<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-20 05:09:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345585" ref_strand="+" ref_description="SGN-E345585 [cTOF-18-C19]">
      <seq>aaggaagagatggagaagtggaatgagctacaatctcgattactatctcaattcaacaatgcttcttccatcattcagaggttacagattcttcaggattctaagaactatggtgctttgacatgtgttgaagccattcaggaagctgtcttgctgaaacagatgaattctctacaaaatatcttgctttcaatgaatgaaactatggaaaagtttcatgtggttgtgttgtcgcttgataagatggttcgtgatggtagacagctcataaaagggggatccgttcagaagaatgtgaaacagctacagcaacacgtcgggatgaagcctagcattgctgattgcttggatgggctacaacttctttatgagatgcaccaatcagagtaccgtctgaaattgtcggtcatatcagcaatttcagcatttgctttacagcctagtgcaactgatgatttagctgcacttcagcaactgttggatgatcagcctaacatccccaaagaggaagttcaagtcatttttgaaatcatatttgctgaagagatagcttgatgtctactaagcatggatccttggactgatgaagtgcttttggaacttgcaatgtgttttaagttaaggaagacttcagttctggctaaagagcangaaatatcttgcacttgggtgctacagtgctcgaactcttcaagtgtatgtgtcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="2527" stop="6864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2827" g_stop="2913" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2914" i_stop="3044" i_length="131">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.742" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3045" g_stop="3163" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="206" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3164" i_stop="3935" i_length="772">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3936" g_stop="4115" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="386" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4116" i_stop="4683" i_length="568">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4684" g_stop="4740" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="443" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4741" i_stop="5292" i_length="552">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5293" g_stop="5360" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="511" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5361" i_stop="6367" i_length="1007">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6368" g_stop="6564" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="708" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E345585" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2827" e_stop="2913"/>
          <exon e_start="3045" e_stop="3163"/>
          <exon e_start="3936" e_stop="4115"/>
          <exon e_start="4684" e_stop="4740"/>
          <exon e_start="5293" e_stop="5360"/>
          <exon e_start="6368" e_stop="6564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGAGATGGAGAAGTGGAATGAGCTACAATCTCGATTACTATCTCAATTCAACAATGCTTCTTCCATCATTCAGAGGTTACAGGTACTTTCCCCAGTTTTTTACCCATATTCCAATGGCTCAAAATCAGTGGCTGAGTCCGGATTTTTAAATTCAATATCTAGAAATATTGAGGGCTTTTGAAATAGCTCATAAAAGAATACATTTTTATGCAGATTCTTCAGGATTCTAAGAACTATGGTGCTTTGACATGTGTTGAAGCCATTCAGGAAGCTGTCTTGCTGAAACAGATGAATTCTCTACAAAATATCTTGCTTTCAATGAATGAAACTATGTAGGTCTTTCTAGTCCATGCTACTAAGTTCTGTCAATCCAAACTAATCCTTTTATCCATTTGGGAGCATTTTAATACCAAAAAATTGGAAAAGGTATGTTAAGTTAAGTAGTGCTTATCTTGAAATAGTGATTCTCAAGTCTCTAACTAGAATAAATTAACTACTGGAAAACACAATCTTTTGTCATTTTTATAACTCATAATATTGTTGTTTGACCTTTTTATATATGTTTCAGTATTGTTAAAAGCTAAAAGCGTAAAAAAGCTCTATGGTCATTTGGAGCTTTAAGCACAAAGAGAAAATAAAACGGGGGTTTAGTAAAAAGAAGGTGCAAATGGAGATAAAATACATGTATGATTAGTTCAAGTCTAATAATTATAAACATGAAAAACAAATATATGGATAGTGAAATTGAATATTTTGTAATGATGAAGTGATATACCACTTCTTAAGTGTCACCTCTTCAGGAAACACTCATTTGCTAGACAAATTTGTATTAGAGCCTTGATGGCAGGCACTGAAGTACACGGCACTCAACATTATTTGAGCCTCGCTTCAGGGTTTAAGCACGGCTTTGATAACACTGATTTGTTCTTTGTTCTTCTTTCTTGTATTTGATTATGCTAGTTAATGTTACTCCTTCGTAATGTTTTATAGCAGTAATTGAGTAGCTTCTGCAGTTGTATGTGCTTTAACTTCTTTGAGCTAGAAGTTGCTTTATCAACTAAGAAGGTTATTTTTTTGCCTCTTTATGTTTGGTTCAAAATCTAGGGAAAAGTTTCATGTGGTTGTGTTGTCGCTTGATAAGATGGTTCGTGATGGTAGACAGCTCATAAAAGGGGGATCCGTTCAGAAGAATGTGAAACAGCTACAGCAACACGTCGGGATGAAGCCTAGCATTGCTGATTGCTTGGATGGGCTACAACTTCTTTATGAGATGCACCAATCAGAGTATGCATAACGAAGAACATATATATTTTTCCTGTTTCTCTTTTCCTGCCTTGTTTGTCTTAAATGAGAAAATTTGTTGTCTTTTAGTACTAGCAAATTTCATCTTCGAGCCTTTATTAGGCATGAATATGTTGTTTTCCAAGTAAATTTTGTACTCTTTTTTTCCCCTTCTTTCTATCTTTGCCTTTTCTTTGTGATAGATGTACTTTGATCTTTCTTCCTAATAATTTGATAATCATATAATTATCCATAAAATAAAGCCAGATATCATGCAATCCGCCATCACCTTCTTAGTATTAGAAGATCACTTGCTCAATCAGGAGCTTTTTCTTGTTACTATGATAATGATTTGGTTGATCTATTTACTATGACAGGTAAGATGAAGAAACTTTCTGTTTGGAATCAAGTTTACCTCTTTCTTCTCTTTCTCCTCCAGGACCTCCTCACCTCCTCACCTCCAATGAATTTCATATAATCATTCTTCACTGTTGGAACTATTTCTAATCCTTGCATTATTTGTGATATTGCATCAAACTTATGTTACTGATTCCCCCAGTACTTTTTTCAGGTACCGTCTGAAATTGTCGGTCATATCAGCAATTTCAGCATTTGCTTTACAGCCTAGGTATGATGTGACAGTTTTTGCCATTTATTTCTTCTCTAGATCTCACTGGCAGAGGTTGTGGGATAGGTTGTAATTTAGTTGTCCTCTGTCAATTTGCTTGGTTCCCCAAGAAAAATGTATAGGTAATCCTAACTGATGAAAATAAAGACCTTAGCTCCTATCCAGTGACACCATTTTTTATTTCAAGTGTAATTTAACTAGTAAATAGGCCTCACATCAAGGTAAGAAGTAATAATGCAGCATAATAATTTTCTTCATTTGAATCAATGCACTAATGGTATGCAGACTGCAGGCCTCAGTAATTTCTAAACGTTTCATGAATTATCTCTACAGTTTTATGGCTGTATTGATTTTCAAGCTTTGGTCTACACACAATTTTTCTGTTCTTTCAAAGGCTATGATTTTATGTCAGTATTTTTCGAATGAATACTTCCTAGAAAAGGAACAAAATAGTCAAGAATATGCAGAACTACTTTAAATAGGCACTTTTCATTAGGTTCCGTCTCTCTCTCTAAACATTTATGCACATATTGTAACTCGACTATCTTGCAGTGCAACTGATGATTTAGCTGCACTTCAGCAACTGTTGGATGATCAGCCTAACATCCCCAAAGAGGAAGGTGAGTGAACCTAGTAAAGGAAATCAAGTGACTTGTTTATTGATATGGCATATGATGTGAGTTTGAATCTGTGCAAATCCCATTGTTAACGAAACTGGTGTAAGTATGAATCCAACCGTCTATCAGACAGTTCATCAATATAAGGCTGCTGTTATTCTTTCCTGTGAAATAAACATGTTGTCAGAACAAACTGTTATACCATGGAAACTGTTATACCATGGCACATTTATGAAGAGAAGAATTCAAAATGTATTTTGGTTTTGTCAACAGTTTGGTGTGGTGATTACAAAGTTCGATTTCTTTGAGAAAGGAAAGAAACACCTTTGTATTAGAGGTACCAGTCAGTGAGTATGCATTTGTCTGACATGAGTCGATAATTTTCTCAGACATGAGTATGTGGCAACCTTAAAATAGAAGGCAGAGGTTCCTTTGTTGTGGCCTGAAATAAAGATATGGATGTTGACTTGCTAATGCATGGAGAGATCTATTATGGAAGAAAAGAGAAGACCTGGATATTGCCCCTTACTCCTGGATTACCTGATCTCTAGGCTTACAGTCAACCTAGAAGGCTCAGGAGTTAACTTAAGAGATAGTAAATATTGAAACTGTATCAAATATATGAATTTTAACACTTTCAGTCTCAGATATTTAGATTCTGTGATTCCTCCTCTTCCCTTTGCTGATTAGGTATTTAGGCAGCTGTTACTCACCGTGATATTTTTTGAGTTACTGATGTTGTGTAACTTTGTTTAATCATCTCATCAAGTTATCTAAGTCCTGTAAGTTAAAGCTCCTCAGAAATATACTAGGTGAGAGCAACCATATGAAGCCTCTTAACCATGTTGTTTTGCTTGTAGCTACACTTAAACTTTATGCAGTAAGGTCTTGCTAGCTTGAATCGAGTTTCAGTTGTGTAAAAAAAGAAGCTTGTAAAGCATTGTTTTAACTGCCCACCATACATGTTATTGAACCCCAACTTCGACATTCTAATTGCTTCTCTTCTGCAGTTCAAGTCATTTTTGAAATCATATTTGCTGAAGAGATAGCTTGATGTCTACTAAGCATGGATCCTTGGACTGATGAAGTGCTTTTGGAACTTGCAATGTGTTTTAAGTTAAGGAAGACTTCAGTTCTGGCTAAAGAGCAGGAAATATCTTGCACTTGGGTGCTACAGTGCTCGAACTCTTCAAGTGTATGTGTCGGA</genome_strand>
        <mrna_strand>AAGGAAGAGATGGAGAAGTGGAATGAGCTACAATCTCGATTACTATCTCAATTCAACAATGCTTCTTCCATCATTCAGAGGTTACAG...................................................................................................................................ATTCTTCAGGATTCTAAGAACTATGGTGCTTTGACATGTGTTGAAGCCATTCAGGAAGCTGTCTTGCTGAAACAGATGAATTCTCTACAAAATATCTTGCTTTCAATGAATGAAACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAGTTTCATGTGGTTGTGTTGTCGCTTGATAAGATGGTTCGTGATGGTAGACAGCTCATAAAAGGGGGATCCGTTCAGAAGAATGTGAAACAGCTACAGCAACACGTCGGGATGAAGCCTAGCATTGCTGATTGCTTGGATGGGCTACAACTTCTTTATGAGATGCACCAATCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTCTGAAATTGTCGGTCATATCAGCAATTTCAGCATTTGCTTTACAGCCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGATGATTTAGCTGCACTTCAGCAACTGTTGGATGATCAGCCTAACATCCCCAAAGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGTCATTTTTGAAATCATATTTGCTGAAGAGATAGCTTGATGTCTACTAAGCATGGATCCTTGGACTGATGAAGTGCTTTTGGAACTTGCAATGTGTTTTAAGTTAAGGAAGACTTCAGTTCTGGCTAAAGAGCANGAAATATCTTGCACTTGGGTGCTACAGTGCTCGAACTCTTCAAGTGTATGTGTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244042" ref_strand="+" ref_description="SGN-E244042 [cLEE-1-F1]">
      <seq>attttccaaaaaccagtgtatttttagaggatccgccatgggtgtggcgacatttttggagaatccaagcaacaccgctttggtgaagcagagaattatcttgattgatcactgtagatggaaggttttggaccttggaaatggaagagatgactttaagtgttgtgtatactcagtttcatttatttatatgtctgcaactttgtataaacaaccttttgttttatttttccttggtcagtagcatggttttgattaaacagctaaatccaataatacaattttaacacaaattcttcctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="6264" stop="7166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6564" g_stop="6871" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E244042" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6564" e_stop="6871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCAAAAACCAGTGTATTTTTAGAGGATCCGCCATGGGTGTGGCGACATTTTTGGAGAATCCAAGCAACACCGCTTTGGTGAAGCAGAGAATTATCTTGATTGATCACTGTAGATGGAAGGTTTTGGACCTTGGAAATGGAAGAGATGACTTTAAGTGTTGTGTATACTCAGTTTCATTTATTTATATGTCTGCAACTTTGTATAAACAACCTTTTGTTTTATTTTTCCTTGGTCAGTAGCATGGTTTTGATTAAACAGCTAAATCCAATAATACAATTTTAACACAAATTCTTCCTAATGTCT</genome_strand>
        <mrna_strand>ATTTTCCAAAAACCAGTGTATTTTTAGAGGATCCGCCATGGGTGTGGCGACATTTTTGGAGAATCCAAGCAACACCGCTTTGGTGAAGCAGAGAATTATCTTGATTGATCACTGTAGATGGAAGGTTTTGGACCTTGGAAATGGAAGAGATGACTTTAAGTGTTGTGTATACTCAGTTTCATTTATTTATATGTCTGCAACTTTGTATAAACAACCTTTTGTTTTATTTTTCCTTGGTCAGTAGCATGGTTTTGATTAAACAGCTAAATCCAATAATACAATTTTAACACAAATTCTTCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302448" ref_strand="+" ref_description="SGN-E302448 [cLEW-27-O16]">
      <seq>tttgtttgtattcatctaaacccctgctgccagctccttttccttcctttcttcttcctcacccccaaaccaaccacaatccatgcccccattctaaccctaattcaagattcatggaagaaattgaattgtgcttaatttcatccttgggttttgtttgagaattgatttcataaattccctttgagtcttgtgagctgagtaacacagtcttgttttcataaaggtacaaagctttaatggctgaaagctgggatgggaatcatgatcctggtagcccgtctgaggagagttaccatctcgagagactgcacatagaaccaatttatgatgcattcatatgccctttgacaaaacaagtaatgcaggatcctgttactctggaaaatggcatgacttttgagagggaagctattgagaaatggttcaaggagtgtagggatagtggaagaaagcctgtttgccctttaacacatagagatctgaaaagcacagagctgaatccaagtatagctctacgaaataccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="7489" stop="9347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7789" g_stop="8014" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8015" i_stop="8742" i_length="728">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8743" g_stop="9047" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="531" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E302448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7789" e_stop="8014"/>
          <exon e_start="8743" e_stop="9047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGTATTCATCTAAACCCCTGCTGCCAGCTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAGGTATGAACTTTTTCAGCTGACTTGTGAAAAGTTCAATTCTTTTCTAGTTTTCTTACAACCCCAAGTAGAAGTTTTTGTTTACTCTTTTTTTTTTTTGCTAGTTGAAATTGGGGTTCAAATGGTGTTGGTTTATATTGACTTTAGTGATTGAACTTTGATCAGGGAATTATTAGTTTTCCTGTTGGTCATTTATTTGGATCACTGTAATTGTGATCTTTGTTTGAAAAAGTACTAGTTGTAATTTCTCTTGTTTTGTTTTGTTCCCATTTTCAATGATGGAATTTTGTAGATACAGAAAGCATGATTTTGGTGTATATCAGCAAAGAAGAATAACGACAACAAGTGAATAGAAGTGAAATTGCCAATGGCTTGATAAATAATCAAAGCTTGGATAAAAAAATTCTTTAAGTGGACAATCACTTAGGATTGTGTATAGCATCCTATGAAGTTTCTTTTAGATTTTGGATTATCTTCTCTTCCCAATTTTTTTGTTTTCTTTGTTGGTGTTATGCGGTGTTGCTTTTAACTCGATAATATAACTCCAGAAAAATGGATAAGGGACATAGTGCTTCACTAATTTAGATTTTCTTTCTCAATGATATAATGGCAGCTGTAGTATTTCATATCAATGGTAGCGAACTCTTGCTCAAGAGGTCGGTTTATGCATAGCGTGTCATTTGTTTGAGATTCTGTGTCGGGATCTAAAGTTATGTTAGATGCTTTGACAGGTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTG</genome_strand>
        <mrna_strand>TTTGTTTGTATTCATCTAAACCCCTGCTGCCAGCTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740360" ref_strand="+" ref_description="SGN-E740360 [LC21AD09]">
      <seq>gcagagggccacctccttttccttcctttcttcttcctcacccccaaaccaaccacaatccatgcccccattctaaccctaattcaagattcatggaagaaattgaattgtgcttaatttcatccttgggttttgtttgagaattgatttcataaattccctttgagtcttgtgagctgagtaacacagtcttgttttcataaaggtacaaagctttaatggctgaaagctgggatgggaatcatgatcctggtagcccgtctgaggagagttaccatctcgagagactgcacatagaaccaatttatgatgcattcatatgccctttgacaaaacaagtaatgcaggatcctgttactctggaaaatggcatgacttttgagagggaagctattgagaaatggttcaaggagtgtagggatagtggaagaaagcctgtttgccctttaacacatagagatctgaaaagcacagagctgaatccaagtatagctctacgaaataccattgaagaatggaatgcaaggaatgaagctgcacaaattgatatggctcgcagatcattatctatgggtagtgcggagggtgatattatgcaggctttaaagtttgttcagcacctttgccaaaaaagtcgcgccaacaaacatgttatcaggaatgcagatctcatacccatgattgtagacatgttaaaaaccagtagccgcagagttcgatgtaaagctcttgaaacgcttctagttgtggtagaggacgatgatgacaataaggaaacaatggctgagggcgacaatgtacccacaatattcaaattcttatcaaatgaacaatcccaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="7517" stop="9814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7822" g_stop="8014" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="205" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8015" i_stop="8742" i_length="728">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8743" g_stop="9310" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="773" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9311" i_stop="9443" i_length="133">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9444" g_stop="9516" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="845" r_length="72" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E740360" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7822" e_stop="8014"/>
          <exon e_start="8743" e_stop="9310"/>
          <exon e_start="9444" e_stop="9516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAGGTATGAACTTTTTCAGCTGACTTGTGAAAAGTTCAATTCTTTTCTAGTTTTCTTACAACCCCAAGTAGAAGTTTTTGTTTACTCTTTTTTTTTTTTGCTAGTTGAAATTGGGGTTCAAATGGTGTTGGTTTATATTGACTTTAGTGATTGAACTTTGATCAGGGAATTATTAGTTTTCCTGTTGGTCATTTATTTGGATCACTGTAATTGTGATCTTTGTTTGAAAAAGTACTAGTTGTAATTTCTCTTGTTTTGTTTTGTTCCCATTTTCAATGATGGAATTTTGTAGATACAGAAAGCATGATTTTGGTGTATATCAGCAAAGAAGAATAACGACAACAAGTGAATAGAAGTGAAATTGCCAATGGCTTGATAAATAATCAAAGCTTGGATAAAAAAATTCTTTAAGTGGACAATCACTTAGGATTGTGTATAGCATCCTATGAAGTTTCTTTTAGATTTTGGATTATCTTCTCTTCCCAATTTTTTTGTTTTCTTTGTTGGTGTTATGCGGTGTTGCTTTTAACTCGATAATATAACTCCAGAAAAATGGATAAGGGACATAGTGCTTCACTAATTTAGATTTTCTTTCTCAATGATATAATGGCAGCTGTAGTATTTCATATCAATGGTAGCGAACTCTTGCTCAAGAGGTCGGTTTATGCATAGCGTGTCATTTGTTTGAGATTCTGTGTCGGGATCTAAAGTTATGTTAGATGCTTTGACAGGTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAGGTTGTAGAACTTCGGTAAAATAATATTTATGTTGTTACCAAAGTCTGTTTTATGATGTTGATTATTCCTACTGTTTATGTTTTCCCTTATTAATTTTTTCTCTTTCGTTATATGCCCTGCTCCTTTCTTGCAGGAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAG</genome_strand>
        <mrna_strand>CTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAG.....................................................................................................................................GAAACAATGGCTGAGGGCGACAATGTACCCACAATATTCAAATTCTTATCAAATGAACAATCCCAA-AAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542087" ref_strand="-" ref_description="SGN-E542087 [TUS-63-D12](-)">
      <seq>ccctcgagagactgcacatagaaccaatttatgatgcattcatatgccctttgacaaaacaagtaatgcaggatcctgttactctggaaaatggcatgacttttgagagggaagctattgagaaatggttcaaggagtgtagggatagtggaagaaagcctgtttgccctttaacacatagagatctgaaaagcacagagctgaatccaagtatagctctacgaaataccattgaagaatggaatgcaaggaatgaagctgcacaaattgatatggctcgcagatcattatctatgggtagtgcggagggtgatattatgcaggctttaaagtttgttcagcacctttgccaaaaaagtcgcgccaacaaacatgttatcaggaatgcagatctcatacccatgattgtagacatgttaaaaaccagtagccgcagagttcgatgtaaagctcttgaaacgcttctagttgtggtagaggacgatgatgacaataaggaaacaatggctgagggcgacaatgtacgcacaatagtcaaattcttatcaaatgaacaatccaaagaaagagaggcagccatttctttgctgtatgagctatccaaatctaaaaatttgtgcggaaagatcggttcagttaatggggccattctaattctggttgggatggccagcagcaaatctgagaatcttgtgactgttgaaaaggctgagaatactctggagaatctggaaaagtgtgagattaatgtaaaacaaatggcagaaaatggccggctgcaacccctattaactctactacttgaaggatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="8516" stop="10059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8814" g_stop="9310" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9311" i_stop="9443" i_length="133">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9444" g_stop="9753" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="807" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E542087" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542087" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8814" e_stop="9310"/>
          <exon e_start="9444" e_stop="9753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAGGTTGTAGAACTTCGGTAAAATAATATTTATGTTGTTACCAAAGTCTGTTTTATGATGTTGATTATTCCTACTGTTTATGTTTTCCCTTATTAATTTTTTCTCTTTCGTTATATGCCCTGCTCCTTTCTTGCAGGAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAG</genome_strand>
        <mrna_strand>CCCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAG.....................................................................................................................................GAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542090" ref_strand="-" ref_description="SGN-E542090 [TUS-63-D12]">
      <seq>agagctgaatccaagtatagctctacgaaataccattgaagaatgaatgcaaggaatgaagctgcacaaattgatatggctcgcagatcattatctatgggtagtgcggagggtgatattatgcaggctttaaagtttgttcagcacctttgccaaaaaagtcgcgccaacaaacatgttatcaggaatgcagatctcatacccatgattgtagacatgttaaaaaccagtagccgcagagttcgatgtaaagctcttgaaacgcttctagttgtggtagaggacgatgatgacaataaggaaacaatggctgagggcgacaatgtacgcacaatagtcaaattcttatcaaatgaacaatccaaagaaagagaggcagccatttctttgctgtatgagctatccaaatctaaaaatttgtgcggaaagatcggttcagttaatggggccattctaattctggttgggatggccagcagcaaatctgagaatcttgtgactgttgaaaaggctgagaatactctggagaatctggaaaagtgtgagattaatgtaaaacaaatggcagaaaatggccggctgcaacccctattaactctactacttgaaggatcatcagagaccaaactctccatggctgttttccttggtgagctggttcttaataatgatgtgaaagtgttagtggctagaactgttggttcatcactgatcagtatcatgagacatggtaatatgtcatcaagggaggctgctctaaaatctctaaatcaaatatcatctgatgagtctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="8710" stop="12541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9010" g_stop="9310" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9311" i_stop="9443" i_length="133">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9444" g_stop="9753" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="610" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9754" i_stop="12056" i_length="2303">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12057" g_stop="12241" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="795" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E542090" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542090" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9010" e_stop="9310"/>
          <exon e_start="9444" e_stop="9753"/>
          <exon e_start="12057" e_stop="12241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAGGTTGTAGAACTTCGGTAAAATAATATTTATGTTGTTACCAAAGTCTGTTTTATGATGTTGATTATTCCTACTGTTTATGTTTTCCCTTATTAATTTTTTCTCTTTCGTTATATGCCCTGCTCCTTTCTTGCAGGAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAGGTACTTTACCTGATGTCTGAGTGTCCATCTCTTGACCCTCTTTGTATTACTTTAAATATTTGTTCCAATTGATTGTTAAATGAAATGGAGCATGGGCCTAAGACAACCCCAAAAGTTATGTGGGATTTCCTTCATGGGCAGGGTAGGATGTACACAAACCTTACACTCAAATAAACTCCTTTTGTCTTAGGCAACATATTTTACCGTTTCTTATGATTCTAGTAGGTATTGTACACCATACACAATTAGGGATTTTGATGATGTGGGAGTTTGTAGGAAGTTCTTTACTTCAAAGCATGTCTAAACCGCGTTTAGTAGTTTTTGATAGGAAATAAACGGAGAGTTTACCCTAGAATTTCTAGACAGAATATGAAAGCCAAAAGGCAAAATATCATTAAGAATAATGGTTGAATGTATTAGAAAGCTGAAATACAGCTCTATTTATAGGAAAAAGGACTTTTAACAATCCTCATCATAATAATCTAGAACTCCTAATAACTGTAAATCAGGAAACTGATTAAAGGAACTAAAAAAATAACATTTTAAAACAAGGGAGCAATCAATTGATAAGTTACCTAAAATTAATATGACCTAACTGATACCCCAACCCTATATGACTTCTACATAACTCACCACGTAGCAGTTTGTTACAATAACAATGAACTATTAAAATGACTTTGTGGAGTGTTTCATGAAAGTTTCTATCTTCATTTCTGCATCAGCTATCCTTGGGTGGGAAAAAAACCTCATCTCATGCTTGGACACTGTCGATCAATAAGATGTCCATGCAATCCTACATCCTTTCTTCCTTTACCTTTGCCCTTCCAGTTGAAGTTTCTTCATGTGTAGATCTTCGCATTGCTTCCCCTCCTTGTCGTAATTCACTTCCTTATGTAGCATCCATTTCCTTTTCCCTGGTAATTGAAGTTCTTTGCATGTGCAGCTCTCTTAGTTTGCATCGCTTCCCTTTGTCGTAAATTCGTAATCACTTCCTTATCTAGCATATAAGTTGATTCTAAATTATCATGTGCTTCAAGTGCATACTTTTCCTCTGAAATTATGTGATGAATCATGGCATGATAGCGATGCATTGCTTGATATTCATGAATATTTTCTAACGAAATCAGATCTGAGTTTCCATTCTGTAATAGACGAAGTCTTGACTTTCAAAACCTTAGTAGTTAAACAGTCAGGTAGTCGGGGTGTACCTGATGACAGTTGCTAGTCCCTCGCCCGTCCTAGTATGCCCGTTGGTGAAAATTTGATACATTTTGGAACTCTTCTTAAACCCATGGTAGTTATTGTTTTTCTCATCATCATTCTGTATAGCCATAGAACCGTCATAGTTTAGAGGAGATCCCTAACTATGGAACGTGCTCCTATTTTTCATCATCAGACTTTAGTTATAACTTTTTTTCCTGGAATACTTGCCCTGCGTCTGAAATTTCATAGCAACTATCATGATTATTGTGTAAGATTTTTACTTCCTCATTCATGAACTTATCAATTATTACAATATTCATTAAAGTTCTCTTTAATTTCGTCCAACTCTTTCTCTAACAGCGTAGACTGTCTCGATTACACCTCTTTCTTTTTGACGTATTTTTTTGGGGGTGTCATATCTGACTCTATGGTCTTGATTATACAAATAGCTCAAGATTGCCACTTTCTACTCACTCCCTCTCTCACTCCCACGGAAAAGAGGACATGCAGGGGTAGAAAGAGAGTTCCTTATCAAGAGTGTAATTAGTAGTTTTTAGACTACTAAGCAACTCCCTAATAGGATAGGTTAGCATGATTCCTTTTATGTACAAGATCTTTTCTTTAAGCACTTACTAAGGAATCATTTGGTAAGAGATCTAGTAGTGAAGAAACTAGTTGGAACTTCAACATGTACATGGGGGAACTTGCTCACAGACATGTATGTGTATCTAGTTTTGTGTGTTTAGTGACTTTTTTGTTGGTTGGAGCTGCGGGGTGGGTGGGTTTGGAGCACAACCCTTCTTCTGATGTCCATTCAGTTAACTAAAAAATCAAATACTGTTGGCTGTTCCATACTTTCATTTAAAATTTTCTCCTTCAGACTTGTGTACTTACTAAACTGATTACTTCATGCTCTGTGTTTGAGCTAAGTGGATGTGCCCAAACTCATCACCCATGAACATTTGGGAGCAATTTCCCGCATTTACCATACTTGCACTGTTGTTTTCCTTACACTGATTACGTCTCTCTGAGCAAAATCATTTTTTTTATTTCATTCAACATCTTCCAAGTTAATTTTATTGTCCCGTCAATTGTTCTAGGATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAAGGGAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAGT</genome_strand>
        <mrna_strand>AGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAAT-GAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAG.....................................................................................................................................GAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAAGGGAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299963" ref_strand="-" ref_description="SGN-E299963 [cLEW-11-A12]">
      <seq>atgcagatctcatacccatgattgtagacatgttaaaaaccagtagccgcagagttcgatgtaaagctcttgaaacgcttctagttgtggtagaggacgatgatgacaataaggaaacaatggctgagggcgacaatgtacgcacaatagtcaaattcttatcaaatgaacaatccaaagaaagagaggcagccatttctttgctgtatgagctatccaaatctaaaaatttgtgcggaaagatcggttcagttaatggggccattctaattctggttgggatggccagcagcaaatctgagaatcttgtgactgttgaaaaggctgagaatactctggagaatctggaaaagtgtgagattaatgtaaaacaaatggcagaaaatggccggctgcaacccctattaactctactacttgaaggatcatcagagaccaaactctccatggctgttttccttggtgagctggttcttaataatgatgtgaaagtgttagtggctagaactgttggttcatcactgatcagtatcatgagacatggtaatatgtcatcaacccaggctgctctaaaatctctaaatcaaatatcatctgatgagtctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="8898" stop="12540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9198" g_stop="9310" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9311" i_stop="9443" i_length="133">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9444" g_stop="9753" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="423" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9754" i_stop="12056" i_length="2303">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12057" g_stop="12240" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="607" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E299963" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299963" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9198" e_stop="9310"/>
          <exon e_start="9444" e_stop="9753"/>
          <exon e_start="12057" e_stop="12240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAGGTTGTAGAACTTCGGTAAAATAATATTTATGTTGTTACCAAAGTCTGTTTTATGATGTTGATTATTCCTACTGTTTATGTTTTCCCTTATTAATTTTTTCTCTTTCGTTATATGCCCTGCTCCTTTCTTGCAGGAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAGGTACTTTACCTGATGTCTGAGTGTCCATCTCTTGACCCTCTTTGTATTACTTTAAATATTTGTTCCAATTGATTGTTAAATGAAATGGAGCATGGGCCTAAGACAACCCCAAAAGTTATGTGGGATTTCCTTCATGGGCAGGGTAGGATGTACACAAACCTTACACTCAAATAAACTCCTTTTGTCTTAGGCAACATATTTTACCGTTTCTTATGATTCTAGTAGGTATTGTACACCATACACAATTAGGGATTTTGATGATGTGGGAGTTTGTAGGAAGTTCTTTACTTCAAAGCATGTCTAAACCGCGTTTAGTAGTTTTTGATAGGAAATAAACGGAGAGTTTACCCTAGAATTTCTAGACAGAATATGAAAGCCAAAAGGCAAAATATCATTAAGAATAATGGTTGAATGTATTAGAAAGCTGAAATACAGCTCTATTTATAGGAAAAAGGACTTTTAACAATCCTCATCATAATAATCTAGAACTCCTAATAACTGTAAATCAGGAAACTGATTAAAGGAACTAAAAAAATAACATTTTAAAACAAGGGAGCAATCAATTGATAAGTTACCTAAAATTAATATGACCTAACTGATACCCCAACCCTATATGACTTCTACATAACTCACCACGTAGCAGTTTGTTACAATAACAATGAACTATTAAAATGACTTTGTGGAGTGTTTCATGAAAGTTTCTATCTTCATTTCTGCATCAGCTATCCTTGGGTGGGAAAAAAACCTCATCTCATGCTTGGACACTGTCGATCAATAAGATGTCCATGCAATCCTACATCCTTTCTTCCTTTACCTTTGCCCTTCCAGTTGAAGTTTCTTCATGTGTAGATCTTCGCATTGCTTCCCCTCCTTGTCGTAATTCACTTCCTTATGTAGCATCCATTTCCTTTTCCCTGGTAATTGAAGTTCTTTGCATGTGCAGCTCTCTTAGTTTGCATCGCTTCCCTTTGTCGTAAATTCGTAATCACTTCCTTATCTAGCATATAAGTTGATTCTAAATTATCATGTGCTTCAAGTGCATACTTTTCCTCTGAAATTATGTGATGAATCATGGCATGATAGCGATGCATTGCTTGATATTCATGAATATTTTCTAACGAAATCAGATCTGAGTTTCCATTCTGTAATAGACGAAGTCTTGACTTTCAAAACCTTAGTAGTTAAACAGTCAGGTAGTCGGGGTGTACCTGATGACAGTTGCTAGTCCCTCGCCCGTCCTAGTATGCCCGTTGGTGAAAATTTGATACATTTTGGAACTCTTCTTAAACCCATGGTAGTTATTGTTTTTCTCATCATCATTCTGTATAGCCATAGAACCGTCATAGTTTAGAGGAGATCCCTAACTATGGAACGTGCTCCTATTTTTCATCATCAGACTTTAGTTATAACTTTTTTTCCTGGAATACTTGCCCTGCGTCTGAAATTTCATAGCAACTATCATGATTATTGTGTAAGATTTTTACTTCCTCATTCATGAACTTATCAATTATTACAATATTCATTAAAGTTCTCTTTAATTTCGTCCAACTCTTTCTCTAACAGCGTAGACTGTCTCGATTACACCTCTTTCTTTTTGACGTATTTTTTTGGGGGTGTCATATCTGACTCTATGGTCTTGATTATACAAATAGCTCAAGATTGCCACTTTCTACTCACTCCCTCTCTCACTCCCACGGAAAAGAGGACATGCAGGGGTAGAAAGAGAGTTCCTTATCAAGAGTGTAATTAGTAGTTTTTAGACTACTAAGCAACTCCCTAATAGGATAGGTTAGCATGATTCCTTTTATGTACAAGATCTTTTCTTTAAGCACTTACTAAGGAATCATTTGGTAAGAGATCTAGTAGTGAAGAAACTAGTTGGAACTTCAACATGTACATGGGGGAACTTGCTCACAGACATGTATGTGTATCTAGTTTTGTGTGTTTAGTGACTTTTTTGTTGGTTGGAGCTGCGGGGTGGGTGGGTTTGGAGCACAACCCTTCTTCTGATGTCCATTCAGTTAACTAAAAAATCAAATACTGTTGGCTGTTCCATACTTTCATTTAAAATTTTCTCCTTCAGACTTGTGTACTTACTAAACTGATTACTTCATGCTCTGTGTTTGAGCTAAGTGGATGTGCCCAAACTCATCACCCATGAACATTTGGGAGCAATTTCCCGCATTTACCATACTTGCACTGTTGTTTTCCTTACACTGATTACGTCTCTCTGAGCAAAATCATTTTTTTTATTTCATTCAACATCTTCCAAGTTAATTTTATTGTCCCGTCAATTGTTCTAGGATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAAGGGAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAG</genome_strand>
        <mrna_strand>ATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAG.....................................................................................................................................GAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAACCCAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373611" ref_strand="+" ref_description="SGN-E373611 [TUS-33-G22](-)">
      <seq>aggggttgtgtgcaatgggttgttttatgtttattcagaaagtgataagctagcagcatatgacgttgagaagggctattgggttagaatccaaactagtccattccctccccgagttcatgaataccatcctaaacttatttgctgcaatagtcggctattcatgctctctgtctcctggtgtgaaggggaaggtcagattggcaggagaaacaaagcagtaaggaaactgtgggagctagatcttatgcctctaacttggagagaagtttcaatccatccagatgccccaatggattggaatgctgcatttatagctgataaaaactctatatttggagtcgaaatgttcaaaatattcgggcaggtgctagacttcttgaccgttggagatgtaactgatgctggaataaactggagccatatctcaaggaaccgtctcgcgcaagaattggatgctgcttcttgcttgacaaaatccatggcagtagtgcatttgtaaccgatcaagaactccaactagtcacaatatatgtgcagtcattttttctctctcctttattcttttgttgtggacgtttgatgatgtttaacttaaatctatattccatttgtttctattgatgttatgcaggtcattcaattgttctgtaatttgtcttttgagcagtgaaataataaactctggtttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="15231" stop="13937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14931" g_stop="14237" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="710"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E373611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14931" e_stop="14237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATATTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGAGCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTTTGTTGTGGACGTTTGATGATGTTTAACTTAAATCTATATTCCATTTGTTTCTATTGATGTTATGCAGGTCATTCAATTGTTCTGTAATTTGTCTTTTGAGCAGTGAAATAATAAACTCTGGTTTTTAA</genome_strand>
        <mrna_strand>AGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATATTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGAGCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTTTGTTGTGGACGTTTGATGATGTTTAACTTAAATCTATATTCCATTTGTTTCTATTGATGTTATGCAGGTCATTCAATTGTTCTGTAATTTGTCTTTTGAGCAGTGAAATAATAAACTCTGGTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309396" ref_strand="+" ref_description="SGN-E309396 [cLEY-22-F9]">
      <seq>gatgccccaatggattggaatgctgcatttatagctgataaaaactctatttttggagtcgaaatgttcaaaatattcgggcaggtgctagacttcttgaccgttggagatgtaactgatgctggaataaactggatccatatctcaaggaaccgtctcgcgcaagaattggatgctgcttcttgcttgacaaaatccatggcagtagtgcatttgtaaccgatcaagaactccaactagtcacaatatatgtgcagtcattttttctctctcctttattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="14948" stop="14065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14648" g_stop="14365" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E309396" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14648" e_stop="14365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATATTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGAGCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTT</genome_strand>
        <mrna_strand>GATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATTTTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGATCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373612" ref_strand="+" ref_description="SGN-E373612 [TUS-33-G22]">
      <seq>tgtggcgtaaagctgcaccaatgaagcatgcaagatcatcccctatcttaggtacttatgagatcagttcagattgtttaattattaggaatcaacaaactcgaggagacagaagattttaccgtccaagagttggtggtgtgtctgatgtttatgaagatcctcatagactttcagtgagacgccaatttcgccattcgctggatgagaacgaggttacatttttgcccaatgtgaaaccatacaagtttgtcaaacaaaaaagcgaacattcaaataaagatcaaagacgctttctcttgattgctgtaggaggtctcggttgctgggatgagcctctggattctggggaaatttatgattccatgtcaaataaatggacagagatccagaggcttcctgtagattttggaatagcttgttcaggggttgtgtgcaatgggttgttttatgtttattcagaaagtgataagctagcagcatatgacgttgagaagggctattgggttagaatccaaactagtccattccctccccgagttcatgaataccatcctaaacttatttgctgcaatagtcggctattcatgctctctgtctcctggtgtgaaggggaaggtcagattggcaggagaaacaaagcagtaaggaaactgtgggagctagatcttatgcctctaacttggagagaagtttcaatccatccagatgccccaatggattggaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="15655" stop="14324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15355" g_stop="14624" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E373612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15355" e_stop="14624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGATCCAGAGGCTTCCTGTAGATTTTGGAATAGCTTGTTCAGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTG</genome_strand>
        <mrna_strand>TGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGATCCAGAGGCTTCCTGTAGATTTTGGAATAGCTTGTTCAGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305654" ref_strand="+" ref_description="SGN-E305654 [cLEX-14-D4]">
      <seq>tgtggcgtaaagctgcaccaatgaagcatgcaagatcatcccctatcttaggtacttatgagatcagttcagattgtttaattattaggaatcaacaaactcgaggagacagaagattttaccgtccaagagttggtggtgtgtctgatgtttatgaagatcctcatagactttcagtgagacgccaatttcgccattcgctggatgagaacgaggttacatttttgcccaatgtgaaaccatacaagtttgtcaaacaaaaaagcgaacattcaaataaagatcaaagacgctttctcttgattgctgtaggaggtctcggttgctgggatgagcctctggattctggggaaatttatgattccatgtcaaataaatggacagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="15655" stop="14668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15355" g_stop="14968" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E305654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15355" e_stop="14968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGAT</genome_strand>
        <mrna_strand>TGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204549" ref_strand="+" ref_description="SGN-E204549 [cLEC-24-O11]">
      <seq>attctctgttgctggtgtccatgatgatgttggcgtcgttggaggttgttctagcattgctaactttgggaaggttgataagagctcattcaagacacataaaagcgtgctcgcttttagtcccttgatgagaatgtggcgtaaagctgcaccaatgaagcatgcaagatcatcccctatcttaggtacttatgagatcagttcagattgtttaattattaggaatcaacaaactcgaggagacagaagattttaccgtccaagagttggtggtgtgtctgatgtttatgaagatcctcatagactttcagtgagacgccaatctcgccattcgctggatgagaacgaggttacatttttgcccaatgtgaaaccatacaagtttgtcaaacaaaaaagcgaacattcaaataaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="15789" stop="14771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15489" g_stop="15071" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E204549" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15489" e_stop="15071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTGTTGCTGGTATCCATGATGATGTTTACGTCGTTGGAGGTTGTTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAATGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATC</genome_strand>
        <mrna_strand>ATTCTCTGTTGCTGGTGTCCATGATGATGTTGGCGTCGTTGGAGGTTGTTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAATGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATCTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248355" ref_strand="+" ref_description="SGN-E248355 [cLEG-1-A23]">
      <seq>aaatgtgcttattgaggcttccatttataantctggtatatgcttagatggtgtgcgcgaaatggaaaaacttgacactgacacctcgtttctggcgaatgaggcaggaaggttcattccagcgtccatggttgtttctttttggagttgtaaaagatggttgttgttccgcagaaatacatgcatttgatgtttccttcaaccaatggcacaaaatgaattctgaagttctgaaagggaggtttttattctctgttgctggtatccatgatgatgtttacgtcgttggaggttgctctagcattgctaactttgggaaggttgataagagctcattcaagacacataaaagcgtgctcgcttttagtcccttgatgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="16036" stop="15056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15736" g_stop="15356" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E248355" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15736" e_stop="15356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTGCTTATTGAGGCTTCCATTTATAAGTCTGGTGAATGCTAGGATGGTGTGCAAGAAATGGAGAAACTTGACACTGACACCTCGTTTCTGGCGAATGAGGCAGGAAGGTTCATTCCAGCGTCCATGGTTGTTTCTTTTTGGAGTTGTAAAAGATGGTTGTTGTTCCGCAGAAATACATGCATTTGATGTTTCCTTCAACCAATGGCACAAAATGAATTCTGAAGTTCTGAAAGGGAGGTTTTTATTCTCTGTTGCTGGTATCCATGATGATGTTTACGTCGTTGGAGGTTGTTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAA</genome_strand>
        <mrna_strand>AAATGTGCTTATTGAGGCTTCCATTTATAANTCTGGTATATGCTTAGATGGTGTGCGCGAAATGGAAAAACTTGACACTGACACCTCGTTTCTGGCGAATGAGGCAGGAAGGTTCATTCCAGCGTCCATGGTTGTTTCTTTTTGGAGTTGTAAAAGATGGTTGTTGTTCCGCAGAAATACATGCATTTGATGTTTCCTTCAACCAATGGCACAAAATGAATTCTGAAGTTCTGAAAGGGAGGTTTTTATTCTCTGTTGCTGGTATCCATGATGATGTTTACGTCGTTGGAGGTTGCTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314548" ref_strand="+" ref_description="SGN-E314548 [cTOA-20-I1]">
      <seq>ttcctttttaacattctttcacatgaggaccatttcatctttctgttgttgatccattcttgcttcactcagcttaaagatgctttctttttttgatatgacaacaagatctcatatggggttctgatttttttttctttttctaaaaaaaaaaatgaatcttgattcttgattgtggatccaaatggtctatggagctcaaatgacttgattaaagaggataataagatgacatcagaaagatttacaggagaagaatctcttcaacaagatttggagtctttaagcgtgtctaaaaggttagtcagaagtgtgagccaaaagttgaaaaagaagaaccttagaagtggaggagaagaagaggatgacagcaagggcatttccttgagatgtctaacactatatggcagagggggtggttgcaaagtgggtgctgacactggtgacgacctangggattcatgcggtagaagaagatcaaatgcaagtgaggaaggcaaaggatataacccgatatgtggaaatgaagaaacgtcagtagattgcttctcttatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="17689" stop="15538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17389" g_stop="17172" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17171" i_stop="16179" i_length="993">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16178" g_stop="15838" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="560" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E314548" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17389" e_stop="17172"/>
          <exon e_start="16178" e_stop="15838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCT-AAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAGGTTTGCTAACATGGTTTCTGTCCCTTTTCTTTTTTTCTCCATTTGGGTATGTAACTATGTTTCTGGTTTTAAGATTTGTTTGTAATAAAGTTTTGATCTTGTGAGTTCTACAGTATGGTTTCAGCTCATGTATGTTTTGAGCTTATTTTGTCTCTGTGCTGTCTAAGCTTTTGGATTTGGTTTATCTGTTTCTTTTTGTCCTGGGGTGGGTGGTTGAAGGGATTCTGATTATTGGAGATTCAATTGATTTTCTAGGTTAAGGGATTAGTGATGGATACTGGAAGATATTTCAGGAAGAAAAATAGTCAATGAAATTTGAAGCATCTTTGTTCATTTTAACCTAAAAATTGTGTATTTGCAATGTATAGGAGGTCTTTCTTTAGATTCCTAGTGGCTGTAGAGTCTTATATTTTGATCACTCTTGAAAAAGGGATATGCATTCATTTGTTAGTACCTAGGACTAGGTGATAGATTTTCCGGGCTTTTGTTCCCTCTACTCTAAGGTGTATGTGAGTTTGAGGAGTTATATTTGTCATTGCTTCAAGAAAGATTAGGTCTCTGCAAACAAGATAGAAGAACAAAAAGGGATTTTTTTGGAGTCTATAGAGGTTGCTTTGTTTATTGGTATGAGAAAGATATGACTTATTACTACTATATATTTCAAATGAACTATTCATAAAAAGAAATTTTTTTGTGTGATTATGTGTATTCTATATTTACTTACGTTACCAATTATCAATTCTTTGGTCATTGTCATTGAGATTCATGTCTATTATTATTTAGGCATATAGATATTACCTCTTTTTTTTTCTCCTTTCAACCAAAGAAAAATGATTGTGTGATGTTGGTGCTTGGTGTGTATTTGAAGAAGTATCTAGGACTTGAATTTCTAACAACATGGTCAATTTATGTCACAAACATTCCACATTATGATCATTAAACAGTGGAAAGGGATCAGTTATATATTGATTGTCTTTTTTAATACTGTTGTAGGATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGCAGAGGGGGTGGTTGCAAAGTGGGTGCTGACACTGGTGACGACCTAGGGGATTCATGCGGTAGAAGAAGATCAAATGCAAGTGAGGAAGGCAAAGGATATAACCCGATATGTGGAAATGAAGAAACGTCAGTAGATTGCTTCTCTTATGGGAT</genome_strand>
        <mrna_strand>TTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCTAAAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGCAGAGGGGGTGGTTGCAAAGTGGGTGCTGACACTGGTGACGACCTANGGGATTCATGCGGTAGAAGAAGATCAAATGCAAGTGAGGAAGGCAAAGGATATAACCCGATATGTGGAAATGAAGAAACGTCAGTAGATTGCTTCTCTTATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212385" ref_strand="+" ref_description="SGN-E212385 [cLEC-74-O2]">
      <seq>ctacttgtaatgataattaggttcttacctattttgattacaatttgtggggattcctttttaacattctttcacatgaggaccatttcatctttctgttgttgatccattcttgcttcactcagcttaaagatgctttctttttttgatatgacaacaagatctcatatggggttctgatttttttttctttttctaaaaaaaaaatgaatcttgattcttgattgtggatccaaatggtctatggagctcaaatgacttgattaaagaggataataagatgacatcagaaagatttacaggagaagaatctcttcaacaagatttggagtctttaagcgtgtctaaaaggttagtcagaagtgtgagccaaaagttgaaaaagaagaaccttagaagtggaggagaagaagaggatgacagcaagggcatttccttgagatgtctaacactatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="17742" stop="15690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17442" g_stop="17172" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17171" i_stop="16179" i_length="993">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16178" g_stop="15990" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="460" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E212385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17442" e_stop="17172"/>
          <exon e_start="16178" e_stop="15990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTGTAATGATAATTAGGTTCTTACCTATTTTGATTACAATTTGTGGGGATTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCTAAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAGGTTTGCTAACATGGTTTCTGTCCCTTTTCTTTTTTTCTCCATTTGGGTATGTAACTATGTTTCTGGTTTTAAGATTTGTTTGTAATAAAGTTTTGATCTTGTGAGTTCTACAGTATGGTTTCAGCTCATGTATGTTTTGAGCTTATTTTGTCTCTGTGCTGTCTAAGCTTTTGGATTTGGTTTATCTGTTTCTTTTTGTCCTGGGGTGGGTGGTTGAAGGGATTCTGATTATTGGAGATTCAATTGATTTTCTAGGTTAAGGGATTAGTGATGGATACTGGAAGATATTTCAGGAAGAAAAATAGTCAATGAAATTTGAAGCATCTTTGTTCATTTTAACCTAAAAATTGTGTATTTGCAATGTATAGGAGGTCTTTCTTTAGATTCCTAGTGGCTGTAGAGTCTTATATTTTGATCACTCTTGAAAAAGGGATATGCATTCATTTGTTAGTACCTAGGACTAGGTGATAGATTTTCCGGGCTTTTGTTCCCTCTACTCTAAGGTGTATGTGAGTTTGAGGAGTTATATTTGTCATTGCTTCAAGAAAGATTAGGTCTCTGCAAACAAGATAGAAGAACAAAAAGGGATTTTTTTGGAGTCTATAGAGGTTGCTTTGTTTATTGGTATGAGAAAGATATGACTTATTACTACTATATATTTCAAATGAACTATTCATAAAAAGAAATTTTTTTGTGTGATTATGTGTATTCTATATTTACTTACGTTACCAATTATCAATTCTTTGGTCATTGTCATTGAGATTCATGTCTATTATTATTTAGGCATATAGATATTACCTCTTTTTTTTTCTCCTTTCAACCAAAGAAAAATGATTGTGTGATGTTGGTGCTTGGTGTGTATTTGAAGAAGTATCTAGGACTTGAATTTCTAACAACATGGTCAATTTATGTCACAAACATTCCACATTATGATCATTAAACAGTGGAAAGGGATCAGTTATATATTGATTGTCTTTTTTAATACTGTTGTAGGATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGC</genome_strand>
        <mrna_strand>CTACTTGTAATGATAATTAGGTTCTTACCTATTTTGATTACAATTTGTGGGGATTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCTAAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312382" ref_strand="+" ref_description="SGN-E312382 [cTOA-5-B24]">
      <seq>agaaatcgggcaaatggcgattaagctgtgtacgagaggtattgttttgattgttgttattgctttcttatcggttttgccagctacgctttgcatcgaagataaatgttctgcttgttccgccattgctgaggagctcgagcatggactattgaaagaaaagccaagaaaccatttagacatgagacatcgcctggattctaaaggtcagcgtgaagggaaacttattgattacaggtcaaatattaatgatcaccttattgattaataaggtctttgctaaaatcaattcctaattgctttattcttttactttttcttacaacttcaaaatctgttacccagttgtatataagaactaacctaggtcacagttcaaaaatatttctctatatcccatcaactttcaggttgaagagctcattgatctatctgctgtgttgttcgctcataccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="19395" stop="21538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19695" g_stop="19824" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19825" i_stop="20097" i_length="273">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20098" g_stop="20124" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="157" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20125" i_stop="20937" i_length="813">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20938" g_stop="21238" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="458" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E312382" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19695" e_stop="19824"/>
          <exon e_start="20098" e_stop="20124"/>
          <exon e_start="20938" e_stop="21238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCGGGCAAATGGCGATTAAGCTGTATACGAGATCTATTGTTTTGATTGTTGTTATTGCTTTCTTATCGGTTTTGCCAGCTACGCTTTGCATCGAAGATAAATGTTCTGCTTGTTCCGCCATTGCTGTAAGTACTTACACTCGCTTTTACTCATTTTACGCCAATGTGTATATGTTTACTGTAACTTATTTCATTCGCAACGATCTAGTTTAGAGGACTTTGAAACCGATTGAAGACAAATTATTGGATACAGGGAATTTATTTAGTGGACTTCGATTATTTTGAGATTGAGAAGTAGTTGATTTGTAGTTGTATGAGCGCTATGAATACTAGATAAACAATTGATTTCACTTGTTGTGCCTGATATGGACCTGACTAGTTTGTTTTCATGCTTCTCAGGAGGAGCTCGAGCATGGACTATTGAAAGTAAGAAAATCATGTAGCTTCGTTGATGTTTCTCTCTTTTGTTGTGTATTTACCTTGTAGAAGTTTTCACAGCTCAATGTATCAGAAAAATAAAAAGGAAGAAAAACAAATTATTCTAGCTACATGCCATGATGCCATTTGACTCTATGTTTAAAATGGAGATATTTAGTATCATCTAGTATGATTTTAAAATTGGATATCAAAAAGCTGAATTGAGAATTACATTTACTTCTAACAAGGAGATGGAAATGTTTGAAGTTGTGCTGTTCAAGATATGATGTTTTTGGAAGACAAATGATGTGTTAACTCTCCATTCTGAAATGGTTGAACTACTCCATTCTTGTGTCTCACTAGCTTATGTTTATGTATAAGCCTTTGATTTATACATGGTGATGTAAGACTGCTTAAAGTTGTGCCAATACCAAACTTGATTCACATTTGAGACGAGAAGTTGTTAATACAATGTCTCATTCTCTGATATCCATATTTCATGGCTACTATGACCTATCATATTGTTGGGTCTCTGAAACTGCAATTTACTATAAGCAATCTTCTAAAAAGGACGGAAGATTCAAATGCAGGGTTACCTACATGGCTAACTCCTTGAGAAAGAGGACATAGTTAATAGTGCTATCAATAGTTTTATAGAATTTTTAAAAATCGAACTGCTAAAATTGTTGATTACTAGGATAACATATTATACATTAGAAATAAAAGATGTCTGTTCAAGTTGTCTTTCACTTATTTAAAGTAGTATAGTTTTATGTCTATTCTTTGACATTCTCACTGGGCTAATATATGTATATTTTATAGGAAAAGCCAAGAAACCATTTAGACATGAGACATCGCCTGGATTCTAAAGGTCAGCGTGAAGGGAAACTTATTGATTACAGGTCAAATATTAATGATCACCTTATTGATTAATAAGGTCTTTGCTAAAATCAATTCCTAATTGCTTTATTCTTTTACTTTTTCTTACAACTTCAAAATCTGTTACCCAGTTGTATATAAGAACTAACCTAGGTCACAGTTCAAAAATATTTCTCTATATCCCATCAACTTTCAGGTTGAAGAGCTCATTGATCTATCTGCTGTGTTGTTCGCTCATACCACA</genome_strand>
        <mrna_strand>AGAAATCGGGCAAATGGCGATTAAGCTGTGTACGAGAGGTATTGTTTTGATTGTTGTTATTGCTTTCTTATCGGTTTTGCCAGCTACGCTTTGCATCGAAGATAAATGTTCTGCTTGTTCCGCCATTGCT.................................................................................................................................................................................................................................................................................GAGGAGCTCGAGCATGGACTATTGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCCAAGAAACCATTTAGACATGAGACATCGCCTGGATTCTAAAGGTCAGCGTGAAGGGAAACTTATTGATTACAGGTCAAATATTAATGATCACCTTATTGATTAATAAGGTCTTTGCTAAAATCAATTCCTAATTGCTTTATTCTTTTACTTTTTCTTACAACTTCAAAATCTGTTACCCAGTTGTATATAAGAACTAACCTAGGTCACAGTTCAAAAATATTTCTCTATATCCCATCAACTTTCAGGTTGAAGAGCTCATTGATCTATCTGCTGTGTTGTTCGCTCATACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539130" ref_strand="+" ref_description="SGN-E539130 [TUS-58-L18](-)">
      <seq>tttccatagaagtataaacagtttgttacgtcctcatatttcttctgatatttttaacttaatacaacatacatttgtatgtccttccctcttttttattggaccatgtatcagtcatcccatgttgtactcaagatcaactaattttatcgatgaacaatatttactctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="23310" stop="24080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23610" g_stop="23780" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="172" polyA_stop="188"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E539130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23610" e_stop="23780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</genome_strand>
        <mrna_strand>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539132" ref_strand="+" ref_description="SGN-E539132 [TUS-58-L18]">
      <seq>tttccatagaagtataaacagtttgttacgtcctcatatttcttctgatatttttaacttaatacaacatacatttgtatgtccttccctcttttttattggaccatgtatcagtcatcccatgttgtactcaagatcaactaattttatcgatgaacaatatttactctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="23310" stop="24080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23610" g_stop="23780" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="172" polyA_stop="188"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E539132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23610" e_stop="23780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</genome_strand>
        <mrna_strand>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279943" ref_strand="+" ref_description="SGN-E279943 [cLER-8-B17]">
      <seq>ttccatagaagtataaacagtttgttacgtcctcatatttcttctgatatttttaacttaatacaacatacatttgtatgtccttccctcttttttattggaccatgtatcagtcatcccatgttgtactcaagatcaactaattttatcgatgaacaatatttactctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="23311" stop="24080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23611" g_stop="23780" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="171" polyA_stop="187"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E279943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23611" e_stop="23780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</genome_strand>
        <mrna_strand>TTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219064" ref_strand="+" ref_description="SGN-E219064 [cLEL-11-K11](-)">
      <seq>aaagtgtattggaaaagcaactcataacaagattctgggaaatgacatagcctaccagtataactcctcactatggggactcacgtcgcttcctcattccaacgtttcactcgcttagcttatcgtagtttttgaaagcctgtatattggaagtgtgttgtatcgatataagattagtgtgcgcgctccagctgcatttcttgtgatgtacagattcaagaaagcaactcgtttattgtccttgtactgcttgtatgttggattagtactgcattttgtataattgaatccgtccgatatgtgattagttaatgctaggagagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="24875" stop="23960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24575" g_stop="24260" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="336"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E219064" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24575" e_stop="24260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGTATTGG-AAAGCAACTCATAACAAGATTCTGGGAAATGACATAGCCTACCAGTATAACTCCTCACTATGGGGACTCACGTCGCTTCCTCATTCCAACGTTTCACTCGCTTAGCTTATCGTAGTTTTTGAAAGCCTGTATATTGGAAGTGTGTTGTATCGATATAAGATTAGTGTGCGCGCTCCAGCTGCATTTCTTGTGATGTACAGATTCAAGAAAGCAACTCGTTTATTGTCCTTGTACTGCTTGTATGTTGGATTAGTACTGCATTTTGTAAATTTGAATTTGTTGGATATGTGATTAGTTAATGCTA</genome_strand>
        <mrna_strand>AAAGTGTATTGGAAAAGCAACTCATAACAAGATTCTGGGAAATGACATAGCCTACCAGTATAACTCCTCACTATGGGGACTCACGTCGCTTCCTCATTCCAACGTTTCACTCGCTTAGCTTATCGTAGTTTTTGAAAGCCTGTATATTGGAAGTGTGTTGTATCGATATAAGATTAGTGTGCGCGCTCCAGCTGCATTTCTTGTGATGTACAGATTCAAGAAAGCAACTCGTTTATTGTCCTTGTACTGCTTGTATGTTGGATTAGTACTGCATTTTGTATAATTGAATCCGTCCGATATGTGATTAGTTAATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219651" ref_strand="+" ref_description="SGN-E219651 [cLEL-11-K11](-)">
      <seq>ggcacgagactgaatcttctaaaaagtgtattggaaagcaactcataacaagattctgggaaatgacatagcctaccagtataactcctcactatggggactcacgtcgcttcctcattccaacgtttcactcgcttagcttatcgtagtttttgaaagcctgtatattggaagtgtgttgtatcgatataagattagtgtgcgcgctccagctgcatttcttgtgatgtacagattcaagaaagcaactcgtttattgtccttgtactgcttgtatgttggattagtactgcattttgtaaatttgaatttgttggatatgtgattagttaacgctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="24893" stop="23958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24590" g_stop="24266" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="332" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="357"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E219651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24590" e_stop="24266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGAATCTTCTAAAAAGTGTATTGGAAAGCAACTCATAACAAGATTCTGGGAAATGACATAGCCTACCAGTATAACTCCTCACTATGGGGACTCACGTCGCTTCCTCATTCCAACGTTTCACTCGCTTAGCTTATCGTAGTTTTTGAAAGCCTGTATATTGGAAGTGTGTTGTATCGATATAAGATTAGTGTGCGCGCTCCAGCTGCATTTCTTGTGATGTACAGATTCAAGAAAGCAACTCGTTTATTGTCCTTGTACTGCTTGTATGTTGGATTAGTACTGCATTTTGTAAATTTGAATTTGTTGGATATGTGATTAGTTA</genome_strand>
        <mrna_strand>GACTGAATCTTCTAAAAAGTGTATTGGAAAGCAACTCATAACAAGATTCTGGGAAATGACATAGCCTACCAGTATAACTCCTCACTATGGGGACTCACGTCGCTTCCTCATTCCAACGTTTCACTCGCTTAGCTTATCGTAGTTTTTGAAAGCCTGTATATTGGAAGTGTGTTGTATCGATATAAGATTAGTGTGCGCGCTCCAGCTGCATTTCTTGTGATGTACAGATTCAAGAAAGCAACTCGTTTATTGTCCTTGTACTGCTTGTATGTTGGATTAGTACTGCATTTTGTAAATTTGAATTTGTTGGATATGTGATTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343026" ref_strand="+" ref_description="SGN-E343026 [cTOF-11-M5]">
      <seq>tggccatgggggtactgatgcagcattatttgtgaggaataatattctcaagttcataatggaggacccctgttttcccatgtgtttagagaaggcactcaagaatgcttttctgaaagctgactatgcttttgccgacgatagttctattgacatatactctggcaccacagcattgacagctctaatgtttggaagaaacatgatcgttgctaatgcaggagattgtcgtgctgtgctagggaaacgaggtaaagccattgagttgtctaaggaccacaaaccaaatagcgcatctgaaagacatcgaatagaaaaacttggaggagtcatatatgacggatacttaaacggacagttatctatagcacgtgccttgggggattggcacatgaaaggcccaaaaggttctgcctaccccttgagtgcagagccggagttgcaggaaacattgttgaccgaggatgatgagttcctaatcatgggttgcgatggtctatgggatgttatgagcagccaatgtgctgttacgatggcccggaaagaactcatgctacataatgacccagaaagatgttcaagagaactggtaagggaagccctcaagcgcaacacatgtgataacttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="26227" stop="24376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25927" g_stop="25730" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25729" i_stop="25109" i_length="621">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25108" g_stop="24676" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="631" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E343026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25927" e_stop="25730"/>
