R  S  S  L  S  P  F  R  L  I  K  L  S  I  N  R  I  S  W  V  V  K  L  M  L  Q  C  L  L  N  R :   D  *  *  V  I  L  I  E  I  L  S  *  K  V  L  K  R  *  R  G  K  L  R  Q  V  N  L  Y  G  E  Q  I  E  R  M  C  I  *  I  L  K  Q  H  L  L  I  W  L  V  N  L  P  K  S  F  T  L  P  G  V  E  M  I  R  L  Q  L  I  F  A  C  G  V  V  M  L  L  T  E  S  F  H  A  L  R  I  F  R :   L  Q  W  L  N  *  L   </first_frame>
            <second_frame>  V  N  G  V  T  V  N  F  F  I  F  F  F  D  N  F  P  H  F  L  F  I  Q  T  R  P  Y  S  *  T  P  K  P  L  F  Q  L  Q  C  S  F  S  I  V  H  L  C  S  A  A  D  E  F  T  T  L  Y  G  G  D  D  G  G  K  G  S  E  A  M  G  W  P  F  R  R  E  R  Y  R  C  C  G  E  V  H  *  V  H  F  V  *  *  S  S  L  *  T  G  Y  H  G  *  *  S  S  C  F  N  A  C  *  T   : G  I  D  E  *  Y  *  *  R  Y  Y  H  K  R  S  *  R  D  R  E  A  N  *  G  R  *  I  C  M  E  N  R  *  R  G  C  A  Y  E  Y  *  S  S  T  Y  *  F  G  W  *  T  C  Q  K  A  S  H  C  P  E  *  K  *  S  G  C  N  *  F  S  L  V  V  S  *  C  Y  *  R  N  H  F  M  H  *  E  S  S   : D  C  N  G  *  I  S  S  </second_frame>
            <third_frame>   S  M  E  S  L  L  I  S  S  S  S  S  L  T  T  S  P  I  F  S  S  S  K  H  A  L  T  P  K  P  Q  S  L  S  F  N  S  N  A  R  L  V  L  F  T  C  A  A  Q  Q  M  N  S  P  P  S  T  A  A  T  T  A  E  K  E  V  K  L  W  G  G  R  F  E  E  S  V  T  D  A  V  E  K  F  T  E  S  I  S  F  D  K  A  L  Y  K  Q  D  I  M  G  S  K  A  H  A  S  M  L  A  K  Q  :  G  L  M  S  D  I  D  R  D  T  I  I  K  G  L  E  E  I  E  R  Q  I  E  A  G  E  F  V  W  R  T  D  R  E  D  V  H  M  N  I  E  A  A  L  T  D  L  V  G  E  P  A  K  K  L  H  T  A  R  S  R  N  D  Q  V  A  T  D  F  R  L  W  C  R  D  A  I  D  G  I  I  S  C  I  K  N  L  Q  :  I  A  M  V  E  L  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113559" stop="113224"/>
                    <exon start="113054" stop="112791"/>
                    <exon start="112581" stop="112558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMESLLISSSSSLTTSPIFSSSKHALTPKPQSLSFNSNARLVLFTCAAQQMNSPPSTAATTAEKEVKLWGGRFEESVTDAVEKFTESISFDKALYKQDIMGSKAHASMLAKQGLMSDIDRDTIIKGLEEIERQIEAGEFVWRTDREDVHMNIEAALTDLVGEPAKKLHTARSRNDQVATDFRLWCRDAIDGIISCIKNLQIAMVELAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 10920 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2184 bytes was the average size of a spliced alignment
$ 9248 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2312 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-05 12:04:49
-->