          <exon e_start="25108" e_stop="24676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAGGTAACTAGATCTTCTGTTTCTTGTTTTCATATTTCTTGTCTAAATTATTTCTTAGAACAATGCAATATACTTGCTGAAGGGAAAAATAAGAACATTGGTTTTGTCTTTTATGTTTACTAAAAGCATGAAGGCAAATACACATATTTAGTTCCATTCATCTGGGCTATTTCTCCATGTGAAGCTCAATACGTATAACTGCTCTGGTTTCCATTTCATGTTGAAAGTGCAGATGCGATCATGCCGACATTTTGAACTATTACTCCCTCCTTTTCAATTTCTTTATGGTTTTGACTTTGACACAGAATTTGAGAAAGTCAACAAGACTTTTGAAACTTGTGGTCTTAAACTAAAGAATGTAGAATGTACCAAAATGGAAGGGACATTCCTTTTGAAACGGATTAAAAAGGGAAGTACGACAAATAAATTGAAACGGAAGGAGTAGAATAAGCTGAATTTGTTTTCATGAAATATTTTCTGAATGCATAGTCTGTTGTCTTCTGCTCCATGATCCACATTAACTGCTGTTGACAACATTCCTTATGTTTCTGATCGTTATGAGTATTTTATTCAAACAGGATTTGGTGCTGAATAGTCTGTAGTGTGATATGATTTGTTTTGCAGAAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTAGGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAAAGGCCCAAAAGGTTCTGCCTACCCCTTGAGTGCAGAGCCGGAGTTGCAGGAAACATTGTTGACCGAGGATGATGAGTTCCTAATCATGGGTTGCGATGGTCTATGGGATGTTATGAGCAGCCAATGTGCTGTTACGATGGCCCGGAAAGAACTCATGCTACATAATGACCCAGAAAGATGTTCAAGAGAACTGGTAAGGGAAGCCCTCAAGCGCAACACATGTGATAACTTAACA</genome_strand>
        <mrna_strand>TGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTAGGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAAAGGCCCAAAAGGTTCTGCCTACCCCTTGAGTGCAGAGCCGGAGTTGCAGGAAACATTGTTGACCGAGGATGATGAGTTCCTAATCATGGGTTGCGATGGTCTATGGGATGTTATGAGCAGCCAATGTGCTGTTACGATGGCCCGGAAAGAACTCATGCTACATAATGACCCAGAAAGATGTTCAAGAGAACTGGTAAGGGAAGCCCTCAAGCGCAACACATGTGATAACTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259885" ref_strand="+" ref_description="SGN-E259885 [cLEG-51-N24]">
      <seq>atcaaactttgaaccaatatttcgttctggaagttgtgctgagaaaggacccaaacagtacatggaggatgaacatatctgtatagatgatctaatcatacatgttaatgaaattgcaggttccacttcccctgcagcattttatggggtctttgatggccatgggggtactgatgcagcattatttgtgaggaataatattctcaagttcataatggaggacccctgttttcccatgtgtttagagaaggcactcaagaatgcttttctgaaagctgactatgcttttgccgacgatagttctattgacatatactctggcaccacagcattgacagctctaatgtttggaagaaacatgatcgttgctaatgcaggagattgtcgtgctgtgctanggaaacgaggtaaagccattgagttgtctaaggaccacaaaccaaatagcgcatctgaaagacatcgaatagaaaaacttggaggagtcatatatgacggatacttaaacggacagttatctatagcacgtgccttgggggattggcacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="27448" stop="24611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27148" g_stop="27001" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27000" i_stop="25936" i_length="1065">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25935" g_stop="25730" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="354" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25729" i_stop="25109" i_length="621">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25108" g_stop="24911" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="552" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E259885" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27148" e_stop="27001"/>
          <exon e_start="25935" e_stop="25730"/>
          <exon e_start="25108" e_stop="24911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGGGTTTGTAGCTTTTGCACTTCATTTGATTATGCATTTTTGCATTGTAGATAGAAATACCCATATAATGTGCTATGTGTAGTGATGTTTCACCCTAAATGAATTACTCTTTTGTGTTGGTTATGTTCCTCTCATTGAATAGCATGTGAAGCAATTCATTTCAGATTCCCCTCACTGAATCAATCAAAATCTGACAACGGGGAGTTCAAGGGGGCCTGTTGGCCTTTATTGTCTATAGTTAGTAAGATAATAAGTGAGAAACAAACTTCGTAAAATGGAAAAATGAATGGCGAAGGATAGATAGAGGTCTTAAGTGTACAAAACGAGATAGACAAGAATCAGGAACTGGTTTGGGCTTTTTGAGCGCTCAGCAGTATCAACTATCAAGTGAATGATGACGTAGAAGGAAATGCTGTATGGATTGCTCCTTAGAAGGCTTCATGGGATCTATGATGTTCTTCAAGTGTGCAACATGTCCTCCGTCCAAACTCGTTTTAAATTTTCCTAGTCCGTAAAAGCATCAAACCAACTCTGCAAGCTTTTCTGGGATATACTCCTAACATATTTAAATTACCAAAAGATTTATTCTTTTCGAAATGCAGTAGGCTTTTTGGATGCATATGCCTAGGGAAAAGTCAAACTATGAAGACCTATCTGCTCTTGACACTTTGCTGAAGTACCACTGAAGCCGAGGATTCCTGAAAAAAAAAAAGAAAATCGATAATGAATTCTAAAAGTGGCCTAGTTCAATTTAAGAAAGATAACGGCAACTCAAATTTTAGTGTGCATACAGGTGGTAATTTATTTAGGCTTCATGCAAAATTGTAATATTTGGGTAAATTTACTTTCTTTATGTTTGCTTATGCCAAATAACTCAGGAGTTAGAGTTGAGGTGTAGCTGATTGATTGGTTGCTTTGCTGCGTATCTCATGGATTGTTCCATAAATGATATGCACCTAGTTTTCTTTTTGTTTCTCGATTAAGTCGTGTCATCTGGTCCTTGCACCGTTACTTGTACCTCCATCATTGGTATGATTTAGTAATAACGCTGTTACTAATTCCTTACAGGTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAGGTAACTAGATCTTCTGTTTCTTGTTTTCATATTTCTTGTCTAAATTATTTCTTAGAACAATGCAATATACTTGCTGAAGGGAAAAATAAGAACATTGGTTTTGTCTTTTATGTTTACTAAAAGCATGAAGGCAAATACACATATTTAGTTCCATTCATCTGGGCTATTTCTCCATGTGAAGCTCAATACGTATAACTGCTCTGGTTTCCATTTCATGTTGAAAGTGCAGATGCGATCATGCCGACATTTTGAACTATTACTCCCTCCTTTTCAATTTCTTTATGGTTTTGACTTTGACACAGAATTTGAGAAAGTCAACAAGACTTTTGAAACTTGTGGTCTTAAACTAAAGAATGTAGAATGTACCAAAATGGAAGGGACATTCCTTTTGAAACGGATTAAAAAGGGAAGTACGACAAATAAATTGAAACGGAAGGAGTAGAATAAGCTGAATTTGTTTTCATGAAATATTTTCTGAATGCATAGTCTGTTGTCTTCTGCTCCATGATCCACATTAACTGCTGTTGACAACATTCCTTATGTTTCTGATCGTTATGAGTATTTTATTCAAACAGGATTTGGTGCTGAATAGTCTGTAGTGTGATATGATTTGTTTTGCAGAAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTAGGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAA</genome_strand>
        <mrna_strand>ATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTANGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366677" ref_strand="+" ref_description="SGN-E366677 [cLPT-17-C11]">
      <seq>cccctttacttcccaaaaaaggctaatcatctgtgacttccaccaaaatttcatcttttggtgtccgcttcaaatcattctgctttccgtggataagaatctctgaggctattgaatttatgctctgggaatgcatatggctgcctatacagatttttcaccaccatttgctatagtagaagggagttacagtaaggagaatacatctgctgttaaagatgaattacttgaggaatcaaatgaactaaagacgacaagtgataagccactacgagatccttctgttgtacagtattcagtgaactctactgcacttgttggagacactgatttagattttgaaataactgagaagggtttccgacacccttctgagggacaatcaaactttgaaccaatatttcgttctggaagttgtgctgagaaaggacccaaacagtacatggaggatgaacatatctgtatagatgatctaatcatacatgttaatgaaattgcaggttccacttcccctgcagcgttctatggggtctttgatggccatgggggtactgatgcagcattatttgtgaggaataatattctcaagttcataatggaggacccctgttttcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="29464" stop="25546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29164" g_stop="29083" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29082" i_stop="28462" i_length="621">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.162" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28461" g_stop="28210" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="334" r_length="252" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28209" i_stop="27196" i_length="1014">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27195" g_stop="27001" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="529" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27000" i_stop="25936" i_length="1065">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25935" g_stop="25846" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="619" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E366677" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29164" e_stop="29083"/>
          <exon e_start="28461" e_stop="28210"/>
          <exon e_start="27195" e_stop="27001"/>
          <exon e_start="25935" e_stop="25846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTGGTAATATAGATTCAACTTTTGATTATGAACTGAAGTTTGTTCATAAAGATCTATGTGCTAATTAGACTTATGGGTTACTGTTTTTGTTTGTTTTACTTAAGTTCCTACGGTTATTTTGCTTTGTGGGGTTGGTGAAATTTACTGAAATTATTGATCTTGCTTGGTTGTGGTGATTCTATGACAGAAAGGGGTTTCATTTCTGTTTATTTTGATTCTTGAATTGTTGCAATTTTAGAGCTTAGGGAGTTCACAAAGGTAGTCGAGGATATATCGGAAACAGCCTATATACCTTGTAGGATAAGATCTGTGTACACACTATCCTTACACCCCACTTGTGGGACTATTATGTTGTTGTTGGAGTCTAAAAGGATCTTTTTGGGTAGGGAAAGGGAAATTGGGGAGGGGATACTAGGTGGGGATCGATTAAAATGAACTGAGCTAGTAAAATTTCTTGTTTACAAGGGTCTTGAATTTGTTATCGAACCAAAGATTGAAGCTTTTTGTTTTTGTAGGACTGCTAAAGGCTTAACCTTGACAATTATTGTACTGCAAATTGTTCTCTCTCTCTTTTTGCCCTTTTACAAGTGATTGATTATCTTTTTTTGCATTTTTGGGGTCAAGCTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTAGTAAGTGGAAAGTGTTAAAGTTTGGTAGTGATCTTATCTCAGCATCTCGTTGCGTGTTTATATCCCTTATTGTGCTTGATAGTACTTTCTCCGTTCATTTTGTTTGTCTAGTTTTTACTTGGAAGTTCGCTCGGAATTTAAGGAAGTAAAGAAATTTTGAATTGTATAGTCTTAAACTAAAAGATGTATATAATGTGCCAGTATCCTTTAAGCTTGTTGTCTTAAACATGCATGCTATGTGGAAAGTTGAAATTTAAGAGTTGCTAAAAAAGGAAAGAGGCGTTCTTTTTTAAATGGATTAAAAGGGAATTAAGACAGACATATTGAAACTGAGGGAGTTCAGTTTTAGTGGGAATTGAGTTAGTGGTTAGATTTATGGAAGTCAAAGACAGTTCAATTAGATTCTTTGTTGTGCTTGATACTAACATTTAGAAAACAGTTTAGTTTTTAGCAGAAAAAACAATCTATGCGCAAGTAATTGCAGCTTTCGATTGGTGGTAGTAAACTAAATATGCATAAGTGATGAGGAAACGACAGATAGAATGTAGAATAAGAATACATGTATTAGTCTACGTGGATAAGCATATCTAAAGACAACTCGTTGCATTACATTCTACATGTCATTATTCATTGCATAACATTTCCTACAGTTTATTATTCATCGCAAAAATAGCCCATGCATTATAATCTTTACGTAACTAGTGAGAGAATCAAATGACTCCTAAGATCTAGATTGCATGAGTAAAGCAATTTATTAGTTGATCTGATTCTGCCTAAGAACGCAACATTTATGTTCCCCATGCCTTCCGGGTTTTTTTTCCTTCTTTTTTGGGTGGGGGTATTTTATTAAAGATCGAAGCTATAAAAGTTGTAGCAGTTAATCTCTTTATCTGCTAATAACTACATTAATTACTCCCCTTGAATTTTCTTCCTTTTCCATCCTTTTGATTTTTCAAACTTGTTTGTACCTTATTAAGGTCATGCAGCTAATATTATTTTTCTTACATCTACTAGGATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGGGTTTGTAGCTTTTGCACTTCATTTGATTATGCATTTTTGCATTGTAGATAGAAATACCCATATAATGTGCTATGTGTAGTGATGTTTCACCCTAAATGAATTACTCTTTTGTGTTGGTTATGTTCCTCTCATTGAATAGCATGTGAAGCAATTCATTTCAGATTCCCCTCACTGAATCAATCAAAATCTGACAACGGGGAGTTCAAGGGGGCCTGTTGGCCTTTATTGTCTATAGTTAGTAAGATAATAAGTGAGAAACAAACTTCGTAAAATGGAAAAATGAATGGCGAAGGATAGATAGAGGTCTTAAGTGTACAAAACGAGATAGACAAGAATCAGGAACTGGTTTGGGCTTTTTGAGCGCTCAGCAGTATCAACTATCAAGTGAATGATGACGTAGAAGGAAATGCTGTATGGATTGCTCCTTAGAAGGCTTCATGGGATCTATGATGTTCTTCAAGTGTGCAACATGTCCTCCGTCCAAACTCGTTTTAAATTTTCCTAGTCCGTAAAAGCATCAAACCAACTCTGCAAGCTTTTCTGGGATATACTCCTAACATATTTAAATTACCAAAAGATTTATTCTTTTCGAAATGCAGTAGGCTTTTTGGATGCATATGCCTAGGGAAAAGTCAAACTATGAAGACCTATCTGCTCTTGACACTTTGCTGAAGTACCACTGAAGCCGAGGATTCCTGAAAAAAAAAAAGAAAATCGATAATGAATTCTAAAAGTGGCCTAGTTCAATTTAAGAAAGATAACGGCAACTCAAATTTTAGTGTGCATACAGGTGGTAATTTATTTAGGCTTCATGCAAAATTGTAATATTTGGGTAAATTTACTTTCTTTATGTTTGCTTATGCCAAATAACTCAGGAGTTAGAGTTGAGGTGTAGCTGATTGATTGGTTGCTTTGCTGCGTATCTCATGGATTGTTCCATAAATGATATGCACCTAGTTTTCTTTTTGTTTCTCGATTAAGTCGTGTCATCTGGTCCTTGCACCGTTACTTGTACCTCCATCATTGGTATGATTTAGTAATAACGCTGTTACTAATTCCTTACAGGTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATG</genome_strand>
        <mrna_strand>CCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCCTATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAACTAAAGACGACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTTGGAGACACTGATTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGAAATAACTGAGAAGGGTTTCCGACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCGTTCTATGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307199" ref_strand="+" ref_description="SGN-E307199 [cLEY-15-J7]">
      <seq>tcaaatcattctgctttccgtggataagaatctctgaggctattgaatttatgctctgggaatgcatatggctgcatatacagatttttcaccaccatttgctatagtagaagggagttacagtaaggagaatacatctgctgttaaagatgaattacttgaggaatcaaatgaaataaagacaacaagtgataagccactacgagatccttctgttgtacagtattcagtgaactctactgcacttgtaggagacgctgatttagattttgaaataactgagaagggtttccaacacccttctgagggacaatcaaactttgaaccaatatttcgttctggaagttgtgctgagaaaggacccaaacagtacatggaggatgaacatatctgtatagatgatctaatcatacatgttaatgaaattgcaggttccacttcccctgcagcattttatggggtctttgatggccatgggggtactgatgcagcattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="28762" stop="25598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28461" g_stop="28210" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="265" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28209" i_stop="27196" i_length="1014">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27195" g_stop="27001" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="460" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27000" i_stop="25936" i_length="1065">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25935" g_stop="25898" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="498" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E307199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28461" e_stop="28210"/>
          <exon e_start="27195" e_stop="27001"/>
          <exon e_start="25935" e_stop="25898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTAGTAAGTGGAAAGTGTTAAAGTTTGGTAGTGATCTTATCTCAGCATCTCGTTGCGTGTTTATATCCCTTATTGTGCTTGATAGTACTTTCTCCGTTCATTTTGTTTGTCTAGTTTTTACTTGGAAGTTCGCTCGGAATTTAAGGAAGTAAAGAAATTTTGAATTGTATAGTCTTAAACTAAAAGATGTATATAATGTGCCAGTATCCTTTAAGCTTGTTGTCTTAAACATGCATGCTATGTGGAAAGTTGAAATTTAAGAGTTGCTAAAAAAGGAAAGAGGCGTTCTTTTTTAAATGGATTAAAAGGGAATTAAGACAGACATATTGAAACTGAGGGAGTTCAGTTTTAGTGGGAATTGAGTTAGTGGTTAGATTTATGGAAGTCAAAGACAGTTCAATTAGATTCTTTGTTGTGCTTGATACTAACATTTAGAAAACAGTTTAGTTTTTAGCAGAAAAAACAATCTATGCGCAAGTAATTGCAGCTTTCGATTGGTGGTAGTAAACTAAATATGCATAAGTGATGAGGAAACGACAGATAGAATGTAGAATAAGAATACATGTATTAGTCTACGTGGATAAGCATATCTAAAGACAACTCGTTGCATTACATTCTACATGTCATTATTCATTGCATAACATTTCCTACAGTTTATTATTCATCGCAAAAATAGCCCATGCATTATAATCTTTACGTAACTAGTGAGAGAATCAAATGACTCCTAAGATCTAGATTGCATGAGTAAAGCAATTTATTAGTTGATCTGATTCTGCCTAAGAACGCAACATTTATGTTCCCCATGCCTTCCGGGTTTTTTTTCCTTCTTTTTTGGGTGGGGGTATTTTATTAAAGATCGAAGCTATAAAAGTTGTAGCAGTTAATCTCTTTATCTGCTAATAACTACATTAATTACTCCCCTTGAATTTTCTTCCTTTTCCATCCTTTTGATTTTTCAAACTTGTTTGTACCTTATTAAGGTCATGCAGCTAATATTATTTTTCTTACATCTACTAGGATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGGGTTTGTAGCTTTTGCACTTCATTTGATTATGCATTTTTGCATTGTAGATAGAAATACCCATATAATGTGCTATGTGTAGTGATGTTTCACCCTAAATGAATTACTCTTTTGTGTTGGTTATGTTCCTCTCATTGAATAGCATGTGAAGCAATTCATTTCAGATTCCCCTCACTGAATCAATCAAAATCTGACAACGGGGAGTTCAAGGGGGCCTGTTGGCCTTTATTGTCTATAGTTAGTAAGATAATAAGTGAGAAACAAACTTCGTAAAATGGAAAAATGAATGGCGAAGGATAGATAGAGGTCTTAAGTGTACAAAACGAGATAGACAAGAATCAGGAACTGGTTTGGGCTTTTTGAGCGCTCAGCAGTATCAACTATCAAGTGAATGATGACGTAGAAGGAAATGCTGTATGGATTGCTCCTTAGAAGGCTTCATGGGATCTATGATGTTCTTCAAGTGTGCAACATGTCCTCCGTCCAAACTCGTTTTAAATTTTCCTAGTCCGTAAAAGCATCAAACCAACTCTGCAAGCTTTTCTGGGATATACTCCTAACATATTTAAATTACCAAAAGATTTATTCTTTTCGAAATGCAGTAGGCTTTTTGGATGCATATGCCTAGGGAAAAGTCAAACTATGAAGACCTATCTGCTCTTGACACTTTGCTGAAGTACCACTGAAGCCGAGGATTCCTGAAAAAAAAAAAGAAAATCGATAATGAATTCTAAAAGTGGCCTAGTTCAATTTAAGAAAGATAACGGCAACTCAAATTTTAGTGTGCATACAGGTGGTAATTTATTTAGGCTTCATGCAAAATTGTAATATTTGGGTAAATTTACTTTCTTTATGTTTGCTTATGCCAAATAACTCAGGAGTTAGAGTTGAGGTGTAGCTGATTGATTGGTTGCTTTGCTGCGTATCTCATGGATTGTTCCATAAATGATATGCACCTAGTTTTCTTTTTGTTTCTCGATTAAGTCGTGTCATCTGGTCCTTGCACCGTTACTTGTACCTCCATCATTGGTATGATTTAGTAATAACGCTGTTACTAATTCCTTACAGGTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATT</genome_strand>
        <mrna_strand>CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325928" ref_strand="+" ref_description="SGN-E325928 [cTOC-12-M18]">
      <seq>ttgtgcctttattttctcagttggatttagggtctccatttttagtaatttccattcttggtttcaccccctttacttcccaaaaaaggctaatcatctgtgacttccaccaaaatttcatcttttggtgtccgcttcaaatcattctgctttccgtggataagaatctctgaggctattgaatttatgctctgggaatgcatatggctgcatatacagatttttcaccaccatttgctatagtagaagggagttacagtaaggagaatacatctgctgttaaagatgaattacttgaggaatcaaatgaaataaagacaacaagtgataagccactacgagatccttctgttgtacagtattcagtgaactctactgcacttgtaggagacgctgatttagattttgaaataactgagaagggtttccaacacccttctgagggacaatcaaactttgaaccaatatttcgttctggaagttgtgctgagaaaggacccaaacagtacatggaggatgaacatatctgtatagatgatctaatcatacatgttaatgaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="29531" stop="26733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29231" g_stop="29083" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29082" i_stop="28462" i_length="621">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.162" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28461" g_stop="28210" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="401" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28209" i_stop="27196" i_length="1014">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27195" g_stop="27033" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="564" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E325928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29231" e_stop="29083"/>
          <exon e_start="28461" e_stop="28210"/>
          <exon e_start="27195" e_stop="27033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCCTTTATTTTCTCAGTTGGATTTAGGGTCTCCATTTTTAGTAATTTCCATTCTTGGTTTCACCCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTGGTAATATAGATTCAACTTTTGATTATGAACTGAAGTTTGTTCATAAAGATCTATGTGCTAATTAGACTTATGGGTTACTGTTTTTGTTTGTTTTACTTAAGTTCCTACGGTTATTTTGCTTTGTGGGGTTGGTGAAATTTACTGAAATTATTGATCTTGCTTGGTTGTGGTGATTCTATGACAGAAAGGGGTTTCATTTCTGTTTATTTTGATTCTTGAATTGTTGCAATTTTAGAGCTTAGGGAGTTCACAAAGGTAGTCGAGGATATATCGGAAACAGCCTATATACCTTGTAGGATAAGATCTGTGTACACACTATCCTTACACCCCACTTGTGGGACTATTATGTTGTTGTTGGAGTCTAAAAGGATCTTTTTGGGTAGGGAAAGGGAAATTGGGGAGGGGATACTAGGTGGGGATCGATTAAAATGAACTGAGCTAGTAAAATTTCTTGTTTACAAGGGTCTTGAATTTGTTATCGAACCAAAGATTGAAGCTTTTTGTTTTTGTAGGACTGCTAAAGGCTTAACCTTGACAATTATTGTACTGCAAATTGTTCTCTCTCTCTTTTTGCCCTTTTACAAGTGATTGATTATCTTTTTTTGCATTTTTGGGGTCAAGCTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTAGTAAGTGGAAAGTGTTAAAGTTTGGTAGTGATCTTATCTCAGCATCTCGTTGCGTGTTTATATCCCTTATTGTGCTTGATAGTACTTTCTCCGTTCATTTTGTTTGTCTAGTTTTTACTTGGAAGTTCGCTCGGAATTTAAGGAAGTAAAGAAATTTTGAATTGTATAGTCTTAAACTAAAAGATGTATATAATGTGCCAGTATCCTTTAAGCTTGTTGTCTTAAACATGCATGCTATGTGGAAAGTTGAAATTTAAGAGTTGCTAAAAAAGGAAAGAGGCGTTCTTTTTTAAATGGATTAAAAGGGAATTAAGACAGACATATTGAAACTGAGGGAGTTCAGTTTTAGTGGGAATTGAGTTAGTGGTTAGATTTATGGAAGTCAAAGACAGTTCAATTAGATTCTTTGTTGTGCTTGATACTAACATTTAGAAAACAGTTTAGTTTTTAGCAGAAAAAACAATCTATGCGCAAGTAATTGCAGCTTTCGATTGGTGGTAGTAAACTAAATATGCATAAGTGATGAGGAAACGACAGATAGAATGTAGAATAAGAATACATGTATTAGTCTACGTGGATAAGCATATCTAAAGACAACTCGTTGCATTACATTCTACATGTCATTATTCATTGCATAACATTTCCTACAGTTTATTATTCATCGCAAAAATAGCCCATGCATTATAATCTTTACGTAACTAGTGAGAGAATCAAATGACTCCTAAGATCTAGATTGCATGAGTAAAGCAATTTATTAGTTGATCTGATTCTGCCTAAGAACGCAACATTTATGTTCCCCATGCCTTCCGGGTTTTTTTTCCTTCTTTTTTGGGTGGGGGTATTTTATTAAAGATCGAAGCTATAAAAGTTGTAGCAGTTAATCTCTTTATCTGCTAATAACTACATTAATTACTCCCCTTGAATTTTCTTCCTTTTCCATCCTTTTGATTTTTCAAACTTGTTTGTACCTTATTAAGGTCATGCAGCTAATATTATTTTTCTTACATCTACTAGGATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTG</genome_strand>
        <mrna_strand>TTGTGCCTTTATTTTCTCAGTTGGATTTAGGGTCTCCATTTTTAGTAATTTCCATTCTTGGTTTCACCCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272099" ref_strand="+" ref_description="SGN-E272099 [cLEN-4-E19]">
      <seq>tcatctgtgacttccaccaaaatttcatcttttggtgtccgcttcaaatcattctgctttccgtggataagaatctctgaggctattgaatttatgctctgggaatgcatatggctgcatatacagatttttcaccaccatttgctatagtagaagggagttacagtaaggagaatacatctgctgttaaagatgaattacttgaggaatcaaatgaaataaagacaacaagtgataagccactacgagagccttctgttgtacagtattcagtgaactctactgcacttgtaggagacgctgatttagattttgaaatcactgagaagggtttccaacacccttctgagggacaatcaaactttgaaccaatatttcgttctggaagttgtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="29438" stop="26808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29138" g_stop="29083" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29082" i_stop="28462" i_length="621">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.162" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28461" g_stop="28210" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="308" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28209" i_stop="27196" i_length="1014">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27195" g_stop="27108" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="396" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E272099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29138" e_stop="29083"/>
          <exon e_start="28461" e_stop="28210"/>
          <exon e_start="27195" e_stop="27108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTGGTAATATAGATTCAACTTTTGATTATGAACTGAAGTTTGTTCATAAAGATCTATGTGCTAATTAGACTTATGGGTTACTGTTTTTGTTTGTTTTACTTAAGTTCCTACGGTTATTTTGCTTTGTGGGGTTGGTGAAATTTACTGAAATTATTGATCTTGCTTGGTTGTGGTGATTCTATGACAGAAAGGGGTTTCATTTCTGTTTATTTTGATTCTTGAATTGTTGCAATTTTAGAGCTTAGGGAGTTCACAAAGGTAGTCGAGGATATATCGGAAACAGCCTATATACCTTGTAGGATAAGATCTGTGTACACACTATCCTTACACCCCACTTGTGGGACTATTATGTTGTTGTTGGAGTCTAAAAGGATCTTTTTGGGTAGGGAAAGGGAAATTGGGGAGGGGATACTAGGTGGGGATCGATTAAAATGAACTGAGCTAGTAAAATTTCTTGTTTACAAGGGTCTTGAATTTGTTATCGAACCAAAGATTGAAGCTTTTTGTTTTTGTAGGACTGCTAAAGGCTTAACCTTGACAATTATTGTACTGCAAATTGTTCTCTCTCTCTTTTTGCCCTTTTACAAGTGATTGATTATCTTTTTTTGCATTTTTGGGGTCAAGCTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTAGTAAGTGGAAAGTGTTAAAGTTTGGTAGTGATCTTATCTCAGCATCTCGTTGCGTGTTTATATCCCTTATTGTGCTTGATAGTACTTTCTCCGTTCATTTTGTTTGTCTAGTTTTTACTTGGAAGTTCGCTCGGAATTTAAGGAAGTAAAGAAATTTTGAATTGTATAGTCTTAAACTAAAAGATGTATATAATGTGCCAGTATCCTTTAAGCTTGTTGTCTTAAACATGCATGCTATGTGGAAAGTTGAAATTTAAGAGTTGCTAAAAAAGGAAAGAGGCGTTCTTTTTTAAATGGATTAAAAGGGAATTAAGACAGACATATTGAAACTGAGGGAGTTCAGTTTTAGTGGGAATTGAGTTAGTGGTTAGATTTATGGAAGTCAAAGACAGTTCAATTAGATTCTTTGTTGTGCTTGATACTAACATTTAGAAAACAGTTTAGTTTTTAGCAGAAAAAACAATCTATGCGCAAGTAATTGCAGCTTTCGATTGGTGGTAGTAAACTAAATATGCATAAGTGATGAGGAAACGACAGATAGAATGTAGAATAAGAATACATGTATTAGTCTACGTGGATAAGCATATCTAAAGACAACTCGTTGCATTACATTCTACATGTCATTATTCATTGCATAACATTTCCTACAGTTTATTATTCATCGCAAAAATAGCCCATGCATTATAATCTTTACGTAACTAGTGAGAGAATCAAATGACTCCTAAGATCTAGATTGCATGAGTAAAGCAATTTATTAGTTGATCTGATTCTGCCTAAGAACGCAACATTTATGTTCCCCATGCCTTCCGGGTTTTTTTTCCTTCTTTTTTGGGTGGGGGTATTTTATTAAAGATCGAAGCTATAAAAGTTGTAGCAGTTAATCTCTTTATCTGCTAATAACTACATTAATTACTCCCCTTGAATTTTCTTCCTTTTCCATCCTTTTGATTTTTCAAACTTGTTTGTACCTTATTAAGGTCATGCAGCTAATATTATTTTTCTTACATCTACTAGGATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTG</genome_strand>
        <mrna_strand>TCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGAGCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGAAATCACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299818" ref_strand="-" ref_description="SGN-E299818 [cLEW-1-K9]">
      <seq>gaaatattggttcaaagtttgattgtccctcagaagggtgttggaaacccttctcagttatttcaaaatctaaatcagcgtctcctacaagtgcagtagagttcactgaatactgtacaacagaaggatctcgtagtggcttatcacttgttgtctttatttcatttgattcctcaagtaattcatctttaacagcagatgtattctccttactgtaactcccttctactatagcaaatggtggtgaaaaatctgtatatgcagccatatgcattcccagagcataaattcaatagcctcagagattcttatccacggaaagcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="26826" stop="28762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27126" g_stop="27204" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27205" i_stop="28217" i_length="1013">
            <donor d_prob="0.452" d_score="0.88"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28218" g_stop="28466" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="327" r_length="249" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E299818" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299818" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27126" e_stop="27204"/>
          <exon e_start="28218" e_stop="28466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATTGGTTCAAAGTTTGATTGTCCCTCAGAAGGGTGTTGGAAACCCTTCTCAGTTATTTCAAAATCCTAGTAGATGTAAGAAAAATAATATTAGCTGCATGACCTTAATAAGGTACAAACAAGTTTGAAAAATCAAAAGGATGGAAAAGGAAGAAAATTCAAGGGGAGTAATTAATGTAGTTATTAGCAGATAAAGAGATTAACTGCTACAACTTTTATAGCTTCGATCTTTAATAAAATACCCCCACCCAAAAAAGAAGGAAAAAAAACCCGGAAGGCATGGGGAACATAAATGTTGCGTTCTTAGGCAGAATCAGATCAACTAATAAATTGCTTTACTCATGCAATCTAGATCTTAGGAGTCATTTGATTCTCTCACTAGTTACGTAAAGATTATAATGCATGGGCTATTTTTGCGATGAATAATAAACTGTAGGAAATGTTATGCAATGAATAATGACATGTAGAATGTAATGCAACGAGTTGTCTTTAGATATGCTTATCCACGTAGACTAATACATGTATTCTTATTCTACATTCTATCTGTCGTTTCCTCATCACTTATGCATATTTAGTTTACTACCACCAATCGAAAGCTGCAATTACTTGCGCATAGATTGTTTTTTCTGCTAAAAACTAAACTGTTTTCTAAATGTTAGTATCAAGCACAACAAAGAATCTAATTGAACTGTCTTTGACTTCCATAAATCTAACCACTAACTCAATTCCCACTAAAACTGAACTCCCTCAGTTTCAATATGTCTGTCTTAATTCCCTTTTAATCCATTTAAAAAAGAACGCCTCTTTCCTTTTTTAGCAACTCTTAAATTTCAACTTTCCACATAGCATGCATGTTTAAGACAACAAGCTTAAAGGATACTGGCACATTATATACATCTTTTAGTTTAAGACTATACAATTCAAAATTTCTTTACTTCCTTAAATTCCGAGCGAACTTCCAAGTAAAAACTAGACAAACAAAATGAACGGAGAAAGTACTATCAAGCACAATAAGGGATATAAACACGCAACGAGATGCTGAGATAAGATCACTACCAAACTTTAACACTTTCCACTTACTAAATCAGCGTCTCCTACAAGTGCAGTAGAGTTCACTGAATACTGTACAACAGAAGGATCTCGTAGTGGCTTATCACTTGTTGTCTTTATTTCATTTGATTCCTCAAGTAATTCATCTTTAACAGCAGATGTATTCTCCTTACTGTAACTCCCTTCTACTATAGCAAATGGTGGTGAAAAATCTGTATATGCAGCCATATGCATTCCCAGAGCATAAATTCAATAGCCTCAGAGATTCTTATCCACGGAAAGCTTGA</genome_strand>
        <mrna_strand>GAAATATTGGTTCAAAGTTTGATTGTCCCTCAGAAGGGTGTTGGAAACCCTTCTCAGTTATTTCAAAATC-TAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCCTACAAGTGCAGTAGAGTTCACTGAATACTGTACAACAGAAGGATCTCGTAGTGGCTTATCACTTGTTGTCTTTATTTCATTTGATTCCTCAAGTAATTCATCTTTAACAGCAGATGTATTCTCCTTACTGTAACTCCCTTCTACTATAGCAAATGGTGGTGAAAAATCTGTATATGCAGCCATATGCATTCCCAGAGCATAAATTCAATAGCCTCAGAGATTCTTATCCACGGAAAGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336086" ref_strand="+" ref_description="SGN-E336086 [cTOE-12-E24]">
      <seq>tgacttccaccaaaatttcatcttttggtgtccgcttcaaatcattctgctttccgtggataagaatctctgaggctattgaatttatgctctgggaatgcatatggctgcatatacagatttttcaccaccatttgctatagtagaaggatacagtaggaaatacattgtgtaaataattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="29431" stop="28020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29131" g_stop="29083" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29082" i_stop="28462" i_length="621">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.162" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28461" g_stop="28320" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="184" r_length="135" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E336086" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.038" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29131" e_stop="29083"/>
          <exon e_start="28461" e_stop="28320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTGGTAATATAGATTCAACTTTTGATTATGAACTGAAGTTTGTTCATAAAGATCTATGTGCTAATTAGACTTATGGGTTACTGTTTTTGTTTGTTTTACTTAAGTTCCTACGGTTATTTTGCTTTGTGGGGTTGGTGAAATTTACTGAAATTATTGATCTTGCTTGGTTGTGGTGATTCTATGACAGAAAGGGGTTTCATTTCTGTTTATTTTGATTCTTGAATTGTTGCAATTTTAGAGCTTAGGGAGTTCACAAAGGTAGTCGAGGATATATCGGAAACAGCCTATATACCTTGTAGGATAAGATCTGTGTACACACTATCCTTACACCCCACTTGTGGGACTATTATGTTGTTGTTGGAGTCTAAAAGGATCTTTTTGGGTAGGGAAAGGGAAATTGGGGAGGGGATACTAGGTGGGGATCGATTAAAATGAACTGAGCTAGTAAAATTTCTTGTTTACAAGGGTCTTGAATTTGTTATCGAACCAAAGATTGAAGCTTTTTGTTTTTGTAGGACTGCTAAAGGCTTAACCTTGACAATTATTGTACTGCAAATTGTTCTCTCTCTCTTTTTGCCCTTTTACAAGTGATTGATTATCTTTTTTTGCATTTTTGGGGTCAAGCTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAAT</genome_strand>
        <mrna_strand>TGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAA-GGA--TACAGT-AGGA-AATACAT-TG-TGTAAATAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323664" ref_strand="+" ref_description="SGN-E323664 [cTOC-2-M13]">
      <seq>gtatagtatgctttggagtgtgttcagacgggttgagtaggaatggcacttcaaggcctgctgttgtgagtgttggagctatatttacatttgactctacaattggaagagctgccaagattgcaattcaggaggctgtgaaagatgttaattccaactctagcatcctccaaggaaccaaacttgttgtgcagttgcaaaattccaattgcagtgggtttcttggcatggttggagccttgaaatttatggagactgatgttgttgcagtaataggcccacaatcttctgtagttgcccataccatatcccatgttgccaatgaacttcaagttcctttcttatcatttgctgctactgatcccacactctcctctcttcagttcccttattttcttaggacaactcaaagtgatctatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="32477" stop="33814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32777" g_stop="33013" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33014" i_stop="33328" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33329" g_stop="33514" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="423" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E323664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32777" e_stop="33013"/>
          <exon e_start="33329" e_stop="33514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAGTATGCTTTGGAGTGTGTTCAGACGGGTTGAGTAGGAATGGCACTTCAAGGCCTGCTGTTGTGAGTGTTGGAGCTATATTTACATTTGACTCTACAATTGGAAGAGCTGCCAAGATTGCAATTCAGGAGGCTGTGAAAGATGTTAATTCCAACTCTAGCATCCTCCAAGGAACCAAACTTGTTGTGCAGTTGCAAAATTCCAATTGCAGTGGGTTTCTTGGCATGGTTGGAGGTACTTTGTTCACTGTTCATTTCCTTTAATATCCATTACACTGCCTTAGATGCTGGAAAATTTAGAATCAGGAAATAACAAGAGGAAACATAGTTAGTTCCTCCTTTAAGGAAACCAGTGATGCTTGGAAGTCATTGCTAATGTCAACACTCATTGTAGTTCATCATTCTCAGTTAATATAGATAGCTGATGGTTTGTGCTATTAGAATATGTGGCATTCATTCAAAATTTGATTCACATAGCCTAGAAAAGTTTCCAATTCTCTCATTTAAGGGTACATTTGAATATCTAGACTAACACTTCTTTTATTTGCAGCCTTGAAATTTATGGAGACTGATGTTGTTGCAGTAATAGGCCCACAATCTTCTGTAGTTGCCCATACCATATCCCATGTTGCCAATGAACTTCAAGTTCCTTTCTTATCATTTGCTGCTACTGATCCCACACTCTCCTCTCTTCAGTTCCCTTATTTTCTTAGGACAACTCAAAGTGATCTATACC</genome_strand>
        <mrna_strand>GTATAGTATGCTTTGGAGTGTGTTCAGACGGGTTGAGTAGGAATGGCACTTCAAGGCCTGCTGTTGTGAGTGTTGGAGCTATATTTACATTTGACTCTACAATTGGAAGAGCTGCCAAGATTGCAATTCAGGAGGCTGTGAAAGATGTTAATTCCAACTCTAGCATCCTCCAAGGAACCAAACTTGTTGTGCAGTTGCAAAATTCCAATTGCAGTGGGTTTCTTGGCATGGTTGGAG...........................................................................................................................................................................................................................................................................................................................CCTTGAAATTTATGGAGACTGATGTTGTTGCAGTAATAGGCCCACAATCTTCTGTAGTTGCCCATACCATATCCCATGTTGCCAATGAACTTCAAGTTCCTTTCTTATCATTTGCTGCTACTGATCCCACACTCTCCTCTCTTCAGTTCCCTTATTTTCTTAGGACAACTCAAAGTGATCTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245414" ref_strand="+" ref_description="SGN-E245414 [cLEF-53-H24]">
      <seq>tcatatggctctttgtcgttttgataataaattcaagttacacagcaagtttgacctccatcctcactgtgcaacaattatattctcctattaaaggtattgagagcttgaaagaaactgatgaaccaattgggtaccaagttggttcttttgcagaaaggtatttggaggaaattggtataccaaaatccagacttgttccccttgggtcaccggaagaatatgctacagcacttcaacgtggtcctgcaaacgggggtgtagctgcagtggtggatgaaagaccatacgttgaacttttcctgtcaaaccagtgcaaattcaggattgtaggtcaagagttcaccaaaagtgggtggggttttgtaagtttctctattcctacagtttttttcttttttcctcattctgtgtgccctcctgccttttctatttccttaatcctaattctgtaagtacaccttggtttattttgttgactaaaatcttgatgtcctggacatcttggtaggattttgtagcatatcactaagcacacttctatttcaagccgagtatttgtgtaaaaatcattgacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="35959" stop="37138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36259" g_stop="36838" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E245414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36259" e_stop="36838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGGCTCTTTGTCGTTTTGATAATAAATTCAAGTTACACAGCAAGTTTGACCTCCATCCTCACTGTGCAACAATTATATTCTCCTATTAAAGGTATTGAGAGCTTGAAAGAAACTGATGAACCAATTGGGTACCAAGTTGGTTCTTTTGCAGAAAGGTATTTGGAGGAAATTGGTATACCAAAATCCAGACTTGTTCCCCTTGGGTCACCGGAAGAATATGCTACAGCACTTCAACGTGGTCCTGCAAACGGGGGTGTAGCTGCAGTGGTGGATGAAAGACCATACGTTGAACTTTTCCTGTCAAACCAGTGCAAATTCAGGATTGTAGGTCAAGAGTTCACCAAAAGTGGGTGGGGTTTTGTAAGTTTCTCTATTCCTACAGTTTTTTTCTTTTTTCCTCATTCTGTGTGCCCTCCTGCCTTTTCTATTTCCTTAATCCTAATTCTGTAAGTACACCTTGGTTTATTTTGTTGACTAAAATCTTGATGTCCTGGACATCTTGGTAGGATTTTGTAGCATATCACTAAGCACACTTCTATTTCAAGCCGAGTATTTGTGTAAAAATCATTGACGTC</genome_strand>
        <mrna_strand>TCATATGGCTCTTTGTCGTTTTGATAATAAATTCAAGTTACACAGCAAGTTTGACCTCCATCCTCACTGTGCAACAATTATATTCTCCTATTAAAGGTATTGAGAGCTTGAAAGAAACTGATGAACCAATTGGGTACCAAGTTGGTTCTTTTGCAGAAAGGTATTTGGAGGAAATTGGTATACCAAAATCCAGACTTGTTCCCCTTGGGTCACCGGAAGAATATGCTACAGCACTTCAACGTGGTCCTGCAAACGGGGGTGTAGCTGCAGTGGTGGATGAAAGACCATACGTTGAACTTTTCCTGTCAAACCAGTGCAAATTCAGGATTGTAGGTCAAGAGTTCACCAAAAGTGGGTGGGGTTTTGTAAGTTTCTCTATTCCTACAGTTTTTTTCTTTTTTCCTCATTCTGTGTGCCCTCCTGCCTTTTCTATTTCCTTAATCCTAATTCTGTAAGTACACCTTGGTTTATTTTGTTGACTAAAATCTTGATGTCCTGGACATCTTGGTAGGATTTTGTAGCATATCACTAAGCACACTTCTATTTCAAGCCGAGTATTTGTGTAAAAATCATTGACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366320" ref_strand="+" ref_description="SGN-E366320 [cLPT-1-C21](-)">
      <seq>cagaaatcatgatgttttgctctgtcattttgtgcttgttattctgattcaggcatttcctcgggactctccgttggctgtcgacttgtcaactgcaattttaacactatcagagaatggagacctccagcggatacatgacaagtggttagcaagaagtgcatgcagtttagacaatgctgagcttgaatcagatcgccttcacttgagaagcttttcaggcctctttcttatatgtgggattgcatgctttattgctctcctagtatatttcatccagattctgcgtaaattttgccggacttccaacgctgcagtagattcggatggtcagaatactacttcacgttccaaacgtcttcaaactttgctgtcaattattgatgagaaatcagatagaggcagcaagcgaaggaaaatcgacagatcagtttctgatgacaacatagaaaatgacttgggaagggattccaggtggatagaaacacaggttccttgtcaaaatgaaattcattagttcaattatgccagcttacatttcttatagggttcttaccaagtttcaattttgacaacatagaattgtttataagattcagctgtcaactgtatattagcacaatttttacataatcaatatcatttagtagcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="36600" stop="37856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36900" g_stop="37564" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E366320" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36900" e_stop="37564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCATGATGTTTTTCTCTGTCATTTTGTGCTTGTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTCTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACCAAAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTTAACTGTATATTAGCACAATTTTTACACAATCAATATCATTTAGTAGCTTCAACTCTGATA</genome_strand>
        <mrna_strand>CAGAAATCATGATGTTTTGCTCTGTCATTTTGTGCTTGTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCTGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAGTATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTAGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAGATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTGTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACC-AAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTCAACTGTATATTAGCACAATTTTTACATAATCAATATCATTTAGTAGCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548965" ref_strand="+" ref_description="SGN-E548965 [TUS-66-A22]">
      <seq>gttattctgattcaggcatttcctcgggactctccgttggcagtcgacttgtcaactgcaattttaacactatcagagaatggagacctccagcggatacatgacaagtggttagcaagaagtgcatgcagtttagacaatgctgagcttgaatcagatcgccttcacttgagaagcttttcaggcctctttcttatatgtgggattgcatgctttattgctctcctaatatatttcatccagattctgcgtaaattttgccggacttccaacgctgcagttgattcggatggtcagaatactacttcacgttccaaacgtcttcaaactttgctgtcaattattgatgagaaatcaaatagaggcagcaagcgaaggaaaatcgacagatcagtttctgatgacaacatagaaaatgacttgggaagggattccaggtggatagaaacacaggttccttctcaaaatgaaattcattagttcaattatgccagcttacatttcttatagggttcttaccaaagtttcaattttgacaacatagaattgtttataagattcagctgttaactgtatattagcacaatttttacacaatcaatatcatttagtagcttcaactctgatactttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="36637" stop="37871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36937" g_stop="37571" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E548965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36937" e_stop="37571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTCTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACCAAAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTTAACTGTATATTAGCACAATTTTTACACAATCAATATCATTTAGTAGCTTCAACTCTGATACTTTTTC</genome_strand>
        <mrna_strand>GTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTCTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACCAAAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTTAACTGTATATTAGCACAATTTTTACACAATCAATATCATTTAGTAGCTTCAACTCTGATACTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305221" ref_strand="+" ref_description="SGN-E305221 [cLEX-15-I15]">
      <seq>ttattctgattcaggcatttcctcgggactctccgttggcagtcgacttgtcaactgcaattttaacactatcagagaatggagacctccagcggatacatgacaagtggttagcaagaagtgcatgcagtttagacaatgctgagcttgaatcagatcgccttcacttgagaagcttttcaggcctctttcttatatgtgggattgcatgctttattgctctcctaatatatttcatccagattctgcgtaaattttgccggacttccaacgctgcagttgattcggatggtcagaatactacttcacgttccaaacgtcttcaaactttgctgtcaattattgatgagaaatcaaatagaggcagcaagcgaaggaaaatcgacagatcagtttctgatgacaacatagaaaatgacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="36638" stop="37661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36938" g_stop="37361" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E305221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36938" e_stop="37361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGG</genome_strand>
        <mrna_strand>TTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396694" ref_strand="+" ref_description="SGN-E396694 [TUS-43-F21](-)">
      <seq>ccaaatccagagctaaaggccaaaagcagtagaggtattgcattcatcctttcttttggaattctgagatgcgactctcattcctccgagacgccagtgatagagtggaattagaggatagagaagatggatctgaacttttgggagcactggaaagtgttaagaccgtggcattgggtggtctgtggaatgataaaatggatagtgcaattatcaatgacattggtcgctacaggcgttacaaatacgatagtgtccgcgatttgttgcgtgttatcagaaataagttaaaccattacagagagctttcaaaggaaatacagggaattcttggacaggttcctgaaggttttgagagctatttctccaccaggtttcctagacttgtaattgaggtctacaaagtacttcatacctattgtttagaggaagatatctttcaaaaatacttcaaaggcaatcaaaattagctcaatactatctacatattaaacctatgtacatataaaggatttataattataataattatgaataagtggaaagcaaagaattaaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="38640" stop="37512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38496" g_stop="38480" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38479" i_stop="38340" i_length="140">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38339" g_stop="37790" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="569" r_length="552" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E396694" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38496" e_stop="38480"/>
          <exon e_start="38339" e_stop="37790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCAGAGCTAAGGTAATGACATCATGGTTTTGAAATTTTTGGTCCTCTACATAGTATTGGTTCTCTGATATTATAAATTTGTAAGTTTTGTGTCATTGATATTATATTTGTACTTCCACTGATGGGGGCGTATGCCTTTCTGTTATCCCTTAGGCCAAAAGCAGTAGAGGTATTGCA-TCATCCTTTCTTTTGGAATTCTGAGATGCGACTCTCATTCCTCCGAGACGCCAGTGATAGAGTGGAATTAGAGGATAGAGAAGATGGATCTGAACTTTTGGGAGCACTGGAAAGTGTTAAGACCGTGGCATTGGGTGGTCTGTGGAATGATAAAATGGATAGTGCATTTATCAATGACATTGGTCGCTACAGGCGTTACAAATACGATAGTGTCCGCGATTTGTTGCGTGTTATCAGAAATAAGTTAAACCATTACAGAGAGCTTTCAAAGGAAATACAGGGAATTCTTGGACAGGTTCCTGAAGGTTTTGAGAGCTATTTCTCCACCAGGTTTCCTAGACTTGTAATTGAGGTCTACAAAGTACTTCATACCTATTGTTTAGAGGAAGATATCTTTCAAAAATACTTCAAAGGCAATCAAAATTAGCTCAATACTATCTACATATTAAACCTATGTACATAT-TGTAATTTATAATTATAATAATTATGAATAAGTGGAAAGCTTCAAATTAAAATAAGCATCAG</genome_strand>
        <mrna_strand>CCAAATCCAGAGCTAAA............................................................................................................................................GGCCAAAAGCAGTAGAGGTATTGCATTCATCCTTTCTTTTGGAATTCTGAGATGCGACTCTCATTCCTCCGAGACGCCAGTGATAGAGTGGAATTAGAGGATAGAGAAGATGGATCTGAACTTTTGGGAGCACTGGAAAGTGTTAAGACCGTGGCATTGGGTGGTCTGTGGAATGATAAAATGGATAGTGCAATTATCAATGACATTGGTCGCTACAGGCGTTACAAATACGATAGTGTCCGCGATTTGTTGCGTGTTATCAGAAATAAGTTAAACCATTACAGAGAGCTTTCAAAGGAAATACAGGGAATTCTTGGACAGGTTCCTGAAGGTTTTGAGAGCTATTTCTCCACCAGGTTTCCTAGACTTGTAATTGAGGTCTACAAAGTACTTCATACCTATTGTTTAGAGGAAGATATCTTTCAAAAATACTTCAAAGGCAATCAAAATTAGCTCAATACTATCTACATATTAAACCTATGTACATATAAAGGATTTATAATTATAATAATTATGAATAAGTGGAAAGCAAAGAATTAAAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396695" ref_strand="+" ref_description="SGN-E396695 [TUS-43-F21]">
      <seq>atcttatcagtcacctgctcctaccaaaaacaattttctggagatgaccaggatgccggttgtttaagtgactgcactgtaaaagttcaatggaaatctggagacaaggatgacttcccgttatggaagcccagtggatatccttcagctcacctgttaaaattgatgagagatatggttcatggccttgctcatttgcatgaactgggaattgtacaccgtgacttgaagcctcagaatattcttatagtaaaagagagatctgtaagtgcaaagctttcagatatgggtatcagcaagcatcttgcaggggacatgtcttcattaaccaaaaattccactggctctgggagttcaggttggcaagcacctgagcaacttcgtcatgaacggcagacacgtgctgtggatttattcagtttaggctgtgtactctttttctgcataaccgggggaaaacatccgtatggggatagttttgaacgtgatgtaaatatagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="40966" stop="38267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40666" g_stop="40497" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40496" i_stop="39268" i_length="1229">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39267" g_stop="39095" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="343" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39094" i_stop="38727" i_length="368">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38726" g_stop="38567" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="503" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E396695" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40666" e_stop="40497"/>
          <exon e_start="39267" e_stop="39095"/>
          <exon e_start="38726" e_stop="38567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAGGTTGGTTTATTGTTATTATCGGTTTCTGATTTACTTTTATTAATCTGAATTCGTTCATTGTGTGGAGACTCACTTCAATGTCAAGTGTTCATTCTCATTGATCAGTCAATAACAAGTGCATGATCTATGGCTTTCTCAGCAAGATGACTCTAAACTGATAGTCACTCTCGTTAAACTGGGTAATCGGTACAATTTTCATTTGACATAACCATGCCTGGGAAACAGCTTCTCTTGGATTGTCCGACTCTGGGGCATGTCTAACTGGACTTCTTGAATGTTTATCCAACTGTTAATTCATATTTTACACGGTTCACGTCAATTTTTTCTTGAAGAATTGATCGAACAATGTGACATAGGAAATGTTCATGGTGACTTGAATCTTTTATATTATTGGTGTTGGATACAGAAATAGGTAAGTATATATTGAAGCTGGTTATTCTATAGCTTTTACTTCAGAAATTAAAAAATCATGTAGGGGTCCCAATTCGAACTGGAATAGACCATTAAAGTTAACATTGAAATAGTTCTTGTATATATGTACAGAATTATTTTGATGATAAATCTTTACCCCCCCACCCCCCAAAAAAATAAAATTATGTTGACAATTGTTAAATCTTTATCATTTTGCTTAGTGAACTGAACTCCTAGTGGTAACTCATGCTTTTTTTCATCAAATTACGCTAGAAATGTGTTCTAAAAAAGTAATTATTTATAGTGGATGATGTCAGGGCAGTTTTATCCTAATGATCCTTGTCACACCTGGTGAATTGAAGATGGAATATTTGTTACTACATGTAACATTGTGATTTACAGACAATTCAATGACGACTCTCAGGCAAATGAATCACAGCCTTTGGAACATTTAAGCTGAGAATTCTCACATCTATATTGCTAAAGCATCTAATAGGCTGTCATGGGAATTTCAGTATTCCCATGAAGCCTTTGAAGTTCATCTCATCTTTTTGTTAGAGTACTATATTATTTTGATCTCACAAAATATAAAGGCAATTAGCCTCTGAATCATTTGTTGAATCACATTTTATTTATTTGTTTGCCCTTTTGAACGAATACATACTAATTTTTCACACACATTTCAGGATGTGGACATTAGATTTTTTATGTATTTTACGTGCCTTTCGTTTCACCATTATTTAGTTACAGCTCTTTCAGACGTATTTGAGAGGCATTCAGAATTAACAATTAAGCCCTTTTATGATTGGTAATGGCAGAGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAGGGGACATGTCTTCATTAACCAAAAATTCCACTGGTAAGCCTTAGTTCAGAACTTGCATTTTTTTCTCTTGTGACAATTGACATTTTCAAGTGCATTACCCAGCCCCAATGCTACCTTATTTACTCTGAGTGGAGGGTGAGGGAGGCCTGCTTTTGTTGCTTTTTATTTTTCAATGTAATTAATACAAGTCCCATTCACTTCCTTTTTGTCCCAAATTTTTTGAAAAACTTCTATTCATTTCAATATGGAGTTGATAAATCTATATAGTGATTAGTGAAGCCATGCATTGGAGGCAGGCATTTCATTTGAAAATAGGGATATCTTGAAACTTTCTTCTGCATATCTATTTGCAACTATGTACGTGCATGAATGTCACTTATCCCGTGTTACAATATCTGTAGGCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACGGCAGACACGTGCTGTGGATTTATTCAGTTTAGGCTGTGTACTCTTTTTCTGCATAACCGGGGGAAAACATCCGTATGGGGATAGTTTTGAACGTGATGTAAATATAGTTAA</genome_strand>
        <mrna_strand>ATCTTATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAGGGGACATGTCTTCATTAACCAAAAATTCCACTG................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACGGCAGACACGTGCTGTGGATTTATTCAGTTTAGGCTGTGTACTCTTTTTCTGCATAACCGGGGGAAAACATCCGTATGGGGATAGTTTTGAACGTGATGTAAATATAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205524" ref_strand="+" ref_description="SGN-E205524 [cLEC-28-P5]">
      <seq>tatcatcagtcacctgctcctaccaaaaacaattttctggagatgaccaggatgccggttgtttaagtgactgcactgtaaaagttcaatggaaatctggagacaaggatgacttcccgttatggaagcccagtggatatccttcagctcacctgttaaaattgatgagagatatggttcatggccttgctcatttgcatgaactgggaattgtacaccgtgacttgaagcctcagaatattcttatagtaaaagagagatctgtaagtgcaaagctttcagatatgggtatcagcaagcatcttgcaagggacatgtcttcattaaccaaaaattccactggctctgggagttcaggttggcaagcacctgagcaacttcgtcatgaacagcagacacgtgctgtggatttattcagtttacgctgtgtactctttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="40965" stop="38327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40497" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40496" i_stop="39268" i_length="1229">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39267" g_stop="39095" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="342" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39094" i_stop="38727" i_length="368">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38726" g_stop="38627" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="442" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E205524" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40497"/>
          <exon e_start="39267" e_stop="39095"/>
          <exon e_start="38726" e_stop="38627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAGGTTGGTTTATTGTTATTATCGGTTTCTGATTTACTTTTATTAATCTGAATTCGTTCATTGTGTGGAGACTCACTTCAATGTCAAGTGTTCATTCTCATTGATCAGTCAATAACAAGTGCATGATCTATGGCTTTCTCAGCAAGATGACTCTAAACTGATAGTCACTCTCGTTAAACTGGGTAATCGGTACAATTTTCATTTGACATAACCATGCCTGGGAAACAGCTTCTCTTGGATTGTCCGACTCTGGGGCATGTCTAACTGGACTTCTTGAATGTTTATCCAACTGTTAATTCATATTTTACACGGTTCACGTCAATTTTTTCTTGAAGAATTGATCGAACAATGTGACATAGGAAATGTTCATGGTGACTTGAATCTTTTATATTATTGGTGTTGGATACAGAAATAGGTAAGTATATATTGAAGCTGGTTATTCTATAGCTTTTACTTCAGAAATTAAAAAATCATGTAGGGGTCCCAATTCGAACTGGAATAGACCATTAAAGTTAACATTGAAATAGTTCTTGTATATATGTACAGAATTATTTTGATGATAAATCTTTACCCCCCCACCCCCCAAAAAAATAAAATTATGTTGACAATTGTTAAATCTTTATCATTTTGCTTAGTGAACTGAACTCCTAGTGGTAACTCATGCTTTTTTTCATCAAATTACGCTAGAAATGTGTTCTAAAAAAGTAATTATTTATAGTGGATGATGTCAGGGCAGTTTTATCCTAATGATCCTTGTCACACCTGGTGAATTGAAGATGGAATATTTGTTACTACATGTAACATTGTGATTTACAGACAATTCAATGACGACTCTCAGGCAAATGAATCACAGCCTTTGGAACATTTAAGCTGAGAATTCTCACATCTATATTGCTAAAGCATCTAATAGGCTGTCATGGGAATTTCAGTATTCCCATGAAGCCTTTGAAGTTCATCTCATCTTTTTGTTAGAGTACTATATTATTTTGATCTCACAAAATATAAAGGCAATTAGCCTCTGAATCATTTGTTGAATCACATTTTATTTATTTGTTTGCCCTTTTGAACGAATACATACTAATTTTTCACACACATTTCAGGATGTGGACATTAGATTTTTTATGTATTTTACGTGCCTTTCGTTTCACCATTATTTAGTTACAGCTCTTTCAGACGTATTTGAGAGGCATTCAGAATTAACAATTAAGCCCTTTTATGATTGGTAATGGCAGAGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAGGGGACATGTCTTCATTAACCAAAAATTCCACTGGTAAGCCTTAGTTCAGAACTTGCATTTTTTTCTCTTGTGACAATTGACATTTTCAAGTGCATTACCCAGCCCCAATGCTACCTTATTTACTCTGAGTGGAGGGTGAGGGAGGCCTGCTTTTGTTGCTTTTTATTTTTCAATGTAATTAATACAAGTCCCATTCACTTCCTTTTTGTCCCAAATTTTTTGAAAAACTTCTATTCATTTCAATATGGAGTTGATAAATCTATATAGTGATTAGTGAAGCCATGCATTGGAGGCAGGCATTTCATTTGAAAATAGGGATATCTTGAAACTTTCTTCTGCATATCTATTTGCAACTATGTACGTGCATGAATGTCACTTATCCCGTGTTACAATATCTGTAGGCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACGGCAGACACGTGCTGTGGATTTATTCAGTTTAGGCTGTGTACTCTTTTTCTG</genome_strand>
        <mrna_strand>TATCATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAAGGGACATGTCTTCATTAACCAAAAATTCCACTG................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACAGCAGACACGTGCTGTGGATTTATTCAGTTTACGCTGTGTACTCTTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746571" ref_strand="+" ref_description="SGN-E746571 [GI|47104179]">
      <seq>gttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgccaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttggtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaatttgatgatctcaattctgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49464" stop="45990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49164" g_stop="49054" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="219" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="381" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="549" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="710" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="772" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="822" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="1229" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46596" g_stop="46295" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1230" r_stop="1531" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1534" polyA_stop="1551"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E746571" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1531</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49164" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</genome_strand>
        <mrna_strand>GTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCCAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTGGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344911" ref_strand="+" ref_description="SGN-E344911 [cTOF-21-D16]">
      <seq>tgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaatttgatgatctcaattctgtnnnanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47169" stop="45993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46869" g_stop="46672" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46295" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="500" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="521"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E344911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46869" e_stop="46672"/>
          <exon e_start="46596" e_stop="46295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</genome_strand>
        <mrna_strand>TGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234182" ref_strand="+" ref_description="SGN-E234182 [cLEL-8-E24](-)">
      <seq>agccaaagagttgtggacttggctcatctagaagcaagcaaatggccaggtgttgcagcaccagaaagtgaagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgtaataatttgagaccaccggaggtttggtaaccaccaggttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaatttgatgataacaaaactgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46898" stop="45990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46598" g_stop="46295" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E234182" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46598" e_stop="46295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</genome_strand>
        <mrna_strand>AGCCAAAGAGTTGTGGACTTGGCTCATCTAGAAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGAAAGTGAAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTAATAATTTGAG-ACCACCGGAGGTTTGGTAACCACCAGGTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATAACAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225142" ref_strand="+" ref_description="SGN-E225142 [cLEL-17-C13](-)">
      <seq>gggcacgaggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaatttgatgataacaattctgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46907" stop="45990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46596" g_stop="46295" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="318" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E225142" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46596" e_stop="46295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</genome_strand>
        <mrna_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATAACAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225540" ref_strand="+" ref_description="SGN-E225540 [cLEL-17-C13](-)">
      <seq>gggcacgaggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaatttgatgctctcaattctgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46907" stop="45990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46596" g_stop="46295" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="318" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E225540" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46596" e_stop="46295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</genome_strand>
        <mrna_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGCTCTCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234110" ref_strand="+" ref_description="SGN-E234110 [cLEL-8-E24](-)">
      <seq>gggcacgaggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaatttgatgatctcaattctgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46907" stop="45990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46596" g_stop="46295" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="318" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E234110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46596" e_stop="46295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</genome_strand>
        <mrna_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735485" ref_strand="+" ref_description="SGN-E735485 [LC01DC01]">
      <seq>acagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46899" stop="46013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46675" g_stop="46672" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46304" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="297" r_length="293" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E735485" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46675" e_stop="46672"/>
          <exon e_start="46596" e_stop="46304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGAT</genome_strand>
        <mrna_strand>ACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735531" ref_strand="+" ref_description="SGN-E735531 [LC02AA10]">
      <seq>actgccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46899" stop="46013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46675" g_stop="46672" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46304" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="297" r_length="293" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E735531" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46675" e_stop="46672"/>
          <exon e_start="46596" e_stop="46304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGAT</genome_strand>
        <mrna_strand>ACTG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735731" ref_strand="+" ref_description="SGN-E735731 [LC02DC01]">
      <seq>acagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46899" stop="46013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46675" g_stop="46672" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46304" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="297" r_length="293" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E735731" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46675" e_stop="46672"/>
          <exon e_start="46596" e_stop="46304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGAT</genome_strand>
        <mrna_strand>ACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740815" ref_strand="+" ref_description="SGN-E740815 [LC23AB02]">
      <seq>ccatccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="46899" stop="46013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46596" g_stop="46306" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="295" r_length="291" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E740815" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46596" e_stop="46306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATG</genome_strand>
        <mrna_strand>CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734604" ref_strand="+" ref_description="SGN-E734604 [LB13AD10]">
      <seq>attcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47151" stop="46013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46851" g_stop="46672" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46314" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="463" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="479"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E734604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46851" e_stop="46672"/>
          <exon e_start="46596" e_stop="46314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAA</genome_strand>
        <mrna_strand>ATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293652" ref_strand="+" ref_description="SGN-E293652 [cLET-21-E3]">
      <seq>caaggggaagctgaatggcattgttctcctagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47265" stop="46039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46965" g_stop="46672" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46329" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="562" r_length="268" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E293652" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46965" e_stop="46672"/>
          <exon e_start="46596" e_stop="46329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAAT</genome_strand>
        <mrna_strand>CAAGGGGAAGCTGAATGGCATTGTTCTCCTAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738238" ref_strand="+" ref_description="SGN-E738238 [LC12DF03]">
      <seq>gccaaggcagtgtctttagtgctgctgctctcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47404" stop="46039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47205" g_stop="47184" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="52" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="459" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46596" g_stop="46342" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="714" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="731"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E738238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47205" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</genome_strand>
        <mrna_strand>TCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738820" ref_strand="+" ref_description="SGN-E738820 [LC15AC11]">
      <seq>gccaaggcagtgtctttagtgctgctgctctcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47404" stop="46039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47205" g_stop="47184" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="52" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="459" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46596" g_stop="46342" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="714" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="731"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E738820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47205" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</genome_strand>
        <mrna_strand>TCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740998" ref_strand="+" ref_description="SGN-E740998 [LC23DD01]">
      <seq>gccaaggcagtgtctttagtgctgctgctctcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47404" stop="46039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47205" g_stop="47184" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="52" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="459" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46596" g_stop="46342" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="714" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="732"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E740998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47205" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</genome_strand>
        <mrna_strand>TCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578061" ref_strand="-" ref_description="SGN-E578061 [LE08DE03]">
      <seq>taacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47223" stop="46039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46923" g_stop="46672" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46342" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="507" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="530"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E578061" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578061" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46923" e_stop="46672"/>
          <exon e_start="46596" e_stop="46342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</genome_strand>
        <mrna_strand>TAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225815" ref_strand="+" ref_description="SGN-E225815 [cLEL-17-C14](-)">
      <seq>aaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47123" stop="46039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46823" g_stop="46672" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46342" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="407" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="427"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E225815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46823" e_stop="46672"/>
          <exon e_start="46596" e_stop="46342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</genome_strand>
        <mrna_strand>AAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732467" ref_strand="+" ref_description="SGN-E732467 [LB02BA06]">
      <seq>gcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47672" stop="46056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47372" g_stop="47315" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="108" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="515" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46596" g_stop="46356" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="756" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E732467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47372" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCG</genome_strand>
        <mrna_strand>GCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702908" ref_strand="+" ref_description="SGN-E702908 [FA20AB07]">
      <seq>ggtattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaaatgcaagtctatgaaataagacatttttgttataattttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47923" stop="46084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="170" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="232" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="282" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="689" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46596" g_stop="46384" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="904" r_length="215" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E702908" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGG-AATGCAAAGTCTATG-AATAAGACATTTTTGTTATAA-TTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCA</genome_strand>
        <mrna_strand>GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAAATGC-AAGTCTATGAAATAAGACATTTTTGTTATAATTTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716296" ref_strand="+" ref_description="SGN-E716296 [FB16CF06]">
      <seq>ctttctgcaccaaccagaggagctgactttcccacctatgttgttggagtgaacgatcgatactactctcatgagattgctaacatcataagctatgcctcttgcgccactaactgcttggctccatttgtgatagtcatggatgaaaagcttggaattgtgaaggggacgatgacaacaactctctcgtacaccggacatcataggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccatctactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggaattgctctccgagatgccaacacctagcgacgcagctcgttgaccttgttgtcaacgacgagaagaaaaattacagctgacgatgtgaatgcatcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtctcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcacggtcggtgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47848" stop="46140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47552" g_stop="47461" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="154" r_length="62" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="204" r_length="50" r_score="0.880"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="612" r_length="408" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46596" g_stop="46440" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="769" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E716296" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47552" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCA-GTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAG-TGCCAACACCTAACGTCTCAG-TCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAA</genome_strand>
        <mrna_strand>CTTTCTGCACCAACCAGAGGAGCTGACTTTCCCACCTATGTTGTTGGAGTGAACGATCGATACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CTATGCCTCTTGCGCCACTAACTGCTTGGCTCCATTTGTGATAGTCATGGATGAAAAGCTTG.................................................................................GAATTGTGAAGGGGACGATGACAACAACTCTCTCGTACACCGGACATCAT.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCATCTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGAATTGCTCTCCGAGATGCCAACACCTAGCGACGCAGCTCGTTGACCTTGTTGTCAACGACGAGAAGAAA--AATTACAGCTGACGATGTGAATGCATCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTCTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCACGGTCGGTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725747" ref_strand="+" ref_description="SGN-E725747 [LA05CC04]">
      <seq>atttcctccgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttggtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcgccaggaagtggagacccattggatgagttctgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47374" stop="46203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47079" g_stop="46672" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46596" g_stop="46503" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="501" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E725747" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47079" e_stop="46672"/>
          <exon e_start="46596" e_stop="46503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAG</genome_strand>
        <mrna_strand>ATTTCCTC-CGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTGGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCGCCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705889" ref_strand="+" ref_description="SGN-E705889 [FA28BG02]">
      <seq>gggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataatcaatgcctcttgcaccactaactgcttggctccatttgtgaaagacatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcataggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcaacattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgatgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcatcattcagaaaggctgctgatggtccactgaaaggcatattatatgtgtgtgatgcccctcttgattcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatgatcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgactgctgatacagccaaagagttgtggacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="48328" stop="46277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48028" g_stop="47976" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="215" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="277" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="327" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.903" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="734" r_length="407" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46596" g_stop="46577" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="754" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E705889" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48028" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGC-ACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGG</genome_strand>
        <mrna_strand>GGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCAACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAT....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGACATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAT.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAACATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGATGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCATCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTATATGTGTGTGATGCCCCTCTTGATTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGATCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGACTGCTGATACAG...........................................................................CCAAAGAGTTGTGGACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725864" ref_strand="+" ref_description="SGN-E725864 [LA08CC04]">
      <seq>attctctccgatgcttcacaccgtgacttaaggagagcgacagcagcagcattgaacattgtaccaaccagtactggtgcagcccaggcagtgtctttggtgctacctcatctcaaggggaagctgaatggcattgctctatgagtgccaacacctaacgtttcagacggtgaccttgttgtcaacgtcgacaagaacggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattacatgtgtgtgatgcccctcttgtgtcaactgacttccgatgctctgacgtttcatccaccatcgactactacttgaccatggtcatgggagatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47373" stop="46415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47078" g_stop="46715" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E725864" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47078" e_stop="46715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATA</genome_strand>
        <mrna_strand>ATTCTCTCCGATGCTTCACACCGTGACTTAAGGAGAGCGACAGCAGCAGCATTGAACATTGTACCAACCAGTACTGGTGCAGCCCAGGCAGTGTCTTTGGTGCTACCTCATCTCAAGGGGAAGCTGAATGGCATTGCTCTATGAGTGCCAACACCTAACGTTTCAGACGGTGACCTTGTTGTCAACGTCGACAAGAACGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTACATGTGTGTGATGCCCCTCTTGTGTCAACTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTACTACTTGACCATGGTCATGGGAGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293029" ref_strand="+" ref_description="SGN-E293029 [cLET-12-C15]">
      <seq>cagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgccaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttggtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="47890" stop="46464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47590" g_stop="47461" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="192" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="242" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47078" g_stop="46764" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="557" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E293029" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47590" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGAC</genome_strand>
        <mrna_strand>CAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCCAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTGGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316411" ref_strand="+" ref_description="SGN-E316411 [cTOA-25-J3]">
      <seq>tggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcacctcaaggggaagctgaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="48297" stop="46647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47997" g_stop="47976" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="183" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="295" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47078" g_stop="46947" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="427" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E316411" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47997" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGC</genome_strand>
        <mrna_strand>TGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCACCTCAAGGGGAAGCTGAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287921" ref_strand="+" ref_description="SGN-E287921 [cLES-19-P7]">
      <seq>gaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccacgtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="48409" stop="46697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48109" g_stop="47976" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="295" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="357" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="407" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47078" g_stop="46997" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="489" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E287921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48109" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAG</genome_strand>
        <mrna_strand>GAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCACGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707306" ref_strand="+" ref_description="SGN-E707306 [FA32CE08]">
      <seq>atttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctgagatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49469" stop="46713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49169" g_stop="49054" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="224" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="386" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="554" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="715" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="777" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="827" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47078" g_stop="47013" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="893" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E707306" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49169" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="47013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCA</genome_strand>
        <mrna_strand>ATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGAGATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702934" ref_strand="+" ref_description="SGN-E702934 [FA20AD10]">
      <seq>gcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49405" stop="46715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49105" g_stop="49054" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="160" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="322" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="490" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="651" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="713" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="763" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47078" g_stop="47015" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="827" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E702934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49105" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="47015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCC</genome_strand>
        <mrna_strand>GCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702368" ref_strand="+" ref_description="SGN-E702368 [FA18CB03]">
      <seq>cttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49433" stop="46748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49133" g_stop="49054" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="188" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="350" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="518" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="679" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="741" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="791" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47078" g_stop="47048" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="822" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E702368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49133" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="47048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAA</genome_strand>
        <mrna_strand>CTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737688" ref_strand="+" ref_description="SGN-E737688 [LC10DE02]">
      <seq>ggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49453" stop="46757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49153" g_stop="49054" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="208" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="370" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="538" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="699" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="761" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="811" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47078" g_stop="47057" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="833" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E737688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49153" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="47057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACC</genome_strand>
        <mrna_strand>GGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731411" ref_strand="+" ref_description="SGN-E731411 [LA27AB08]">
      <seq>ctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49448" stop="46763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49148" g_stop="49054" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="203" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="365" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="533" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="694" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="756" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="806" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47078" g_stop="47063" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="822" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E731411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49148" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="47063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTT</genome_strand>
        <mrna_strand>CTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736653" ref_strand="+" ref_description="SGN-E736653 [LC06CE05]">
      <seq>gctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaggggtacaatgaacacaactcactcttacaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49484" stop="46892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49184" g_stop="49054" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="239" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="401" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="569" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="730" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="792" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47192" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="834" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E736653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49184" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCG</genome_strand>
        <mrna_strand>GCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAGGGGTACAATGAACACAACTCACTCTTACACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736196" ref_strand="+" ref_description="SGN-E736196 [LC04CH04]">
      <seq>gctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49484" stop="46893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49184" g_stop="49054" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="239" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="401" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="569" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="730" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="792" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47193" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="833" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E736196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49184" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACC</genome_strand>
        <mrna_strand>GCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731832" ref_strand="+" ref_description="SGN-E731832 [LA28BC05]">
      <seq>gccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49458" stop="46893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49158" g_stop="49054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="213" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="375" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="543" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="704" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="766" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47193" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="807" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E731832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49158" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACC</genome_strand>
        <mrna_strand>GCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729786" ref_strand="+" ref_description="SGN-E729786 [LA22AD08]">
      <seq>aaaagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49494" stop="47023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49194" g_stop="49054" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="249" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="411" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="579" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="740" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47323" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="794" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E729786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49194" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGA</genome_strand>
        <mrna_strand>AAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721484" ref_strand="+" ref_description="SGN-E721484 [FC14AC04]">
      <seq>ggccgattgaagatcatttagttgccctaaaggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcgtctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgccaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49455" stop="47024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49184" g_stop="49054" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="239" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="401" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="569" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="730" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47324" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="783" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E721484" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49184" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATG</genome_strand>
        <mrna_strand>GGCCGATTGAAGATCATTTAGTTGCCCTAAAGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCGTCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCCAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709207" ref_strand="+" ref_description="SGN-E709207 [FA51AA11]">
      <seq>ccatatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49476" stop="47024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49176" g_stop="49054" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="231" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="393" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="561" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="722" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47324" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="775" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E709207" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49176" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATG</genome_strand>
        <mrna_strand>CCATATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719558" ref_strand="+" ref_description="SGN-E719558 [FC08AH07]">
      <seq>cggccgaattgatggtgggaacaaaccctttaaaaaaccatatataccaaaaaagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgccaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49536" stop="47025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49233" g_stop="49054" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="191" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="299" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="461" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="629" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="790" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47325" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="842" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E719558" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49233" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGAT</genome_strand>
        <mrna_strand>ATGGTGGGAACAAACCCTTTAAAAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCCAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721836" ref_strand="+" ref_description="SGN-E721836 [FC15BG08]">
      <seq>gggcgattggcggccaatcggccgaattgggtgggaaaaaccatattttaaaccatatataccaaaaaagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgccaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49536" stop="47025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49231" g_stop="49054" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="206" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="314" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="476" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="644" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="805" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47325" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="857" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E721836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49231" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGAT</genome_strand>
        <mrna_strand>GGTGGGAA-AAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCCAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334332" ref_strand="+" ref_description="SGN-E334332 [cTOD-21-O20]">
      <seq>ctcgtgccgctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49448" stop="47025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49148" g_stop="49054" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="203" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="365" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="533" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="694" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47325" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="746" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E334332" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49148" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGAT</genome_strand>
        <mrna_strand>CTCGTGCCGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704512" ref_strand="+" ref_description="SGN-E704512 [FA24CA06]">
      <seq>accatatataccaaaaaagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49508" stop="47029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49208" g_stop="49054" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="263" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="425" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="593" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="754" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47329" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="802" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E704512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49208" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCAT</genome_strand>
        <mrna_strand>ACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737138" ref_strand="+" ref_description="SGN-E737138 [LC08CE02]">
      <seq>cctttggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49454" stop="47043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49158" g_stop="49054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="213" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="375" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="543" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="704" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47343" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="738" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E737138" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49158" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCA</genome_strand>
        <mrna_strand>CCTTTGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721757" ref_strand="+" ref_description="SGN-E721757 [FC15AG10]">
      <seq>ggtgggaacaaaccatattttaaaccatatataccaaaaaagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaaaatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgccaacatcataagcaatgcctcttgcaccactaactgcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49531" stop="47047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49231" g_stop="49054" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="286" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="448" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="616" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="777" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47347" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="807" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E721757" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49231" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGC</genome_strand>
        <mrna_strand>GGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAAATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCCAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346252" ref_strand="+" ref_description="SGN-E346252 [cTOF-23-M10]">
      <seq>tggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaatgttgctatcaacagttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgctgtggctgtcaatgacagtggcggtgctcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatattggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgctattgagggaactggagtgtttgttgatggtccaggtgcacggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcagaaggtgctgacattccaacctatgctgntggagtgaacgatcaagactactctcatgagattgcttacatcataagcaatgcctcttgcaccactaactgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49454" stop="47049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49154" g_stop="49054" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="209" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="372" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="540" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="701" r_length="161" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47349" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="729" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E346252" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49154" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTG-TCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTG</genome_strand>
        <mrna_strand>TGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAATGTTGCTATCAACAGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGCTGTGGCTGTCAATGACAGTGGCGGTGCTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATATTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGCTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGAGTGTTTGTTGATGGTCCAGGTGCACGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAGAAGGTGCTGACATTCCAACCTATGCTGNTGGAGTGAACGATCAAGACTACTCTCATGAGATTGCTTACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334703" ref_strand="+" ref_description="SGN-E334703 [cTOD-23-H18]">
      <seq>cagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccangtgcagggaagcacatccaagctggtgcccagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagatttgctacatcataagcaatgcctcttgcaccactaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49442" stop="47054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49142" g_stop="49054" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="197" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="359" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="527" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="688" r_length="161" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47354" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="711" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E334703" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49142" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACT</genome_strand>
        <mrna_strand>CAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCANGTGCAGGGAAGCACATCCAAGCTGGTGCCCAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTTGCTACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348808" ref_strand="+" ref_description="SGN-E348808 [cTOF-29-D13]">
      <seq>tggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgcttgttgatggtccaggtgcaggtaagcacatccaagctggtgccaagaaagttatcatcactgcaccagaaaaaggtgctgacattccaccctatgttgntggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49454" stop="47161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49154" g_stop="49054" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="209" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="371" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="539" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="700" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47370" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="707" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E348808" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49154" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCC</genome_strand>
        <mrna_strand>TGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGCTTGTTGATGGTCCAGGTGCAGGTAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGAAAAAGGTGCTGACATTCCACCCTATGTTGNTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728057" ref_strand="+" ref_description="SGN-E728057 [LA16CC11]">
      <seq>gtccttacaaaccatattttaaaccatatataccaaaaaagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49524" stop="47161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49230" g_stop="49054" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="285" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="447" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="615" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="776" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E728057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49230" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG</genome_strand>
        <mrna_strand>GTCCTTACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332036" ref_strand="+" ref_description="SGN-E332036 [cTOD-16-L2]">
      <seq>atgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgntggagtgaacgagncagactactctcatgagattgctaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49445" stop="47167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49145" g_stop="49054" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="200" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="362" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="530" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47467" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="685" r_length="155" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E332036" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49145" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACAT</genome_strand>
        <mrna_strand>ATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGNTGGAGTGAACGAGNCAGACTACTCTCATGAGATTGCTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729012" ref_strand="+" ref_description="SGN-E729012 [LA19CG06]">
      <seq>cagccatggcttnctcatgccagctttggcttcttcacgaattcctacaagcacaagggcttccttccaataagaactcctactcattnccccacacaatgtttnatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgacttttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcgccagcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49460" stop="47235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49160" g_stop="49054" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="221" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="383" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="551" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47535" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="638" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E729012" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49160" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCATGGCTT-CTCATG-CAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAA-GGCTTCCTTCCAATAAGAACTCCTACTCATT-CCCCACACAATGTTT-ATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGAC-TTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAA</genome_strand>
        <mrna_strand>CAGCCATGGCTTNCTCATGCCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGGCTTCCTTCCAATAAGAACTCCTACTCATTNCCCCACACAATGTTTNATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCGCCAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320391" ref_strand="+" ref_description="SGN-E320391 [cTOB-22-I20]">
      <seq>tggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49454" stop="47686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49154" g_stop="49054" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="209" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="371" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47986" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="529" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E320391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49154" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACAT</genome_strand>
        <mrna_strand>TGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725577" ref_strand="+" ref_description="SGN-E725577 [LA04AE03]">
      <seq>gcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcanggtagtttctagcagggatcccctcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49452" stop="47713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49152" g_stop="49054" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="207" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="369" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="48013" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="500" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E725577" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49152" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="48013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCT</genome_strand>
        <mrna_strand>GCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCANGGTAGTTTCTAGCAGGGATCCCCTCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725578" ref_strand="+" ref_description="SGN-E725578 [LA04AE04]">
      <seq>gcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggnatatgaaaccattagtgttgatggaaagcacatcaaggtagtttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49452" stop="47731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49152" g_stop="49054" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="207" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="369" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="48031" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="482" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E725578" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49152" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="48031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAG</genome_strand>
        <mrna_strand>GCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGNATATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286021" ref_strand="+" ref_description="SGN-E286021 [cLES-13-N22]">
      <seq>tctcatgcagttttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgctgatggaaagcacatcaaggtagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49449" stop="47735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49149" g_stop="49054" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="204" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="366" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="48035" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="475" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E286021" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49149" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="48035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTT</genome_strand>
        <mrna_strand>TCTCATGCAGTTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGCTGATGGAAAGCACATCAAGGTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318526" ref_strand="+" ref_description="SGN-E318526 [cTOB-10-K20]">
      <seq>acgaattcctacaagcacaaggctttcttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagaacaagtggatgtgtgactttttccaacagagagacttctttctttgatggtgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggctttggtagaattggtaggaatttaactccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaaagacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaataatggataatgaaaccattagagttgatggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49426" stop="47750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49126" g_stop="49054" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="181" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="344" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="48050" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="438" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E318526" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49126" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="48050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTT-CCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGC</genome_strand>
        <mrna_strand>ACGAATTCCTACAAGCACAAGGCTTTCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGAACAAGTGGATGTGTGACTTTTTCCAACAGAGAGACTTCTTTCTTTGATGGTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGCTTTGGTAGAATTGGTAGGAATTTAACTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAAAGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAATGGATAATGAAACCATTAGAGTTGATGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330797" ref_strand="+" ref_description="SGN-E330797 [cTOD-10-E14]">
      <seq>aagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattccttacaagcaccaagggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaaccagagagtcttctttctttgatgttgtctctgcaccaactcactccaaagactacaggatcagccccggctaagggagaaacctgttgctaaattgaaggttgctatcaaccggttttggtagaattggtaggaatttcctccgatgcctggcatggtcgcaaagacctcacaccttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaaccattcaaagctgatgtcaaaatagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49492" stop="47779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49192" g_stop="49054" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="252" r_length="110" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="418" r_length="166" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="48079" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="484" r_length="66" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E330797" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49192" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="48079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCC-TACAAGCA-CAA-GGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAA-CAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCA-CAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAA-CTGTTGCTAAATTGAAGGTTGCTATCAA-CGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATG-CTGGCATGGTCGCAAAGA-CTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAA-CATTCAAAGCTGATGTCAAAATAGTGGA</genome_strand>
        <mrna_strand>AAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTTACAAGCACCAAGGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACCAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACCAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACCTGTTGCTAAATTGAAGGTTGCTATCAACCGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCCTGGCATGGTCGCAAAGACCTCACACCTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACCATTCAAAGCTGATGTCAAAATAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312770" ref_strand="+" ref_description="SGN-E312770 [cTOA-8-P11]">
      <seq>taccaaaaaagaagtagctttcctcaagatcatttaggggcatccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49500" stop="47782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49200" g_stop="49054" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="255" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="417" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="48082" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="479" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E312770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49200" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="48082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGT</genome_strand>
        <mrna_strand>TACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGGGGCATCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740989" ref_strand="+" ref_description="SGN-E740989 [LC23DB01]">
      <seq>aagcacaaggcttccttccataagaactcctactcattccccacccatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcaaccccggctaagggagaaactgttgctaaattgaaggatgctatcaacggttatggtagaattggtaggaatttcctccaatgctggcatggtcacaaatactcactacttgatgttgtggttgtctatgacagtggcaccgtcaagaacgcatctcacttgctaaattatagattcaatgctgggaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49414" stop="47803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49114" g_stop="49054" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="167" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="329" r_length="162" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="48103" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="371" r_length="42" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E740989" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49114" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="48103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTAT-GATTCAATGCTGGGAACATT</genome_strand>
        <mrna_strand>AAGCACAAGGCTTCCTTCC-ATAAGAACTCCTACTCATTCCCCAC-CCATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAACCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGATGCTATCAACGGTTATGGTAGAATTGGTAGGAATTTCCTCCAATGCTGGCATGGTCACAAATACTCACTACTTGATGTTGTGGTTGTCTATGACAGTGGCACCGTCAAGAAC................................................................................................GCATCTCACTTGCTAAATTATAGATTCAATGCTGGGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291254" ref_strand="+" ref_description="SGN-E291254 [cLET-2-D18]">
      <seq>ttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacagggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtatctgaatattgtggtctaagatcaagtggatgtgtgactttttgcaacagagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49463" stop="48503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49163" g_stop="49054" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48803" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="178" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E291254" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49163" e_stop="49054"/>
          <exon e_start="48870" e_stop="48803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTC</genome_strand>
        <mrna_strand>TTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAGGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTATCTGAATATTGTGGTCTAAGATCAAGTGGATGTGTGACTTTTTGCAACAGAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713884" ref_strand="+" ref_description="SGN-E713884 [FB09DG03]">
      <seq>gaggcactatccaaatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53506" stop="49579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53210" g_stop="53112" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="217" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="320" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="407" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49879" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="719" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49583" g_stop="49579" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="724" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E713884" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53210" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49879"/>
          <exon e_start="49583" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCTTAGTGTTCTTTTTCGAGGGGTAATATATTTTATAACTTGCTATCAAGACCAGCACGAGAAGCCTGTTGATTCATAAATTTGAACATGTGAATCTTTAATATTGGAGTACATTACACATGGTTCCACCACAATATACCCATCGTCGGGAAAAAGTAGTATGTACGTTACCCCTACCAAGTAGCTCAAAATAAAAGTTTACCTTCAGCAGTAGTATTAATATATTTTCACTTTTTTCCTAATGAATAGACGCTGATATTTACTATCGTTCCAGCAAAT</genome_strand>
        <mrna_strand>GAGGCACTATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA.......................................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552490" ref_strand="+" ref_description="SGN-E552490 [cTSB-4-B2]">
      <seq>aagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttnananaaannaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53437" stop="49579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53137" g_stop="53112" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="144" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="247" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="334" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49879" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="646" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49583" g_stop="49579" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="651" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="676"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E552490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53137" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49879"/>
          <exon e_start="49583" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCTTAGTGTTCTTTTTCGAGGGGTAATATATTTTATAACTTGCTATCAAGACCAGCACGAGAAGCCTGTTGATTCATAAATTTGAACATGTGAATCTTTAATATTGGAGTACATTACACATGGTTCCACCACAATATACCCATCGTCGGGAAAAAGTAGTATGTACGTTACCCCTACCAAGTAGCTCAAAATAAAAGTTTACCTTCAGCAGTAGTATTAATATATTTTCACTTTTTTCCTAATGAATAGACGCTGATATTTACTATCGTTCCAGCAAAT</genome_strand>
        <mrna_strand>AAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTNANA.......................................................................................................................................................................................................................................................................................................NAAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552502" ref_strand="+" ref_description="SGN-E552502 [cTSB-4-C11]">
      <seq>cttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="51832" stop="49579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="139" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="242" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="329" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50190" g_stop="49879" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="641" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49583" g_stop="49579" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="646" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="659"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E552502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49879"/>
          <exon e_start="49583" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCTTAGTGTTCTTTTTCGAGGGGTAATATATTTTATAACTTGCTATCAAGACCAGCACGAGAAGCCTGTTGATTCATAAATTTGAACATGTGAATCTTTAATATTGGAGTACATTACACATGGTTCCACCACAATATACCCATCGTCGGGAAAAAGTAGTATGTACGTTACCCCTACCAAGTAGCTCAAAATAAAAGTTTACCTTCAGCAGTAGTATTAATATATTTTCACTTTTTTCCTAATGAATAGACGCTGATATTTACTATCGTTCCAGCAAAT</genome_strand>
        <mrna_strand>GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA.......................................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553224" ref_strand="+" ref_description="SGN-E553224 [cTSB-3-C11]">
      <seq>cttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="51832" stop="49579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="139" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="242" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="329" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50190" g_stop="49879" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="641" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49583" g_stop="49579" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="646" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="666"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E553224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49879"/>
          <exon e_start="49583" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCTTAGTGTTCTTTTTCGAGGGGTAATATATTTTATAACTTGCTATCAAGACCAGCACGAGAAGCCTGTTGATTCATAAATTTGAACATGTGAATCTTTAATATTGGAGTACATTACACATGGTTCCACCACAATATACCCATCGTCGGGAAAAAGTAGTATGTACGTTACCCCTACCAAGTAGCTCAAAATAAAAGTTTACCTTCAGCAGTAGTATTAATATATTTTCACTTTTTTCCTAATGAATAGACGCTGATATTTACTATCGTTCCAGCAAAT</genome_strand>
        <mrna_strand>GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA.......................................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712685" ref_strand="+" ref_description="SGN-E712685 [FB05CB08]">
      <seq>gtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="51519" stop="49579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51219" g_stop="51129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="178" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50190" g_stop="49879" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="488" r_length="310" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49583" g_stop="49579" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="493" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="509"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E712685" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51219" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49879"/>
          <exon e_start="49583" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCTTAGTGTTCTTTTTCGAGGGGTAATATATTTTATAACTTGCTATCAAGACCAGCACGAGAAGCCTGTTGATTCATAAATTTGAACATGTGAATCTTTAATATTGGAGTACATTACACATGGTTCCACCACAATATACCCATCGTCGGGAAAAAGTAGTATGTACGTTACCCCTACCAAGTAGCTCAAAATAAAAGTTTACCTTCAGCAGTAGTATTAATATATTTTCACTTTTTTCCTAATGAATAGACGCTGATATTTACTATCGTTCCAGCAAAT</genome_strand>
        <mrna_strand>GTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCT--GGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA.......................................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316612" ref_strand="+" ref_description="SGN-E316612 [cTOA-25-N8]">
      <seq>cacaatccaaatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaagacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttaaactcatctttgtcctacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53506" stop="49561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53206" g_stop="53112" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="213" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="316" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="403" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49855" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="738" r_length="335" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E316612" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53206" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCT</genome_strand>
        <mrna_strand>CACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAAGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTT-AAACTCATCTTTGTCCTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301646" ref_strand="+" ref_description="SGN-E301646 [cLEW-23-C10]">
      <seq>aaatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttgggtattcgctacaatatgatatccccaaatgaggaaacattatgtgattttatatgctgcttctggtttctattgacatggaactcttttaaaactcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53498" stop="49571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53198" g_stop="53112" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="205" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="308" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="395" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49871" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="716" r_length="321" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E301646" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53198" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTT-GGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTT</genome_strand>
        <mrna_strand>AAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGGTATTCGCTACAATATGATATCCCCAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGGTTTCTATTGACATGGAACTCTTTTAAAACTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243120" ref_strand="+" ref_description="SGN-E243120 [cLEE-2-K3]">
      <seq>tggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttntgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="51459" stop="49579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51159" g_stop="51129" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="118" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50190" g_stop="49873" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="436" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E243120" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51159" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATC</genome_strand>
        <mrna_strand>TGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTNTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551817" ref_strand="+" ref_description="SGN-E551817 [cTSB-1-O8]">
      <seq>aagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttnnnanaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaannnttgggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53437" stop="49583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53137" g_stop="53112" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="144" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="247" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="334" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49879" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="646" r_length="312" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="693"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E551817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53137" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA</genome_strand>
        <mrna_strand>AAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348259" ref_strand="+" ref_description="SGN-E348259 [cTOF-27-I24]">
      <seq>aaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattntatatgctgcttctgttttctattgacatggaactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53464" stop="49584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53164" g_stop="53112" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="171" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="274" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="361" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49884" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="668" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E348259" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53164" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTT</genome_strand>
        <mrna_strand>AAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTNTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553034" ref_strand="+" ref_description="SGN-E553034 [cTSB-5-N10]">
      <seq>atttgtttcctgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53496" stop="49595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53196" g_stop="53112" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="202" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="305" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49893" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="690" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E553034" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53196" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATG</genome_strand>
        <mrna_strand>ATTTGTTTC-CTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732433" ref_strand="+" ref_description="SGN-E732433 [LB02AF07]">
      <seq>caatatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53481" stop="49619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53182" g_stop="53112" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="189" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="292" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49922" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="648" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="660"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E732433" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53182" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTT</genome_strand>
        <mrna_strand>CAATATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353602" ref_strand="+" ref_description="SGN-E353602 [cTOS-15-L16]">
      <seq>tcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacgaagcattagagaaacaacgncagaagcttgctgtaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="51825" stop="49688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51527" g_stop="51406" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="225" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="312" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50190" g_stop="49988" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="515" r_length="203" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E353602" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51527" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTC</genome_strand>
        <mrna_strand>TCAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACGAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGNCAGAAGCTTGCTGTAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281826" ref_strand="+" ref_description="SGN-E281826 [cLER-14-J24]">
      <seq>cactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacactgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataatgaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattccagaaacaacgcacgaagcttgctgaaaagattgaccaggtgaactcggcgattgatgacatttatacccagttgaggtcagatgacacaccaaatggagctgctgtgaactctgatgatgttagagctgatgtataagaaacattgctatcttcttagtttatcaagtcagctgacgacatcgagtatatgggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53488" stop="49699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53188" g_stop="53112" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="195" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="298" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="386" r_length="88" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49999" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="580" r_length="194" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E281826" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53188" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAA-GAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAG--TATCAAGTCAGCTGAGGACATCGAGTATATGGGAAT</genome_strand>
        <mrna_strand>CACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAC..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAATGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCACGAAGCTTGCTGAAAAGATTGACCAGGTGAACTCGGCGATTGATGACATTTATACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCTGATGATGTTAGAGCTGATGTATAAGAAACATTGCTATCTTCTTAGTTTATCAAGTCAGCTGACGACATCGAGTATATGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337812" ref_strand="+" ref_description="SGN-E337812 [cTOE-17-F18]">
      <seq>tttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53495" stop="49731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53195" g_stop="53112" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="202" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="305" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="50031" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="552" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E337812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53195" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="50031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATC</genome_strand>
        <mrna_strand>TTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281821" ref_strand="+" ref_description="SGN-E281821 [cLER-14-H24]">
      <seq>tccaaatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53501" stop="49765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53201" g_stop="53112" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="208" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="311" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="398" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="50065" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="524" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E281821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53201" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="50065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCT</genome_strand>
        <mrna_strand>TCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283945" ref_strand="+" ref_description="SGN-E283945 [cLER-13-H9]">
      <seq>aaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53464" stop="49825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53164" g_stop="53112" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="171" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="274" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="361" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="50125" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="427" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E283945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53164" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="50125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACC</genome_strand>
        <mrna_strand>AAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274487" ref_strand="+" ref_description="SGN-E274487 [cLEN-11-K11]">
      <seq>ggaaaaatataaacgtactataacccattaatcacttctatggtgtaatcttctccacaatccaaatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttacagctaccaagttgtccttcagtccaagtcacggaggaaaatcatatacttctaaaagatcattgatcattcaagcgtcatacagtgatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53561" stop="51102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53261" g_stop="53112" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="268" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51224" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="276" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E274487" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53261" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATATAAACGTACTATAACCCATTAATCACTTCTCTGTTGTAATCTTCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTG</genome_strand>
        <mrna_strand>GGAAAAATATAAACGTACTATAACCCATTAATCACTTCTATGGTGTAATCTTCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTACAGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATACTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312839" ref_strand="+" ref_description="SGN-E312839 [cTOA-8-A6]">
      <seq>ttcactgatttaatatatcttagcttctaatactagtctcttgagctccttagactgttggttttggatattgttagagttctacattggttggtgagtgggcagtcctcccctcccgagctagcttttggggttgaatttgcctaaagtgttatatctttacacggtattagtgtcaggtccatgcccctttgagttctcaaccatgcttcagttaggatgggtgtgaggggtgttagaacaccagatgtttgctagtaacatgtgtgtgctagtagtaagccagtcttaacattgtagcatgaacttgtcaaatgtttatctgttaggatccagcgacccgtgttactaaagttatgagctctagcatccgaacaatgagccgtttggtggttacaactaccatatccatttgtacttctataagtttgatagggagatgcctaacttcttatactttcccctagttcacatattcatgcatgaaataggcgttttctgcaattgggttatattctgcttggtgataacgtgattccccctttttttatttgtcacacatttcttattcaattttgtatattttgttcaagtgataattgttgttgtttgtgattattattattattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53109" stop="51878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52809" g_stop="52178" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E312839" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52809" e_stop="52178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATT</genome_strand>
        <mrna_strand>TTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAAGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302371" ref_strand="+" ref_description="SGN-E302371 [cLEW-27-K22]">
      <seq>cttttcaatttccccaaaccctagaactggaaaatctaagtaaatgggtcgtcttgtttcttgattttaatatctgggtcgtttttttagttctcgttttgcgtatcagaatcttcaaacaagttcatttgctgcagaaaaaaggagcaatttttaatatttttatcttcaatattagtagttcattcacattggtggaagttggtttgttggcatttgttttttatggtttgagttgaaacgggtcggactcggttctctatggctcggcgtcatgggtggcaactaccggctcactcgtttcaggttgtggctataacagttttctgcctgctatctgttggcttctatgcattttttgctccatttctaggaaaagacatctttgagtacatagcaattggtgtttattccttcctggctctatgtgtgttcatactctatgttagatgcacagcaattgatcctgctgatcctgggattctcattgaagctgacaagtcaacggcctatcaatcacacaacgaaatagagttgcctggtgatatatctgctgcagggggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="56848" stop="59645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57148" g_stop="57453" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57454" i_stop="58561" i_length="1108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58675" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="420" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58676" i_stop="58775" i_length="100">
            <donor d_prob="0.043" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58776" g_stop="58896" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="541" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58897" i_stop="59321" i_length="425">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59322" g_stop="59345" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="565" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E302371" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57148" e_stop="57453"/>
          <exon e_start="58562" e_stop="58675"/>
          <exon e_start="58776" e_stop="58896"/>
          <exon e_start="59322" e_stop="59345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAATTTCCCCAAACCCTAGAACTGAAAAATCTAAGTAAATGGGTCGTCTTGTTTCTTGATTTTAATATCTGGGTCGTTTTTTTAGTTCTCGTTTTGCGTATCAGAATCTTCAAACAAGTTCATTTGCTGCAGAAAAAAGGAGCAATTTTTAATATTTTTATCTTCAATATTAGTAGTTCATTCACATTGGTGGAAGTTGGTTTGTTGGCATTTGTTTTTTATGGTTTGAGTTGAAACGGGTCGGACTCGGTTCTCTATGGCTCGGCGTCATGGGTGGCAACTACCGGCTCACTCGTTTCAGGTTCTTCATTTTGCTCTTTGTTGTATTTGGATCACTTGTAAAGCTGTAATGTTGGTGGTGTTGGATCTTTTGGGGTCTTTAGAGTGGGTTTATTGGTTTGGTTTGGTGATATTGCTGATTTGTTTCTTTTAGTCAACTGCACTTTGACACTCTTTTACTTTTCCTTTTTAAGTGATGTTTTAGTTAGTTATGCTTTGTAGATTTGTGATTTGCTCAAATTTTAGTTACAGTCGCTTTGCTATTTCTAGTGTTTCACATTCTGAAAAGATGCGATCTTTAGGTTCTGAGTTATGAATTTTACTTGAGTTACAGTAGCTTTATTTGGATTTTTTAAAGTTGGTTTTGGGCCTGTGATGAATTTGAGAAAAGGAGGTCAAATTTTAGTTTGTGGTAGAAATTTGTTTGACGGGTTCCCTTATTATTATTTTCTGCTCTGATAATTTCCAACTTTATGGTGATCACCCTGCATTGAAGGGGAGTCTTGGAGCAATGGTAAAGTTGTATCCAGATGACCTATAGGTCACGGGTGATCTTAACTGATGCTTGCATCATTGTAGGATGCCTACATCACACCCCTTTGCCCTTCCCTGGACCTGCATGAATGCGGGATGCTTAGTGCACCTGCTGCTCTTTTGTATGGCGATTACCTTGCATTGTAACAAGATTAAAATTTCTGACTGACTGAGATCAACCTTCCATCTCTCTTGATGAAATAATGTATATCTTCTTCATCCAGTTCCTTGTTGGACAAACTCTACTATTTAGTCTAAAGAGATTTTAGCTCTGAACCGCGTTCGCTGGATTGTCTAATGCAACTGTTCTGTATGTGTACTTGTAGCTTGGTCCCCGTGATATTCTTTCTTGTGGTCCGTCTGACAAAATAAAATACTTCATTGGTTTTTTGTGTGTAATCAGCATGCATTGCTTACTTCCGTACTCATTTTTCCATTTCTCAAGTCTCGGAATGATAAGTTGAACCTGAAGTTCTTCAGGAAGGCACAGCCCTTACTATTATTATTGATTAGTGACATCATATCGTATCGGCCTTTATGATTAGCTACTATTATCTATTGTTGTTGTGTACTCATTATTCCATGTCGCTGTGCAGGTTGTGGCTATAACAGTTTTCTGCCTGCTATCTGTTGCCTTCTATGCATTTTTTGCTCCATTTCTAGGAAAAGACATCTTTGAGTACATAGCAATTGGTGTTTATTCCTTCCTGGTGAGTGTATTAGGAATGAAGTTGCTTGCAATTTTTGATGCAAACACTCTATTCCTGTTTCACTTGTTACTTCTTGTCATCTTTTGACTCTTGCTTTCAGGCTCTATGTGTGTTCATACTCTATGTTAGATGCACAGCAATTGATCCTGCTGATCCTGGGATTCTCATTGAAGCTGACAAGTCAACGGCCTATCAATCACACAACGAAATAGAGTTGCCTGGTTAGTATTGGATGCAATATGATTCTTTTATTCTTCTTCCTTTGATAAAGGTGAATCTGCAACGGGATCAGAAAAACCTGAAGATACATCTGTTATCTTTTGGTTGGTAATCAAAGACCAAGTATTGTGTCTTTTGGATAAGTTGAAGATACTAGTAAACCCTTTGACCATCTAGACTTTCGGAAGTATAACAAAGCAAAATTATAAGAAATATCAAGTCTTACTAGTAGTCTAGTACTTAAACTGAAAGACTCAAGTTTTACAATAGATGAGAAAAGGGCAAAGGACTATCAAGTGTTAATTATATGCCTTTGTCGCTTTATCTTATTGGGGAGTGAGTGAATGAAAAGATGGAACAATTGGTATCTATTTGGTAATTTGACCACAATTCATCATCTTTTGACATCTTGAACTGCTTGTGATAGGTGATATATCTGCTGCAGGGGGTC</genome_strand>
        <mrna_strand>CTTTTCAATTTCCCCAAACCCTAGAACTGGAAAATCTAAGTAAATGGGTCGTCTTGTTTCTTGATTTTAATATCTGGGTCGTTTTTTTAGTTCTCGTTTTGCGTATCAGAATCTTCAAACAAGTTCATTTGCTGCAGAAAAAAGGAGCAATTTTTAATATTTTTATCTTCAATATTAGTAGTTCATTCACATTGGTGGAAGTTGGTTTGTTGGCATTTGTTTTTTATGGTTTGAGTTGAAACGGGTCGGACTCGGTTCTCTATGGCTCGGCGTCATGGGTGGCAACTACCGGCTCACTCGTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCTATAACAGTTTTCTGCCTGCTATCTGTTGGCTTCTATGCATTTTTTGCTCCATTTCTAGGAAAAGACATCTTTGAGTACATAGCAATTGGTGTTTATTCCTTCCTG....................................................................................................GCTCTATGTGTGTTCATACTCTATGTTAGATGCACAGCAATTGATCCTGCTGATCCTGGGATTCTCATTGAAGCTGACAAGTCAACGGCCTATCAATCACACAACGAAATAGAGTTGCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATATCTGCTGCAGGGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726216" ref_strand="+" ref_description="SGN-E726216 [LA11AG01]">
      <seq>cttgttctcttagggtttaatattctttttttcttctctgtttcaggccttatgtactgctgtttcactccttgcaactgtgcctttaggtgaattgttcttctttcacattattctcattcgtaagggtattacaacatatgagtatgttgttgcaatgagatctcaaagtgagccgcctggaccctctgtagatggaggtgatcagcagagtttgccatcatcgccgaccagctctgcggtgactgccatcagtggaagaagttctgttgggatgagcttgcaacataaaggtgcttggtgtactccttccaagagctcatatccgcccagtcgtgccagcagagaagacattgaaacatgtggccacagcatgagtaacttgagcagtcctcttgcccctaaccgaactccatctccattagcactgcagcatcacccttcaaatagagaccactttaacccaatatatcagtcatctgcaaatcaatctccgtggtcagcaaaagcatgccatgagaacgaatctctgccccctgacaatctctcagaggtatccactaggaagagtaatatgggcactccagagagtacaaggtcatcagttttctgggatcaagaagccgggcgatttgttactgctaatgctaacaggggtgctggttctacttcacaagtttctggaacagagcttacatacactggtcaatctatattttttggagggcctttactgaacgagaacatgaacagaggggcaagaagtagcggtacaccgtttgctggtggtccacagcggagttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="61318" stop="63367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61618" g_stop="61744" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61745" i_stop="61847" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61848" g_stop="62026" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="306" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62027" i_stop="62566" i_length="540">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62567" g_stop="63067" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="807" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E726216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61618" e_stop="61744"/>
          <exon e_start="61848" e_stop="62026"/>
          <exon e_start="62567" e_stop="63067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCTCTTAGGGTTTAATATTCTTTTTTTCTTCTCTGTTTCAGGCCTTATGTACTGCTGTTTCACTCCTTGCAACTGTGCCTTTAGGTGAATTGTTCTTCTTTCACATTATTCTCATTCGTAAGGTATGCCCATTCATATCCTCATTCCTTCTCGATTTTTATCTGTGTATATGCGTGTACTTAGATATAAGAGATATTCTGGTACTGTTGTTATGCTGTATTACAGGGTATTACAACATATGAGTATGTTGTTGCAATGAGATCTCAAAGTGAGCCGCCTGGACCCTCTGTAGATGGAGGTGATCAGCAGAGTTTGCCATCATCGCCGACCAGCTCTGCGGTGACTGCCATCAGTGGAAGAAGTTCTGTTGGGATGAGCTTGCAACATAAAGGTGCTTGGTGTACTCCTCCAAGAATCTTCATGGATCATCAGGTTAAACTTCTTATGTGCTTCTAGTTTTGTGAGATTGATTAAGAAAGTTCTCTCTTTTTTTTCGGGTGGAGGATATAGGAAGGGAAGGAGAATGAGTTCTGACTCGAGCAACTAAGCTCATCCCTTGTCCTTGAGAAAAACAGTCAAATTATAGAACGGTACTGTTAATTTCATTCCTCTAACCACCTCGTGCAGGATGAAATTATTCCTCATCTTCAGCCTGGGCGATTGCCATCTACTGTTGATCCTGATGCACTAGACAAGGACAAAAAGGCATCCCACCGTCCAGTCCGAATTAGTGCATGGAAGCTGGCGAAACTAGATTCTAGTGAAGCAATCAAAGCTGGTGCCAAGGCTAGAGCTTCATCATCTGTGCTACGCCCAGTTGGTGCCAAGCACAATCCTTACGACGCTGATCATTTGTCCAGTGGCATGAGTGGTATAAGCAGTCCGGCAAGTACTAATCAAGGATTTTACGACAATAATGGTAGAGCTGGGACATCAAGGTTGTCTCCTTCCAAGAGCTCATATCCGCCCAGTCGTGCCAGCAGAGAAGACATTGAAACATGTGGCCACAGCATGAGTAACTTGAGCAGTCCTCTTGCCCCTAACCGAACTCCATCTCCATTAGCACTGCAGCATCACCCTTCAAATAGAGACCACTTTAACCCAATATATCAGTCATCTGCAAATCAATCTCCGTGGTCAGCAAAAGCATGCCATGAGAACGAATCTCTGCCCCCTGACAATCTCTCAGAGGTATCCACTAGGAAGAGTAATATGGGCACTCCAGAGAGTACAAGGTCATCAGTTTTCTGGGATCAAGAAGCCGGGCGATTTGTTACTGCTAATGCTAACAGGGGTGCTGGTTCTACTTCACAAGTTTCTGGAACAGAGCTTACATACACTGGTCAATCTATATTTTTTGGAGGGCCTTTACTGAACGAGAACATGAACAGAGGGGCAAGAAGTAGCGGTACACCGTTTGCTGGTGGTCCACAGCGGAGTTACTA</genome_strand>
        <mrna_strand>CTTGTTCTCTTAGGGTTTAATATTCTTTTTTTCTTCTCTGTTTCAGGCCTTATGTACTGCTGTTTCACTCCTTGCAACTGTGCCTTTAGGTGAATTGTTCTTCTTTCACATTATTCTCATTCGTAAG.......................................................................................................GGTATTACAACATATGAGTATGTTGTTGCAATGAGATCTCAAAGTGAGCCGCCTGGACCCTCTGTAGATGGAGGTGATCAGCAGAGTTTGCCATCATCGCCGACCAGCTCTGCGGTGACTGCCATCAGTGGAAGAAGTTCTGTTGGGATGAGCTTGCAACATAAAGGTGCTTGGTGTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCCAAGAGCTCATATCCGCCCAGTCGTGCCAGCAGAGAAGACATTGAAACATGTGGCCACAGCATGAGTAACTTGAGCAGTCCTCTTGCCCCTAACCGAACTCCATCTCCATTAGCACTGCAGCATCACCCTTCAAATAGAGACCACTTTAACCCAATATATCAGTCATCTGCAAATCAATCTCCGTGGTCAGCAAAAGCATGCCATGAGAACGAATCTCTGCCCCCTGACAATCTCTCAGAGGTATCCACTAGGAAGAGTAATATGGGCACTCCAGAGAGTACAAGGTCATCAGTTTTCTGGGATCAAGAAGCCGGGCGATTTGTTACTGCTAATGCTAACAGGGGTGCTGGTTCTACTTCACAAGTTTCTGGAACAGAGCTTACATACACTGGTCAATCTATATTTTTTGGAGGGCCTTTACTGAACGAGAACATGAACAGAGGGGCAAGAAGTAGCGGTACACCGTTTGCTGGTGGTCCACAGCGGAGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340959" ref_strand="+" ref_description="SGN-E340959 [cTOF-5-O10]">
      <seq>gactcctgtaggtacattttgactgtgtatatcgtaatattactgcggtttcaagtcgagaatctaaactgttggctggtaatcggatcatttcacagccttacgagttccaggttggagctcctccagggaaagagcggaaacgtgattttgtggacaatccaaatggtttattttctgctcaagcagcaccaaaacctccaaaggcaatgtatacaataactgaagggatgaaagttggaggaaagaggactgtgatcgttcctccagaagctggatatggttcaaggggaatgaatgaaattccgccaggggctacattcaacctgaatattgaactattggaagtaaagtcatcagaacggaagcaataggtgtacccggactgtgccatatgttttgccttccctcttcttcattgttgtaaaagttgtgttcactcataaacaccaacagctatggaatcaacaacagttcccgctcacccttcacgtgatttgaaccacgacttattggataaaagagacggtgcctcatcaacagtgccatctcctctcatgatttttcttcccttcatgttaactgttcagtctttgttatgtagatgaagtaatttgcttccaattttttccacgcttcttcatgtgtatgtaaacttttacttcttaacttnccatgttactaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="64773" stop="66958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65073" g_stop="65170" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65171" i_stop="65298" i_length="128">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65299" g_stop="65448" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="248" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65449" i_stop="65601" i_length="153">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.676" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65602" g_stop="65661" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="308" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65662" i_stop="66280" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66281" g_stop="66658" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="686" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E340959" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65073" e_stop="65170"/>
          <exon e_start="65299" e_stop="65448"/>
          <exon e_start="65602" e_stop="65661"/>
          <exon e_start="66281" e_stop="66658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCTGTAGGTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAGGTCTGTTGTGATGACTTCTCATTAGAAATGAGTATGCTATAATTGAATTGACATCTTACGAATAGACATGTATTGCTGCCCTTGGATACATTTATTACTGATACATATGTCTTTCTACTCTTAAGTAGCCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAGGTGTGATGACATTTCATTTGTGCCTAAAATGTCTTTTTCTTTTATAATAGTTTCTATGTGTAAACTCTGATCTCTGAAAAGTTAATTAAAGTGTAACATAAACTGACAGCTAACTCATTACTTGCTGCTTGTCTTATGGTATCTTTTGCTCAGAGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCGGTATGAACCTCACTTTGTTTCATTCTTTGTTATCTTAGTTGACAAAGTTATTATTGTGGTTTGCTTCTTTTCAAAGAAATGTCAACTCGACCAAGGTCGATGAATTCACTGTATCTGTTAAATCACATTCACTTAGAAGTGAGTTTCTCTTGAGAGTAGCTTGGGCTCAAACGACTTTGCTATCCTGGTATCTATTCCAAGGCCTAACAATATTGTTGCGTGCTTGTTTAGTAATTAGTTATTCAAGGGGTAACCAGAATGTCCAATCAAAGTTCTTGACATGACCAAATATAGTATATAGCCGTTAGAAATAACTTATCGATGTACTTATTACCTGTGAGTGGTTGTTTTCAGCATCACTCACCAAATTGCGAAAAGCAAAGCTATCTGCAGATTAAACAACCCTTATCGATGTACTTATTACCTGTGAGTGGTTGTTTTCAGCATCACTCACCAAATTGCGAAAAGCAAAGCTATCTGCAGATTAAACAACCCTTATACTAGGAGTTCTTGGCTGAAGATGCACAGATATCTTATTCGATTTGATTGGTGTGCTTCTATCATCTTTAAGTCTCTTTAGTTTCGAGATCTAATGAATATTTCAACTTACATGGTGCAGCCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGA</genome_strand>
        <mrna_strand>GACTCCTGTAGGTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAG................................................................................................................................CCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAG.........................................................................................................................................................AGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTNCCATGTTACTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733017" ref_strand="+" ref_description="SGN-E733017 [LB03DA06]">
      <seq>ctatattttgactgtgtatatcgtaatattactgcggtttcaagtcgagaatctaaactgttggctggtaatcggatcatttcacagtagccttacgagttccaggttggagctcctccagggaaagagcggaaacgtgattttgtggacaatccaaatggtttattttctgctcaagcagcaccaaaacctccaaaggcaatgtatacaataactgaagggatgaaagttggaggaaagaggactgtgatcgttcctccagaagctggatatggttcaaggggaatgaatgaaattccgccaggggctacattcaacctgaatattgaactattggaagtaaagtcatcagaacggaagcaataggtgtacccggactgtgccatatgttttgccttccctcttcttcattgttgtaaaagttgtgttcactcataaacaccaacagctatggaatcaacaacagttcccgctcacccttcacgtgatttgaaccacgacttattggataaaagagacggtgcctcatcaacagtgccatctcctctcatgatttttcttcccttcatgttaactgttcagtctttgttatgtagatgaagtaatttgcttccaattttttccacgcttcttcatgtgtatgtaaacttttacttcttaacttcccatgttactagatacatatatatatattagagagacatcacactatcttgacaatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="64785" stop="67007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65084" g_stop="65170" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65171" i_stop="65295" i_length="125">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65296" g_stop="65448" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="240" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65449" i_stop="65601" i_length="153">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.676" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65602" g_stop="65661" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="300" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65662" i_stop="66280" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66281" g_stop="66707" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="727" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="737"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E733017" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65084" e_stop="65170"/>
          <exon e_start="65296" e_stop="65448"/>
          <exon e_start="65602" e_stop="65661"/>
          <exon e_start="66281" e_stop="66707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAGGTCTGTTGTGATGACTTCTCATTAGAAATGAGTATGCTATAATTGAATTGACATCTTACGAATAGACATGTATTGCTGCCCTTGGATACATTTATTACTGATACATATGTCTTTCTACTCTTAAGTAGCCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAGGTGTGATGACATTTCATTTGTGCCTAAAATGTCTTTTTCTTTTATAATAGTTTCTATGTGTAAACTCTGATCTCTGAAAAGTTAATTAAAGTGTAACATAAACTGACAGCTAACTCATTACTTGCTGCTTGTCTTATGGTATCTTTTGCTCAGAGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCGGTATGAACCTCACTTTGTTTCATTCTTTGTTATCTTAGTTGACAAAGTTATTATTGTGGTTTGCTTCTTTTCAAAGAAATGTCAACTCGACCAAGGTCGATGAATTCACTGTATCTGTTAAATCACATTCACTTAGAAGTGAGTTTCTCTTGAGAGTAGCTTGGGCTCAAACGACTTTGCTATCCTGGTATCTATTCCAAGGCCTAACAATATTGTTGCGTGCTTGTTTAGTAATTAGTTATTCAAGGGGTAACCAGAATGTCCAATCAAAGTTCTTGACATGACCAAATATAGTATATAGCCGTTAGAAATAACTTATCGATGTACTTATTACCTGTGAGTGGTTGTTTTCAGCATCACTCACCAAATTGCGAAAAGCAAAGCTATCTGCAGATTAAACAACCCTTATCGATGTACTTATTACCTGTGAGTGGTTGTTTTCAGCATCACTCACCAAATTGCGAAAAGCAAAGCTATCTGCAGATTAAACAACCCTTATACTAGGAGTTCTTGGCTGAAGATGCACAGATATCTTATTCGATTTGATTGGTGTGCTTCTATCATCTTTAAGTCTCTTTAGTTTCGAGATCTAATGAATATTTCAACTTACATGGTGCAGCCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGATACATATATATATATTAGAGAGACATCACACTATCTTGACAATGAGAAA</genome_strand>
        <mrna_strand>CTATATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAG.............................................................................................................................TAGCCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAG.........................................................................................................................................................AGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGATACATATATATATATTAGAGAGACATCACACTATCTTGACAATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336600" ref_strand="+" ref_description="SGN-E336600 [cTOE-4-M4]">
      <seq>gtcagtagacagtagcgttcaactccgacgatggtctttttctctgtttgatatttttccgatctgatagccggagtagtataacgcataaagctaaaaggaagaatcagaaaangacgattcgtctttatttgttgttttcgtttttcgttttacttgctcaatggtcgcctgcactttccgatctagtcatctccaaagttgatcgaaagattgacctgacctctcaagtagtgcgtgtgactgcaaatctgaagatagaaaatactggtaatgatccaatttcagaggttctgttaccatttggagatcaccaggcaaaagatttagcatttttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="66846" stop="68737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67146" g_stop="67357" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67358" i_stop="68115" i_length="758">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68116" g_stop="68160" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="257" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68161" i_stop="68354" i_length="194">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68355" g_stop="68437" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="340" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E336600" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67146" e_stop="67357"/>
          <exon e_start="68116" e_stop="68160"/>
          <exon e_start="68355" e_stop="68437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTAGACAGTAGCGTTCAACTCCGACGATGGTCTTTTTCTCTGTTTGATATTTTTCCGATCTGATAGCCGGAGTAGTATAACGCATAAAGCTAAAAGGAAGAATCAGAAAATGACGATTCGTCTTTATTTGTTGTTTTCGTTTTTCGTTTTACTTGCTCAATGGTCGCCTGCACTTTCCGATCTAGTCATCTCCAAAGTTGATCGAAAGGTACGTTACGTCTGTGATTGGTGTTCAATTTGGTTTTGATTTGTTAATGTATGAATGTGCTATTCTTTTTCCCTATGATATTGAGGGTAAGTGGATTATATGATTAAGATCTAGTCGTTAATTGAGTAACCTTTTGGGAGAATTTGATAAATATTTTGGTTTGCAAACCTCCTTATACCTGCTGGTGGTGGAAGATGATAGGTACACGTACCAATTAGTTGAAGTAACCAAAAAAAAGTAGCAAATGTTGTAAGAGGAATTATATAGTCAAGTAATTTCAACAAAAGATGCTATTTTTTTATATTCCTTGCATTGGCATCAAAGGGAGCTGGTAGTTCTTAAAAAAATAGAGCTTTTTTAGGATTGACGAACTTTAAGTGATTAATTGTTCTTGCATAATAGTATAACTATAGTGCTCTGACTGTGATTAATTTCTGCCTATCCCCTGTTTCTTTTTCTTTTCTTTGTGTTTATTCTCAAGCATGATCAAGTTGACTGATGCATAGAATGTGAGGTCATAGTATAGTAATGATAGTCTTCACCCTTTCTTTTTGTAATTATCTTCTAAAAATTTAATGGTTCACTGCACGGTTGATACTATCTTTGATTGTCGTGTTGTCACTTGGATTATCAGTCATTCCACATTTTGGTGTAGTTTGAAAGAGAAAAACTGAGCTGTTAATTAGACTATTGGATCTAAATTGCTATTATGCATTCAATCATGCTTACTTCTGGCTGTCATGTATCTTGTATTGCAGATTGACCTGACCTCTCAAGTAGTGCGTGTGACTGCAAATCTGAAGGTTTGTGGTAATTGCTTGCGTTTTTTGAGATTCTGGACAAGTTTGTTGAATATTCCAAACCGCAGATAACGGATTTAATAGTCTATACTTTAATCGAGAAGTAGTTAATTGTATTTGAGAATTTGCAAAATTTAATGACTTAGTGTTACTATCTAACTAGTGATGCTTGTATTATTTCTTATTTGTATGTTCAGATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGT</genome_strand>
        <mrna_strand>GTCAGTAGACAGTAGCGTTCAACTCCGACGATGGTCTTTTTCTCTGTTTGATATTTTTCCGATCTGATAGCCGGAGTAGTATAACGCATAAAGCTAAAAGGAAGAATCAGAAAANGACGATTCGTCTTTATTTGTTGTTTTCGTTTTTCGTTTTACTTGCTCAATGGTCGCCTGCACTTTCCGATCTAGTCATCTCCAAAGTTGATCGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACCTGACCTCTCAAGTAGTGCGTGTGACTGCAAATCTGAAG..................................................................................................................................................................................................ATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348034" ref_strand="+" ref_description="SGN-E348034 [cTOF-31-C10]">
      <seq>tgttcagatagaaaatactggtaatgatccaatttcagaggttctgttaccatttggagatcaccaggcaaaagatttagcatttttagtggcaacaaccagtgaagggaaagggaaaactaaaacttcttccaatagcctacctatcaaacttgttaaccctgaaggcatgccaccatcattgacttggtattctgtctccctaccgaaggagctggcaaaggggcagagcctaaatttggaagtcaggactgcatttacgcatgcactacagccatttcctgagaaaattactcaagctgatatccagctccttgtgtttcaggagagtgcctactatatttctccttatgcagttaatgtccaatctctcagtgtcaaattacccgaaccaaaagtcgaatcatacactaagttagagaacaccaaattttctggttcagaaattaaatatggaccttatgagaatcttcctcctttctcattctcgcatatagcagtacacttcgtgagcaataagccattcgcagttgcccaggagttagtgcgagagattgaagtctctcattggggaaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctcccagagcccattccatttattacagagatgaaattggcaatatatcaacatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68048" stop="69498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68348" g_stop="68989" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69075" g_stop="69198" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="766" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E348034" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68348" e_stop="68989"/>
          <exon e_start="69075" e_stop="69198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAGATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGTGGCAACAACCAGTGAAGGGAAAGGGAAAACTAAAACTTCTTCCAATAGCCTACCTATCAAACTTGTTAACCCTGAAGGCATGCCACCATCATTGACTTGGTATTCTGTCTCCCTACCGAAGGAGCTGGCAAAGGGGCAGAGCCTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCC</genome_strand>
        <mrna_strand>TGTTCAGATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGTGGCAACAACCAGTGAAGGGAAAGGGAAAACTAAAACTTCTTCCAATAGCCTACCTATCAAACTTGTTAACCCTGAAGGCATGCCACCATCATTGACTTGGTATTCTGTCTCCCTACCGAAGGAGCTGGCAAAGGGGCAGAGCCTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCCAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702781" ref_strand="+" ref_description="SGN-E702781 [FA19CG02]">
      <seq>ctaaatttggaagtcaggactgcatttacgcatgcactacagccatttcctgagaaaattactcaagctgatatccagctccttgtgtttcaggagagtgcctactatatttctccttatgcagttaatgtccaatctctcagtgtcaaattacccgaaccaaaagtcgaatcatacactaagttagagaacaccaaattttctggttcagaaattaaatatggaccttatgagaatcttcctcctttctcattctcgcatatagcagtacacttcgtgagcaataagccattcgcagttgcccaggagttagtgcgagagattgaagtctctcattggggaaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgattcatcaaagacattgttacaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttagggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttttggttgcccaattgaggaggtggttgttgaaaaccttgttgtgaaggttgtactgccagaaggttcaaaggatatttctgtctcggtcccttttcctgtncaagagtcaagagacacgaaattttcccatttggatatgattggtagaccagtggttgttcttgaaaagaccaatgctgtgcatgagcataaccaatatttccaggtctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68280" stop="70248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68580" g_stop="68989" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69075" g_stop="69222" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="558" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69294" g_stop="69470" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="735" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69688" g_stop="69756" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="804" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69757" i_stop="69852" i_length="96">
            <donor d_prob="0.706" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69853" g_stop="69942" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="894" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E702781" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68580" e_stop="68989"/>
          <exon e_start="69075" e_stop="69222"/>
          <exon e_start="69294" e_stop="69470"/>
          <exon e_start="69688" e_stop="69756"/>
          <exon e_start="69853" e_stop="69942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAGGTAATACTTCTATAAGAACTGAATAGGCTTTAATTCCATATTTATAATGATGTAATTTAGTGTTATCACAAGAATCTAAAATATAATTTATTTAGAAGATGATGATATATTTTGTGCAAAAGAGGGCTTATGGTATAGTGTGATTGTATGGGCCTTTAATTTTTTTTTTCTTGAAAAATTCTTCAAGATAATGATGGAATTGTTTTCTGGAGAACAGGTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGACGTATGAGTAAATCTTAGTTTTTCTCCTCTGAAGTTCCTCTTGTATGATAACCTTTATTCCTCTAACATTCTATTACTTCTTATGTTTTATTTGCAGACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG</genome_strand>
        <mrna_strand>CTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAG.........................................................................................................................................................................................................................GTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTNCAAGAGTCAAGAGAC................................................................................................ACGAAATTTTCCCATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369904" ref_strand="+" ref_description="SGN-E369904 [TUS-26-N7]">
      <seq>ttctccttatgcagttaatgtccaatctctcagtgtcaaattacccgaaccaaaagtcgaatcatacactaagttagagaacaccaaattttctggttcagaaattaaatatggaccttatgagaatcttcctcctttctcattctcgcatatagcagtacacttcgtgagcaataagccattcgcagttgcccaggagttagtgcgagagattgaagtctctcattggggaaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgattcatcaaagacattgttacaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttagggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttttggttgcccaattgaggaggtgggttgttgaaaaccttgttgtgaaggttggactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68390" stop="69772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68690" g_stop="68989" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69075" g_stop="69222" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="448" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69294" g_stop="69470" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="626" r_length="178" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.690" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69688" g_stop="69697" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="636" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E369904" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68690" e_stop="68989"/>
          <exon e_start="69075" e_stop="69222"/>
          <exon e_start="69294" e_stop="69470"/>
          <exon e_start="69688" e_stop="69697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGT-GGTTGTTGAAAACCTTGTTGTGAAGGTAATACTTCTATAAGAACTGAATAGGCTTTAATTCCATATTTATAATGATGTAATTTAGTGTTATCACAAGAATCTAAAATATAATTTATTTAGAAGATGATGATATATTTTGTGCAAAAGAGGGCTTATGGTATAGTGTGATTGTATGGGCCTTTAATTTTTTTTTTCTTGAAAAATTCTTCAAGATAATGATGGAATTGTTTTCTGGAGAACAGGTTGTACTGC</genome_strand>
        <mrna_strand>TTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGGTTGTTGAAAACCTTGTTGTGAAG.........................................................................................................................................................................................................................GTTGGACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259588" ref_strand="+" ref_description="SGN-E259588 [cLEG-42-L20]">
      <seq>ttctccttatgcagttaatgtccaatctctcagtgtcaaattacccgaaccaaaagtcgaatcatacactaagttagagaacaccaaattttctggttcagaaattaaatatggaccttatgagaatcttcctcctttctcattctcgcatatagcagtacacttcgtgagcaataagccattcgcagttgcccaggagttagtgcgagagattgaagtctctcattggggaaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgattcatcaaagacattgttacaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttagggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68390" stop="69724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68690" g_stop="68989" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69075" g_stop="69222" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="448" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69294" g_stop="69424" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="579" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E259588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68690" e_stop="68989"/>
          <exon e_start="69075" e_stop="69222"/>
          <exon e_start="69294" e_stop="69424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTT</genome_strand>
        <mrna_strand>TTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256467" ref_strand="+" ref_description="SGN-E256467 [cLEG-38-F23]">
      <seq>ttctccttatgcagttaatgtccaatctctcagtgtcaaattacccgaaccaaaagtcgaatcatacactaagttagagaacaccaaattttctggttcagaaattaaatatggaccttatgagaatcttcctcctttctcattctcgcatatagcagtacacttcgtgagcaataagccattcgcagttgcccaggagttagtgcgagagattgaagtctctcattggggaaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgattcatcaaagacattgttacaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68390" stop="69665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68690" g_stop="68989" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69075" g_stop="69222" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="448" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69294" g_stop="69365" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="520" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E256467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68690" e_stop="68989"/>
          <exon e_start="69075" e_stop="69222"/>
          <exon e_start="69294" e_stop="69365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGG</genome_strand>
        <mrna_strand>TTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318189" ref_strand="+" ref_description="SGN-E318189 [cTOA-29-F13]">
      <seq>tccaatctctcagtgtcaaattacccgaaccaaaagtcgaatcatacactaagttagagaacaccaaattttctggttcagaaattaaatatggaccttatgagaatcttcctcctttctcattctcgcatatagcagtacacttcgtgagcaataagccattcgcagttgcccaggagttagtgcgagagattgaagtctctcattggggaaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgattcatcaaagacattgttacaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttanggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68410" stop="69727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68710" g_stop="68989" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69075" g_stop="69222" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="428" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69294" g_stop="69427" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="562" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E318189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68710" e_stop="68989"/>
          <exon e_start="69075" e_stop="69222"/>
          <exon e_start="69294" e_stop="69427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGG</genome_strand>
        <mrna_strand>TCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTANGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207348" ref_strand="+" ref_description="SGN-E207348 [cLEC-36-E19]">
      <seq>aaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgattcatcaaagacattgttacaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttagggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttttggttgcccaattgaggaggtggttgttgaaaaccttgttgtgaaggttgtactgccagaaggttcaaaggatatttctgtctcggtcccttttcctgtcaaagagtcaagagacacgaaattttccaatttggatatgattggtagaccagtggttgttcttgaaaagaccaatgctgtgcatgagcataaccaatatttccaggtctattacaggttcagcaatctgtcactgcttagagaaccaatgatgttaatttctggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68621" stop="71903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68921" g_stop="68989" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69075" g_stop="69222" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="217" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69294" g_stop="69470" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="394" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69688" g_stop="69756" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="463" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69757" i_stop="69852" i_length="96">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69853" g_stop="69942" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="553" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69943" i_stop="71540" i_length="1598">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71541" g_stop="71603" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="616" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E207348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68921" e_stop="68989"/>
          <exon e_start="69075" e_stop="69222"/>
          <exon e_start="69294" e_stop="69470"/>
          <exon e_start="69688" e_stop="69756"/>
          <exon e_start="69853" e_stop="69942"/>
          <exon e_start="71541" e_stop="71603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAGGTAATACTTCTATAAGAACTGAATAGGCTTTAATTCCATATTTATAATGATGTAATTTAGTGTTATCACAAGAATCTAAAATATAATTTATTTAGAAGATGATGATATATTTTGTGCAAAAGAGGGCTTATGGTATAGTGTGATTGTATGGGCCTTTAATTTTTTTTTTCTTGAAAAATTCTTCAAGATAATGATGGAATTGTTTTCTGGAGAACAGGTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGACGTATGAGTAAATCTTAGTTTTTCTCCTCTGAAGTTCCTCTTGTATGATAACCTTTATTCCTCTAACATTCTATTACTTCTTATGTTTTATTTGCAGACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAGGTTTATAAGTTTATCTACAATGCTGTTGAAAGAACTGTATGTGGGAAGCATTGCATATGATCCTAGCTTAGCCAAGTCCATTTTGGGCATGAGTTAACCGGGCGTAGGTAGAATAATTCAGTTTAGACAGAGCCTCAGATATAAGGATTAGACTTGGTTCAATCTGAAAGGTTGAATGGTGGAATTTGAGCCGAACCTGAGCTAGATCATCCAGAGAAACCTTTTGGATTTAAGATTCAACTTTTTAGTTGATGAGAGAAACGCATCCCCCCCCCCCCCCCCCCCAAGAAAAGGGAAGAAGAGAGACTAGAAAGAAAATTACAGTAGTGGTCCTACTGGCTATAAGATCTCCGGGCGAAATTTTGGCTGTTGGTCTATTATACAAGAACAAACTAATTACAATGGGGTACAGACATGGGTGGAATATCTTCTATGAAATGGAGATTTTACATATCAGACTGTAGGCTTTAAATGGTGCGTCATATCATATCTAGTCAAAGCAAGCATTTCAGCATATGTTTGCTTGCATCTGGCTTATTCACATGCTACCCTGTGCATATTTGTACTGGATCAAGTTATTTAGGACAAATATTATCATCCTCCAGAAGAAAGGATGATGGAATATTTAAATAAGAACCACTTGTATCCGTGCTTTTGTGACCAAGCAAAATTGTAATAATCGTGTTGAAACTTATCTCATTGAACTCAGAGCATAAGATAAGATCCCATCACATCATATCCCTAATATCGACTATGATATGTAACCTATCAATTTGATAGGCATATACTCACAATGATGTAACATGTTGGAGAGTATCAGTATAAATTTAAAGTTATTAATTAAGCCTTACATCTTTCACTCTGATTTAAATTTGGGGTTATTGGTTATTAGAAGCACAATTGTGTTGATTAATATTCCTTACTCTTTCTATTTTGGTCAATAAGAAAGCCCAGTATGGCTTACCTGAGCCCAGCTCATGACTTCAAGATCTCTTCTTGGTTATTCTACCTTAATGACTTAAAGTTCAGGTGTCTGGTTGGGGGGTTTAATGCCTGAAAGAAGTCTTCAGAAATCAAATAAGAAGAATGCTTGTCTCCTTTAAAGGGGATAAGGCTTGTTGAATCATGAATGTGTTTGGGATCTTGTCAGGGATCCATACTTCTTTCATTTCCTTTCCTTTTTGTGGTTTTCTTTTGGGATTGGGAATAATTAATGCTCGTTTCACCATTCTGAGGTTTCATTGACACCCATTATATAGAACTAGAGTTCAATTGCCATGCAGAAAGTTTCTGTCCTGATCTGGGAAAACAAATCTTTTCCTTCTTGCTATTTTCTTTTCAGCGACTGGATGGGCAATACCACACATTACAGCAATTCTTCTCCTTTTTCTATCTCACTTTTGGCTTTCTTTTTATGTAAAAAATATTTCTGGTTCACTTATGATGGCCTCTCTATCTGGGAATTAGAATTCTTAAAAATCTGATCATGTGCTATAGCTTGTGAGTAGAACTTTCCCTGCATGGCCTGGACCACATTAGTTTCCCTGTTTTTGGCTTATGTTTTGTGTAGGTACTGACTGACGAAGCTTTCGTGACAGGTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTT</genome_strand>
        <mrna_strand>AAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAG.........................................................................................................................................................................................................................GTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGAC................................................................................................ACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366010" ref_strand="+" ref_description="SGN-E366010 [cLPT-11-B10]">
      <seq>acatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgactcatcaaagacattgttacaaattgaacctaggtatccaatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttagggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttttggttgcccaattgaggaggtggttgttgaaaaccttgttgtgaaggttgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="68796" stop="69778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69096" g_stop="69222" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69294" g_stop="69470" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="304" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69688" g_stop="69695" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="312" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E366010" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69096" e_stop="69222"/>
          <exon e_start="69294" e_stop="69470"/>
          <exon e_start="69688" e_stop="69695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAGGTAATACTTCTATAAGAACTGAATAGGCTTTAATTCCATATTTATAATGATGTAATTTAGTGTTATCACAAGAATCTAAAATATAATTTATTTAGAAGATGATGATATATTTTGTGCAAAAGAGGGCTTATGGTATAGTGTGATTGTATGGGCCTTTAATTTTTTTTTTCTTGAAAAATTCTTCAAGATAATGATGGAATTGTTTTCTGGAGAACAGGTTGTACT</genome_strand>
        <mrna_strand>ACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGACTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCAATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAG.........................................................................................................................................................................................................................GTTGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260958" ref_strand="+" ref_description="SGN-E260958 [cLEG-55-B14]">
      <seq>acaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttagggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttttggttgcccaattgaggaggtggttgttgaaaaccttgttgtgaaggttgtactgccagaaggttcaaaggatatttctgtctcggtcccttttcctgtcaaagagtcaagagacacgaaattttccaatttggatatgattggtagaccagtggttgttcttgaaaagaccaatgctgtgcatgagcataaccaatatttccaggtctattacaggttcagcaatctgtcactgcttagagaaccaatgatgttaatttctggatttttcttcttattccttgcatgtatcatatatatgcatgcggacctaacaatctcaaagtcctctccttcttatcttgcaaaactgcagtgggatgaggtgcagactgctcttcagcagatccagagcataatgaaccattgtttgggcattcatgataaacttgaagcatcattacgagatctgtcaaggactggtgatgtgcaagcatgcaaagctgctcgtaaatcagctgataatatgttgaaggagcttttgaaggatttaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="69002" stop="72301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69302" g_stop="69470" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69688" g_stop="69756" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="238" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69757" i_stop="69852" i_length="96">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69853" g_stop="69942" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="328" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69943" i_stop="71540" i_length="1598">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71541" g_stop="71699" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="487" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71780" g_stop="72001" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="708" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E260958" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69302" e_stop="69470"/>
          <exon e_start="69688" e_stop="69756"/>
          <exon e_start="69853" e_stop="69942"/>
          <exon e_start="71541" e_stop="71699"/>
          <exon e_start="71780" e_stop="72001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAGGTAATACTTCTATAAGAACTGAATAGGCTTTAATTCCATATTTATAATGATGTAATTTAGTGTTATCACAAGAATCTAAAATATAATTTATTTAGAAGATGATGATATATTTTGTGCAAAAGAGGGCTTATGGTATAGTGTGATTGTATGGGCCTTTAATTTTTTTTTTCTTGAAAAATTCTTCAAGATAATGATGGAATTGTTTTCTGGAGAACAGGTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGACGTATGAGTAAATCTTAGTTTTTCTCCTCTGAAGTTCCTCTTGTATGATAACCTTTATTCCTCTAACATTCTATTACTTCTTATGTTTTATTTGCAGACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAGGTTTATAAGTTTATCTACAATGCTGTTGAAAGAACTGTATGTGGGAAGCATTGCATATGATCCTAGCTTAGCCAAGTCCATTTTGGGCATGAGTTAACCGGGCGTAGGTAGAATAATTCAGTTTAGACAGAGCCTCAGATATAAGGATTAGACTTGGTTCAATCTGAAAGGTTGAATGGTGGAATTTGAGCCGAACCTGAGCTAGATCATCCAGAGAAACCTTTTGGATTTAAGATTCAACTTTTTAGTTGATGAGAGAAACGCATCCCCCCCCCCCCCCCCCCCAAGAAAAGGGAAGAAGAGAGACTAGAAAGAAAATTACAGTAGTGGTCCTACTGGCTATAAGATCTCCGGGCGAAATTTTGGCTGTTGGTCTATTATACAAGAACAAACTAATTACAATGGGGTACAGACATGGGTGGAATATCTTCTATGAAATGGAGATTTTACATATCAGACTGTAGGCTTTAAATGGTGCGTCATATCATATCTAGTCAAAGCAAGCATTTCAGCATATGTTTGCTTGCATCTGGCTTATTCACATGCTACCCTGTGCATATTTGTACTGGATCAAGTTATTTAGGACAAATATTATCATCCTCCAGAAGAAAGGATGATGGAATATTTAAATAAGAACCACTTGTATCCGTGCTTTTGTGACCAAGCAAAATTGTAATAATCGTGTTGAAACTTATCTCATTGAACTCAGAGCATAAGATAAGATCCCATCACATCATATCCCTAATATCGACTATGATATGTAACCTATCAATTTGATAGGCATATACTCACAATGATGTAACATGTTGGAGAGTATCAGTATAAATTTAAAGTTATTAATTAAGCCTTACATCTTTCACTCTGATTTAAATTTGGGGTTATTGGTTATTAGAAGCACAATTGTGTTGATTAATATTCCTTACTCTTTCTATTTTGGTCAATAAGAAAGCCCAGTATGGCTTACCTGAGCCCAGCTCATGACTTCAAGATCTCTTCTTGGTTATTCTACCTTAATGACTTAAAGTTCAGGTGTCTGGTTGGGGGGTTTAATGCCTGAAAGAAGTCTTCAGAAATCAAATAAGAAGAATGCTTGTCTCCTTTAAAGGGGATAAGGCTTGTTGAATCATGAATGTGTTTGGGATCTTGTCAGGGATCCATACTTCTTTCATTTCCTTTCCTTTTTGTGGTTTTCTTTTGGGATTGGGAATAATTAATGCTCGTTTCACCATTCTGAGGTTTCATTGACACCCATTATATAGAACTAGAGTTCAATTGCCATGCAGAAAGTTTCTGTCCTGATCTGGGAAAACAAATCTTTTCCTTCTTGCTATTTTCTTTTCAGCGACTGGATGGGCAATACCACACATTACAGCAATTCTTCTCCTTTTTCTATCTCACTTTTGGCTTTCTTTTTATGTAAAAAATATTTCTGGTTCACTTATGATGGCCTCTCTATCTGGGAATTAGAATTCTTAAAAATCTGATCATGTGCTATAGCTTGTGAGTAGAACTTTCCCTGCATGGCCTGGACCACATTAGTTTCCCTGTTTTTGGCTTATGTTTTGTGTAGGTACTGACTGACGAAGCTTTCGTGACAGGTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAGGTATGCTAGTAGTAGTATAACTACTTATTTTGTGTCAATATTACAGAAAATAATTTTAATTTTTCCTTTGGTGTTTTCAGGTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCT</genome_strand>
        <mrna_strand>ACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAG.........................................................................................................................................................................................................................GTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGAC................................................................................................ACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAG................................................................................GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTT-AAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202182" ref_strand="+" ref_description="SGN-E202182 [cLEC-7-J19]">
      <seq>aaggttcaaaggatatttttgtctcggtcccttttcctgtcaaagagtcaagagacacgaaattttccaatttggatatgattggtagaccagtggttgttcttgaaaagaccaatgctgtgcatgagcataaccaatatttccaggtctattacaggttcagcaatctgtcactgcttagagaaccaatgatgttaatttctggatttttcttcttattccttgcatgtatcatatatatgcatgcggacctaacaatctcaaagtcctctccttcttatcttgcaaaactgcagtgggatgaggtgcagactgctcttcagcagatccagagcataatgaaccattgtttgggcattcatgataaacttgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="69401" stop="72151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69701" g_stop="69756" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69757" i_stop="69852" i_length="96">
            <donor d_prob="0.706" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69853" g_stop="69942" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="146" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69943" i_stop="71540" i_length="1598">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71541" g_stop="71699" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="305" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71780" g_stop="71851" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="377" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E202182" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69701" e_stop="69756"/>
          <exon e_start="69853" e_stop="69942"/>
          <exon e_start="71541" e_stop="71699"/>
          <exon e_start="71780" e_stop="71851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGACGTATGAGTAAATCTTAGTTTTTCTCCTCTGAAGTTCCTCTTGTATGATAACCTTTATTCCTCTAACATTCTATTACTTCTTATGTTTTATTTGCAGACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAGGTTTATAAGTTTATCTACAATGCTGTTGAAAGAACTGTATGTGGGAAGCATTGCATATGATCCTAGCTTAGCCAAGTCCATTTTGGGCATGAGTTAACCGGGCGTAGGTAGAATAATTCAGTTTAGACAGAGCCTCAGATATAAGGATTAGACTTGGTTCAATCTGAAAGGTTGAATGGTGGAATTTGAGCCGAACCTGAGCTAGATCATCCAGAGAAACCTTTTGGATTTAAGATTCAACTTTTTAGTTGATGAGAGAAACGCATCCCCCCCCCCCCCCCCCCCAAGAAAAGGGAAGAAGAGAGACTAGAAAGAAAATTACAGTAGTGGTCCTACTGGCTATAAGATCTCCGGGCGAAATTTTGGCTGTTGGTCTATTATACAAGAACAAACTAATTACAATGGGGTACAGACATGGGTGGAATATCTTCTATGAAATGGAGATTTTACATATCAGACTGTAGGCTTTAAATGGTGCGTCATATCATATCTAGTCAAAGCAAGCATTTCAGCATATGTTTGCTTGCATCTGGCTTATTCACATGCTACCCTGTGCATATTTGTACTGGATCAAGTTATTTAGGACAAATATTATCATCCTCCAGAAGAAAGGATGATGGAATATTTAAATAAGAACCACTTGTATCCGTGCTTTTGTGACCAAGCAAAATTGTAATAATCGTGTTGAAACTTATCTCATTGAACTCAGAGCATAAGATAAGATCCCATCACATCATATCCCTAATATCGACTATGATATGTAACCTATCAATTTGATAGGCATATACTCACAATGATGTAACATGTTGGAGAGTATCAGTATAAATTTAAAGTTATTAATTAAGCCTTACATCTTTCACTCTGATTTAAATTTGGGGTTATTGGTTATTAGAAGCACAATTGTGTTGATTAATATTCCTTACTCTTTCTATTTTGGTCAATAAGAAAGCCCAGTATGGCTTACCTGAGCCCAGCTCATGACTTCAAGATCTCTTCTTGGTTATTCTACCTTAATGACTTAAAGTTCAGGTGTCTGGTTGGGGGGTTTAATGCCTGAAAGAAGTCTTCAGAAATCAAATAAGAAGAATGCTTGTCTCCTTTAAAGGGGATAAGGCTTGTTGAATCATGAATGTGTTTGGGATCTTGTCAGGGATCCATACTTCTTTCATTTCCTTTCCTTTTTGTGGTTTTCTTTTGGGATTGGGAATAATTAATGCTCGTTTCACCATTCTGAGGTTTCATTGACACCCATTATATAGAACTAGAGTTCAATTGCCATGCAGAAAGTTTCTGTCCTGATCTGGGAAAACAAATCTTTTCCTTCTTGCTATTTTCTTTTCAGCGACTGGATGGGCAATACCACACATTACAGCAATTCTTCTCCTTTTTCTATCTCACTTTTGGCTTTCTTTTTATGTAAAAAATATTTCTGGTTCACTTATGATGGCCTCTCTATCTGGGAATTAGAATTCTTAAAAATCTGATCATGTGCTATAGCTTGTGAGTAGAACTTTCCCTGCATGGCCTGGACCACATTAGTTTCCCTGTTTTTGGCTTATGTTTTGTGTAGGTACTGACTGACGAAGCTTTCGTGACAGGTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAGGTATGCTAGTAGTAGTATAACTACTTATTTTGTGTCAATATTACAGAAAATAATTTTAATTTTTCCTTTGGTGTTTTCAGGTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCA</genome_strand>
        <mrna_strand>AAGGTTCAAAGGATATTTTTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGAC................................................................................................ACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAG................................................................................GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352635" ref_strand="+" ref_description="SGN-E352635 [cTOS-11-E7]">
      <seq>ttggtagaccagtggttgttcttgaaaagaccaatgctgtgcatgagcataaccaatatttccaggtctattacaggttcagcaatctgtcactgcttagagaaccaatgatgttaatttctggatttttcttcttattccttgcatgtatcatatatatgcatgcggacctaacaatctcaaagtcctctccttcttatcttgcaaaactgcagtgggatgaggtgcagactgctcttcagcagatccagagcataatgaaccattgtttgggcattcatgataaacttgaagcatcattacgagatctgtcaaggactggtgatgtgcaagcatgcaaagctgctcgtaaatcagctgataatatgttgaaggagcttttgaaggatttaaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="69578" stop="72300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69878" g_stop="69942" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69943" i_stop="71540" i_length="1598">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71541" g_stop="71699" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="224" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71780" g_stop="72000" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="445" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E352635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69878" e_stop="69942"/>
          <exon e_start="71541" e_stop="71699"/>
          <exon e_start="71780" e_stop="72000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAGGTTTATAAGTTTATCTACAATGCTGTTGAAAGAACTGTATGTGGGAAGCATTGCATATGATCCTAGCTTAGCCAAGTCCATTTTGGGCATGAGTTAACCGGGCGTAGGTAGAATAATTCAGTTTAGACAGAGCCTCAGATATAAGGATTAGACTTGGTTCAATCTGAAAGGTTGAATGGTGGAATTTGAGCCGAACCTGAGCTAGATCATCCAGAGAAACCTTTTGGATTTAAGATTCAACTTTTTAGTTGATGAGAGAAACGCATCCCCCCCCCCCCCCCCCCCAAGAAAAGGGAAGAAGAGAGACTAGAAAGAAAATTACAGTAGTGGTCCTACTGGCTATAAGATCTCCGGGCGAAATTTTGGCTGTTGGTCTATTATACAAGAACAAACTAATTACAATGGGGTACAGACATGGGTGGAATATCTTCTATGAAATGGAGATTTTACATATCAGACTGTAGGCTTTAAATGGTGCGTCATATCATATCTAGTCAAAGCAAGCATTTCAGCATATGTTTGCTTGCATCTGGCTTATTCACATGCTACCCTGTGCATATTTGTACTGGATCAAGTTATTTAGGACAAATATTATCATCCTCCAGAAGAAAGGATGATGGAATATTTAAATAAGAACCACTTGTATCCGTGCTTTTGTGACCAAGCAAAATTGTAATAATCGTGTTGAAACTTATCTCATTGAACTCAGAGCATAAGATAAGATCCCATCACATCATATCCCTAATATCGACTATGATATGTAACCTATCAATTTGATAGGCATATACTCACAATGATGTAACATGTTGGAGAGTATCAGTATAAATTTAAAGTTATTAATTAAGCCTTACATCTTTCACTCTGATTTAAATTTGGGGTTATTGGTTATTAGAAGCACAATTGTGTTGATTAATATTCCTTACTCTTTCTATTTTGGTCAATAAGAAAGCCCAGTATGGCTTACCTGAGCCCAGCTCATGACTTCAAGATCTCTTCTTGGTTATTCTACCTTAATGACTTAAAGTTCAGGTGTCTGGTTGGGGGGTTTAATGCCTGAAAGAAGTCTTCAGAAATCAAATAAGAAGAATGCTTGTCTCCTTTAAAGGGGATAAGGCTTGTTGAATCATGAATGTGTTTGGGATCTTGTCAGGGATCCATACTTCTTTCATTTCCTTTCCTTTTTGTGGTTTTCTTTTGGGATTGGGAATAATTAATGCTCGTTTCACCATTCTGAGGTTTCATTGACACCCATTATATAGAACTAGAGTTCAATTGCCATGCAGAAAGTTTCTGTCCTGATCTGGGAAAACAAATCTTTTCCTTCTTGCTATTTTCTTTTCAGCGACTGGATGGGCAATACCACACATTACAGCAATTCTTCTCCTTTTTCTATCTCACTTTTGGCTTTCTTTTTATGTAAAAAATATTTCTGGTTCACTTATGATGGCCTCTCTATCTGGGAATTAGAATTCTTAAAAATCTGATCATGTGCTATAGCTTGTGAGTAGAACTTTCCCTGCATGGCCTGGACCACATTAGTTTCCCTGTTTTTGGCTTATGTTTTGTGTAGGTACTGACTGACGAAGCTTTCGTGACAGGTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAGGTATGCTAGTAGTAGTATAACTACTTATTTTGTGTCAATATTACAGAAAATAATTTTAATTTTTCCTTTGGTGTTTTCAGGTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTC</genome_strand>
        <mrna_strand>TTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAG................................................................................GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369903" ref_strand="+" ref_description="SGN-E369903 [TUS-26-N7](-)">
      <seq>catgcggacctaacaatctcaaagtcctctccttcttatcttgcaaaactgcagtgggatgaggtgcagactgctcttcagcagatccagagcataatgaaccattgtttgggcattcatgataaacttgaagcatcattacgagatctgtcaaggactggtgatgtgcaagcatgcaaagctgctcgtaaatcagctgataatatgttgaaggagcttttgaaggatttaaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattctaaggttgaggatgttgttgcaaaggagaaagagctgcaggagaagctgatagtgaaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagtgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggatcaattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtagttgtagaattctaggttcttgccgaatctctttggttgacaatcaaatgagtgctgtagacaactgttttttcatatatattgagttgttaagtttatggttttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="71337" stop="72930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71637" g_stop="71699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71780" g_stop="72004" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="288" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72199" g_stop="72638" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="728" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E369903" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71637" e_stop="71699"/>
          <exon e_start="71780" e_stop="72004"/>
          <exon e_start="72199" e_stop="72638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAGGTATGCTAGTAGTAGTATAACTACTTATTTTGTGTCAATATTACAGAAAATAATTTTAATTTTTCCTTTGGTGTTTTCAGGTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAGGTTTGTCTATGTATTCTTTTCTTGCGGAAAGAATTTACCCATCATCTTGACAAAGATGGCCTACATTGAAGCACTCATAGATAGTCGACCCCATCTTATCTAATGAACTCCTTGTCATTGCAAACTTGGAATGACAACTTTATGGTCCTTAATCCATTGGTGCTAAAGCTATGTGGCTGTTTTATTTTATGAAGGTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAACGTAATTG</genome_strand>
        <mrna_strand>CATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAG................................................................................GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG..................................................................................................................................................................................................GTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351838" ref_strand="+" ref_description="SGN-E351838 [cTOS-8-C20]">
      <seq>ggatgaggtgcagactgctcttcagcagatccagagcataatgaaccattgtttgggcattcatgataaacttgaagcatcattacgagatctgtcaaggactggtgatgtgcaagcatgcaaagctgctcgtaaatcagctgataatatgttgaaggagcttttgaaggatttaaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattctaaggttgaggatgttgttgcaaaggagaaagagctgcaggagaagctgatagtgaaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagtgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggatcaattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtagatgtagaattctaggttcttgccgaatctctttggttgacaatcaaatgagtgctgtagacaactgttttttcatatatattgagttgctaagtttatggttttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="71476" stop="72930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71693" g_stop="71699" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71780" g_stop="72004" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="232" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72199" g_stop="72631" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="665" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="675"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E351838" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71693" e_stop="71699"/>
          <exon e_start="71780" e_stop="72004"/>
          <exon e_start="72199" e_stop="72631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGGTATGCTAGTAGTAGTATAACTACTTATTTTGTGTCAATATTACAGAAAATAATTTTAATTTTTCCTTTGGTGTTTTCAGGTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAGGTTTGTCTATGTATTCTTTTCTTGCGGAAAGAATTTACCCATCATCTTGACAAAGATGGCCTACATTGAAGCACTCATAGATAGTCGACCCCATCTTATCTAATGAACTCCTTGTCATTGCAAACTTGGAATGACAACTTTATGGTCCTTAATCCATTGGTGCTAAAGCTATGTGGCTGTTTTATTTTATGAAGGTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAC</genome_strand>
        <mrna_strand>GGATGAG................................................................................GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG..................................................................................................................................................................................................GTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGATGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGCTAAGTTTATGGTTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351681" ref_strand="+" ref_description="SGN-E351681 [cTOS-8-A18]">
      <seq>ggatgaggtgcagactgctcttcagcagatccagagcataatgaaccattgtttgggcattcatgataaacttgaagcatcattacgagatctgtcaaggactggagatgtgcaagcatgcaaagctgctcgtaaatcaactgataatatgttgaaggagcttttgaaggatttaaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattctaaggatgaggatgttgttgcaaaggagaaagagctgcaggagaagctgatagtgaaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagcgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggcatcattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtagttgtagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="71476" stop="72832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71693" g_stop="71699" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71780" g_stop="72004" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="232" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72199" g_stop="72532" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="566" r_length="334" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E351681" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71693" e_stop="71699"/>
          <exon e_start="71780" e_stop="72004"/>
          <exon e_start="72199" e_stop="72532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGGTATGCTAGTAGTAGTATAACTACTTATTTTGTGTCAATATTACAGAAAATAATTTTAATTTTTCCTTTGGTGTTTTCAGGTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAGGTTTGTCTATGTATTCTTTTCTTGCGGAAAGAATTTACCCATCATCTTGACAAAGATGGCCTACATTGAAGCACTCATAGATAGTCGACCCCATCTTATCTAATGAACTCCTTGTCATTGCAAACTTGGAATGACAACTTTATGGTCCTTAATCCATTGGTGCTAAAGCTATGTGGCTGTTTTATTTTATGAAGGTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATT</genome_strand>
        <mrna_strand>GGATGAG................................................................................GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGAGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAACTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG..................................................................................................................................................................................................GATGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGCGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGCATCATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552362" ref_strand="+" ref_description="SGN-E552362 [cTSB-3-K4]">
      <seq>cattcatgataaacttgaagcatcattacgagatctgtcaaggactggtgatgtgcaagcatgcaaagctgctcgtaaatcagctgataatatgttgaaggagcttttgaaggatttaaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattctaaggttgaggatgttgttgcaaaggagaaagagctgcaggagaagctgatagtgaaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagtgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggatcaattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtagttgtagaattctaggttcttgccgaatctctttggttgacaatcaaatgagtgctgtagacaactgttttttcatatatattgagttgttaagtttatggttttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="71530" stop="72930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71830" g_stop="72004" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72199" g_stop="72631" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="608" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="618"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E552362" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71830" e_stop="72004"/>
          <exon e_start="72199" e_stop="72631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAGGTTTGTCTATGTATTCTTTTCTTGCGGAAAGAATTTACCCATCATCTTGACAAAGATGGCCTACATTGAAGCACTCATAGATAGTCGACCCCATCTTATCTAATGAACTCCTTGTCATTGCAAACTTGGAATGACAACTTTATGGTCCTTAATCCATTGGTGCTAAAGCTATGTGGCTGTTTTATTTTATGAAGGTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAC</genome_strand>
        <mrna_strand>CATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG..................................................................................................................................................................................................GTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262777" ref_strand="-" ref_description="SGN-E262777 [cLEG-63-F22]">
      <seq>caaggactggtgatgtgcaagcatgcaaagctgctcgtaaatcagctgataatatgttgaaggagcttttgaaggatttaaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattctaaggttgaggatgttgttgcaaaggagaaagagctgcaggagaagctgatagtgaaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagtgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggatcaattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtagttgtagaattctaggttcttgccgaatctctttggttgacaatcaaatgagtgctgtagacaactgttttttcatatatattgagttgttaagtttatggttttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="71568" stop="72930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71868" g_stop="72004" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72199" g_stop="72631" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="570" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="584"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E262777" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262777" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71868" e_stop="72004"/>
          <exon e_start="72199" e_stop="72631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAGGTTTGTCTATGTATTCTTTTCTTGCGGAAAGAATTTACCCATCATCTTGACAAAGATGGCCTACATTGAAGCACTCATAGATAGTCGACCCCATCTTATCTAATGAACTCCTTGTCATTGCAAACTTGGAATGACAACTTTATGGTCCTTAATCCATTGGTGCTAAAGCTATGTGGCTGTTTTATTTTATGAAGGTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAC</genome_strand>
        <mrna_strand>CAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG..................................................................................................................................................................................................GTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396153" ref_strand="+" ref_description="SGN-E396153 [TUS-41-M19]">
      <seq>tttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttctattacgtattttgacattctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72913" stop="78461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73213" g_stop="73436" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="452" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="551" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78161" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="747" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E396153" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73213" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATT</genome_strand>
        <mrna_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390183" ref_strand="+" ref_description="SGN-E390183 [TUS-41-K19]">
      <seq>tttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72913" stop="78360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73213" g_stop="73436" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="452" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="551" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78060" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="646" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E390183" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73213" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATG</genome_strand>
        <mrna_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391174" ref_strand="+" ref_description="SGN-E391174 [TUS-47-L20]">
      <seq>tttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcatttgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72913" stop="78333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73213" g_stop="73436" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="452" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="552" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78033" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="620" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E391174" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73213" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCA-TTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGT</genome_strand>
        <mrna_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393105" ref_strand="+" ref_description="SGN-E393105 [TUS-38-B15]">
      <seq>tttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggataccaagtcattgaaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72913" stop="78326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73213" g_stop="73436" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="452" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="552" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78026" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="613" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E393105" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73213" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTG-AAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAAT</genome_strand>
        <mrna_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACCAAGTCATTGAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373545" ref_strand="+" ref_description="SGN-E373545 [TUS-31-N6]">
      <seq>ttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacngcataattgttcagttagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72914" stop="78384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73214" g_stop="73436" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="298" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="451" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="550" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78084" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="669" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E373545" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73214" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGAC-GCATAAATTGTTCAGTTAGAG</genome_strand>
        <mrna_strand>TTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACNGCAT-AATTGTTCAGTTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292395" ref_strand="+" ref_description="SGN-E292395 [cLET-1-H21]">
      <seq>ttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72914" stop="78359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73214" g_stop="73436" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="298" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="451" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="550" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78059" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="644" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E292395" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73214" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGAT</genome_strand>
        <mrna_strand>TTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296690" ref_strand="+" ref_description="SGN-E296690 [cLET-39-F8]">
      <seq>ttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72914" stop="76911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73214" g_stop="73436" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="298" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="451" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E296690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73214" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG</genome_strand>
        <mrna_strand>TTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299354" ref_strand="+" ref_description="SGN-E299354 [cLET-43-A17]">
      <seq>ttatacagtctggttatccattcccagctgaagcaactcttccattcatatatgtctagggtttaaccagttgggggttgggggattcttctaccttgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72922" stop="78300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73222" g_stop="73436" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="290" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="443" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="542" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78000" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="577" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E299354" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73222" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGAC</genome_strand>
        <mrna_strand>TTATACAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATGTCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACCTTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723188" ref_strand="+" ref_description="SGN-E723188 [FC19CG11]">
      <seq>ggccgattggaagcaactcttcccttctatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttctattacgtattttgacattctatcattgcaaaaaggcacattaccttgtgtaaaatctggttttgagtattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72951" stop="78508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73242" g_stop="73436" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="269" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="422" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="521" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78208" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="764" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E723188" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73242" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTT</genome_strand>
        <mrna_strand>GGCCGATTGGAAGCAACTCTTCCCTTC-TATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAAATCTGGTTTTGAGTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333112" ref_strand="+" ref_description="SGN-E333112 [cTOD-19-H15]">
      <seq>atatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattngaaaggtaaatcattttgctaatctttcagtagtgtactccgtctcccatcttcccaccaatcattagtgttgaaacaaatgtagagatatggttttgtgannatggtcacttgagcttctctagctctcatcataaatgcatggcattgtcttgtacctttgaatctcataaatgaatatagtatatactatagtggtttgatactacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72969" stop="77847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73269" g_stop="73436" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="243" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="396" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77547" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="702" r_length="306" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E333112" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73269" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGG-TTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATT</genome_strand>
        <mrna_strand>ATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTNGAAAGGTAAATCATTTTGCTAATCTTTCAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATC-ATTAGTGTTGAAACAAATGTAGAGATATGGTTTTGTGANNATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGGTTTGATACTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334323" ref_strand="+" ref_description="SGN-E334323 [cTOD-21-M4]">
      <seq>atatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtaaatcattttgctaatcttcaagtagtgtactccgtctcccatcttcccaccaatcaattagtgttgaaacaaatgtagagatatggtttgtgaaaatggtcacttgagcttctctagctctcatcataaatgcatggcattgtcttgtacctttgaatctcataatgaatatagtatatactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72969" stop="77829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73269" g_stop="73436" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="243" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="396" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77529" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="683" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E334323" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73269" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATA</genome_strand>
        <mrna_strand>ATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCAT-AATGAATATAGTATATACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715860" ref_strand="+" ref_description="SGN-E715860 [FB15BH07]">
      <seq>ggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttctattacgtattttgacattctatcattgcaaaaaggcacattaccttgtgtaagatctggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaactcatgaaaattacctttcatttgtgtaaaaaattttgctccccatgtatgcttgtctgcattgcctcatctactgtgaagttaaagctaatacatatgattcgggagctgtgtttctgcaaaaaaaaaaaaaaaan</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72981" stop="78664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73281" g_stop="73436" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="231" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="384" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="483" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78361" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="879" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="882" polyA_stop="898"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E715860" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73281" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCATGTATGCTTGTCTGCATTGCCTCATCTACTGTGAAGTTAAAGCTAATACATATGATTCGGGAGCTGTGTTTCT</genome_strand>
        <mrna_strand>GGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAAAAATTTTGCTCCCCATGTATGCTTGTCTGCATTGCCTCATCTACTGTGAAGTTAAAGCTAATACATATGATTCGGGAGCTGTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242116" ref_strand="+" ref_description="SGN-E242116 [cLED-37-E22]">
      <seq>gttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72991" stop="77574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73291" g_stop="73436" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="221" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="374" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77274" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="407" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E242116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73291" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGG</genome_strand>
        <mrna_strand>GTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348541" ref_strand="+" ref_description="SGN-E348541 [cTOF-30-D8]">
      <seq>ggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttctattacgtattttgacattctatcattgcaaaaaggcacattaccttgtggtagaatctggttnntgagtattgttaacagagatagtgccattgcaatacaaaattgaaactcatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="73004" stop="78553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73304" g_stop="73436" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="208" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="361" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="460" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78253" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="750" r_length="290" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E348541" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73304" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGT-GTAAGATCTGGTT-TTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAA</genome_strand>
        <mrna_strand>GGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGGTAGAATCTGGTTNNTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359154" ref_strand="+" ref_description="SGN-E359154 [cLHT-11-G13]">
      <seq>aggggtttaacctagttgggggattcttctaccagtgaagaaccacctgcatttaaccagaaaatggagagcctcaccttcgttatgccggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcaccccatttgcagggtcatgccgaactagaccaccaaaattggagcccccaccttatctctgtgctatgataaggcaatacctttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatcctgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttggaatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72998" stop="78356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73318" g_stop="73436" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="159" r_length="124" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="237" r_length="78" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="0.88"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="390" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="489" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78056" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="580" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E359154" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73318" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAC-ACCTGCATTTAA-CAGAAAATGGAGAG-CTCA-CTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCA-CCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGA-CACCAAAATTGGAG-CACCAACTTATCTCTGTGCTATGATAAGGCAATA-CTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACT</genome_strand>
        <mrna_strand>TGAAGAACCACCTGCATTTAACCAGAAAATGGAGAGCCTCACCTTCGTTATGCCGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCCGAACTAGACCACCAAAATTGGAGCCCCCACCTTATCTCTGTGCTATGATAAGGCAATACCTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATCCTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGAATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357495" ref_strand="+" ref_description="SGN-E357495 [cTOS-23-G14]">
      <seq>aaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaccatcatccttcatctgtgtttctattacgtattttgacattctatcattgcaaaaaggcacatttaccttgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="73041" stop="78486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73341" g_stop="73436" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="171" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="324" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="423" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78186" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="644" r_length="221" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E357495" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73341" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACA-TTACCTTGTGTA</genome_strand>
        <mrna_strand>AAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAG-AAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTTACCTTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295661" ref_strand="+" ref_description="SGN-E295661 [cLET-25-D17]">
      <seq>gtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="73086" stop="77622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73386" g_stop="73436" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="126" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="279" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77322" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="360" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E295661" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73386" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGA</genome_strand>
        <mrna_strand>GTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390397" ref_strand="+" ref_description="SGN-E390397 [TUS-41-M19](-)">
      <seq>attcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgttatgataaggcaatactttcctgatcaatatgttagtcttgctgtgggagtgcaatattataggcggcaaaagttttggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggaggaaaaacttttggagaaaaagtcgagagttgttgctgaatttacttgggatttcatggatgtgaaaaaagagcaagatgtgaggttcaaagttggataggaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggattttcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattattgatggacgcataaattgttcagttagagtggttataattgttagaaagaagaaaaccttcttccttcatctgtgtttttattaggtattttgacattttatcattgcaaaaaggcacattcccttgtgtaagatttggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaattcatgaaaattccctttcatttgtgtaagaaattttgctccccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="73089" stop="78588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73389" g_stop="73436" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="123" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="276" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.720" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="375" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78289" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="699" r_length="324" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="722"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E390397" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73389" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAT</genome_strand>
        <mrna_strand>ATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGTTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGTTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGTTTTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGAGGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGTTGCTGAATTTACTTGGGATTTCATGGATGTGAAAAAAGAGCAAGATGTGAGGTTCAAAGTTGGATAGGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGATTTTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTATTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGTTAGAAAGAAGAAAACCTTCTTCCTTCATCTGTGTTTTTATTAGGTATTTTGACATTTTATCATTGCAAAAAGGCACATTCCCTTGTGTAAGATTTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAATTCATGAAAATTCCCTTTCATTTGTGTAAGAAATTTTGCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373544" ref_strand="+" ref_description="SGN-E373544 [TUS-31-N6](-)">
      <seq>ttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctttgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctttggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactttcactgtcaacaatattgggaaatggaaagtaaaatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctaaaaagaagaaaaccatcatccttcatttgtgtttttattacgtattttgacattctatcattgcaaaaaggcacattaccttgtgtaagatttggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaactcatgaaaattacctttcatttgtgtaagaaattttgctccccaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="74473" stop="78588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74773" g_stop="74863" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="243" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="342" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77966" g_stop="78289" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="666" r_length="324" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E373544" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74773" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAT</genome_strand>
        <mrna_strand>TTC-ACCCATTTGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTTTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTTTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTTTCACTGTCAACAATATTGGGAAATGGAAAGTAAAATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAAAAAGAAGAAAACCATCATCCTTCATTTGTGTTTTTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATTTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349798" ref_strand="+" ref_description="SGN-E349798 [cTOS-3-J6]">
      <seq>tcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagaccaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttctattacgtattttgacattctatcattgcaaaaaggcacattaccttgtgtaagatctggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaactcatgaaaattacctttcatttgtgtaagaattttgctccccatgtatgcttgtctgcattgcctcatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="74491" stop="78618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74791" g_stop="74863" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="226" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="325" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77966" g_stop="78318" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="677" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E349798" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74791" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCATGTATGCTTGTCTGCATTGCCTCATCTACT</genome_strand>
        <mrna_strand>TCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAG-AATTTTGCTCCCCATGTATGCTTGTCTGCATTGCCTCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390390" ref_strand="+" ref_description="SGN-E390390 [TUS-41-K19](-)">
      <seq>ttgtgttatgataaggcaatactttcctgatcaatatgttagtcttgctgtgggagtgcaatattataggcggcaaaagttttggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggaggaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggttcaaagttggataggaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttttattacgtattttgacattttatcattgcaaaaaggcacattaccttgtgtaagatctggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaattcatgaaaattacctttcatttgtgtaagaaattttgctccccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="74534" stop="78588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74833" g_stop="74863" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="184" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="283" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77966" g_stop="78289" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="607" r_length="324" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="630"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E390390" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74833" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAT</genome_strand>
        <mrna_strand>TTGTGTTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGTTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGTTTTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGAGGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGTTCAAAGTTGGATAGGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTTTATTACGTATTTTGACATTTTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAATTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391173" ref_strand="+" ref_description="SGN-E391173 [TUS-47-L20](-)">
      <seq>caatattataggcggcaaaagttctgggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactttcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttttattacgtattttgacattttatcattgcaaaaaggcacattaccttgtgtaagatctggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaattcatgaaaattacctttcatttgtgtaagaaattttgctccccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="76186" stop="78588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76486" g_stop="76611" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="226" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77966" g_stop="78289" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="550" r_length="324" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="573"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E391173" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76486" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTATAGGCGGCAAAAGCTCT-GGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAT</genome_strand>
        <mrna_strand>CAATATTATAGGCGGCAAAAGTTCTGGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTTTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTTTATTACGTATTTTGACATTTTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAATTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393357" ref_strand="+" ref_description="SGN-E393357 [TUS-38-B15](-)">
      <seq>aaaaaagaatttccagtgacggcaaataattcggttaattttcttattaagggcaagtacgacccggccgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatttcatggatgtgaaaaaagagcaagatgtgaggttcaaagttggataggaagtcataaaaaaggtcccttactttcagtttagtgaaaacaactggattttcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattattgatggaggcataaattgttcagttagagtggttataattgttagaaagaagaaaaccttcatccttcatctgtgtttttattacgtattttgacattttatcattgcaaaaaggcacattcccttgtgtaagatttggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaattcatgaaaattgcctttcatttgtgtaagaaattttgttccccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="76228" stop="78588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76528" g_stop="76611" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="0.88"/>
            <acceptor a_prob="0.720" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="183" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77966" g_stop="78289" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="507" r_length="324" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="530"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E393357" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76528" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAT</genome_strand>
        <mrna_strand>AAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAATTTTCTTATTAAGGGCAAGTACGACCCGGCCGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATTTCATGGATGTGAAAAAAGAGCAAGATGTGAGGTTCAAAGTTGGATAGGAAGTCATAAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGATTTTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTATTGATGGAGGCATAAATTGTTCAGTTAGAGTGGTTATAATTGTTAGAAAGAAGAAAACCTTCATCCTTCATCTGTGTTTTTATTACGTATTTTGACATTTTATCATTGCAAAAAGGCACATTCCCTTGTGTAAGATTTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAATTCATGAAAATTGCCTTTCATTTGTGTAAGAAATTTTGTTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538237" ref_strand="+" ref_description="SGN-E538237 [TUS-57-E18](-)">
      <seq>tagcaattgcaatgcggttcatggatgtggctggcagaaggtcgctgctgctgtacactattcctgttctcatactatcactcatctgtcttgtcattggtaacactgtcaacctggggagtgtagctcatgcagtcgtttctactatttgcgtgattctctacttttgtttctttgtgacgggctatggacccatcccaaatatcctctgctcagaaatttttccaactagggttcgtggtttgtgcatcgccatctgtgctctcgtcttctggatatgtgatgtcattgtgacttacacactgcctgtgatgctcaactcgattggtttatctggcgtgtttggtatttatgccattgtctgtgtcatttcttggattttcgtcttcttaagggttcccgaaaccaaaggcatgcccttagaagtcattacagagttctttgctgttggtgcaagacaagctgctgctatcgcaaagcatgagtagttagttttaaggtatcttctgtccgatttactacaagtatgtagtaaaatttgtagaaaataaaaaaatgttatcctctctaggtgtcctccattttacatccatctggtactggcatttctcaatagttattactgctatatttgtccaccattttgagatgtccaaattagtatctttctttttaaaaaaaaaaaaaggaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="85488" stop="83531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85188" g_stop="85149" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85148" i_stop="84465" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84464" g_stop="83845" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="660" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E538237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85188" e_stop="85149"/>
          <exon e_start="84464" e_stop="83845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAGGTAATGTTCTCTTGATTCCTTTCTTCTGCATTAGATTAAGGATGGTTTTGGTTATGTCCTCAAGATTTATTGCTGGAAAATCCATGAAATATGTGCAGTGAGTCTCGATTTGCATGTAGGACCATATCTTTTCCTTATATTGGCTGTAGTAGTCTCCTCGGAATTTTTCCAAGCCATATATATATATATATATCCAAGGTTGGAAAATCGATGCCCTATCTTCCATGAGACTAAATTTCAAATTGGTTAGTTTTTGAGTTTGTGTTTCATGACAGGTAGTATTCCCTCTATCCAATTTACACCACAAAGATGACATCATTCTGTAAATAATTAGTTACTCAAAGTTTATACATCTCAATAATTCAAATTCAATAAACTAATCCAGTTTAGATGTAGATGAGATGTTCTCTGTCTAACCAACTTTTCGACTAGTATTACTTAATATATTTTCTGTTTACTGCTTGACAATACACAAGCCATATATCATCTTAAACTTGTTTGAAAATGTTTTTCCTTGAGTCGAGGGTCTATCGAAACAACCTCTCTACCTTCCTATCCTCCCTAGACGCCACTAGTGGTGTGTATGTTGTTGTTGATTGATTATAATAAAAAAAATACAAACTCTTCATCGTTGTATTGTTTATTTTATGCTGTAGAATGTGTCATTAAAATGATAACTTGCAGGTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTTTTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTAGGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTCAATAGTTATTACTGCTATATTTGTCCACCATTTTGAGATGTCCAAATTA</genome_strand>
        <mrna_strand>TAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTTTTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTAGGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTCAATAGTTATTACTGCTATATTTGTCCACCATTTTGAGATGTCCAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353755" ref_strand="+" ref_description="SGN-E353755 [cTOS-10-P17]">
      <seq>aggtgtaggagttcttctttctaactttggcatcgcatcagactcagcatccttcctcatcagtgcgttaacaaacttcctgatgctcccttctgtagcaattgcaatgcggttcatggatgtggctggcagaaggtcgctgctgctgtacactattcctgttctcatactatcactcatctgtcttgtcattggtaacactgtcaacctggggagtgtagctcatgcagtcgtttctactatttgcgtgattctctactattgtttctttgtgacgggctatggacccatcccaaatatcctctgctcagaaatttttccaactagggttcgtggtttgtgcatcgccatctgtgctctcgtcttctggatatgtgatgtcattgtgacttacacactgcctgtgatgctcaactcgattggtttatctggcgtgtttggtatttatgccattgtctgtgtcatttcttggattttcgtcttcttaagggttcccgaaaccaaaggcatgcccttagaagtcattacagagttctttgctgttggtgcaagacaagctgctgctatcgcaaagcatgagtagttagttttaaggtatcttctgtccgatttactacaagtatgtagtaaaatttgtagaaaataaaaaaatgttatcctctctangtgtcctccattttacatccatctggtactggcatttctncatagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="85583" stop="83586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85283" g_stop="85149" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85148" i_stop="84465" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84464" g_stop="83878" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="722" r_length="587" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E353755" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85283" e_stop="85149"/>
          <exon e_start="84464" e_stop="83878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAGGTAATGTTCTCTTGATTCCTTTCTTCTGCATTAGATTAAGGATGGTTTTGGTTATGTCCTCAAGATTTATTGCTGGAAAATCCATGAAATATGTGCAGTGAGTCTCGATTTGCATGTAGGACCATATCTTTTCCTTATATTGGCTGTAGTAGTCTCCTCGGAATTTTTCCAAGCCATATATATATATATATATCCAAGGTTGGAAAATCGATGCCCTATCTTCCATGAGACTAAATTTCAAATTGGTTAGTTTTTGAGTTTGTGTTTCATGACAGGTAGTATTCCCTCTATCCAATTTACACCACAAAGATGACATCATTCTGTAAATAATTAGTTACTCAAAGTTTATACATCTCAATAATTCAAATTCAATAAACTAATCCAGTTTAGATGTAGATGAGATGTTCTCTGTCTAACCAACTTTTCGACTAGTATTACTTAATATATTTTCTGTTTACTGCTTGACAATACACAAGCCATATATCATCTTAAACTTGTTTGAAAATGTTTTTCCTTGAGTCGAGGGTCTATCGAAACAACCTCTCTACCTTCCTATCCTCCCTAGACGCCACTAGTGGTGTGTATGTTGTTGTTGATTGATTATAATAAAAAAAATACAAACTCTTCATCGTTGTATTGTTTATTTTATGCTGTAGAATGTGTCATTAAAATGATAACTTGCAGGTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTTTTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTAGGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTCAATAGTTATTACTGCT</genome_strand>
        <mrna_strand>AGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTATTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTANGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTNCATAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697944" ref_strand="+" ref_description="SGN-E697944 [FA04DB05]">
      <seq>ccgattatccttcggatggcggtgcagattctgatgacaatctacaaagtccattgatatcacgtcaaacaaccgctgtggaaaccgtagtccctcatccccatggcagcactatgagcgtgaggcggcatagcagcctaatgcaaggcaatgctggagagggtgtaggcagcatgggcattggtggtggttggcagttggcatggaaatggtctgaaagggaaggtgaagatggaattaaagaaggaggcttcaaaaggatatatttgcatcaggaggcgggccctagctctcgacgtgggtctctcgtttcagttcctggtggcgatattcatgaagatggtgaattcatacaagctgcggctttggtaagtcagcctgcactttactctaaggaacttatggatcagcatcctgtgggaccagcaatggtccatccatctgaaactgcttcaaaaggtccgagttgggctgctcttcttgaaccaggagtcaagcgagcgctcatagttggaattggaattcaaatattgcaacagttctctggtataaatggagtcatgtactacactcctcaaatccttgagcaggcaggtgtaggagttcttctttctaactttggcatcgcatcagactcagcatccttcctcatcagtgcgttaacaaacttcctgatgctcccttctgtaacaattgcaatgcggttcatggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="86763" stop="84860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86465" g_stop="85927" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85926" i_stop="85337" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85336" g_stop="85160" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="716" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E697944" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86465" e_stop="85927"/>
          <exon e_start="85336" e_stop="85160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCAGTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTTGGAATTGGAATTCAAATATTGCAACAGGTAAAGTATTATTCTTTCGTCATTCTGTTGCTTCTTTTGGTTGTTTTACTAGGATTAAATTTGATAGCTACAAAATTTCAGCATGCTGTGTTTGAATGTATACGAAATGGACTTAGTTTTATATATTATATCCTTGAGTTGAGAATTCTGTTTCTTCTTTAAATATAAGTATCTTGGGGTTGTGATTGTGATTAGCATAGGATCATGTAAGGATTACATGACCAAACTAGACAGTACATCCTCATATCATTTATCTGGAAGCAGATACAAAGTTTTAAGAAAATATTTTGGTGTGTTTTATCTGAAGCATTATTATAATCGCAACAAACATTTCTACAGTTTTTTTTTTTTGTGTTTAGTTCAACTTTGTTGATAGGGTGGGGATGAGTTATTTTCTCCATTAGTGTATTTTCCTTTGTTATCTTTACGGAGTCTCTTCTTCTGTATTTACTTCATTATGTAGTTTTTATACTGAGAACTACCTTGTAATTAATAATCCCAAATTATTGAGGCAAAACTGTGCGCTCACTGTCATTAGACAACAAGGCTTGGAATGTTGCCATCTTACGACTGTAATATTTTATCTGCAGTTCTCTGGTATAAATGGAGTCATGTACTACACTCCTCAAATCCTTGAGCAGGCAGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAGCAATTGCAATGCGGTTCATGGATGTG</genome_strand>
        <mrna_strand>CCGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCACTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTTGGAATTGGAATTCAAATATTGCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTGGTATAAATGGAGTCATGTACTACACTCCTCAAATCCTTGAGCAGGCAGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAACAATTGCAATGCGGTTCATGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538238" ref_strand="+" ref_description="SGN-E538238 [TUS-57-E18]">
      <seq>tcatatcaagttgtacggcccagaggaaggcctctcgtgggtggccaagccagttactggacagagtagtctagctcttgtgtccaggcaagggagcatggtgcagcagagtgtgcctcttatggatcctcttgtgactctatttggtagtgtccatgagaagctccctgatacaggaagtatgaggagcatgctattccccaatttcggaagcatgatcagcaccatggatcctcatgtcaaagatgatcactgggatgaggagagtctgcagagagaaggtgatgattatccttcggatggcggtgcagattctgatgacaatctacaaagtccattgatatcacgtcaaacaaccgctgtggaaaccgtagtccctcatccccatggcagcactatgagcgtgaggcggcatagcagcctaatgcaaggcaatgctggagagggtgtaggcagcatgggcattggtggtggttggcagttggcatggaaatggtctgaaagggaaggtgaagatggaattaaagaaggaggcttcaaaaggatatatttgcatcaggaggcgggccctagctctcgacgtgggtctctcgtttcagttcctggtggcgatattcatgaagatggtgaattcatacaagctgcggctttggtaagtcagcctgcagtttactctaaggaacttatggatcagcatcctgtgggaccagcaatggtccatccatctgaaactgcttcaaaaggtccgagttgggctgctcttcttgaaccaggagtcaagcgagcgctcatagttgggaatgggaattcaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="87049" stop="85635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86749" g_stop="85935" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E538238" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86749" e_stop="85935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCAGTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTT-GGAATTGGAATTCAAATAT</genome_strand>
        <mrna_strand>TCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCAGTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTTGGGAATGGGAATTCAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726646" ref_strand="+" ref_description="SGN-E726646 [LA12BG02]">
      <seq>cggaatctcctcgatggctagtcagtaaaggaagaatggtcgaggcaaaacaagttttgcagaaattgcgtggcatagaggatgtttcaggggagatggcattgcttgttgagggtttggctgttggcattgaaccatcaatagaagagtatatcattggtccagctgatgagcttactgaggatcaggacctggctactgacaaagatcatatcaagttgtacggcccagaggaaggcctctcgtgggtggccaagccagttactggacagagtagtctagctcttgtgtccaggcaagggagcatggtgcagcagagtgtgcctcttatggatcctcttgtgactctatttggtagtgtccatgagaagctccctgatacaggaagtatgaggagcatgctattccccaatttcggaagcatgatcagcaccatggatcctcatgtcaaagatgatcactgggatgaggagagtctgcagagagaaggtgatgattatccttcggatggcggtgcagattctgatgacaatctacaaagtccattgatatcacgtcaaacaaccgctgtggaaaccgtagtccctcatccccatggcagcactatgagcgtgaggcggcatagcagcctaatgcaaggcaatgctggagagggtgtaggcagcatgggcattggtggtggttggcagttggcatggaaatggtctgaaagggaacgtgaagatggaattaaagaaggaggcttcaaaaggatatatttgcatcaagaggcgggccctagctctcgacgtgggtctctcgtttcaattcctggtggcgatattcatgaagatggtgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="87961" stop="85816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87661" g_stop="87572" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87571" i_stop="86868" i_length="704">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86867" g_stop="86116" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="842" r_length="752" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E726646" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87661" e_stop="87572"/>
          <exon e_start="86867" e_stop="86116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCTCCTCGATGGCTAGTCAGTAAAGGAAGAATGGTCGAGGCAAAACAAGTTTTGCAGAAATTGCGTGGCATAGAGGATGTTTCAGGTATGCTATCTGCTATTCTTTGGGAACATTTCCCTTTTGTGTCAGCTGGCTGTTTAAATATTCAGAACATGTTGACTGTGGATTGTGCTTTCTCAGGGATTTTATTAGATCGTTGAAAGTAGTGGTATGAATATTTAGTATAACTCTTTTTGTAACGTTCATACTGATTTCACAATCTGCTATGGAGTAGCTCCCTAAATAGGAATGCATCTAAACTTGAGTTTCCTCTATTATTTATCGTTCTCCATTTTTTACCCCTCTTAACTATCCACTATTCAGTCAGTGCCTATCTTTGTCAAATTCTTTTCAAAGTTTATTTTTTTAATGAAAAATGACAGATTTGCTTATTGATTTGTAATCACTCATTTTCTATATTTTCTTTCTCCCAGATTCTACTATCTTTCATGAATTATTTTAGTTACTTCCATATAAGTGAGAAATCAGGATCTGGAGAACACTCATTATATCATACCATATCAAAACACAACGCCATCCAATATTCCCTGATTCCTTCCTTTTAGGTTTTATTTCCTTGGAGGCAATAAGGCTCACCATCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTGGTTCTCTAGTCAGTAGAACACTCTTCTTTTAAGTTCTTTCATATTCATCTCGTGATTCCTATTTGTTAAAGACACTGATTTCATCATATTGATTTTGTTAACTATTCTGTGCATAGGGGAGATGGCATTGCTTGTTGAGGGTTTGGCTGTTGGCATTGAACCATCAATAGAAGAGTATATCATTGGTCCAGCTGATGAGCTTACTGAGGATCAGGACCTGGCTACTGACAAAGATCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTC</genome_strand>
        <mrna_strand>CGGAATCTCCTCGATGGCTAGTCAGTAAAGGAAGAATGGTCGAGGCAAAACAAGTTTTGCAGAAATTGCGTGGCATAGAGGATGTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGATGGCATTGCTTGTTGAGGGTTTGGCTGTTGGCATTGAACCATCAATAGAAGAGTATATCATTGGTCCAGCTGATGAGCTTACTGAGGATCAGGACCTGGCTACTGACAAAGATCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAACGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAAGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAATTCCTGGTGGCGATATTCATGAAGATGGTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269139" ref_strand="+" ref_description="SGN-E269139 [cLEI-16-O5]">
      <seq>catatcaagttgtacggcccagaggaaggcctctcgtgggtggccaagccagttactggacagagtagtctagctcttgtgtccaggcaagggagcatggtgcagcagagtgtgcctcttatggatcctcttgtgactctatttggtagtgtccatgagaagctccctgatacaggaagtatgaggagcatgctattccccaatttcggaagcatgatcagcaccatggatcctcatgtcaaagatgatcactgggatgaggagagtctgcagagagaaggtgatgattatccttcggatggcggtgcaaattctgatgacaatctacaaagtccattggtatcacgtcaaacaaccgctgtggaaaccgtagtccctcatccccatggcaactctatgagcgtgaggcggcatagcaacctaatgcaaggcaatgctggagagggtgtaggcagcatgggcattggtggtggttggcaattggcatggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="87048" stop="85955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86748" g_stop="86255" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E269139" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86748" e_stop="86255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATG</genome_strand>
        <mrna_strand>CATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAAATTCTGATGACAATCTACAAAGTCCATTGGTATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAACTCTATGAGCGTGAGGCGGCATAGCAACCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAATTGGCATGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311101" ref_strand="+" ref_description="SGN-E311101 [cLEZ-16-E14]">
      <seq>aaaaacgaacgaacatggctcttttctcttttacaaaattttcactacttgttttattttcaatttctctcctggcctgcacctcattggctcgcgatcattccatcgttggatactcctctgatgacttgacttgcatcgataagctcataaatctctttgataaatggatggataaacatggaaagatttataagagcattgaagagaaattacataggtttgagattttcaaggaaaatttgaagcatattgatgaaaggaataaaatggttaccaactattggcttggtctaaatgagttctctgatttgagccatgatgagtttaaggaaatgtatttaggactgaaagttgatcaagagttgcttaataaaagagagaaattatctcaagaagaatttgcgtatagagattttgttgatttgcctaagtctgtggattggaggaaaaaaggtgctgttacccctgtgaagaaccagggtcaatgtgggagttgttgggcattttcaacggtggctgcagtagagggaattaaccaaataaaaacagggaatttgacatccttgtctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="93576" stop="94816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93876" g_stop="94367" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94368" i_stop="94433" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94434" g_stop="94516" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="575" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E311101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93876" e_stop="94367"/>
          <exon e_start="94434" e_stop="94516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTGGTAAGTTGCGTCTTTTGGTTTCACAATAATTATGTTCAGATAATTAGTGTGACTGTATGTATGTAGGGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</genome_strand>
        <mrna_strand>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTG..................................................................GGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338064" ref_strand="+" ref_description="SGN-E338064 [cTOE-14-L8]">
      <seq>tcttttacaaaattttcactacttgttttattttcaatttctctcctggcctgcacctcattggctcgcgatcattccatcgttggatactcctctgatgacttgacttgcatcgataagctcataaatctctttgataaatggatggataaacatggaaagatttataagagcattgaagagaaattacataggtttgagattttcaaggaaaatttgaagcatattgatgaaaggaataaaatggttaccaactattggcttggtctaaatgagttctctgatttgagccatgatgagtttaaggaaatgtatttaggactgaaagttgatcaagagttgcttaataaaagagagaaattatctcaagaagaatttgcgtatagagattttgttgatttgcctaagtctgtggattggaggaaaaaaggtgctgttacccctgtgaagaaccagggtcaatgtgggagttgttgggcattttcaacggtggctgcagtagagggaattaaccaaataaaaacagggaatttgacatccttgtctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="93602" stop="94817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93902" g_stop="94367" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94368" i_stop="94433" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94434" g_stop="94517" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="550" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E338064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93902" e_stop="94367"/>
          <exon e_start="94434" e_stop="94517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTGGTAAGTTGCGTCTTTTGGTTTCACAATAATTATGTTCAGATAATTAGTGTGACTGTATGTATGTAGGGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAAC</genome_strand>
        <mrna_strand>TCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTG..................................................................GGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717057" ref_strand="+" ref_description="SGN-E717057 [FB18DC03]">
      <seq>gcggcgttcaattttggctacgaatctcttcaaaggagagggcttcagtgagggagcttacttgcttggtacagctgtaaaacatgaatccaaatgaatctgcaaagtctcatgccaaacccgatatcattctgactgggactgcaaaaacatgtccaattggaccgccacttggtttggttgacataggcagtagtgataatgcatatatttttcgtgttgcgcttcctggtgtaaggcataaatgtaatatccaatttgacatacagagagaagggagagtccggatagaaggtgtgattacagagagtgaggctttgaaaaactcactcaagggttatgagatgaaagttcagcagcttccttcccctgggccttttaccatatcgttcaatttgccaggacctgttgatcccagattatgttccccgcagtttagaaccgatggcattttggaagtcattgtgatgaaatatcagatacctttggtttcagcagaaggtttgcctgagaattggtacaatggctctttcccagctccttgaattctatttggtccacaatccctatgacacatgagaatcctacttactctacaactcttgtattgaatataacatggcatcagcaacgacttctcaacttctaggtagccatacctgtacaccaagggattttgcattatatgttccattttggcaatgttgacttgttttttgaatcaactgtactttatggcaaaaaaaaaaaaaacttgggagcattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="99142" stop="95677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98842" g_stop="98791" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97304" g_stop="97111" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="246" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96499" g_stop="95977" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="769" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="770" polyA_stop="782"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E717057" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98842" e_stop="98791"/>
          <exon e_start="97304" e_stop="97111"/>
          <exon e_start="96499" e_stop="95977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAGGCAAGTTTATCTCTTTCAATTTTTGTTTGCTAGTTATTTTTTTTAATTAGGGTTTTTTCTGGGATTTTACATTAGTGGATTTGTTGTTTTGTGTGATGTTTTTGGTTCTCCTACTTTGGTGCTACTGATTAGGCAAATGCTGGAGGTTTTTTCAGGAAAGGGCCATACTTTATGTGATGCTTCCCTTTTCATGTTAAAGACTGATATAAGAGTGTTAAAAATCCTATCTTTCATGATTGTTTTCTCATCTTTGGCTTAGGCTGTCCTAATGAGTGAAATGGGGGAGTAACCTTATGATTTAATTGTTTGCTCGGGTGCAGTGTGTTTCATCAACGCTAAAATGGTCACCACAGTAAATTTCCTGTCTCTTTGTGGCTTGTTTGTATTTACAAGACTTTGCAGAAAAAATCTGTTGTCTTTAAACTAACATAAATTTGAAATGTCCAGTTCCTACCTGCTACGGCTAAACACTTCGTCATTATGATGGTCAGCTGTAGATGGTGTCTCTTTTGTTTGAAGAATGTAATCGAGTCTTTAGGTTAAGTCAGTGGAGATTCCCTCAAATAAGGATAGGAACTTTTTCTGGAGTAAATAAATCAACTTATATATTAGATCTGTAGCATCTTTTAGCCTCTATATATATGTAAACATGGACTTGCAGATTGATGTTATAAATTAAGGACCCTGCAGCTTGTTCCACTGCTGATTTCTCTTCAGGAGTTGATGCATGTAAAACTGTTGTAGTTTGTGGAGGTGTTGAGGAGGATCGAGCGCTGCAATTATTTTGTAGCAGACTTCATTAAGTTTCATGCAATGTCTGTCAGGAGGCTTAATTTGTTAGAAATTTGTTTGTAAGGGTAATGGACAAAATCTATGGAACTTAAATCTTATTAGTACTCCCTCTGTCCCAAAGTAGATGAGCACTTTTTATTTTACATGGTGATTAAGAAGTCATTAGTAGATTGATCTACTTTACTATTACCCTTTGTTCATATTAATTAGCCTCTTGAAAAAAGAAATTCTTGGATCTTTAAAATATGGGACAAATACTTTGAGTAAGCTGCCCTACTAATATGGGACGGTGGAAGTACTGATTTTCCATATAGGCAAAATATTTTAGGAGTGGAATGAAAACACAGTTGAATAGGATAGAATAAATACATATGATTCAAACAACTAGGACCAACTAATATCGGATTTGAAGCATATTTGAATGATTGGGGCTATTTCTTTTTTCTTGTCAAAATCACACTCATCCTCAGATCTTTTTTTTTATTCAATCCTACAAAGTGAATGTGAACTTTAATACATATGCAAATGCATCAGTAGTCAAATTCTCTATGCTCTAATCCCTGAGGCTAATTCTCTGTCTTATAGCCTGCAGGAAGATCTTGCTTGACACATGTTTAAGCAAGAATTTAGAAATCTGCAGAGCCACCTCACACTTTTTCCCCTGAAGCTAAAGTCGTTATCTTATAAACTGCAGGGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAATGTAAGTACTTTTAAATTCCTCTGTAGGTTAATTGTTACTATTGTCTATTTTTTAGAGTGGGTATAGTTAATGGGTGCAACTAGGGATGGCAATGGTGGTGGTGCGGGTCGGGTTGAGCTTGCCCCACATCTGCTCTGCCCCATTTCCATCTCTAGGTGCAACACTGATTATTTGATGCATACACATACTTAAATCTCTTTGATCATAATATGATGATTCTGAAATGAGTCATTCCTAGAAATTGGAATATAAGAATGTATTACAAACACTTGCTATCAATCAATCAAAATTCAGCTACACGGCTACATTAAGTAATTGGGGTTGGTTGGGTAAGTCCCCTGAATTATAAGCACTTGCTATGCAGTGGTAAAATGATTGTAACATTAGGTTTTCGTAAAGTAGCATTTGCAAATTTCGTGCAGGAGTATCATCTATATTTTATATTAAAAGCAAGAGTCCTCAAATTATTAAAGTTGTAGATTCTAAAATCGATCACAGTTTTATCAACTTATAGCAATGCCGTACACTTGACTAGTATACTTAATGTGAAGGTAAGCAAAAAATTTATTTTCTGGAATTTAACAATCAATTGATGTGTATATACTGTACAGGTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTATATGTTCCATTTTGGCAATGTTGACTTGTTTTTTGAATCAACTGTACTTTATGGCAAAAAAAAAAAAAACTTGGGAGCATTGACA</genome_strand>
        <mrna_strand>GCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTATATGTTCCATTTTGGCAATGTTGACTTGTTTTTTGAATCAACTGTACTTTATGGCAAAAAAAAAAAAAACTTGGGAGCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345500" ref_strand="+" ref_description="SGN-E345500 [cTOF-18-G3]">
      <seq>agagcggcgttcaattttggctacgaatctcttcaaaggagagggcttcagtgagggagcttacttgcttggtacagctgtaaaacatgaatccaaatgaatctgcaaagtctcatgccaaacccgatatcattctgactgggactgcaaaaacatgtccaattggaccgccacttggtttggttgacataggcagtagtgataatgcatatatttttcgtgttgcgcttcctggtgtaaggcataaatgtaatatccaatttgacatacagagagaagggagagtccggatagaaggtgtgattacagagagtgaggctttgaaaaactcactcaagggttatgagatgaaagttcagcagcttccttcccctgggccttttaccatatcgttcaatttgccaggacctgttgatcccagattatgttccccgcagtttagaaccgatggcattttggaagtcattgtgatgaaatatcagatacctttggtttcagcagaaggtttgcctgagaattggtacaatggctctttcccagctccttgaattctatttggtccacaatccctatgacacatgagaatcctacttactctacaactcttgtattgaatataacatggcatcagcaacgacttctcaacttctaggtagccatacctgtacaccaagggattttgcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="99145" stop="95761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98845" g_stop="98791" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97304" g_stop="97111" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="249" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96499" g_stop="96061" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="688" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E345500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98845" e_stop="98791"/>
          <exon e_start="97304" e_stop="97111"/>
          <exon e_start="96499" e_stop="96061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAGGCAAGTTTATCTCTTTCAATTTTTGTTTGCTAGTTATTTTTTTTAATTAGGGTTTTTTCTGGGATTTTACATTAGTGGATTTGTTGTTTTGTGTGATGTTTTTGGTTCTCCTACTTTGGTGCTACTGATTAGGCAAATGCTGGAGGTTTTTTCAGGAAAGGGCCATACTTTATGTGATGCTTCCCTTTTCATGTTAAAGACTGATATAAGAGTGTTAAAAATCCTATCTTTCATGATTGTTTTCTCATCTTTGGCTTAGGCTGTCCTAATGAGTGAAATGGGGGAGTAACCTTATGATTTAATTGTTTGCTCGGGTGCAGTGTGTTTCATCAACGCTAAAATGGTCACCACAGTAAATTTCCTGTCTCTTTGTGGCTTGTTTGTATTTACAAGACTTTGCAGAAAAAATCTGTTGTCTTTAAACTAACATAAATTTGAAATGTCCAGTTCCTACCTGCTACGGCTAAACACTTCGTCATTATGATGGTCAGCTGTAGATGGTGTCTCTTTTGTTTGAAGAATGTAATCGAGTCTTTAGGTTAAGTCAGTGGAGATTCCCTCAAATAAGGATAGGAACTTTTTCTGGAGTAAATAAATCAACTTATATATTAGATCTGTAGCATCTTTTAGCCTCTATATATATGTAAACATGGACTTGCAGATTGATGTTATAAATTAAGGACCCTGCAGCTTGTTCCACTGCTGATTTCTCTTCAGGAGTTGATGCATGTAAAACTGTTGTAGTTTGTGGAGGTGTTGAGGAGGATCGAGCGCTGCAATTATTTTGTAGCAGACTTCATTAAGTTTCATGCAATGTCTGTCAGGAGGCTTAATTTGTTAGAAATTTGTTTGTAAGGGTAATGGACAAAATCTATGGAACTTAAATCTTATTAGTACTCCCTCTGTCCCAAAGTAGATGAGCACTTTTTATTTTACATGGTGATTAAGAAGTCATTAGTAGATTGATCTACTTTACTATTACCCTTTGTTCATATTAATTAGCCTCTTGAAAAAAGAAATTCTTGGATCTTTAAAATATGGGACAAATACTTTGAGTAAGCTGCCCTACTAATATGGGACGGTGGAAGTACTGATTTTCCATATAGGCAAAATATTTTAGGAGTGGAATGAAAACACAGTTGAATAGGATAGAATAAATACATATGATTCAAACAACTAGGACCAACTAATATCGGATTTGAAGCATATTTGAATGATTGGGGCTATTTCTTTTTTCTTGTCAAAATCACACTCATCCTCAGATCTTTTTTTTTATTCAATCCTACAAAGTGAATGTGAACTTTAATACATATGCAAATGCATCAGTAGTCAAATTCTCTATGCTCTAATCCCTGAGGCTAATTCTCTGTCTTATAGCCTGCAGGAAGATCTTGCTTGACACATGTTTAAGCAAGAATTTAGAAATCTGCAGAGCCACCTCACACTTTTTCCCCTGAAGCTAAAGTCGTTATCTTATAAACTGCAGGGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAATGTAAGTACTTTTAAATTCCTCTGTAGGTTAATTGTTACTATTGTCTATTTTTTAGAGTGGGTATAGTTAATGGGTGCAACTAGGGATGGCAATGGTGGTGGTGCGGGTCGGGTTGAGCTTGCCCCACATCTGCTCTGCCCCATTTCCATCTCTAGGTGCAACACTGATTATTTGATGCATACACATACTTAAATCTCTTTGATCATAATATGATGATTCTGAAATGAGTCATTCCTAGAAATTGGAATATAAGAATGTATTACAAACACTTGCTATCAATCAATCAAAATTCAGCTACACGGCTACATTAAGTAATTGGGGTTGGTTGGGTAAGTCCCCTGAATTATAAGCACTTGCTATGCAGTGGTAAAATGATTGTAACATTAGGTTTTCGTAAAGTAGCATTTGCAAATTTCGTGCAGGAGTATCATCTATATTTTATATTAAAAGCAAGAGTCCTCAAATTATTAAAGTTGTAGATTCTAAAATCGATCACAGTTTTATCAACTTATAGCAATGCCGTACACTTGACTAGTATACTTAATGTGAAGGTAAGCAAAAAATTTATTTTCTGGAATTTAACAATCAATTGATGTGTATATACTGTACAGGTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTAT</genome_strand>
        <mrna_strand>AGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309719" ref_strand="+" ref_description="SGN-E309719 [cLEY-26-M24]">
      <seq>ctgaagtagagcggcgttcaattttggctaccgaatctcttcaaaggagagggccttcagtgagggagccttaccttgcttggtaccagctgtaaaacatgaatccaaatgaatctgcaaagtctcatgcccaaacccgatatcattctgacctgggacctgcaaaaacatgtccaattggacccgccaccttggtttggttgaccataggccagtagtgataatgcatatatttttcgtgttgcgccttcctggtgtaaggcataaatgtaatatccaatttgacataccagagagaagggagagtccggatagaaggtgtgattaccagagagtgaggctttgaaaaactcactcaagggttatgagatgaaagttcagcagcttccttcccctgggccttttaccatatcgttcaatttgccaggacctgttgatcccagattatgttccccgcagtttagaaccgatggcattttggaagtcattgtgatgaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="99152" stop="95970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98852" g_stop="98791" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.827" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97304" g_stop="97111" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="269" r_length="205" r_score="0.887"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96499" g_stop="96270" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="501" r_length="232" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E309719" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98852" e_stop="98791"/>
          <exon e_start="97304" e_stop="97111"/>
          <exon e_start="96499" e_stop="96270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTAGAGCGGCGTTCAATTTTGGCTA-CGAATCTCTTCAAAGGAGAGGG-CTTCAGTGAGGCAAGTTTATCTCTTTCAATTTTTGTTTGCTAGTTATTTTTTTTAATTAGGGTTTTTTCTGGGATTTTACATTAGTGGATTTGTTGTTTTGTGTGATGTTTTTGGTTCTCCTACTTTGGTGCTACTGATTAGGCAAATGCTGGAGGTTTTTTCAGGAAAGGGCCATACTTTATGTGATGCTTCCCTTTTCATGTTAAAGACTGATATAAGAGTGTTAAAAATCCTATCTTTCATGATTGTTTTCTCATCTTTGGCTTAGGCTGTCCTAATGAGTGAAATGGGGGAGTAACCTTATGATTTAATTGTTTGCTCGGGTGCAGTGTGTTTCATCAACGCTAAAATGGTCACCACAGTAAATTTCCTGTCTCTTTGTGGCTTGTTTGTATTTACAAGACTTTGCAGAAAAAATCTGTTGTCTTTAAACTAACATAAATTTGAAATGTCCAGTTCCTACCTGCTACGGCTAAACACTTCGTCATTATGATGGTCAGCTGTAGATGGTGTCTCTTTTGTTTGAAGAATGTAATCGAGTCTTTAGGTTAAGTCAGTGGAGATTCCCTCAAATAAGGATAGGAACTTTTTCTGGAGTAAATAAATCAACTTATATATTAGATCTGTAGCATCTTTTAGCCTCTATATATATGTAAACATGGACTTGCAGATTGATGTTATAAATTAAGGACCCTGCAGCTTGTTCCACTGCTGATTTCTCTTCAGGAGTTGATGCATGTAAAACTGTTGTAGTTTGTGGAGGTGTTGAGGAGGATCGAGCGCTGCAATTATTTTGTAGCAGACTTCATTAAGTTTCATGCAATGTCTGTCAGGAGGCTTAATTTGTTAGAAATTTGTTTGTAAGGGTAATGGACAAAATCTATGGAACTTAAATCTTATTAGTACTCCCTCTGTCCCAAAGTAGATGAGCACTTTTTATTTTACATGGTGATTAAGAAGTCATTAGTAGATTGATCTACTTTACTATTACCCTTTGTTCATATTAATTAGCCTCTTGAAAAAAGAAATTCTTGGATCTTTAAAATATGGGACAAATACTTTGAGTAAGCTGCCCTACTAATATGGGACGGTGGAAGTACTGATTTTCCATATAGGCAAAATATTTTAGGAGTGGAATGAAAACACAGTTGAATAGGATAGAATAAATACATATGATTCAAACAACTAGGACCAACTAATATCGGATTTGAAGCATATTTGAATGATTGGGGCTATTTCTTTTTTCTTGTCAAAATCACACTCATCCTCAGATCTTTTTTTTTATTCAATCCTACAAAGTGAATGTGAACTTTAATACATATGCAAATGCATCAGTAGTCAAATTCTCTATGCTCTAATCCCTGAGGCTAATTCTCTGTCTTATAGCCTGCAGGAAGATCTTGCTTGACACATGTTTAAGCAAGAATTTAGAAATCTGCAGAGCCACCTCACACTTTTTCCCCTGAAGCTAAAGTCGTTATCTTATAAACTGCAGGGAG-CTTA-CTTGCTTGGTA-CAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATG-CCAAACCCGATATCATTCTGA-CTGGGA-CTGCAAAAACATGTCCAATTGGA-CCGCCA-CTTGGTTTGGTTGA-CATAGG-CAGTAGTGATAATGCATATATTTTTCGTGTTGCG-CTTCCTGGTGTAAGGCATAAATGTAAGTACTTTTAAATTCCTCTGTAGGTTAATTGTTACTATTGTCTATTTTTTAGAGTGGGTATAGTTAATGGGTGCAACTAGGGATGGCAATGGTGGTGGTGCGGGTCGGGTTGAGCTTGCCCCACATCTGCTCTGCCCCATTTCCATCTCTAGGTGCAACACTGATTATTTGATGCATACACATACTTAAATCTCTTTGATCATAATATGATGATTCTGAAATGAGTCATTCCTAGAAATTGGAATATAAGAATGTATTACAAACACTTGCTATCAATCAATCAAAATTCAGCTACACGGCTACATTAAGTAATTGGGGTTGGTTGGGTAAGTCCCCTGAATTATAAGCACTTGCTATGCAGTGGTAAAATGATTGTAACATTAGGTTTTCGTAAAGTAGCATTTGCAAATTTCGTGCAGGAGTATCATCTATATTTTATATTAAAAGCAAGAGTCCTCAAATTATTAAAGTTGTAGATTCTAAAATCGATCACAGTTTTATCAACTTATAGCAATGCCGTACACTTGACTAGTATACTTAATGTGAAGGTAAGCAAAAAATTTATTTTCTGGAATTTAACAATCAATTGATGTGTATATACTGTACAGGTAATATCCAATTTGACATA-CAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTA-CAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATAT</genome_strand>
        <mrna_strand>CTGAAGTAGAGCGGCGTTCAATTTTGGCTACCGAATCTCTTCAAAGGAGAGGGCCTTCAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCCTTACCTTGCTTGGTACCAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCCAAACCCGATATCATTCTGACCTGGGACCTGCAAAAACATGTCCAATTGGACCCGCCACCTTGGTTTGGTTGACCATAGGCCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCCTTCCTGGTGTAAGGCATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATATCCAATTTGACATACCAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACCAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307881" ref_strand="+" ref_description="SGN-E307881 [cLEY-20-E6]">
      <seq>gcgttcaattttggctacgaatctcttcaaaggagagggcttcagtgagggagcttacttgcttggtacagctgtaaaacatgaatccaaatgaatctgcaaagtctcatgccaaacccgatatcattctgactgggactgcaaaaacatgtccaattggaccgccacttggtttggttgacataggcagtagtgataatgcatatatttttcgtgttgcgcttcctggtgtaaggcataaatgtaatatccaatttgacatacagagagaagggagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="99139" stop="96163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98839" g_stop="98791" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97304" g_stop="97111" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="243" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96499" g_stop="96463" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="280" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E307881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98839" e_stop="98791"/>
          <exon e_start="97304" e_stop="97111"/>
          <exon e_start="96499" e_stop="96463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAGGCAAGTTTATCTCTTTCAATTTTTGTTTGCTAGTTATTTTTTTTAATTAGGGTTTTTTCTGGGATTTTACATTAGTGGATTTGTTGTTTTGTGTGATGTTTTTGGTTCTCCTACTTTGGTGCTACTGATTAGGCAAATGCTGGAGGTTTTTTCAGGAAAGGGCCATACTTTATGTGATGCTTCCCTTTTCATGTTAAAGACTGATATAAGAGTGTTAAAAATCCTATCTTTCATGATTGTTTTCTCATCTTTGGCTTAGGCTGTCCTAATGAGTGAAATGGGGGAGTAACCTTATGATTTAATTGTTTGCTCGGGTGCAGTGTGTTTCATCAACGCTAAAATGGTCACCACAGTAAATTTCCTGTCTCTTTGTGGCTTGTTTGTATTTACAAGACTTTGCAGAAAAAATCTGTTGTCTTTAAACTAACATAAATTTGAAATGTCCAGTTCCTACCTGCTACGGCTAAACACTTCGTCATTATGATGGTCAGCTGTAGATGGTGTCTCTTTTGTTTGAAGAATGTAATCGAGTCTTTAGGTTAAGTCAGTGGAGATTCCCTCAAATAAGGATAGGAACTTTTTCTGGAGTAAATAAATCAACTTATATATTAGATCTGTAGCATCTTTTAGCCTCTATATATATGTAAACATGGACTTGCAGATTGATGTTATAAATTAAGGACCCTGCAGCTTGTTCCACTGCTGATTTCTCTTCAGGAGTTGATGCATGTAAAACTGTTGTAGTTTGTGGAGGTGTTGAGGAGGATCGAGCGCTGCAATTATTTTGTAGCAGACTTCATTAAGTTTCATGCAATGTCTGTCAGGAGGCTTAATTTGTTAGAAATTTGTTTGTAAGGGTAATGGACAAAATCTATGGAACTTAAATCTTATTAGTACTCCCTCTGTCCCAAAGTAGATGAGCACTTTTTATTTTACATGGTGATTAAGAAGTCATTAGTAGATTGATCTACTTTACTATTACCCTTTGTTCATATTAATTAGCCTCTTGAAAAAAGAAATTCTTGGATCTTTAAAATATGGGACAAATACTTTGAGTAAGCTGCCCTACTAATATGGGACGGTGGAAGTACTGATTTTCCATATAGGCAAAATATTTTAGGAGTGGAATGAAAACACAGTTGAATAGGATAGAATAAATACATATGATTCAAACAACTAGGACCAACTAATATCGGATTTGAAGCATATTTGAATGATTGGGGCTATTTCTTTTTTCTTGTCAAAATCACACTCATCCTCAGATCTTTTTTTTTATTCAATCCTACAAAGTGAATGTGAACTTTAATACATATGCAAATGCATCAGTAGTCAAATTCTCTATGCTCTAATCCCTGAGGCTAATTCTCTGTCTTATAGCCTGCAGGAAGATCTTGCTTGACACATGTTTAAGCAAGAATTTAGAAATCTGCAGAGCCACCTCACACTTTTTCCCCTGAAGCTAAAGTCGTTATCTTATAAACTGCAGGGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAATGTAAGTACTTTTAAATTCCTCTGTAGGTTAATTGTTACTATTGTCTATTTTTTAGAGTGGGTATAGTTAATGGGTGCAACTAGGGATGGCAATGGTGGTGGTGCGGGTCGGGTTGAGCTTGCCCCACATCTGCTCTGCCCCATTTCCATCTCTAGGTGCAACACTGATTATTTGATGCATACACATACTTAAATCTCTTTGATCATAATATGATGATTCTGAAATGAGTCATTCCTAGAAATTGGAATATAAGAATGTATTACAAACACTTGCTATCAATCAATCAAAATTCAGCTACACGGCTACATTAAGTAATTGGGGTTGGTTGGGTAAGTCCCCTGAATTATAAGCACTTGCTATGCAGTGGTAAAATGATTGTAACATTAGGTTTTCGTAAAGTAGCATTTGCAAATTTCGTGCAGGAGTATCATCTATATTTTATATTAAAAGCAAGAGTCCTCAAATTATTAAAGTTGTAGATTCTAAAATCGATCACAGTTTTATCAACTTATAGCAATGCCGTACACTTGACTAGTATACTTAATGTGAAGGTAAGCAAAAAATTTATTTTCTGGAATTTAACAATCAATTGATGTGTATATACTGTACAGGTAATATCCAATTTGACATACAGAGAGAAGGGAGAGT</genome_strand>
        <mrna_strand>GCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342646" ref_strand="+" ref_description="SGN-E342646 [cTOF-7-F23]">
      <seq>ttgatggaagcaactttgttttcccctgcgcgctgcaaaggtgaattttatatgcaccattatagtagctttgaggctgattcaagcgtaaaaaactaatcagatgtccgagttcttcgattaggccttcagtgcctgctctgtttgtaccagccaattggaggcaagaagctgatgagactttggaggattccttcgtcaccttcacttgaaaattttgactttcttattgctctttgtaaaggaacacattgattacacagggtatattgaacggatcaaggtgttttttgtcccaaacagacttgaggtggttccagttttgtacgtggacatggttagcttgtaatcatcattaaaaccaaattcctattctgaaaaatccctacttataactcttgtatgtatctttcttttttgcataaattcagctgaggctatctggaactcttgtaatcagtcaatttctgttgcttttgattataatagtggaacttttgcgttaagttggttacttgggtcattcaatgaaattcttactatgaggccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="100048" stop="98896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99748" g_stop="99199" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="561"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E342646" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99748" e_stop="99199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGAAGCAACTTTGTTTTCCCCTGCGCGCTGCAAAGGTGAATTTTATATGCACCATTATAGTAGCTTTGAGGCTGATTCAAGCGTAAAAAACTAATCAGATGTCCGAGTTCTTCGATTAGGCCTTCAGTGCCTGCTCTGTTTGTACCAGCCAATTGGAGGCAAGAAGCTGATGATACTTTGGAGGATTCCTTCGTCACCTTCACTTGAAAATTTTGACTTTCTTATTGCTCTTTGTAAAGGAACACATTGATTACACAGGGTATATTGAACGGATCAAGGTGTTTTTTGTCCCAAACAGACTTGAGGTGGTTCCAGTTTTGTACGTGGACATGGTTAGCTTGTAATCATCATTAAAACCAAATTCCTATTCTGAAAAATCCCTACTTATAACTCTTGTATGTATCTTTCTTTTTTGCATAAATTCAGCTGAGGCTATCTGGAACTCTTGTAATCAGTCAATTTCTGTTGCTTTTGATATATAATAGTGGAACTTTTGCGTTAAGTTGGTTACTTGGGTCATTCAATGAAATTCTTACTATGAGGCC</genome_strand>
        <mrna_strand>TTGATGGAAGCAACTTTGTTTTCCCCTGCGCGCTGCAAAGGTGAATTTTATATGCACCATTATAGTAGCTTTGAGGCTGATTCAAGCGTAAAAAACTAATCAGATGTCCGAGTTCTTCGATTAGGCCTTCAGTGCCTGCTCTGTTTGTACCAGCCAATTGGAGGCAAGAAGCTGATGAGACTTTGGAGGATTCCTTCGTCACCTTCACTTGAAAATTTTGACTTTCTTATTGCTCTTTGTAAAGGAACACATTGATTACACAGGGTATATTGAACGGATCAAGGTGTTTTTTGTCCCAAACAGACTTGAGGTGGTTCCAGTTTTGTACGTGGACATGGTTAGCTTGTAATCATCATTAAAACCAAATTCCTATTCTGAAAAATCCCTACTTATAACTCTTGTATGTATCTTTCTTTTTTGCATAAATTCAGCTGAGGCTATCTGGAACTCTTGTAATCAGTCAATTTCTGTTGCTTTTGAT-TATAATAGTGGAACTTTTGCGTTAAGTTGGTTACTTGGGTCATTCAATGAAATTCTTACTATGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727764" ref_strand="+" ref_description="SGN-E727764 [LA15CF12]">
      <seq>cgattgcataaaacatggctgttgcaacataaagtttgaaaaagcttgggtgttcaatgaataggaattagttttggagttggataactgttgaatgcttacagtatgtttctgatgaaagatatggtgaacatggaaagtcagtaaatgtcaaacatggaatgcttacatcctaaaaagaagattaagagaatactttggaagcggtccaaggagaaatcgaatggggaagactctgctggaaatggtacatcattgatgaagatggaacacaatgtgacaaagaggcatcattctgattcaatgaccagtggtgtagacaggccttgcatgatgtcacttctccctcttcccaacttggaatattgtaactcggggggccctgctatcttgacaggaacggcatgcaaaggggtagctggaccacctgttggagttgttgatatcggtgttagcatatctgcttactattttcgtattgctctacctggagtcaagaaagatcctggtgagttcaactgtgagattgaaaaagatgggaaggtccttattcggggggtgacatcaactggtggaagaaccgtatcaagatattctcgggtctttgatatgaaaattcagcaacaatgtccatctggtcctttcaccgtctcctttcgtttgcccgggcctgtcgatccgaggttgttttcaccaaatttcagatcagatggcatttttgaagctgttgtaatgaaatacgagcagtagctagttcatgtaaacaaccattaaagtcagaacccaccacagaaagctgtctgctcttgnatttcttgttatgattagtggtgggctgaaagctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="106330" stop="102869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106032" g_stop="105968" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105967" i_stop="105015" i_length="953">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105014" g_stop="104572" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="508" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104571" i_stop="103510" i_length="1062">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103509" g_stop="103169" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="849" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E727764" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106032" e_stop="105968"/>
          <exon e_start="105014" e_stop="104572"/>
          <exon e_start="103509" e_stop="103169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGCATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGGGTTAAAAAGCTCTTACTCTTTTGCTTAGTTTATATCTTTGTTTTAGATTTTCTGTAAACTGACTGACTATTCTGTTTGTCAAGTTACTGAGTTATGTTCTGAACTAACTAATAGTAATGACGAGTTGGTTGATAGATTTGAACATGAAGTGGCTCATGCTTGCAGTTATAGGTAGTCGCTGATTTTGTTAACGTTCCAATTGTAACCAGAAAATCCCATTCCCTAGGGCACACTAAACCTCTTTTTGACCCAAGTAGTTTTTGTCCCACTCAGGCTAGGCATGTGGATTGAACAAATAACTGATTTTCCTATTGTTTTAGTGCCAGTAATTAAATGTATATGCCTATTATAATGTCACGAACTTACTTACTTCTCCAATTTTCCTCTAATTTATGTTTTCAACTGTTAGTAAGGTTGACACCAGCCTAGGAGTTAGTTTCTTCTATTTGAATCCCTCCTCTCTCCATATGTGCTGGTGACATGTGTGTAAACCAGGGATTAATGGCTTATAGAACATCTAGGGATTTGGTTAATGCTTTACATTTAGTAGCTTGCTTATGCTCAGTGGTTTAGTAGCTTGTAGAACATCTGTTGATCCTGGAGGTTCAGTTAATGCTTTACACTAAGTAGCTTGCTTATGTTCAGGGTCAGTTCCAGTTAAACCTGTCAATAAACTCACCTCATCTCTCTTTTCTTTATTTTATTGGCCTCTTGACACTGGGTATTGCCATAGCATATAGCTACTAAAAGCACATCTCCTAGGTATTTGCACATACTGTAATGGACTTGCTTATAGATTCTATGTAGTAGTATAACTTGCATATTACAGTATTTTCTCTGAATTTCTTTTTGTGCCCAAGGGTTCTTTCTTTTTCCCAGTTTAAACCTTTTTTGGTAGTTGTTCTTTTTGACCTTTTTCCTACCTGAGTTCTTCTTGCTTCTTTTGATGGCAGAATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTGGTTTGTTACTTTACCTTTTACTTTGTTGCCTTTCCGTAATATGTTTGAATGTGCTAATTTGCTTTAAGGTCTTAGTCAGCAGAGATCTTGGTTATAATTTATGTGGATCAGATATTACAGAACTGATATTACCAAGCTGTTACTGCAGAAGGACCTAAAGCAAATAGTAGTTCATGAAGCTTGTGCTTTTGACCAATCACATATGGTTGCCCTTTGACTGATTTACTCTATTATATGACTAAGGCCTTGTGAGTCAATGGTCCCACAGATATTCATGGAAGTATCGCATAACATCTATGTTGCTGATCTTTTTTTACCACTGACCATCAGCCGAGGAACTTATCATATTGCATGCAATGAAATCCACATCCAGTCACAATATAGAGAGTTGGGAAGCATGCCGAATGTGAGAAATATGGCTTGAATTGGGAAGTTCATTATGCTGCATGTCTCTGATTGCAGTTAGGGGATGTGGATGAGTCTGATATGAATTTAATTTTGTGCATTTGTTTTCACTGATGATAGGATACTATTTCGACAGAAATTAAAACAAATAGATGGGAATTTCTATGTGTAACTTGTTCATTTTCCTAATGCACACTCAGCTAGGATTGGTTGATGGATGTAGTCCAATATAAACAAAAAGATAAATTTAACAACCATATTCCTGTGTTAAGCTTCTAACGCTACCTCATGATGTCTATTTGAGAAAGAAATATATGGGCAATTATTATGTGGAGATGCTTCTGAATTTACTCATTATTGGCCTGTCTATGATCCTTATATAGTTTTTTTTCGATATCTAGCAATCACGACATTATCATAGAAAAGCTGCTATCCTGATAGAATTCTTGTATGTCAGATTTCTCTGCCTAGCACTCAGAAAACGAGATTGGCTGATACCGTTTAAGTTCTTGTTCTCCATATTGACTGATCCTGTTTTCTGATTTTACTACAGAGTAAAGACTGCATCCATTGGTGCAAATAGATTCACAAACTTCCATGACCATGGTGGTATCTCCATCATATTTACTAAATGAACACTTTAACCCCTTGTTGCAGGTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGGGCCTGTCGATCCGAGGTTGTTTTCACCAAATTTCAGATCAGATGGCATTTTTGAAGCTGTTGTAATGAAATACGAGCAGTAGCTAGTTCATGTAAACAACCATTAAAGTCAGAACCCACCACAGAAAGCTGTCTGCTCTTGGATTTCTTGTTATGATTAGTGGTGGGCTGAAGGCTAATGT</genome_strand>
        <mrna_strand>CGATTGCATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGGGCCTGTCGATCCGAGGTTGTTTTCACCAAATTTCAGATCAGATGGCATTTTTGAAGCTGTTGTAATGAAATACGAGCAGTAGCTAGTTCATGTAAACAACCATTAAAGTCAGAACCCACCACAGAAAGCTGTCTGCTCTTGNATTTCTTGTTATGATTAGTGGTGGGCTGAAAGCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551430" ref_strand="+" ref_description="SGN-E551430 [TUS-50-N18]">
      <seq>ataaaacatggctgttgcaacataaagtttgaaaaagcttgggtgttcaatgaataggaattagttttggagttggataactgttgaatgcttacagtatgtttctgatgaaagatatggtgaacatggaaagtcagtaaatgtcaaacatggaatgcttacatcctaaaaagaagattaagagaatactttggaagcggtccaaggagaaatcgaatggggaagactctgctggaaatggtacatcattgatgaagatggaacacaatgtgacaaagaggcatcattctgattcaatgaccagtggtgtagacaggccttgcatgatgtcacttctccctcttcccaacttggaatattgtaactcggggggccctgctatcttgacaggaacggcatgcaaaggggtagctggaccacctgttggagttgttgatatcggtgttagcatatctgcttactattttcgtattgctctacctggagtcaagaaagatcctggtgagttcaactgtgagattgaaaaagatgggaaggtccttattcggggggtgacatcaactggtggaagaaccgtatncagatattctcgggtctttgatatgaaaattcagcaacaatgtccatctggtcctttcacgtctccctttcgttgccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="106325" stop="103050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106025" g_stop="105968" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105967" i_stop="105015" i_length="953">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105014" g_stop="104572" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="501" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104571" i_stop="103510" i_length="1062">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103509" g_stop="103350" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="660" r_length="159" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E551430" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106025" e_stop="105968"/>
          <exon e_start="105014" e_stop="104572"/>
          <exon e_start="103509" e_stop="103350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGGGTTAAAAAGCTCTTACTCTTTTGCTTAGTTTATATCTTTGTTTTAGATTTTCTGTAAACTGACTGACTATTCTGTTTGTCAAGTTACTGAGTTATGTTCTGAACTAACTAATAGTAATGACGAGTTGGTTGATAGATTTGAACATGAAGTGGCTCATGCTTGCAGTTATAGGTAGTCGCTGATTTTGTTAACGTTCCAATTGTAACCAGAAAATCCCATTCCCTAGGGCACACTAAACCTCTTTTTGACCCAAGTAGTTTTTGTCCCACTCAGGCTAGGCATGTGGATTGAACAAATAACTGATTTTCCTATTGTTTTAGTGCCAGTAATTAAATGTATATGCCTATTATAATGTCACGAACTTACTTACTTCTCCAATTTTCCTCTAATTTATGTTTTCAACTGTTAGTAAGGTTGACACCAGCCTAGGAGTTAGTTTCTTCTATTTGAATCCCTCCTCTCTCCATATGTGCTGGTGACATGTGTGTAAACCAGGGATTAATGGCTTATAGAACATCTAGGGATTTGGTTAATGCTTTACATTTAGTAGCTTGCTTATGCTCAGTGGTTTAGTAGCTTGTAGAACATCTGTTGATCCTGGAGGTTCAGTTAATGCTTTACACTAAGTAGCTTGCTTATGTTCAGGGTCAGTTCCAGTTAAACCTGTCAATAAACTCACCTCATCTCTCTTTTCTTTATTTTATTGGCCTCTTGACACTGGGTATTGCCATAGCATATAGCTACTAAAAGCACATCTCCTAGGTATTTGCACATACTGTAATGGACTTGCTTATAGATTCTATGTAGTAGTATAACTTGCATATTACAGTATTTTCTCTGAATTTCTTTTTGTGCCCAAGGGTTCTTTCTTTTTCCCAGTTTAAACCTTTTTTGGTAGTTGTTCTTTTTGACCTTTTTCCTACCTGAGTTCTTCTTGCTTCTTTTGATGGCAGAATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTGGTTTGTTACTTTACCTTTTACTTTGTTGCCTTTCCGTAATATGTTTGAATGTGCTAATTTGCTTTAAGGTCTTAGTCAGCAGAGATCTTGGTTATAATTTATGTGGATCAGATATTACAGAACTGATATTACCAAGCTGTTACTGCAGAAGGACCTAAAGCAAATAGTAGTTCATGAAGCTTGTGCTTTTGACCAATCACATATGGTTGCCCTTTGACTGATTTACTCTATTATATGACTAAGGCCTTGTGAGTCAATGGTCCCACAGATATTCATGGAAGTATCGCATAACATCTATGTTGCTGATCTTTTTTTACCACTGACCATCAGCCGAGGAACTTATCATATTGCATGCAATGAAATCCACATCCAGTCACAATATAGAGAGTTGGGAAGCATGCCGAATGTGAGAAATATGGCTTGAATTGGGAAGTTCATTATGCTGCATGTCTCTGATTGCAGTTAGGGGATGTGGATGAGTCTGATATGAATTTAATTTTGTGCATTTGTTTTCACTGATGATAGGATACTATTTCGACAGAAATTAAAACAAATAGATGGGAATTTCTATGTGTAACTTGTTCATTTTCCTAATGCACACTCAGCTAGGATTGGTTGATGGATGTAGTCCAATATAAACAAAAAGATAAATTTAACAACCATATTCCTGTGTTAAGCTTCTAACGCTACCTCATGATGTCTATTTGAGAAAGAAATATATGGGCAATTATTATGTGGAGATGCTTCTGAATTTACTCATTATTGGCCTGTCTATGATCCTTATATAGTTTTTTTTCGATATCTAGCAATCACGACATTATCATAGAAAAGCTGCTATCCTGATAGAATTCTTGTATGTCAGATTTCTCTGCCTAGCACTCAGAAAACGAGATTGGCTGATACCGTTTAAGTTCTTGTTCTCCATATTGACTGATCCTGTTTTCTGATTTTACTACAGAGTAAAGACTGCATCCATTGGTGCAAATAGATTCACAAACTTCCATGACCATGGTGGTATCTCCATCATATTTACTAAATGAACACTTTAACCCCTTGTTGCAGGTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGG</genome_strand>
        <mrna_strand>ATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATNCAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCA-CGTCTCCCTTTCGTTGCCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688535" ref_strand="+" ref_description="SGN-E688535 [t3_tus_50_n18]">
      <seq>ataaaacatggctgttgcaacataaagtttgaaaaagcttgggtgttcaatgaataggaattagttttggagttggataactgttgaatgcttacagtatgtttctgatgaaagatatggtgaacatggaaagtcagtaaatgtcaaacatggaatgcttacatcctaaaaagaagattaagagaatactttggaagcggtccaaggagaaatcgaatggggaagactctgctggaaatggtacatcattgatgaagatggaacacaatgtgacaaagaggcatcattctgattcaatgaccagtggtgtagacaggccttgcatgatgtcacttctccctcttcccaacttggaatattgtaactcggggggccctgctatcttgacaggaacggcatgcaaaggggtagctggaccacctgttggagttgttgatatcggtgttagcatatctgcttactattttcgtattgctctacctggagtcaagaaagatcctggtgagttcaactgtgagattgaaaaagatgggaaggtccttattcggggggtgacatcaactggtggaagaaccgtatcaagatattctcgggtctttgatatgaaaattcagcaacaatgtccatctggtcctttcaccgtctcttttcgttgccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="106325" stop="103050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106025" g_stop="105968" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105967" i_stop="105015" i_length="953">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105014" g_stop="104572" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="501" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104571" i_stop="103510" i_length="1062">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103509" g_stop="103350" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="660" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E688535" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106025" e_stop="105968"/>
          <exon e_start="105014" e_stop="104572"/>
          <exon e_start="103509" e_stop="103350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGGGTTAAAAAGCTCTTACTCTTTTGCTTAGTTTATATCTTTGTTTTAGATTTTCTGTAAACTGACTGACTATTCTGTTTGTCAAGTTACTGAGTTATGTTCTGAACTAACTAATAGTAATGACGAGTTGGTTGATAGATTTGAACATGAAGTGGCTCATGCTTGCAGTTATAGGTAGTCGCTGATTTTGTTAACGTTCCAATTGTAACCAGAAAATCCCATTCCCTAGGGCACACTAAACCTCTTTTTGACCCAAGTAGTTTTTGTCCCACTCAGGCTAGGCATGTGGATTGAACAAATAACTGATTTTCCTATTGTTTTAGTGCCAGTAATTAAATGTATATGCCTATTATAATGTCACGAACTTACTTACTTCTCCAATTTTCCTCTAATTTATGTTTTCAACTGTTAGTAAGGTTGACACCAGCCTAGGAGTTAGTTTCTTCTATTTGAATCCCTCCTCTCTCCATATGTGCTGGTGACATGTGTGTAAACCAGGGATTAATGGCTTATAGAACATCTAGGGATTTGGTTAATGCTTTACATTTAGTAGCTTGCTTATGCTCAGTGGTTTAGTAGCTTGTAGAACATCTGTTGATCCTGGAGGTTCAGTTAATGCTTTACACTAAGTAGCTTGCTTATGTTCAGGGTCAGTTCCAGTTAAACCTGTCAATAAACTCACCTCATCTCTCTTTTCTTTATTTTATTGGCCTCTTGACACTGGGTATTGCCATAGCATATAGCTACTAAAAGCACATCTCCTAGGTATTTGCACATACTGTAATGGACTTGCTTATAGATTCTATGTAGTAGTATAACTTGCATATTACAGTATTTTCTCTGAATTTCTTTTTGTGCCCAAGGGTTCTTTCTTTTTCCCAGTTTAAACCTTTTTTGGTAGTTGTTCTTTTTGACCTTTTTCCTACCTGAGTTCTTCTTGCTTCTTTTGATGGCAGAATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTGGTTTGTTACTTTACCTTTTACTTTGTTGCCTTTCCGTAATATGTTTGAATGTGCTAATTTGCTTTAAGGTCTTAGTCAGCAGAGATCTTGGTTATAATTTATGTGGATCAGATATTACAGAACTGATATTACCAAGCTGTTACTGCAGAAGGACCTAAAGCAAATAGTAGTTCATGAAGCTTGTGCTTTTGACCAATCACATATGGTTGCCCTTTGACTGATTTACTCTATTATATGACTAAGGCCTTGTGAGTCAATGGTCCCACAGATATTCATGGAAGTATCGCATAACATCTATGTTGCTGATCTTTTTTTACCACTGACCATCAGCCGAGGAACTTATCATATTGCATGCAATGAAATCCACATCCAGTCACAATATAGAGAGTTGGGAAGCATGCCGAATGTGAGAAATATGGCTTGAATTGGGAAGTTCATTATGCTGCATGTCTCTGATTGCAGTTAGGGGATGTGGATGAGTCTGATATGAATTTAATTTTGTGCATTTGTTTTCACTGATGATAGGATACTATTTCGACAGAAATTAAAACAAATAGATGGGAATTTCTATGTGTAACTTGTTCATTTTCCTAATGCACACTCAGCTAGGATTGGTTGATGGATGTAGTCCAATATAAACAAAAAGATAAATTTAACAACCATATTCCTGTGTTAAGCTTCTAACGCTACCTCATGATGTCTATTTGAGAAAGAAATATATGGGCAATTATTATGTGGAGATGCTTCTGAATTTACTCATTATTGGCCTGTCTATGATCCTTATATAGTTTTTTTTCGATATCTAGCAATCACGACATTATCATAGAAAAGCTGCTATCCTGATAGAATTCTTGTATGTCAGATTTCTCTGCCTAGCACTCAGAAAACGAGATTGGCTGATACCGTTTAAGTTCTTGTTCTCCATATTGACTGATCCTGTTTTCTGATTTTACTACAGAGTAAAGACTGCATCCATTGGTGCAAATAGATTCACAAACTTCCATGACCATGGTGGTATCTCCATCATATTTACTAAATGAACACTTTAACCCCTTGTTGCAGGTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGG</genome_strand>
        <mrna_strand>ATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCTTTTCG-TTGCCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212042" ref_strand="+" ref_description="SGN-E212042 [cLEC-66-L14]">
      <seq>taaaacatggctgttgcaacataaagtttgaaaaagcttgggtgttcaatgaataggaattagttttggagttggataactgttgaatgcttacagtatgtttctgatgaaagatatggtgaacatggaaagtcagtaaatgtcaaacatggaatgcttacatcctaaaaagaagattaagagaatactttggaagcggtccaaggagaaatcgaatggggaagactctgctggaaatggtacatcattgatgaagatggaacacaatgtgacaaagaggcatcattctgattcaatgaccagtggtgtagacaggccttgcatgatgtcacttctccctcttcccaacttggaatattgtaactcggggggccctgctatcttgacaggaacggcatgcaaaggggtagctggaccacctgttggagttgttgatatcggtgttagcatatctgcttactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="106324" stop="104306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106024" g_stop="105968" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105967" i_stop="105015" i_length="953">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105014" g_stop="104606" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="466" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E212042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106024" e_stop="105968"/>
          <exon e_start="105014" e_stop="104606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGGGTTAAAAAGCTCTTACTCTTTTGCTTAGTTTATATCTTTGTTTTAGATTTTCTGTAAACTGACTGACTATTCTGTTTGTCAAGTTACTGAGTTATGTTCTGAACTAACTAATAGTAATGACGAGTTGGTTGATAGATTTGAACATGAAGTGGCTCATGCTTGCAGTTATAGGTAGTCGCTGATTTTGTTAACGTTCCAATTGTAACCAGAAAATCCCATTCCCTAGGGCACACTAAACCTCTTTTTGACCCAAGTAGTTTTTGTCCCACTCAGGCTAGGCATGTGGATTGAACAAATAACTGATTTTCCTATTGTTTTAGTGCCAGTAATTAAATGTATATGCCTATTATAATGTCACGAACTTACTTACTTCTCCAATTTTCCTCTAATTTATGTTTTCAACTGTTAGTAAGGTTGACACCAGCCTAGGAGTTAGTTTCTTCTATTTGAATCCCTCCTCTCTCCATATGTGCTGGTGACATGTGTGTAAACCAGGGATTAATGGCTTATAGAACATCTAGGGATTTGGTTAATGCTTTACATTTAGTAGCTTGCTTATGCTCAGTGGTTTAGTAGCTTGTAGAACATCTGTTGATCCTGGAGGTTCAGTTAATGCTTTACACTAAGTAGCTTGCTTATGTTCAGGGTCAGTTCCAGTTAAACCTGTCAATAAACTCACCTCATCTCTCTTTTCTTTATTTTATTGGCCTCTTGACACTGGGTATTGCCATAGCATATAGCTACTAAAAGCACATCTCCTAGGTATTTGCACATACTGTAATGGACTTGCTTATAGATTCTATGTAGTAGTATAACTTGCATATTACAGTATTTTCTCTGAATTTCTTTTTGTGCCCAAGGGTTCTTTCTTTTTCCCAGTTTAAACCTTTTTTGGTAGTTGTTCTTTTTGACCTTTTTCCTACCTGAGTTCTTCTTGCTTCTTTTGATGGCAGAATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTT</genome_strand>
        <mrna_strand>TAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745810" ref_strand="+" ref_description="SGN-E745810 [GI|47105060]">
      <seq>gaggacagaggaaatcaatgtatgggaggggcggtgagcagtgaactgattactaactagtaaagagcattgtgttggtgtttccaaagctaggttaagttgtggggaaggagagaaaaatgcatctgagcgaaaacgaagggatagagaagaagagtttcgtggttactggtggacttggttttataggcgccgcactttgtgttgaactcgtcagaaggggtgctcgtcttgtcaaagcatttgatcttagaacccattctccttggtcatctcaactccgtcaatgtggggttcaaatcattcaaggggatataacagacaaacaacaagtccagaaagcactacaagggtcagattgtgttttccatcttgcttcttatggcatgtccgggaaagaaatgcttcagtatagtcgtgttgatgaggttaatattaatggaacctgccacattattgatgcttgccttcaccatcacattaagaggcttgtttatgtcagcacacctaatgttgtttatggtggtaaggaaattcttaatggcaatgagaacctaccttatttcccaatagatgaccatgttgatccatatggacgaagcaaatcaattgctgaacaattggtcctaaagagcaaccgtcgtcccttcactaagaacaatggtgaatgcctttacacctgcgcaattcgtccagctgctatatatggtccaggtgaagaaaggcacctgccaaggatcataactcttacaaagctaggtctgtttccctttaaaatcggttcaccaaatgtaaaatcagattgggtgtacgtcgacaatcttgtattggcgcttttattggctagcatgggacttttggatgacatccctggcagagaagggcatccaattgctgctggtcaaccttattttatatcagatggttctcctatcaacagtttcgagttccttcgccctttactgaaaagcctggattatgatctaccaaagacatcactagctgtctctcatgcacttcttctgggaagaattttctgggctttctactcctttctgtatccttggttgaatagtaggtggcttcctcaacctctgatccttcctgctgaagtctacaaggttggtgtcactcattacttctctttcctaaaagcaaaagaggaacttggttacgtcccgatggtaagttctaaggagggcatggcagcaacaattgcatattggcaagaaagaaaacgtaggagtttggacggacctacaatatgggcatggctgttttgtgtaattggaatgttggggttgtttgctgctgcatatctgcccgactatggacccattcccttaattagagcagttcatctcttcttctttcgctctatattggcgttgaaagtgatatttgttctagcagctgctgcacatgtaggtgaagctatatatgcatggaatgttgcaaaaacaatagatcctgcaaatgcaagaggatggttttggcagacatttgctttggggatattttccctacgattacttctgaagagagctaaaaagtagggatcagcggccatatttctcttttaaaaaaaatatgaaggtttttttttatgataaacgagtttaacttgtgatcctaatcttgtactgctttgcatctcccggactggattgtccaagaaaatcaaggaaattgaaggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="109405" stop="113077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109704" g_stop="110012" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110013" i_stop="110268" i_length="256">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110269" g_stop="110611" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="652" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110612" i_stop="111081" i_length="470">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111082" g_stop="111353" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="924" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111580" g_stop="111776" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1121" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112201" g_stop="112773" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1695" r_length="574" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1698" polyA_stop="1713"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E745810" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1694</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109704" e_stop="110012"/>
          <exon e_start="110269" e_stop="110611"/>
          <exon e_start="111082" e_stop="111353"/>
          <exon e_start="111580" e_stop="111776"/>
          <exon e_start="112201" e_stop="112773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGACAGAGGAAATCAATGTATGGGAGGGGCGGTGAGCAGTGAACTGATTACTAACTAGTAAAGAGCATTGTGTTGGTGTTTCCAAAGCTAGGTTAAGTTGTGGGGAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCGTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAGGTATCCCTTATCCACATTTCCCATTCAACTCAACTTTTCTGATTCAGTTTACATTTCACTCGTTCTTGCTCAAAATATTCTGTTCAATTCAACATTTGGCGGATTGACTAGAATCCCAATTCCGATTAATATGAGGTGCCGGCTTTATTGATTGATTATTAAGGAATTTGTCACTCCTCTTTCTATGATTCCAGAAACGGATGATATATATATGTATATTCACTATTACACTCGTTCCTTTCTGCTCAATGGTCAGGGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCACGTAAGTTATTTTTTACATCAACATTTCATTCACAATCCACTGAAATATATCCTGTAAATGTATGCTCTTTATACAATCTACTGCAGTGACCTATCATTATGTACCATATGCTACATACTATAGAAAATAGCTGATGTCTAGACTAAATAGTTGCATTTGCAAGATTGTTTTTACTGGAGGATAAGTTTCCTTTTTTATAGAAATTACAAAATGAGCAAAATCTCTTCGGCTTTCCTTTGCTAGTGCAAACTTTTTTTAATCAGTCTCTCCAAGTCAAACATGTATGACAAAAAGCTGCCAAAACCCTTTGTAGTGATGCTAGTAACCCCTCAGCTGTTTGGCCTTTTCAGCTCTGCGTGTGTATATGTATATTTATGATTGTTTACAGCAAGAACTGCTACTTGATATTGTATTGACATAATTTTATATGGGTGTTTTCTCTCTTCTTGGCATGTATCTTCATTGGACAGTAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATGGTAAATACTCGTTGGCTTATATTTGTTGTGTAGGAATGTGGAATCTTGCTTTGGACCAAGTAGAGGTGTAATTACTAATTTCTAATTAAGATTATTCTTTTAGCATTCTCCAGAGACTTTAGAATCTAATTGCTTTTATCGGAGTAAAAAATGTTTCTATAAGCAGAGCAGTTTTTACTTGCTACTTACTGCATCACCTTCCTTCATCAATGATCTTCTGTTGCAGGTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTAGTGCTTCATATTTGAATCTATGTTTGCTTCTTTTATTCAAATGGATAGGCTTCACTAGCATTATCAAAAACCAGTTTTGTATACTACATATCTTTCCACCGGCTTTTACTCAGTTTATGGCATTTCTTACTACTGTGGAATTGATAATATATCTATACCTTGTGCATATCTAATTGGGCAAATGTAGCAGATTCTTTTTTATTTTTGTCACGAAGATGGTCTATATTGGTCAATAACTGTCAAATGGTTAAATACCTTAATTGTTTGACCTTGCGACAAGACTTGTTCCCTTAAGTCGTTACTTGTCCCTGTTCACACCTGTATTGATATCAAGCAATAGTAAACTCTCTCTGGTCACGGACACAACAATTGTATAAGAGGCAGAATTGTAGTTGATATTTGGTTTTCTGGTTGTGCTAGGTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTT-AAAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAAGGAAATTGAAG</genome_strand>
        <mrna_strand>GAGGACAGAGGAAATCAATGTATGGGAGGGGCGGTGAGCAGTGAACTGATTACTAACTAGTAAAGAGCATTGTGTTGGTGTTTCCAAAGCTAGGTTAAGTTGTGGGGAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCGTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAG................................................................................................................................................................................................................................................................GGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG..................................................................................................................................................................................................................................GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCGATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAAAATATGAAGGTTTTTTTTTATGATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCCGGACTGGATTGTCCAAGAAAATCAAGGAAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319636" ref_strand="+" ref_description="SGN-E319636 [cTOB-12-A10]">
      <seq>gaaggagagaaaaatgcatctgagcgaaaacgaagggatagagaagaagagtttcgtggttactggtggacttggttttataggcgccgcactttgtgttgaactcttcagaaggggtgctcgtcttgtcaaagcatttgatcttagaacccattctccttggtcatctcaactccgtcaatgtggggttcaaatcattcaaggggatataacagacaaacaacaagtccagaaagcactacaagggtcagattgtgttttccatcttgcttcttatggcatgtccgggaaagaaatgcttcagtatagtcgtgttgatgaggttaatattaatggaacctgccacattattgatgcttgccttcaccatcacattaagaggcttgtttatgtcagcacacctaatgttgtttatggtggtaaggaaattcttaatggcaatgagaacctaccttatttcccaatagatgaccatgttgatccatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="109510" stop="110853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109810" g_stop="110012" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110013" i_stop="110268" i_length="256">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110269" g_stop="110553" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="488" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E319636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109810" e_stop="110012"/>
          <exon e_start="110269" e_stop="110553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCGTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAGGTATCCCTTATCCACATTTCCCATTCAACTCAACTTTTCTGATTCAGTTTACATTTCACTCGTTCTTGCTCAAAATATTCTGTTCAATTCAACATTTGGCGGATTGACTAGAATCCCAATTCCGATTAATATGAGGTGCCGGCTTTATTGATTGATTATTAAGGAATTTGTCACTCCTCTTTCTATGATTCCAGAAACGGATGATATATATATGTATATTCACTATTACACTCGTTCCTTTCTGCTCAATGGTCAGGGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATG</genome_strand>
        <mrna_strand>GAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCTTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAG................................................................................................................................................................................................................................................................GGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200035" ref_strand="+" ref_description="SGN-E200035 [cLEC-8-A16]">
      <seq>gagcattattgatgcttgccttcaccatcacattaagaggcttgtttatgtcagcacacctaatgttgtttatggtggtaaggaaattcttaatggcaatgagaacctaccttatttcccaatagatgaccatgttgatccatatggacgaagcaaatcaattgctgaacaattggtcctaaagagcaaccgtcgtcccttcactaagaacaatggtgaatgcctttacacctgcgcaattcgtccagctgctatatatggtccaggtgaagaaaggcacctgccaaggatcataactcttacaaagctaggtctgtttccctttaaaatcggttcaccaaatgtaaaatcagattgggtgtacgttgacaatcttgtattggcgcttttattggctagcatgggacttttggatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110111" stop="111597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110408" g_stop="110611" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110612" i_stop="111081" i_length="470">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111082" g_stop="111297" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="420" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E200035" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110408" e_stop="110611"/>
          <exon e_start="111082" e_stop="111297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCACGTAAGTTATTTTTTACATCAACATTTCATTCACAATCCACTGAAATATATCCTGTAAATGTATGCTCTTTATACAATCTACTGCAGTGACCTATCATTATGTACCATATGCTACATACTATAGAAAATAGCTGATGTCTAGACTAAATAGTTGCATTTGCAAGATTGTTTTTACTGGAGGATAAGTTTCCTTTTTTATAGAAATTACAAAATGAGCAAAATCTCTTCGGCTTTCCTTTGCTAGTGCAAACTTTTTTTAATCAGTCTCTCCAAGTCAAACATGTATGACAAAAAGCTGCCAAAACCCTTTGTAGTGATGCTAGTAACCCCTCAGCTGTTTGGCCTTTTCAGCTCTGCGTGTGTATATGTATATTTATGATTGTTTACAGCAAGAACTGCTACTTGATATTGTATTGACATAATTTTATATGGGTGTTTTCTCTCTTCTTGGCATGTATCTTCATTGGACAGTAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACAT</genome_strand>
        <mrna_strand>GAGCATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTTGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204473" ref_strand="+" ref_description="SGN-E204473 [cLEC-24-G21]">
      <seq>attattgatgcttgccttcaccatcacattaagaggcttgtttatgtcagcacacctaatgttgtttatggtggtaaggaaattcttaatggcaatgagaacctaccttatttcccaatagatgaccatgttgatccatatggacgaagcaaatcaattgctgaacaattggtcctaaagagcaaccgtcgtcccttcactaagaacaatggtgaatgcctttacacctgcgcaattcgtccagctgctatatatggtccaggtgaagaaaggcacctgccaaggatcataactcttacaaagctaggtctgtttccctttaaaatcggttcaccaaatgtaaaatcagattgggtgtacgtcgacaatcttgtattggcgcttttattggctagcatgggacttttggatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110112" stop="111596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110412" g_stop="110611" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110612" i_stop="111081" i_length="470">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111082" g_stop="111296" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="415" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E204473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110412" e_stop="110611"/>
          <exon e_start="111082" e_stop="111296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCACGTAAGTTATTTTTTACATCAACATTTCATTCACAATCCACTGAAATATATCCTGTAAATGTATGCTCTTTATACAATCTACTGCAGTGACCTATCATTATGTACCATATGCTACATACTATAGAAAATAGCTGATGTCTAGACTAAATAGTTGCATTTGCAAGATTGTTTTTACTGGAGGATAAGTTTCCTTTTTTATAGAAATTACAAAATGAGCAAAATCTCTTCGGCTTTCCTTTGCTAGTGCAAACTTTTTTTAATCAGTCTCTCCAAGTCAAACATGTATGACAAAAAGCTGCCAAAACCCTTTGTAGTGATGCTAGTAACCCCTCAGCTGTTTGGCCTTTTCAGCTCTGCGTGTGTATATGTATATTTATGATTGTTTACAGCAAGAACTGCTACTTGATATTGTATTGACATAATTTTATATGGGTGTTTTCTCTCTTCTTGGCATGTATCTTCATTGGACAGTAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACA</genome_strand>
        <mrna_strand>ATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204476" ref_strand="+" ref_description="SGN-E204476 [cLEC-24-I3]">
      <seq>attattgatgcttgccttcaccatcacattaagaggcttgtttatgtcagcacacctaatgttgtttatggtggtaaggaaattcttaatggcaatgagaacctaccttatttcccaatagatgaccatgttgatccatatggacgaagcaaatcaattgctgaacaattggtcctaaagagcaaccgtcgtcccttcactaagaacaatggtgaatgcctttacacctgcgcaattcgtccagctgctatatatggtccaggtgaagaaaggcacctgccaaggatcataactcttacaaagctaggtctgtttccctttaaaatcggttcaccaaatgtaaaatcagattgggtgtacgtcgacaatcttgtattggcgcttttattggctagcatgggacttttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110112" stop="111593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110412" g_stop="110611" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110612" i_stop="111081" i_length="470">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111082" g_stop="111293" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="412" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E204476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110412" e_stop="110611"/>
          <exon e_start="111082" e_stop="111293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCACGTAAGTTATTTTTTACATCAACATTTCATTCACAATCCACTGAAATATATCCTGTAAATGTATGCTCTTTATACAATCTACTGCAGTGACCTATCATTATGTACCATATGCTACATACTATAGAAAATAGCTGATGTCTAGACTAAATAGTTGCATTTGCAAGATTGTTTTTACTGGAGGATAAGTTTCCTTTTTTATAGAAATTACAAAATGAGCAAAATCTCTTCGGCTTTCCTTTGCTAGTGCAAACTTTTTTTAATCAGTCTCTCCAAGTCAAACATGTATGACAAAAAGCTGCCAAAACCCTTTGTAGTGATGCTAGTAACCCCTCAGCTGTTTGGCCTTTTCAGCTCTGCGTGTGTATATGTATATTTATGATTGTTTACAGCAAGAACTGCTACTTGATATTGTATTGACATAATTTTATATGGGTGTTTTCTCTCTTCTTGGCATGTATCTTCATTGGACAGTAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATG</genome_strand>
        <mrna_strand>ATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378537" ref_strand="+" ref_description="SGN-E378537 [TUS-27-F11]">
      <seq>ttttggatgacatccctggcagagaagggcatccaattgctgctggtcaaccttattttatatcagatggttctcctatcaacagtttcgagttccttcgccctttactgaaaagcctggattatgatctaccaaagacatcactagctgtctctcatgcacttcttctgggaagaattttctgggctttctactcctttctgtatccttggttgaatagtaggtggcttcctcaacctctgatccttcctgctgaagtctacaaggttggtgtcactcattacttctctttcctaaaagcaaaagaggaacttggttacgtcccaatggtaagttctaaggagggcatggcagcaacaattgcatattggcaagaaagaaaacgtaggagtttggacggacctacaatatgggcatggctgttttgtgtaattggaatgttggggttgtttgctgctgcatatctgcccgactatggacccattcccttaattagagcagttcatctcttcttctttcgctctatattggcgttgaaagtgatatttgttctagcagctgctgcacatgtaggtgaagctatatatgcatggaatgttgcaaaaacaatagatcctgcaaatgcaagaggatggttttggcagacatttgctttggggatattttccctacgattacttctgaagagagctaaaaagtagggatcagcggccatatttctcttttaaaaaatatgaaggtttttttttataataaacgagtttaacttgtgatcctaatcttgtactgctttgcatctcctggactggattgtccaagaaaatcaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110985" stop="113065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111285" g_stop="111353" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111580" g_stop="111776" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="266" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112201" g_stop="112765" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="830" r_length="564" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E378537" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111285" e_stop="111353"/>
          <exon e_start="111580" e_stop="111776"/>
          <exon e_start="112201" e_stop="112765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATGGTAAATACTCGTTGGCTTATATTTGTTGTGTAGGAATGTGGAATCTTGCTTTGGACCAAGTAGAGGTGTAATTACTAATTTCTAATTAAGATTATTCTTTTAGCATTCTCCAGAGACTTTAGAATCTAATTGCTTTTATCGGAGTAAAAAATGTTTCTATAAGCAGAGCAGTTTTTACTTGCTACTTACTGCATCACCTTCCTTCATCAATGATCTTCTGTTGCAGGTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTAGTGCTTCATATTTGAATCTATGTTTGCTTCTTTTATTCAAATGGATAGGCTTCACTAGCATTATCAAAAACCAGTTTTGTATACTACATATCTTTCCACCGGCTTTTACTCAGTTTATGGCATTTCTTACTACTGTGGAATTGATAATATATCTATACCTTGTGCATATCTAATTGGGCAAATGTAGCAGATTCTTTTTTATTTTTGTCACGAAGATGGTCTATATTGGTCAATAACTGTCAAATGGTTAAATACCTTAATTGTTTGACCTTGCGACAAGACTTGTTCCCTTAAGTCGTTACTTGTCCCTGTTCACACCTGTATTGATATCAAGCAATAGTAAACTCTCTCTGGTCACGGACACAACAATTGTATAAGAGGCAGAATTGTAGTTGATATTTGGTTTTCTGGTTGTGCTAGGTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAAGGA</genome_strand>
        <mrna_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG..................................................................................................................................................................................................................................GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTT-AAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370907" ref_strand="+" ref_description="SGN-E370907 [TUS-27-F11]">
      <seq>ttttggatgacatccctggcagagaagggcatccaattgctgctggtcaaccttattttatatcagatggttctcctatcaacagtttcgagttccttcgccctttactgaaaagcctggattatgatctaccaaagacatcactagctgtctctcatgcacttcttctgggaagaattttctgggctttctactcctttctgtatccttggttgaatagtaggtggcttcctcaacctctgatccttcctgctgaagtctacaaggttggtgtcactcattacttctctttcctaaaagcaaaagaggaacttggttacgtcccaatggtaagttctaaggagggcatggcagcaacaattgcatattggcaagaaagaaaacgtaggagtttggacggacctacaatatgggcatggctgttttgtgtaattggaatgttggggttgtttgctgctgcatatctgcccgactatggacccattcccttaattagagcagttcatctcttcttctttcgctctatattggcgttgaaagtgatatttgttctagcagctgctgcacatgtaggtgaagctatatatgcatggaatgttgcaaaaacaatagatcctgcaaatgcaagaggatggttttggcagacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110985" stop="112885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111285" g_stop="111353" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111580" g_stop="111776" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="266" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112201" g_stop="112585" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="651" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E370907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111285" e_stop="111353"/>
          <exon e_start="111580" e_stop="111776"/>
          <exon e_start="112201" e_stop="112585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATGGTAAATACTCGTTGGCTTATATTTGTTGTGTAGGAATGTGGAATCTTGCTTTGGACCAAGTAGAGGTGTAATTACTAATTTCTAATTAAGATTATTCTTTTAGCATTCTCCAGAGACTTTAGAATCTAATTGCTTTTATCGGAGTAAAAAATGTTTCTATAAGCAGAGCAGTTTTTACTTGCTACTTACTGCATCACCTTCCTTCATCAATGATCTTCTGTTGCAGGTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTAGTGCTTCATATTTGAATCTATGTTTGCTTCTTTTATTCAAATGGATAGGCTTCACTAGCATTATCAAAAACCAGTTTTGTATACTACATATCTTTCCACCGGCTTTTACTCAGTTTATGGCATTTCTTACTACTGTGGAATTGATAATATATCTATACCTTGTGCATATCTAATTGGGCAAATGTAGCAGATTCTTTTTTATTTTTGTCACGAAGATGGTCTATATTGGTCAATAACTGTCAAATGGTTAAATACCTTAATTGTTTGACCTTGCGACAAGACTTGTTCCCTTAAGTCGTTACTTGTCCCTGTTCACACCTGTATTGATATCAAGCAATAGTAAACTCTCTCTGGTCACGGACACAACAATTGTATAAGAGGCAGAATTGTAGTTGATATTTGGTTTTCTGGTTGTGCTAGGTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTG</genome_strand>
        <mrna_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG..................................................................................................................................................................................................................................GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270353" ref_strand="+" ref_description="SGN-E270353 [cLEM-1-E24]">
      <seq>ttttggatgacatccctggcagagaaaggcatccaattgctgctggtcaaccttattttatatcagatggttctcctatcaacagtttcgagttccttcgccctttactgaaaagcctggattatgatctaccaaagacatcactagctgtctctcatgcaccnnnttnntnnccntttnttnnnccctgggaagaattttctgggctttctactcctttctgtatccttggttgaatagtaggtggcttcctcaacctctgatccttcctgctgaagtctacaaggttggtgtcactcattacttctctttcctaaaagcaaaagaggaacttggttacgtcccaatggtaagttctaaggagggcatggcagcaacaattgcatattggcaagaaagaaaacgtatgagtttggacggacctacaatatgggcatggctgttttgtgtaattggaatgttggggttgtttgctgctgcatatctgcccgactatggacccattcccttaattagagcagttcatctcttcttctttcgctctatattggcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110985" stop="112770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111285" g_stop="111353" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111580" g_stop="111776" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="286" r_length="217" r_score="0.797"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112201" g_stop="112470" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="556" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E270353" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111285" e_stop="111353"/>
          <exon e_start="111580" e_stop="111776"/>
          <exon e_start="112201" e_stop="112470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATGGTAAATACTCGTTGGCTTATATTTGTTGTGTAGGAATGTGGAATCTTGCTTTGGACCAAGTAGAGGTGTAATTACTAATTTCTAATTAAGATTATTCTTTTAGCATTCTCCAGAGACTTTAGAATCTAATTGCTTTTATCGGAGTAAAAAATGTTTCTATAAGCAGAGCAGTTTTTACTTGCTACTTACTGCATCACCTTCCTTCATCAATGATCTTCTGTTGCAGGTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCA-C----T--T---C-----TT-----CTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTAGTGCTTCATATTTGAATCTATGTTTGCTTCTTTTATTCAAATGGATAGGCTTCACTAGCATTATCAAAAACCAGTTTTGTATACTACATATCTTTCCACCGGCTTTTACTCAGTTTATGGCATTTCTTACTACTGTGGAATTGATAATATATCTATACCTTGTGCATATCTAATTGGGCAAATGTAGCAGATTCTTTTTTATTTTTGTCACGAAGATGGTCTATATTGGTCAATAACTGTCAAATGGTTAAATACCTTAATTGTTTGACCTTGCGACAAGACTTGTTCCCTTAAGTCGTTACTTGTCCCTGTTCACACCTGTATTGATATCAAGCAATAGTAAACTCTCTCTGGTCACGGACACAACAATTGTATAAGAGGCAGAATTGTAGTTGATATTTGGTTTTCTGGTTGTGCTAGGTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTG</genome_strand>
        <mrna_strand>TTTTGGATGACATCCCTGGCAGAGAAAGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG..................................................................................................................................................................................................................................GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACCNNNTTNNTNNCCNTTTNTTNNNCCCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTATGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370906" ref_strand="+" ref_description="SGN-E370906 [TUS-27-F11](-)">
      <seq>aacctctgatccttcctgctgaagtctacaaggttggtgtcactcattacttctctttcctaaaaacaaaaaaggaacttggttacgtcccaatggtaagttttaaggagggcatggcagcaacaattgcatattggcaaaaaaaaaaacgtaggagtttggacggacctacaatatgggcatggctgttttgtgtaattggaaagttggggttgtttgctgctgcatatctgcccgactatggaccccttcccttaattaaagcagttcatctttttttctttcgctctatattggcgttgaaagtgatatttgttttagcagctgctgcccatgtaggtgaagctatatatgcatggaatgttgcaaaaacaatagatcctgcaaaagcaaaaggatgggtttggcagacatttgctttggggatattttccctacgattacttttgaaaaaagctaaaaagtagggatcagcggccatatttttcttttaaaaaaatatgaagggttttttttataataaacgagtttaacttgtgatcctaatcttggactgctttgcatttcctgggctggattgtcccagaaaatccagggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="111445" stop="113067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111745" g_stop="111776" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112201" g_stop="112773" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="605" r_length="573" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="627"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-E370906" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111745" e_stop="111776"/>
          <exon e_start="112201" e_stop="112773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTAGTGCTTCATATTTGAATCTATGTTTGCTTCTTTTATTCAAATGGATAGGCTTCACTAGCATTATCAAAAACCAGTTTTGTATACTACATATCTTTCCACCGGCTTTTACTCAGTTTATGGCATTTCTTACTACTGTGGAATTGATAATATATCTATACCTTGTGCATATCTAATTGGGCAAATGTAGCAGATTCTTTTTTATTTTTGTCACGAAGATGGTCTATATTGGTCAATAACTGTCAAATGGTTAAATACCTTAATTGTTTGACCTTGCGACAAGACTTGTTCCCTTAAGTCGTTACTTGTCCCTGTTCACACCTGTATTGATATCAAGCAATAGTAAACTCTCTCTGGTCACGGACACAACAATTGTATAAGAGGCAGAATTGTAGTTGATATTTGGTTTTCTGGTTGTGCTAGGTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAAGGAAATTGAAG</genome_strand>
        <mrna_strand>AACCTCTGATCCTTCCTGCTGAAGTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAACAAAAAAGGAACTTGGTTACGTCCCAATGGTAAGTTTTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAAAAAAAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAAAGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCCTTCCCTTAATTAAAGCAGTTCATCTTTTTTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTTTAGCAGCTGCTGCCCATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAAAGCAAAAGGATGGGTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTTTGAAAAAAGCTAAAAAGTAGGGATCAGCGGCCATATTTTTCTTTTAAAAAAATATGAAGGGTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGGACTGCTTTGCATTTCCTGGGCTGGATTGTCCCAGAAAATCCAGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263652" ref_strand="+" ref_description="SGN-E263652 [cLEG-60-E13]">
      <seq>gctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcggtgagcagtttatgggccctcctgaatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaagagaaggcgcctcacaccctttgctgatacaagcaacccaattatagcacaggctgctttcctctctgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="117492" stop="115031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117324" g_stop="116939" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116938" i_stop="116609" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116608" g_stop="116237" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="758" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116236" i_stop="115353" i_length="884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115352" g_stop="115331" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="780" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E263652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117324" e_stop="116939"/>
          <exon e_start="116608" e_stop="116237"/>
          <exon e_start="115352" e_stop="115331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAGGTACTAAGTCACATTTCTTATTACATGGATGTTTTAGGATGTTAGATCAGTGTTTGGGAAGCAAGAAGCAAAAAACAGCGACAAGGGTTCGCTTTACAGAAGCGAGAAGCGTGAAGTTTGCGCACACTTTTTTCAGATAAAGCGGTATTTAGTATAAAAATAATAAAAAATATTAAATAACTGAATAGAAGTAACATATTCCTAGATTAAAAAGTAAATAGATTGTCAATAATCCTCGTGAGTCATAACATATAAAACAAATACATAACCAAATCACAAAGGATCAAACTCTTATTCTTCATTGTGACATTGAATAAGAAAATACAACTTACTACAAGCAAAGATAAAAGAGTAACTCAGTAATAGAACAACAAAAATACTGTAGAAAAAAATATAGAGACAGAACAGATCAGCAGCCAGCAAAAAAGAAAAAAAAAAGAAAAAAACAGAGCAGCAGTAAGTCAGTTAGATATACATGTTCTATTTAGTATTGTGGACCTTGAATATTAAAAAGAAACTGGACATCTGTTAAGTGCTTGTGCATACAATATTCCCTTGGATACTTTGCAAGTTCAATGTAGTTGCTGAAGCAATTCCAATTTCTACGCGATCAAGGGAACTTCGCTTCCCATCTGACTTTGAATTATTTACGTAGATCTTAAGACGTTCTGCTGAAGCAATTTCAATTTCTACACAATCAAGGAAACTTTGCTTCTCATCTTACTTTGATATGTTATATAGATCTAGGGTCATTCTTCTTCCTCATTGACTAAGAGTCTTTTGGGCTGCTGATTTCTTGAAGTAGACAAGTTGATTAATTAGGTCTTTAATAATAGTCAAGTTAGACTTCAACTGATTCCTCTTGTTTTTGAATCTTGCTGCAGGCTGCTTTCCTCTCTGCTCTTG</genome_strand>
        <mrna_strand>GCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCCTCTCTGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262131" ref_strand="+" ref_description="SGN-E262131 [cLEG-58-O18]">
      <seq>ctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcngtgagcagtttatgggccctccctgatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaaagagaagcgcctcacaccctttgctgatacaagcaacccaattatagcacaggctgctttcctctctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="117492" stop="115034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117323" g_stop="116939" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116938" i_stop="116609" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116608" g_stop="116237" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="757" r_length="372" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116236" i_stop="115353" i_length="884">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115352" g_stop="115334" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="776" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E262131" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117323" e_stop="116939"/>
          <exon e_start="116608" e_stop="116237"/>
          <exon e_start="115352" e_stop="115334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCT-AAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAGGTACTAAGTCACATTTCTTATTACATGGATGTTTTAGGATGTTAGATCAGTGTTTGGGAAGCAAGAAGCAAAAAACAGCGACAAGGGTTCGCTTTACAGAAGCGAGAAGCGTGAAGTTTGCGCACACTTTTTTCAGATAAAGCGGTATTTAGTATAAAAATAATAAAAAATATTAAATAACTGAATAGAAGTAACATATTCCTAGATTAAAAAGTAAATAGATTGTCAATAATCCTCGTGAGTCATAACATATAAAACAAATACATAACCAAATCACAAAGGATCAAACTCTTATTCTTCATTGTGACATTGAATAAGAAAATACAACTTACTACAAGCAAAGATAAAAGAGTAACTCAGTAATAGAACAACAAAAATACTGTAGAAAAAAATATAGAGACAGAACAGATCAGCAGCCAGCAAAAAAGAAAAAAAAAAGAAAAAAACAGAGCAGCAGTAAGTCAGTTAGATATACATGTTCTATTTAGTATTGTGGACCTTGAATATTAAAAAGAAACTGGACATCTGTTAAGTGCTTGTGCATACAATATTCCCTTGGATACTTTGCAAGTTCAATGTAGTTGCTGAAGCAATTCCAATTTCTACGCGATCAAGGGAACTTCGCTTCCCATCTGACTTTGAATTATTTACGTAGATCTTAAGACGTTCTGCTGAAGCAATTTCAATTTCTACACAATCAAGGAAACTTTGCTTCTCATCTTACTTTGATATGTTATATAGATCTAGGGTCATTCTTCTTCCTCATTGACTAAGAGTCTTTTGGGCTGCTGATTTCTTGAAGTAGACAAGTTGATTAATTAGGTCTTTAATAATAGTCAAGTTAGACTTCAACTGATTCCTCTTGTTTTTGAATCTTGCTGCAGGCTGCTTTCCTCTCTGCTC</genome_strand>
        <mrna_strand>CTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCNGTGAGCAGTTTATGGGCCCTCCCTGATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAAGAGAA-GCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCCTCTCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212165" ref_strand="+" ref_description="SGN-E212165 [cLEC-75-H24]">
      <seq>tcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcggtgagcagtttatgggccctcctgaatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaagagaaggcgcctcacaccctttgctgatacnagcaacccaattatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="117492" stop="115941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117326" g_stop="116939" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116938" i_stop="116609" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116608" g_stop="116241" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="756" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E212165" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117326" e_stop="116939"/>
          <exon e_start="116608" e_stop="116241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGC</genome_strand>
        <mrna_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACNAGCAACCCAATTATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271478" ref_strand="+" ref_description="SGN-E271478 [cLEM-5-J20]">
      <seq>gctttcttcctgaattctttgttggaaggtcgccttccaagaaccctaagaggtacgggtactataggaatactattattcgtacattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcacctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-yrlew/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="117492" stop="116171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117324" g_stop="116939" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116938" i_stop="116609" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116608" g_stop="116471" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="524" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-E271478" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117324" e_stop="116939"/>
          <exon e_start="116608" e_stop="116471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTA</genome_strand>
        <mrna_strand>GCTTTCTTCCTGAATTCTTTGTTGGAAGGTCGCCTTCCAAGAACCCTAAGAGGTACGGGTACTATAGGAATACTATTATTCGTACATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>188</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2827" PGL_stop="6871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2827" e_stop="2913"/>
            <exon e_start="3045" e_stop="3163"/>
            <exon e_start="3936" e_stop="4115"/>
            <exon e_start="4684" e_stop="4740"/>
            <exon e_start="5293" e_stop="5360"/>
            <exon e_start="6368" e_stop="6871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.742" e_score="1.000"/>
          <exon-intron don_prob="0.035" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.564" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.771" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2827" e_stop="2913" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.742">
            <gDNA_intron_boundary i_start="2914" i_stop="3044" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3045" e_stop="3163" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.035" acc_prob="0.932">
            <gDNA_intron_boundary i_start="3164" i_stop="3935" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3936" e_stop="4115" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.983">
            <gDNA_intron_boundary i_start="4116" i_stop="4683" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4684" e_stop="4740" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.564" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4741" i_stop="5292" i_length="552"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5293" e_stop="5360" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.771">
            <gDNA_intron_boundary i_start="5361" i_stop="6367" i_length="1007"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="6368" e_stop="6871" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2827" stop="2913"/>
              <exon start="3045" stop="3163"/>
              <exon start="3936" stop="4115"/>
              <exon start="4684" stop="4740"/>
              <exon start="5293" stop="5360"/>
              <exon start="6368" stop="6564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6564" stop="6871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAGAGATGGAGAAGTGGAATGAGCTACAATCTCGATTACTATCTCAATTCAACAATGCTTCTTCCATCATTCAGAGGTTACAG : ATTCTTCAGGATTCTAAGAACTATGGTGCTTTGACATGTGTTGAAGCCATTCAGGAAGCTGTCTTGCTGAAACAGATGAATTCTCTACAAAATATCTTGCTTTCAATGAATGAAACTAT : GGAAAAGTTTCATGTGGTTGTGTTGTCGCTTGATAAGATGGTTCGTGATGGTAGACAGCTCATAAAAGGGGGATCCGTTCAGAAGAATGTGAAACAGCTACAGCAACACGTCGGGATGAAGCCTAGCATTGCTGATTGCTTGGATGGGCTACAACTTCTTTATGAGATGCACCAATCAGA : GTACCGTCTGAAATTGTCGGTCATATCAGCAATTTCAGCATTTGCTTTACAGCCTAG : TGCAACTGATGATTTAGCTGCACTTCAGCAACTGTTGGATGATCAGCCTAACATCCCCAAAGAGGAAG : TTCAAGTCATTTTTGAAATCATATTTGCTGAAGAGATAGCTTGATGTCTACTAAGCATGGATCCTTGGACTGATGAAGTGCTTTTGGAACTTGCAATGTGTTTTAAGTTAAGGAAGACTTCAGTTCTGGCTAAAGAGCAGGAAATATCTTGCACTTGGGTGCTACAGTGCTCGAACTCTTCAAGTGTATGTGTCGGATTTTCCAAAAACCAGTGTATTTTTAGAGGATCCGCCATGGGTGTGGCGACATTTTTGGAGAATCCAAGCAACACCGCTTTGGTGAAGCAGAGAATTATCTTGATTGATCACTGTAGATGGAAGGTTTTGGACCTTGGAAATGGAAGAGATGACTTTAAGTGTTGTGTATACTCAGTTTCATTTATTTATATGTCTGCAACTTTGTATAAACAACCTTTTGTTTTATTTTTCCTTGGTCAGTAGCATGGTTTTGATTAAACAGCTAAATCCAATAATACAATTTTAACACAAATTCTTCCTAATGTCT</gDNA_template>
            <first_frame> K  E  E  M  E  K  W  N  E  L  Q  S  R  L  L  S  Q  F  N  N  A  S  S  I  I  Q  R  L  Q  :  I  L  Q  D  S  K  N  Y  G  A  L  T  C  V  E  A  I  Q  E  A  V  L  L  K  Q  M  N  S  L  Q  N  I  L  L  S  M  N  E  T  M :   E  K  F  H  V  V  V  L  S  L  D  K  M  V  R  D  G  R  Q  L  I  K  G  G  S  V  Q  K  N  V  K  Q  L  Q  Q  H  V  G  M  K  P  S  I  A  D  C  L  D  G  L  Q  L  L  Y  E  M  H  Q  S  E :   Y  R  L  K  L  S  V  I  S  A  I  S  A  F  A  L  Q  P  S :   A  T  D  D  L  A  A  L  Q  Q  L  L  D  D  Q  P  N  I  P  K  E  E   : V  Q  V  I  F  E  I  I  F  A  E  E  I  A  *  C  L  L  S  M  D  P  W  T  D  E  V  L  L  E  L  A  M  C  F  K  L  R  K  T  S  V  L  A  K  E  Q  E  I  S  C  T  W  V  L  Q  C  S  N  S  S  S  V  C  V  G  F  S  K  N  Q  C  I  F  R  G  S  A  M  G  V  A  T  F  L  E  N  P  S  N  T  A  L  V  K  Q  R  I  I  L  I  D  H  C  R  W  K  V  L  D  L  G  N  G  R  D  D  F  K  C  C  V  Y  S  V  S  F  I  Y  M  S  A  T  L  Y  K  Q  P  F  V  L  F  F  L  G  Q  *  H  G  F  D  *  T  A  K  S  N  N  T  I  L  T  Q  I  L  P  N  V  </first_frame>
            <second_frame>  R  K  R  W  R  S  G  M  S  Y  N  L  D  Y  Y  L  N  S  T  M  L  L  P  S  F  R  G  Y  R :   F  F  R  I  L  R  T  M  V  L  *  H  V  L  K  P  F  R  K  L  S  C  *  N  R  *  I  L  Y  K  I  S  C  F  Q  *  M  K  L   : W  K  S  F  M  W  L  C  C  R  L  I  R  W  F  V  M  V  D  S  S  *  K  G  D  P  F  R  R  M  *  N  S  Y  S  N  T  S  G  *  S  L  A  L  L  I  A  W  M  G  Y  N  F  F  M  R  C  T  N  Q   : S  T  V  *  N  C  R  S  Y  Q  Q  F  Q  H  L  L  Y  S  L   : V  Q  L  M  I  *  L  H  F  S  N  C  W  M  I  S  L  T  S  P  K  R  K  :  F  K  S  F  L  K  S  Y  L  L  K  R  *  L  D  V  Y  *  A  W  I  L  G  L  M  K  C  F  W  N  L  Q  C  V  L  S  *  G  R  L  Q  F  W  L  K  S  R  K  Y  L  A  L  G  C  Y  S  A  R  T  L  Q  V  Y  V  S  D  F  P  K  T  S  V  F  L  E  D  P  P  W  V  W  R  H  F  W  R  I  Q  A  T  P  L  W  *  S  R  E  L  S  *  L  I  T  V  D  G  R  F  W  T  L  E  M  E  E  M  T  L  S  V  V  Y  T  Q  F  H  L  F  I  C  L  Q  L  C  I  N  N  L  L  F  Y  F  S  L  V  S  S  M  V  L  I  K  Q  L  N  P  I  I  Q  F  *  H  K  F  F  L  M  S </second_frame>
            <third_frame>   G  R  D  G  E  V  E  *  A  T  I  S  I  T  I  S  I  Q  Q  C  F  F  H  H  S  E  V  T   : D  S  S  G  F  *  E  L  W  C  F  D  M  C  *  S  H  S  G  S  C  L  A  E  T  D  E  F  S  T  K  Y  L  A  F  N  E  *  N  Y  :  G  K  V  S  C  G  C  V  V  A  *  *  D  G  S  *  W  *  T  A  H  K  R  G  I  R  S  E  E  C  E  T  A  T  A  T  R  R  D  E  A  *  H  C  *  L  L  G  W  A  T  T  S  L  *  D  A  P  I  R  :  V  P  S  E  I  V  G  H  I  S  N  F  S  I  C  F  T  A  *  :  C  N  *  *  F  S  C  T  S  A  T  V  G  *  S  A  *  H  P  Q  R  G  S :   S  S  H  F  *  N  H  I  C  *  R  D  S  L  M  S  T  K  H  G  S  L  D  *  *  S  A  F  G  T  C  N  V  F  *  V  K  E  D  F  S  S  G  *  R  A  G  N  I  L  H  L  G  A  T  V  L  E  L  F  K  C  M  C  R  I  F  Q  K  P  V  Y  F  *  R  I  R  H  G  C  G  D  I  F  G  E  S  K  Q  H  R  F  G  E  A  E  N  Y  L  D  *  S  L  *  M  E  G  F  G  P  W  K  W  K  R  *  L  *  V  L  C  I  L  S  F  I  Y  L  Y  V  C  N  F  V  *  T  T  F  C  F  I  F  P  W  S  V  A  W  F  *  L  N  S  *  I  Q  *  Y  N  F  N  T  N  S  S  *  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2827" stop="2913"/>
                    <exon start="3045" stop="3163"/>
                    <exon start="3936" stop="4115"/>
                    <exon start="4684" stop="4740"/>
                    <exon start="5293" stop="5360"/>
                    <exon start="6368" stop="6411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEEMEKWNELQSRLLSQFNNASSIIQRLQILQDSKNYGALTCVEAIQEAVLLKQMNSLQNILLSMNETMEKFHVVVLSLDKMVRDGRQLIKGGSVQKNVKQLQQHVGMKPSIADCLDGLQLLYEMHQSEYRLKLSVISAISAFALQPSATDDLAALQQLLDDQPNIPKEEVQVIFEIIFAEEIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6412" stop="6807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLSMDPWTDEVLLELAMCFKLRKTSVLAKEQEISCTWVLQCSNSSSVCVGFSKNQCIFRGSAMGVATFLENPSNTALVKQRIILIDHCRWKVLDLGNGRDDFKCCVYSVSFIYMSATLYKQPFVLFFLGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7789" PGL_stop="12241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7789" e_stop="8014"/>
            <exon e_start="8743" e_stop="9310"/>
            <exon e_start="9444" e_stop="9753"/>
            <exon e_start="12057" e_stop="12241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7789" e_stop="8014" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.987">
            <gDNA_intron_boundary i_start="8015" i_stop="8742" i_length="728"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8743" e_stop="9310" e_length="568"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9311" i_stop="9443" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9444" e_stop="9753" e_length="310"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.831">
            <gDNA_intron_boundary i_start="9754" i_stop="12056" i_length="2303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12057" e_stop="12241" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7789" stop="8014"/>
              <exon start="8743" stop="9047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7822" stop="8014"/>
              <exon start="8743" stop="9310"/>
              <exon start="9444" stop="9516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8814" stop="9310"/>
              <exon start="9444" stop="9753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542087" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9010" stop="9310"/>
              <exon start="9444" stop="9753"/>
              <exon start="12057" stop="12241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542090" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9198" stop="9310"/>
              <exon start="9444" stop="9753"/>
              <exon start="12057" stop="12240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299963" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTTGTATTCATCTAAACCCCTGCTGCCAGCTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAG : GTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAG : GAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAG : GATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAAGGGAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAGT</gDNA_template>
            <first_frame> F  V  C  I  H  L  N  P  C  C  Q  L  L  F  L  P  F  F  F  L  T  P  K  P  T  T  I  H  A  P  I  L  T  L  I  Q  D  S  W  K  K  L  N  C  A  *  F  H  P  W  V  L  F  E  N  *  F  H  K  F  P  L  S  L  V  S  *  V  T  Q  S  C  F  H  K   : G  T  K  L  *  W  L  K  A  G  M  G  I  M  I  L  V  A  R  L  R  R  V  T  I  S  R  D  C  T  *  N  Q  F  M  M  H  S  Y  A  L  *  Q  N  K  *  C  R  I  L  L  L  W  K  M  A  *  L  L  R  G  K  L  L  R  N  G  S  R  S  V  G  I  V  E  E  S  L  F  A  L  *  H  I  E  I  *  K  A  Q  S  *  I  Q  V  *  L  Y  E  I  P  L  K  N  G  M  Q  G  M  K  L  H  K  L  I  W  L  A  D  H  Y  L  W  V  V  R  R  V  I  L  C  R  L  *  S  L  F  S  T  F  A  K  K  V  A  P  T  N  M  L  S  G  M  Q  I  S  Y  P  *  L  *  T  C  *  K  P  V  A  A  E  F  D  V  K  L  L  K  R  F  *  L  W  *  R  T  M  M  T  I  R :   K  Q  W  L  R  A  T  M  Y  A  Q  *  S  N  S  Y  Q  M  N  N  P  K  K  E  R  Q  P  F  L  C  C  M  S  Y  P  N  L  K  I  C  A  E  R  S  V  Q  L  M  G  P  F  *  F  W  L  G  W  P  A  A  N  L  R  I  L  *  L  L  K  R  L  R  I  L  W  R  I  W  K  S  V  R  L  M  *  N  K  W  Q  K  M  A  G  C  N  P  Y  *  L  Y  Y  L  K  :  D  H  Q  R  P  N  S  P  W  L  F  S  L  V  S  W  F  L  I  M  M  *  K  C  *  W  L  E  L  L  V  H  H  *  S  V  S  *  D  M  V  I  C  H  Q  G  R  L  L  *  N  L  *  I  K  Y  H  L  M  S  L   </first_frame>
            <second_frame>  L  F  V  F  I  *  T  P  A  A  S  S  F  S  F  L  S  S  S  S  P  P  N  Q  P  Q  S  M  P  P  F  *  P  *  F  K  I  H  G  R  N  *  I  V  L  N  F  I  L  G  F  C  L  R  I  D  F  I  N  S  L  *  V  L  *  A  E  *  H  S  L  V  F  I  K  :  V  Q  S  F  N  G  *  K  L  G  W  E  S  *  S  W  *  P  V  *  G  E  L  P  S  R  E  T  A  H  R  T  N  L  *  C  I  H  M  P  F  D  K  T  S  N  A  G  S  C  Y  S  G  K  W  H  D  F  *  E  G  S  Y  *  E  M  V  Q  G  V  *  G  *  W  K  K  A  C  L  P  F  N  T  *  R  S  E  K  H  R  A  E  S  K  Y  S  S  T  K  Y  H  *  R  M  E  C  K  E  *  S  C  T  N  *  Y  G  S  Q  I  I  I  Y  G  *  C  G  G  *  Y  Y  A  G  F  K  V  C  S  A  P  L  P  K  K  S  R  Q  Q  T  C  Y  Q  E  C  R  S  H  T  H  D  C  R  H  V  K  N  Q  *  P  Q  S  S  M  *  S  S  *  N  A  S  S  C  G  R  G  R  *  *  Q  *   : G  N  N  G  *  G  R  Q  C  T  H  N  S  Q  I  L  I  K  *  T  I  Q  R  K  R  G  S  H  F  F  A  V  *  A  I  Q  I  *  K  F  V  R  K  D  R  F  S  *  W  G  H  S  N  S  G  W  D  G  Q  Q  Q  I  *  E  S  C  D  C  *  K  G  *  E  Y  S  G  E  S  G  K  V  *  D  *  C  K  T  N  G  R  K  W  P  A  A  T  P  I  N  S  T  T  *  R :   I  I  R  D  Q  T  L  H  G  C  F  P  W  *  A  G  S  *  *  *  C  E  S  V  S  G  *  N  C  W  F  I  T  D  Q  Y  H  E  T  W  *  Y  V  I  K  G  G  C  S  K  I  S  K  S  N  I  I  *  *  V  *  </second_frame>
            <third_frame>   C  L  Y  S  S  K  P  L  L  P  A  P  F  P  S  F  L  L  P  H  P  Q  T  N  H  N  P  C  P  H  S  N  P  N  S  R  F  M  E  E  I  E  L  C  L  I  S  S  L  G  F  V  *  E  L  I  S  *  I  P  F  E  S  C  E  L  S  N  T  V  L  F  S  *  R :   Y  K  A  L  M  A  E  S  W  D  G  N  H  D  P  G  S  P  S  E  E  S  Y  H  L  E  R  L  H  I  E  P  I  Y  D  A  F  I  C  P  L  T  K  Q  V  M  Q  D  P  V  T  L  E  N  G  M  T  F  E  R  E  A  I  E  K  W  F  K  E  C  R  D  S  G  R  K  P  V  C  P  L  T  H  R  D  L  K  S  T  E  L  N  P  S  I  A  L  R  N  T  I  E  E  W  N  A  R  N  E  A  A  Q  I  D  M  A  R  R  S  L  S  M  G  S  A  E  G  D  I  M  Q  A  L  K  F  V  Q  H  L  C  Q  K  S  R  A  N  K  H  V  I  R  N  A  D  L  I  P  M  I  V  D  M  L  K  T  S  S  R  R  V  R  C  K  A  L  E  T  L  L  V  V  V  E  D  D  D  D  N  K  :  E  T  M  A  E  G  D  N  V  R  T  I  V  K  F  L  S  N  E  Q  S  K  E  R  E  A  A  I  S  L  L  Y  E  L  S  K  S  K  N  L  C  G  K  I  G  S  V  N  G  A  I  L  I  L  V  G  M  A  S  S  K  S  E  N  L  V  T  V  E  K  A  E  N  T  L  E  N  L  E  K  C  E  I  N  V  K  Q  M  A  E  N  G  R  L  Q  P  L  L  T  L  L  L  E   : G  S  S  E  T  K  L  S  M  A  V  F  L  G  E  L  V  L  N  N  D  V  K  V  L  V  A  R  T  V  G  S  S  L  I  S  I  M  R  H  G  N  M  S  S  R  E  A  A  L  K  S  L  N  Q  I  S  S  D  E  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8013" stop="8014"/>
                    <exon start="8743" stop="9310"/>
                    <exon start="9444" stop="9753"/>
                    <exon start="12057" stop="12241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYKALMAESWDGNHDPGSPSEESYHLERLHIEPIYDAFICPLTKQVMQDPVTLENGMTFEREAIEKWFKECRDSGRKPVCPLTHRDLKSTELNPSIALRNTIEEWNARNEAAQIDMARRSLSMGSAEGDIMQALKFVQHLCQKSRANKHVIRNADLIPMIVDMLKTSSRRVRCKALETLLVVVEDDDDNKETMAEGDNVRTIVKFLSNEQSKEREAAISLLYELSKSKNLCGKIGSVNGAILILVGMASSKSENLVTVEKAENTLENLEKCEINVKQMAENGRLQPLLTLLLEGSSETKLSMAVFLGELVLNNDVKVLVARTVGSSLISIMRHGNMSSREAALKSLNQISSDESS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15736" PGL_stop="14237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15736" e_stop="14237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15736" e_stop="14237" e_length="1500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15736" stop="15356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15489" stop="15071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15355" stop="14624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15355" stop="14968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14931" stop="14237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14648" stop="14365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGTGCTTATTGAGGCTTCCATTTATAAGTCTGGTGAATGCTAGGATGGTGTGCAAGAAATGGAGAAACTTGACACTGACACCTCGTTTCTGGCGAATGAGGCAGGAAGGTTCATTCCAGCGTCCATGGTTGTTTCTTTTTGGAGTTGTAAAAGATGGTTGTTGTTCCGCAGAAATACATGCATTTGATGTTTCCTTCAACCAATGGCACAAAATGAATTCTGAAGTTCTGAAAGGGAGGTTTTTATTCTCTGTTGCTGGTATCCATGATGATGTTTACGTCGTTGGAGGTTGTTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAATGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGATCCAGAGGCTTCCTGTAGATTTTGGAATAGCTTGTTCAGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATATTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGAGCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTTTGTTGTGGACGTTTGATGATGTTTAACTTAAATCTATATTCCATTTGTTTCTATTGATGTTATGCAGGTCATTCAATTGTTCTGTAATTTGTCTTTTGAGCAGTGAAATAATAAACTCTGGTTTTTAA</gDNA_template>
            <first_frame> K  C  A  Y  *  G  F  H  L  *  V  W  *  M  L  G  W  C  A  R  N  G  E  T  *  H  *  H  L  V  S  G  E  *  G  R  K  V  H  S  S  V  H  G  C  F  F  L  E  L  *  K  M  V  V  V  P  Q  K  Y  M  H  L  M  F  P  S  T  N  G  T  K  *  I  L  K  F  *  K  G  G  F  Y  S  L  L  L  V  S  M  M  M  F  T  S  L  E  V  V  L  A  L  L  T  L  G  R  L  I  R  A  H  S  R  H  I  K  A  C  S  L  L  V  P  *  *  E  C  G  V  K  L  H  Q  *  S  M  Q  D  H  P  L  S  *  V  L  M  R  S  V  Q  I  V  *  L  L  G  I  N  K  L  E  E  T  E  D  F  T  V  Q  E  L  V  V  C  L  M  F  M  K  I  L  I  D  F  Q  *  D  A  N  F  A  I  R  W  M  R  T  R  L  H  F  C  P  M  *  N  H  T  S  L  S  N  K  K  A  N  I  Q  I  K  I  K  D  A  F  S  *  L  L  *  E  V  S  V  A  G  M  S  L  W  I  L  G  K  F  M  I  P  C  Q  I  N  G  Q  R  S  R  G  F  L  *  I  L  E  *  L  V  Q  G  L  C  A  M  G  C  F  M  F  I  Q  K  V  I  S  *  Q  H  M  T  L  R  R  A  I  G  L  E  S  K  L  V  H  S  L  P  E  F  M  N  T  I  L  N  L  F  A  A  I  V  G  Y  S  C  S  L  S  P  G  V  K  G  K  V  R  L  A  G  E  T  K  Q  *  G  N  C  G  S  *  I  L  C  L  *  L  G  E  K  F  Q  S  I  Q  M  P  Q  W  I  G  M  L  H  L  *  L  I  K  T  L  Y  L  E  S  K  C  S  K  Y  S  G  R  C  *  T  S  *  P  L  E  M  *  L  M  L  E  *  T  G  A  I  S  Q  G  T  V  S  R  K  N  W  M  L  L  L  A  *  Q  N  P  W  Q  *  C  I  C  N  R  S  R  T  P  T  S  H  N  I  C  A  V  I  F  S  L  S  F  I  L  L  L  W  T  F  D  D  V  *  L  K  S  I  F  H  L  F  L  L  M  L  C  R  S  F  N  C  S  V  I  C  L  L  S  S  E  I  I  N  S  G  F  * </first_frame>
            <second_frame>  N  V  L  I  E  A  S  I  Y  K  S  G  E  C  *  D  G  V  Q  E  M  E  K  L  D  T  D  T  S  F  L  A  N  E  A  G  R  F  I  P  A  S  M  V  V  S  F  W  S  C  K  R  W  L  L  F  R  R  N  T  C  I  *  C  F  L  Q  P  M  A  Q  N  E  F  *  S  S  E  R  E  V  F  I  L  C  C  W  Y  P  *  *  C  L  R  R  W  R  L  F  *  H  C  *  L  W  E  G  *  *  E  L  I  Q  D  T  *  K  R  A  R  F  *  S  L  D  E  N  V  A  *  S  C  T  N  E  A  C  K  I  I  P  Y  L  R  Y  L  *  D  Q  F  R  L  F  N  Y  *  E  S  T  N  S  R  R  Q  K  I  L  P  S  K  S  W  W  C  V  *  C  L  *  R  S  S  *  T  F  S  E  T  P  I  S  P  F  A  G  *  E  R  G  Y  I  F  A  Q  C  E  T  I  Q  V  C  Q  T  K  K  R  T  F  K  *  R  S  K  T  L  S  L  D  C  C  R  R  S  R  L  L  G  *  A  S  G  F  W  G  N  L  *  F  H  V  K  *  M  D  R  D  P  E  A  S  C  R  F  W  N  S  L  F  R  G  C  V  Q  W  V  V  L  C  L  F  R  K  *  *  A  S  S  I  *  R  *  E  G  L  L  G  *  N  P  N  *  S  I  P  S  P  S  S  *  I  P  S  *  T  Y  L  L  Q  *  S  A  I  H  A  L  C  L  L  V  *  R  G  R  S  D  W  Q  E  K  Q  S  S  K  E  T  V  G  A  R  S  Y  A  S  N  L  E  R  S  F  N  P  S  R  C  P  N  G  L  E  C  C  I  Y  S  *  *  K  L  Y  I  W  S  R  N  V  Q  N  I  R  A  G  A  R  L  L  D  R  W  R  C  N  *  C  W  N  K  L  E  P  Y  L  K  E  P  S  R  A  R  I  G  C  C  F  L  L  D  K  I  H  G  S  S  A  F  V  T  D  Q  E  L  Q  L  V  T  I  Y  V  Q  S  F  F  L  S  P  L  F  F  C  C  G  R  L  M  M  F  N  L  N  L  Y  S  I  C  F  Y  *  C  Y  A  G  H  S  I  V  L  *  F  V  F  *  A  V  K  *  *  T  L  V  F   </second_frame>
            <third_frame>   M  C  L  L  R  L  P  F  I  S  L  V  N  A  R  M  V  C  K  K  W  R  N  L  T  L  T  P  R  F  W  R  M  R  Q  E  G  S  F  Q  R  P  W  L  F  L  F  G  V  V  K  D  G  C  C  S  A  E  I  H  A  F  D  V  S  F  N  Q  W  H  K  M  N  S  E  V  L  K  G  R  F  L  F  S  V  A  G  I  H  D  D  V  Y  V  V  G  G  C  S  S  I  A  N  F  G  K  V  D  K  S  S  F  K  T  H  K  S  V  L  A  F  S  P  L  M  R  M  W  R  K  A  A  P  M  K  H  A  R  S  S  P  I  L  G  T  Y  E  I  S  S  D  C  L  I  I  R  N  Q  Q  T  R  G  D  R  R  F  Y  R  P  R  V  G  G  V  S  D  V  Y  E  D  P  H  R  L  S  V  R  R  Q  F  R  H  S  L  D  E  N  E  V  T  F  L  P  N  V  K  P  Y  K  F  V  K  Q  K  S  E  H  S  N  K  D  Q  R  R  F  L  L  I  A  V  G  G  L  G  C  W  D  E  P  L  D  S  G  E  I  Y  D  S  M  S  N  K  W  T  E  I  Q  R  L  P  V  D  F  G  I  A  C  S  G  V  V  C  N  G  L  F  Y  V  Y  S  E  S  D  K  L  A  A  Y  D  V  E  K  G  Y  W  V  R  I  Q  T  S  P  F  P  P  R  V  H  E  Y  H  P  K  L  I  C  C  N  S  R  L  F  M  L  S  V  S  W  C  E  G  E  G  Q  I  G  R  R  N  K  A  V  R  K  L  W  E  L  D  L  M  P  L  T  W  R  E  V  S  I  H  P  D  A  P  M  D  W  N  A  A  F  I  A  D  K  N  S  I  F  G  V  E  M  F  K  I  F  G  Q  V  L  D  F  L  T  V  G  D  V  T  D  A  G  I  N  W  S  H  I  S  R  N  R  L  A  Q  E  L  D  A  A  S  C  L  T  K  S  M  A  V  V  H  L  *  P  I  K  N  S  N  *  S  Q  Y  M  C  S  H  F  F  S  L  L  Y  S  F  V  V  D  V  *  *  C  L  T  *  I  Y  I  P  F  V  S  I  D  V  M  Q  V  I  Q  L  F  C  N  L  S  F  E  Q  *  N  N  K  L  W  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15734" stop="14430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1302</number_coding_nucleotides>
                  <number_encoded_amino_acids>434</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MCLLRLPFISLVNARMVCKKWRNLTLTPRFWRMRQEGSFQRPWLFLFGVVKDGCCSAEIHAFDVSFNQWHKMNSEVLKGRFLFSVAGIHDDVYVVGGCSSIANFGKVDKSSFKTHKSVLAFSPLMRMWRKAAPMKHARSSPILGTYEISSDCLIIRNQQTRGDRRFYRPRVGGVSDVYEDPHRLSVRRQFRHSLDENEVTFLPNVKPYKFVKQKSEHSNKDQRRFLLIAVGGLGCWDEPLDSGEIYDSMSNKWTEIQRLPVDFGIACSGVVCNGLFYVYSESDKLAAYDVEKGYWVRIQTSPFPPRVHEYHPKLICCNSRLFMLSVSWCEGEGQIGRRNKAVRKLWELDLMPLTWREVSIHPDAPMDWNAAFIADKNSIFGVEMFKIFGQVLDFLTVGDVTDAGINWSHISRNRLAQELDAASCLTKSMAVVHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17442" PGL_stop="15838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17442" e_stop="17172"/>
            <exon e_start="16178" e_stop="15838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17442" e_stop="17172" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17171" i_stop="16179" i_length="993"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="16178" e_stop="15838" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17442" stop="17172"/>
              <exon start="16178" stop="15990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17389" stop="17172"/>
              <exon start="16178" stop="15838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTTGTAATGATAATTAGGTTCTTACCTATTTTGATTACAATTTGTGGGGATTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCTAAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAG : GATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGCAGAGGGGGTGGTTGCAAAGTGGGTGCTGACACTGGTGACGACCTAGGGGATTCATGCGGTAGAAGAAGATCAAATGCAAGTGAGGAAGGCAAAGGATATAACCCGATATGTGGAAATGAAGAAACGTCAGTAGATTGCTTCTCTTATGGGAT</gDNA_template>
            <first_frame> L  L  V  M  I  I  R  F  L  P  I  L  I  T  I  C  G  D  S  F  L  T  F  F  H  M  R  T  I  S  S  F  C  C  *  S  I  L  A  S  L  S  L  K  M  L  S  F  F  D  M  T  T  R  S  H  M  G  F  *  F  F  F  L  F  L  K  K  K  *  I  L  I  L  D  C  G  S  K  W  S  M  E  L  K  *  L  D  *  R   : G  *  *  D  D  I  R  K  I  Y  R  R  R  I  S  S  T  R  F  G  V  F  K  R  V  *  K  V  S  Q  K  C  E  P  K  V  E  K  E  E  P  *  K  W  R  R  R  R  G  *  Q  Q  G  H  F  L  E  M  S  N  T  I  W  Q  R  G  W  L  Q  S  G  C  *  H  W  *  R  P  R  G  F  M  R  *  K  K  I  K  C  K  *  G  R  Q  R  I  *  P  D  M  W  K  *  R  N  V  S  R  L  L  L  L  W  D </first_frame>
            <second_frame>  Y  L  *  *  *  L  G  S  Y  L  F  *  L  Q  F  V  G  I  P  F  *  H  S  F  T  *  G  P  F  H  L  S  V  V  D  P  F  L  L  H  S  A  *  R  C  F  L  F  L  I  *  Q  Q  D  L  I  W  G  S  D  F  F  F  F  F  *  K  K  N  E  S  *  F  L  I  V  D  P  N  G  L  W  S  S  N  D  L  I  K  E  :  D  N  K  M  T  S  E  R  F  T  G  E  E  S  L  Q  Q  D  L  E  S  L  S  V  S  K  R  L  V  R  S  V  S  Q  K  L  K  K  K  N  L  R  S  G  G  E  E  E  D  D  S  K  G  I  S  L  R  C  L  T  L  Y  G  R  G  G  G  C  K  V  G  A  D  T  G  D  D  L  G  D  S  C  G  R  R  R  S  N  A  S  E  E  G  K  G  Y  N  P  I  C  G  N  E  E  T  S  V  D  C  F  S  Y  G   </second_frame>
            <third_frame>   T  C  N  D  N  *  V  L  T  Y  F  D  Y  N  L  W  G  F  L  F  N  I  L  S  H  E  D  H  F  I  F  L  L  L  I  H  S  C  F  T  Q  L  K  D  A  F  F  F  *  Y  D  N  K  I  S  Y  G  V  L  I  F  F  S  F  S  K  K  K  M  N  L  D  S  *  L  W  I  Q  M  V  Y  G  A  Q  M  T  *  L  K  R :   I  I  R  *  H  Q  K  D  L  Q  E  K  N  L  F  N  K  I  W  S  L  *  A  C  L  K  G  *  S  E  V  *  A  K  S  *  K  R  R  T  L  E  V  E  E  K  K  R  M  T  A  R  A  F  P  *  D  V  *  H  Y  M  A  E  G  V  V  A  K  W  V  L  T  L  V  T  T  *  G  I  H  A  V  E  E  D  Q  M  Q  V  R  K  A  K  D  I  T  R  Y  V  E  M  K  K  R  Q  *  I  A  S  L  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17225" stop="17172"/>
                    <exon start="16178" stop="15840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIVDPNGLWSSNDLIKEDNKMTSERFTGEESLQQDLESLSVSKRLVRSVSQKLKKKNLRSGGEEEDDSKGISLRCLTLYGRGGGCKVGADTGDDLGDSCGRRRSNASEEGKGYNPICGNEETSVDCFSYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19695" PGL_stop="21238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19695" e_stop="19824"/>
            <exon e_start="20098" e_stop="20124"/>
            <exon e_start="20938" e_stop="21238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.977"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="19695" e_stop="19824" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="19825" i_stop="20097" i_length="273"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20098" e_stop="20124" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="20125" i_stop="20937" i_length="813"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20938" e_stop="21238" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19695" stop="19824"/>
              <exon start="20098" stop="20124"/>
              <exon start="20938" stop="21238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAATCGGGCAAATGGCGATTAAGCTGTATACGAGATCTATTGTTTTGATTGTTGTTATTGCTTTCTTATCGGTTTTGCCAGCTACGCTTTGCATCGAAGATAAATGTTCTGCTTGTTCCGCCATTGCT : GAGGAGCTCGAGCATGGACTATTGAAA : GAAAAGCCAAGAAACCATTTAGACATGAGACATCGCCTGGATTCTAAAGGTCAGCGTGAAGGGAAACTTATTGATTACAGGTCAAATATTAATGATCACCTTATTGATTAATAAGGTCTTTGCTAAAATCAATTCCTAATTGCTTTATTCTTTTACTTTTTCTTACAACTTCAAAATCTGTTACCCAGTTGTATATAAGAACTAACCTAGGTCACAGTTCAAAAATATTTCTCTATATCCCATCAACTTTCAGGTTGAAGAGCTCATTGATCTATCTGCTGTGTTGTTCGCTCATACCACA</gDNA_template>
            <first_frame> R  N  R  A  N  G  D  *  A  V  Y  E  I  Y  C  F  D  C  C  Y  C  F  L  I  G  F  A  S  Y  A  L  H  R  R  *  M  F  C  L  F  R  H  C   : *  G  A  R  A  W  T  I  E   : R  K  A  K  K  P  F  R  H  E  T  S  P  G  F  *  R  S  A  *  R  E  T  Y  *  L  Q  V  K  Y  *  *  S  P  Y  *  L  I  R  S  L  L  K  S  I  P  N  C  F  I  L  L  L  F  L  T  T  S  K  S  V  T  Q  L  Y  I  R  T  N  L  G  H  S  S  K  I  F  L  Y  I  P  S  T  F  R  L  K  S  S  L  I  Y  L  L  C  C  S  L  I  P   </first_frame>
            <second_frame>  E  I  G  Q  M  A  I  K  L  Y  T  R  S  I  V  L  I  V  V  I  A  F  L  S  V  L  P  A  T  L  C  I  E  D  K  C  S  A  C  S  A  I  A  :  E  E  L  E  H  G  L  L  K  :  E  K  P  R  N  H  L  D  M  R  H  R  L  D  S  K  G  Q  R  E  G  K  L  I  D  Y  R  S  N  I  N  D  H  L  I  D  *  *  G  L  C  *  N  Q  F  L  I  A  L  F  F  Y  F  F  L  Q  L  Q  N  L  L  P  S  C  I  *  E  L  T  *  V  T  V  Q  K  Y  F  S  I  S  H  Q  L  S  G  *  R  A  H  *  S  I  C  C  V  V  R  S  Y  H  </second_frame>
            <third_frame>   K  S  G  K  W  R  L  S  C  I  R  D  L  L  F  *  L  L  L  L  L  S  Y  R  F  C  Q  L  R  F  A  S  K  I  N  V  L  L  V  P  P  L  L :   R  S  S  S  M  D  Y  *  K :   K  S  Q  E  T  I  *  T  *  D  I  A  W  I  L  K  V  S  V  K  G  N  L  L  I  T  G  Q  I  L  M  I  T  L  L  I  N  K  V  F  A  K  I  N  S  *  L  L  Y  S  F  T  F  S  Y  N  F  K  I  C  Y  P  V  V  Y  K  N  *  P  R  S  Q  F  K  N  I  S  L  Y  P  I  N  F  Q  V  E  E  L  I  D  L  S  A  V  L  F  A  H  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19696" stop="19824"/>
                    <exon start="20098" stop="20124"/>
                    <exon start="20938" stop="21048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIGQMAIKLYTRSIVLIVVIAFLSVLPATLCIEDKCSACSAIAEELEHGLLKEKPRNHLDMRHRLDSKGQREGKLIDYRSNINDHLID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21045" stop="21236"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRSLLKSIPNCFILLLFLTTSKSVTQLYIRTNLGHSSKIFLYIPSTFRLKSSLIYLLCCSLIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="23610" PGL_stop="23780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23610" e_stop="23780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23610" e_stop="23780" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23610" stop="23780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23610" stop="23780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23611" stop="23780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</gDNA_template>
            <first_frame> F  P  *  K  Y  K  Q  F  V  T  S  S  Y  F  F  *  Y  F  *  L  N  T  T  Y  I  C  M  S  F  P  L  F  Y  W  T  M  Y  Q  S  S  H  V  V  L  K  I  N  *  F  Y  R  *  T  I  F  T  L </first_frame>
            <second_frame>  F  H  R  S  I  N  S  L  L  R  P  H  I  S  S  D  I  F  N  L  I  Q  H  T  F  V  C  P  S  L  F  F  I  G  P  C  I  S  H  P  M  L  Y  S  R  S  T  N  F  I  D  E  Q  Y  L  L   </second_frame>
            <third_frame>   S  I  E  V  *  T  V  C  Y  V  L  I  F  L  L  I  F  L  T  *  Y  N  I  H  L  Y  V  L  P  S  F  L  L  D  H  V  S  V  I  P  C  C  T  Q  D  Q  L  I  L  S  M  N  N  I  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="24590" PGL_stop="24260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24590" e_stop="24260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24590" e_stop="24260" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24590" stop="24266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24575" stop="24260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTGAATCTTCTAAAAAGTGTATTGGAAAGCAACTCATAACAAGATTCTGGGAAATGACATAGCCTACCAGTATAACTCCTCACTATGGGGACTCACGTCGCTTCCTCATTCCAACGTTTCACTCGCTTAGCTTATCGTAGTTTTTGAAAGCCTGTATATTGGAAGTGTGTTGTATCGATATAAGATTAGTGTGCGCGCTCCAGCTGCATTTCTTGTGATGTACAGATTCAAGAAAGCAACTCGTTTATTGTCCTTGTACTGCTTGTATGTTGGATTAGTACTGCATTTTGTAAATTTGAATTTGTTGGATATGTGATTAGTTAATGCTA</gDNA_template>
            <first_frame> D  *  I  F  *  K  V  Y  W  K  A  T  H  N  K  I  L  G  N  D  I  A  Y  Q  Y  N  S  S  L  W  G  L  T  S  L  P  H  S  N  V  S  L  A  *  L  I  V  V  F  E  S  L  Y  I  G  S  V  L  Y  R  Y  K  I  S  V  R  A  P  A  A  F  L  V  M  Y  R  F  K  K  A  T  R  L  L  S  L  Y  C  L  Y  V  G  L  V  L  H  F  V  N  L  N  L  L  D  M  *  L  V  N  A  </first_frame>
            <second_frame>  T  E  S  S  K  K  C  I  G  K  Q  L  I  T  R  F  W  E  M  T  *  P  T  S  I  T  P  H  Y  G  D  S  R  R  F  L  I  P  T  F  H  S  L  S  L  S  *  F  L  K  A  C  I  L  E  V  C  C  I  D  I  R  L  V  C  A  L  Q  L  H  F  L  *  C  T  D  S  R  K  Q  L  V  Y  C  P  C  T  A  C  M  L  D  *  Y  C  I  L  *  I  *  I  C  W  I  C  D  *  L  M  L </second_frame>
            <third_frame>   L  N  L  L  K  S  V  L  E  S  N  S  *  Q  D  S  G  K  *  H  S  L  P  V  *  L  L  T  M  G  T  H  V  A  S  S  F  Q  R  F  T  R  L  A  Y  R  S  F  *  K  P  V  Y  W  K  C  V  V  S  I  *  D  *  C  A  R  S  S  C  I  S  C  D  V  Q  I  Q  E  S  N  S  F  I  V  L  V  L  L  V  C  W  I  S  T  A  F  C  K  F  E  F  V  G  Y  V  I  S  *  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="29231" PGL_stop="24676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29231" e_stop="29083"/>
            <exon e_start="28461" e_stop="28210"/>
            <exon e_start="27195" e_stop="27001"/>
            <exon e_start="25935" e_stop="25730"/>
            <exon e_start="25108" e_stop="24676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.162" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29231" e_stop="29083" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.162">
            <gDNA_intron_boundary i_start="29082" i_stop="28462" i_length="621"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28461" e_stop="28210" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="28209" i_stop="27196" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27195" e_stop="27001" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27000" i_stop="25936" i_length="1065"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25935" e_stop="25730" e_length="206"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25729" i_stop="25109" i_length="621"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25108" e_stop="24676" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29231" stop="29083"/>
              <exon start="28461" stop="28210"/>
              <exon start="27195" stop="27033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29164" stop="29083"/>
              <exon start="28461" stop="28210"/>
              <exon start="27195" stop="27001"/>
              <exon start="25935" stop="25846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29138" stop="29083"/>
              <exon start="28461" stop="28210"/>
              <exon start="27195" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29131" stop="29083"/>
              <exon start="28461" stop="28320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28461" stop="28210"/>
              <exon start="27195" stop="27001"/>
              <exon start="25935" stop="25898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27148" stop="27001"/>
              <exon start="25935" stop="25730"/>
              <exon start="25108" stop="24911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25927" stop="25730"/>
              <exon start="25108" stop="24676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGCCTTTATTTTCTCAGTTGGATTTAGGGTCTCCATTTTTAGTAATTTCCATTCTTGGTTTCACCCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTG : CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTA : GATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGG : GTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAG : AAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTAGGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAAAGGCCCAAAAGGTTCTGCCTACCCCTTGAGTGCAGAGCCGGAGTTGCAGGAAACATTGTTGACCGAGGATGATGAGTTCCTAATCATGGGTTGCGATGGTCTATGGGATGTTATGAGCAGCCAATGTGCTGTTACGATGGCCCGGAAAGAACTCATGCTACATAATGACCCAGAAAGATGTTCAAGAGAACTGGTAAGGGAAGCCCTCAAGCGCAACACATGTGATAACTTAACA</gDNA_template>
            <first_frame> L  C  L  Y  F  L  S  W  I  *  G  L  H  F  *  *  F  P  F  L  V  S  P  P  L  L  P  K  K  G  *  S  S  V  T  S  T  K  I  S  S  F  G  V  R  F  K  S  F  C :   F  P  W  I  R  I  S  E  A  I  E  F  M  L  W  E  C  I  W  L  H  I  Q  I  F  H  H  H  L  L  *  *  K  G  V  T  V  R  R  I  H  L  L  L  K  M  N  Y  L  R  N  Q  M  K  *  R  Q  Q  V  I  S  H  Y  E  I  L  L  L  Y  S  I  Q  *  T  L  L  H  L  *  E  T  L  I  * :   I  L  K  *  L  R  R  V  S  N  T  L  L  R  D  N  Q  T  L  N  Q  Y  F  V  L  E  V  V  L  R  K  D  P  N  S  T  W  R  M  N  I  S  V  *  M  I  *  S  Y  M  L  M  K  L  Q  V  P  L  P  L  Q  H  F  M  G :   S  L  M  A  M  G  V  L  M  Q  H  Y  L  *  G  I  I  F  S  S  S  *  W  R  T  P  V  F  P  C  V  *  R  R  H  S  R  M  L  F  *  K  L  T  M  L  L  P  T  I  V  L  L  T  Y  T  L  A  P  Q  H  *  Q  L  *  C  L  E   : E  T  *  S  L  L  M  Q  E  I  V  V  L  C  *  G  N  E  V  K  P  L  S  C  L  R  T  T  N  Q  I  A  H  L  K  D  I  E  *  K  N  L  E  E  S  Y  M  T  D  T  *  T  D  S  Y  L  *  H  V  P  W  G  I  G  T  *  K  A  Q  K  V  L  P  T  P  *  V  Q  S  R  S  C  R  K  H  C  *  P  R  M  M  S  S  *  S  W  V  A  M  V  Y  G  M  L  *  A  A  N  V  L  L  R  W  P  G  K  N  S  C  Y  I  M  T  Q  K  D  V  Q  E  N  W  *  G  K  P  S  S  A  T  H  V  I  T  *   </first_frame>
            <second_frame>  C  A  F  I  F  S  V  G  F  R  V  S  I  F  S  N  F  H  S  W  F  H  P  L  Y  F  P  K  K  A  N  H  L  *  L  P  P  K  F  H  L  L  V  S  A  S  N  H  S   : A  F  R  G  *  E  S  L  R  L  L  N  L  C  S  G  N  A  Y  G  C  I  Y  R  F  F  T  T  I  C  Y  S  R  R  E  L  Q  *  G  E  Y  I  C  C  *  R  *  I  T  *  G  I  K  *  N  K  D  N  K  *  *  A  T  T  R  S  F  C  C  T  V  F  S  E  L  Y  C  T  C  R  R  R  *  F   : R  F  *  N  N  *  E  G  F  P  T  P  F  *  G  T  I  K  L  *  T  N  I  S  F  W  K  L  C  *  E  R  T  Q  T  V  H  G  G  *  T  Y  L  Y  R  *  S  N  H  T  C  *  *  N  C  R  F  H  F  P  C  S  I  L  W   : G  L  *  W  P  W  G  Y  *  C  S  I  I  C  E  E  *  Y  S  Q  V  H  N  G  G  P  L  F  S  H  V  F  R  E  G  T  Q  E  C  F  S  E  S  *  L  C  F  C  R  R  *  F  Y  *  H  I  L  W  H  H  S  I  D  S  S  N  V  W  K  :  K  H  D  R  C  *  C  R  R  L  S  C  C  A  R  E  T  R  *  S  H  *  V  V  *  G  P  Q  T  K  *  R  I  *  K  T  S  N  R  K  T  W  R  S  H  I  *  R  I  L  K  R  T  V  I  Y  S  T  C  L  G  G  L  A  H  E  R  P  K  R  F  C  L  P  L  E  C  R  A  G  V  A  G  N  I  V  D  R  G  *  *  V  P  N  H  G  L  R  W  S  M  G  C  Y  E  Q  P  M  C  C  Y  D  G  P  E  R  T  H  A  T  *  *  P  R  K  M  F  K  R  T  G  K  G  S  P  Q  A  Q  H  M  *  *  L  N  </second_frame>
            <third_frame>   V  P  L  F  S  Q  L  D  L  G  S  P  F  L  V  I  S  I  L  G  F  T  P  F  T  S  Q  K  R  L  I  I  C  D  F  H  Q  N  F  I  F  W  C  P  L  Q  I  I  L  :  L  S  V  D  K  N  L  *  G  Y  *  I  Y  A  L  G  M  H  M  A  A  Y  T  D  F  S  P  P  F  A  I  V  E  G  S  Y  S  K  E  N  T  S  A  V  K  D  E  L  L  E  E  S  N  E  I  K  T  T  S  D  K  P  L  R  D  P  S  V  V  Q  Y  S  V  N  S  T  A  L  V  G  D  A  D  L  :  D  F  E  I  T  E  K  G  F  Q  H  P  S  E  G  Q  S  N  F  E  P  I  F  R  S  G  S  C  A  E  K  G  P  K  Q  Y  M  E  D  E  H  I  C  I  D  D  L  I  I  H  V  N  E  I  A  G  S  T  S  P  A  A  F  Y  G  :  V  F  D  G  H  G  G  T  D  A  A  L  F  V  R  N  N  I  L  K  F  I  M  E  D  P  C  F  P  M  C  L  E  K  A  L  K  N  A  F  L  K  A  D  Y  A  F  A  D  D  S  S  I  D  I  Y  S  G  T  T  A  L  T  A  L  M  F  G  R :   N  M  I  V  A  N  A  G  D  C  R  A  V  L  G  K  R  G  K  A  I  E  L  S  K  D  H  K  P  N  S  A  S  E  R  H  R  I  E  K  L  G  G  V  I  Y  D  G  Y  L  N  G  Q  L  S  I  A  R  A  L  G  D  W  H  M  K  G  P  K  G  S  A  Y  P  L  S  A  E  P  E  L  Q  E  T  L  L  T  E  D  D  E  F  L  I  M  G  C  D  G  L  W  D  V  M  S  S  Q  C  A  V  T  M  A  R  K  E  L  M  L  H  N  D  P  E  R  C  S  R  E  L  V  R  E  A  L  K  R  N  T  C  D  N  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28428" stop="28210"/>
                    <exon start="27195" stop="27001"/>
                    <exon start="25935" stop="25730"/>
                    <exon start="25108" stop="24676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYALGMHMAAYTDFSPPFAIVEGSYSKENTSAVKDELLEESNEIKTTSDKPLRDPSVVQYSVNSTALVGDADLDFEITEKGFQHPSEGQSNFEPIFRSGSCAEKGPKQYMEDEHICIDDLIIHVNEIAGSTSPAAFYGVFDGHGGTDAALFVRNNILKFIMEDPCFPMCLEKALKNAFLKADYAFADDSSIDIYSGTTALTALMFGRNMIVANAGDCRAVLGKRGKAIELSKDHKPNSASERHRIEKLGGVIYDGYLNGQLSIARALGDWHMKGPKGSAYPLSAEPELQETLLTEDDEFLIMGCDGLWDVMSSQCAVTMARKELMLHNDPERCSRELVREALKRNTCDNLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="27126" PGL_stop="28466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27126" e_stop="27204"/>
            <exon e_start="28218" e_stop="28466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.452" acc_prob="0.733" e_score="0.924"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="27126" e_stop="27204" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.452" acc_prob="0.733">
            <gDNA_intron_boundary i_start="27205" i_stop="28217" i_length="1013"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="28218" e_stop="28466" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27126" stop="27204"/>
              <exon start="28218" stop="28466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299818" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATATTGGTTCAAAGTTTGATTGTCCCTCAGAAGGGTGTTGGAAACCCTTCTCAGTTATTTCAAAATCCTAGTAGAT : CGTCTCCTACAAGTGCAGTAGAGTTCACTGAATACTGTACAACAGAAGGATCTCGTAGTGGCTTATCACTTGTTGTCTTTATTTCATTTGATTCCTCAAGTAATTCATCTTTAACAGCAGATGTATTCTCCTTACTGTAACTCCCTTCTACTATAGCAAATGGTGGTGAAAAATCTGTATATGCAGCCATATGCATTCCCAGAGCATAAATTCAATAGCCTCAGAGATTCTTATCCACGGAAAGCTTGA</gDNA_template>
            <first_frame> E  I  L  V  Q  S  L  I  V  P  Q  K  G  V  G  N  P  S  Q  L  F  Q  N  P  S  R   : S  S  P  T  S  A  V  E  F  T  E  Y  C  T  T  E  G  S  R  S  G  L  S  L  V  V  F  I  S  F  D  S  S  S  N  S  S  L  T  A  D  V  F  S  L  L  *  L  P  S  T  I  A  N  G  G  E  K  S  V  Y  A  A  I  C  I  P  R  A  *  I  Q  *  P  Q  R  F  L  S  T  E  S  L  </first_frame>
            <second_frame>  K  Y  W  F  K  V  *  L  S  L  R  R  V  L  E  T  L  L  S  Y  F  K  I  L  V  D  :  R  L  L  Q  V  Q  *  S  S  L  N  T  V  Q  Q  K  D  L  V  V  A  Y  H  L  L  S  L  F  H  L  I  P  Q  V  I  H  L  *  Q  Q  M  Y  S  P  Y  C  N  S  L  L  L  *  Q  M  V  V  K  N  L  Y  M  Q  P  Y  A  F  P  E  H  K  F  N  S  L  R  D  S  Y  P  R  K  A  * </second_frame>
            <third_frame>   N  I  G  S  K  F  D  C  P  S  E  G  C  W  K  P  F  S  V  I  S  K  S  *  *  I :   V  S  Y  K  C  S  R  V  H  *  I  L  Y  N  R  R  I  S  *  W  L  I  T  C  C  L  Y  F  I  *  F  L  K  *  F  I  F  N  S  R  C  I  L  L  T  V  T  P  F  Y  Y  S  K  W  W  *  K  I  C  I  C  S  H  M  H  S  Q  S  I  N  S  I  A  S  E  I  L  I  H  G  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27126" stop="27204"/>
                    <exon start="28218" stop="28357"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILVQSLIVPQKGVGNPSQLFQNPSRSSPTSAVEFTEYCTTEGSRSGLSLVVFISFDSSSNSSLTADVFSLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="32777" PGL_stop="33514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32777" e_stop="33013"/>
            <exon e_start="33329" e_stop="33514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32777" e_stop="33013" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33014" i_stop="33328" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33329" e_stop="33514" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32777" stop="33013"/>
              <exon start="33329" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATAGTATGCTTTGGAGTGTGTTCAGACGGGTTGAGTAGGAATGGCACTTCAAGGCCTGCTGTTGTGAGTGTTGGAGCTATATTTACATTTGACTCTACAATTGGAAGAGCTGCCAAGATTGCAATTCAGGAGGCTGTGAAAGATGTTAATTCCAACTCTAGCATCCTCCAAGGAACCAAACTTGTTGTGCAGTTGCAAAATTCCAATTGCAGTGGGTTTCTTGGCATGGTTGGAG : CCTTGAAATTTATGGAGACTGATGTTGTTGCAGTAATAGGCCCACAATCTTCTGTAGTTGCCCATACCATATCCCATGTTGCCAATGAACTTCAAGTTCCTTTCTTATCATTTGCTGCTACTGATCCCACACTCTCCTCTCTTCAGTTCCCTTATTTTCTTAGGACAACTCAAAGTGATCTATACC</gDNA_template>
            <first_frame> V  *  Y  A  L  E  C  V  Q  T  G  *  V  G  M  A  L  Q  G  L  L  L  *  V  L  E  L  Y  L  H  L  T  L  Q  L  E  E  L  P  R  L  Q  F  R  R  L  *  K  M  L  I  P  T  L  A  S  S  K  E  P  N  L  L  C  S  C  K  I  P  I  A  V  G  F  L  A  W  L  E  :  P  *  N  L  W  R  L  M  L  L  Q  *  *  A  H  N  L  L  *  L  P  I  P  Y  P  M  L  P  M  N  F  K  F  L  S  Y  H  L  L  L  L  I  P  H  S  P  L  F  S  S  L  I  F  L  G  Q  L  K  V  I  Y  T </first_frame>
            <second_frame>  Y  S  M  L  W  S  V  F  R  R  V  E  *  E  W  H  F  K  A  C  C  C  E  C  W  S  Y  I  Y  I  *  L  Y  N  W  K  S  C  Q  D  C  N  S  G  G  C  E  R  C  *  F  Q  L  *  H  P  P  R  N  Q  T  C  C  A  V  A  K  F  Q  L  Q  W  V  S  W  H  G  W  S :   L  E  I  Y  G  D  *  C  C  C  S  N  R  P  T  I  F  C  S  C  P  Y  H  I  P  C  C  Q  *  T  S  S  S  F  L  I  I  C  C  Y  *  S  H  T  L  L  S  S  V  P  L  F  S  *  D  N  S  K  *  S  I   </second_frame>
            <third_frame>   I  V  C  F  G  V  C  S  D  G  L  S  R  N  G  T  S  R  P  A  V  V  S  V  G  A  I  F  T  F  D  S  T  I  G  R  A  A  K  I  A  I  Q  E  A  V  K  D  V  N  S  N  S  S  I  L  Q  G  T  K  L  V  V  Q  L  Q  N  S  N  C  S  G  F  L  G  M  V  G   : A  L  K  F  M  E  T  D  V  V  A  V  I  G  P  Q  S  S  V  V  A  H  T  I  S  H  V  A  N  E  L  Q  V  P  F  L  S  F  A  A  T  D  P  T  L  S  S  L  Q  F  P  Y  F  L  R  T  T  Q  S  D  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32779" stop="33013"/>
                    <exon start="33329" stop="33513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVCFGVCSDGLSRNGTSRPAVVSVGAIFTFDSTIGRAAKIAIQEAVKDVNSNSSILQGTKLVVQLQNSNCSGFLGMVGALKFMETDVVAVIGPQSSVVAHTISHVANELQVPFLSFAATDPTLSSLQFPYFLRTTQSDLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="36259" PGL_stop="36838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36259" e_stop="36838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36259" e_stop="36838" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36259" stop="36838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATATGGCTCTTTGTCGTTTTGATAATAAATTCAAGTTACACAGCAAGTTTGACCTCCATCCTCACTGTGCAACAATTATATTCTCCTATTAAAGGTATTGAGAGCTTGAAAGAAACTGATGAACCAATTGGGTACCAAGTTGGTTCTTTTGCAGAAAGGTATTTGGAGGAAATTGGTATACCAAAATCCAGACTTGTTCCCCTTGGGTCACCGGAAGAATATGCTACAGCACTTCAACGTGGTCCTGCAAACGGGGGTGTAGCTGCAGTGGTGGATGAAAGACCATACGTTGAACTTTTCCTGTCAAACCAGTGCAAATTCAGGATTGTAGGTCAAGAGTTCACCAAAAGTGGGTGGGGTTTTGTAAGTTTCTCTATTCCTACAGTTTTTTTCTTTTTTCCTCATTCTGTGTGCCCTCCTGCCTTTTCTATTTCCTTAATCCTAATTCTGTAAGTACACCTTGGTTTATTTTGTTGACTAAAATCTTGATGTCCTGGACATCTTGGTAGGATTTTGTAGCATATCACTAAGCACACTTCTATTTCAAGCCGAGTATTTGTGTAAAAATCATTGACGTC</gDNA_template>
            <first_frame> S  Y  G  S  L  S  F  *  *  *  I  Q  V  T  Q  Q  V  *  P  P  S  S  L  C  N  N  Y  I  L  L  L  K  V  L  R  A  *  K  K  L  M  N  Q  L  G  T  K  L  V  L  L  Q  K  G  I  W  R  K  L  V  Y  Q  N  P  D  L  F  P  L  G  H  R  K  N  M  L  Q  H  F  N  V  V  L  Q  T  G  V  *  L  Q  W  W  M  K  D  H  T  L  N  F  S  C  Q  T  S  A  N  S  G  L  *  V  K  S  S  P  K  V  G  G  V  L  *  V  S  L  F  L  Q  F  F  S  F  F  L  I  L  C  A  L  L  P  F  L  F  P  *  S  *  F  C  K  Y  T  L  V  Y  F  V  D  *  N  L  D  V  L  D  I  L  V  G  F  C  S  I  S  L  S  T  L  L  F  Q  A  E  Y  L  C  K  N  H  *  R  </first_frame>
            <second_frame>  H  M  A  L  C  R  F  D  N  K  F  K  L  H  S  K  F  D  L  H  P  H  C  A  T  I  I  F  S  Y  *  R  Y  *  E  L  E  R  N  *  *  T  N  W  V  P  S  W  F  F  C  R  K  V  F  G  G  N  W  Y  T  K  I  Q  T  C  S  P  W  V  T  G  R  I  C  Y  S  T  S  T  W  S  C  K  R  G  C  S  C  S  G  G  *  K  T  I  R  *  T  F  P  V  K  P  V  Q  I  Q  D  C  R  S  R  V  H  Q  K  W  V  G  F  C  K  F  L  Y  S  Y  S  F  F  L  F  S  S  F  C  V  P  S  C  L  F  Y  F  L  N  P  N  S  V  S  T  P  W  F  I  L  L  T  K  I  L  M  S  W  T  S  W  *  D  F  V  A  Y  H  *  A  H  F  Y  F  K  P  S  I  C  V  K  I  I  D  V </second_frame>
            <third_frame>   I  W  L  F  V  V  L  I  I  N  S  S  Y  T  A  S  L  T  S  I  L  T  V  Q  Q  L  Y  S  P  I  K  G  I  E  S  L  K  E  T  D  E  P  I  G  Y  Q  V  G  S  F  A  E  R  Y  L  E  E  I  G  I  P  K  S  R  L  V  P  L  G  S  P  E  E  Y  A  T  A  L  Q  R  G  P  A  N  G  G  V  A  A  V  V  D  E  R  P  Y  V  E  L  F  L  S  N  Q  C  K  F  R  I  V  G  Q  E  F  T  K  S  G  W  G  F  V  S  F  S  I  P  T  V  F  F  F  F  P  H  S  V  C  P  P  A  F  S  I  S  L  I  L  I  L  *  V  H  L  G  L  F  C  *  L  K  S  *  C  P  G  H  L  G  R  I  L  *  H  I  T  K  H  T  S  I  S  S  R  V  F  V  *  K  S  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36261" stop="36713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLKETDEPIGYQVGSFAERYLEEIGIPKSRLVPLGSPEEYATALQRGPANGGVAAVVDERPYVELFLSNQCKFRIVGQEFTKSGWGFVSFSIPTVFFFFPHSVCPPAFSISLILIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="36900" PGL_stop="37571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36900" e_stop="37571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36900" e_stop="37571" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36900" stop="37564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36938" stop="37361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATCATGATGTTTTTCTCTGTCATTTTGTGCTTGTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTCTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACCAAAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTTAACTGTATATTAGCACAATTTTTACACAATCAATATCATTTAGTAGCTTCAACTCTGATACTTTTTC</gDNA_template>
            <first_frame> Q  K  S  *  C  F  S  L  S  F  C  A  C  Y  S  D  S  G  I  S  S  G  L  S  V  G  S  R  L  V  N  C  N  F  N  T  I  R  E  W  R  P  P  A  D  T  *  Q  V  V  S  K  K  C  M  Q  F  R  Q  C  *  A  *  I  R  S  P  S  L  E  K  L  F  R  P  L  S  Y  M  W  D  C  M  L  Y  C  S  P  N  I  F  H  P  D  S  A  *  I  L  P  D  F  Q  R  C  S  *  F  G  W  S  E  Y  Y  F  T  F  Q  T  S  S  N  F  A  V  N  Y  *  *  E  I  K  *  R  Q  Q  A  K  E  N  R  Q  I  S  F  *  *  Q  H  R  K  *  L  G  K  G  F  Q  V  D  R  N  T  G  S  F  S  K  *  N  S  L  V  Q  L  C  Q  L  T  F  L  I  G  F  L  P  K  F  Q  F  *  Q  H  R  I  V  Y  K  I  Q  L  L  T  V  Y  *  H  N  F  Y  T  I  N  I  I  *  *  L  Q  L  *  Y  F  F </first_frame>
            <second_frame>  R  N  H  D  V  F  L  C  H  F  V  L  V  I  L  I  Q  A  F  P  R  D  S  P  L  A  V  D  L  S  T  A  I  L  T  L  S  E  N  G  D  L  Q  R  I  H  D  K  W  L  A  R  S  A  C  S  L  D  N  A  E  L  E  S  D  R  L  H  L  R  S  F  S  G  L  F  L  I  C  G  I  A  C  F  I  A  L  L  I  Y  F  I  Q  I  L  R  K  F  C  R  T  S  N  A  A  V  D  S  D  G  Q  N  T  T  S  R  S  K  R  L  Q  T  L  L  S  I  I  D  E  K  S  N  R  G  S  K  R  R  K  I  D  R  S  V  S  D  D  N  I  E  N  D  L  G  R  D  S  R  W  I  E  T  Q  V  P  S  Q  N  E  I  H  *  F  N  Y  A  S  L  H  F  L  *  G  S  Y  Q  S  F  N  F  D  N  I  E  L  F  I  R  F  S  C  *  L  Y  I  S  T  I  F  T  Q  S  I  S  F  S  S  F  N  S  D  T  F   </second_frame>
            <third_frame>   E  I  M  M  F  F  S  V  I  L  C  L  L  F  *  F  R  H  F  L  G  T  L  R  W  Q  S  T  C  Q  L  Q  F  *  H  Y  Q  R  M  E  T  S  S  G  Y  M  T  S  G  *  Q  E  V  H  A  V  *  T  M  L  S  L  N  Q  I  A  F  T  *  E  A  F  Q  A  S  F  L  Y  V  G  L  H  A  L  L  L  S  *  Y  I  S  S  R  F  C  V  N  F  A  G  L  P  T  L  Q  L  I  R  M  V  R  I  L  L  H  V  P  N  V  F  K  L  C  C  Q  L  L  M  R  N  Q  I  E  A  A  S  E  G  K  S  T  D  Q  F  L  M  T  T  *  K  M  T  W  E  G  I  P  G  G  *  K  H  R  F  L  L  K  M  K  F  I  S  S  I  M  P  A  Y  I  S  Y  R  V  L  T  K  V  S  I  L  T  T  *  N  C  L  *  D  S  A  V  N  C  I  L  A  Q  F  L  H  N  Q  Y  H  L  V  A  S  T  L  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36901" stop="37416"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNHDVFLCHFVLVILIQAFPRDSPLAVDLSTAILTLSENGDLQRIHDKWLARSACSLDNAELESDRLHLRSFSGLFLICGIACFIALLIYFIQILRKFCRTSNAAVDSDGQNTTSRSKRLQTLLSIIDEKSNRGSKRRKIDRSVSDDNIENDLGRDSRWIETQVPSQNEIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="38496" PGL_stop="37790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38496" e_stop="38480"/>
            <exon e_start="38339" e_stop="37790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="38496" e_stop="38480" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38479" i_stop="38340" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="38339" e_stop="37790" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38496" stop="38480"/>
              <exon start="38339" stop="37790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAATCCAGAGCTAAG : GGCCAAAAGCAGTAGAGGTATTGCATCATCCTTTCTTTTGGAATTCTGAGATGCGACTCTCATTCCTCCGAGACGCCAGTGATAGAGTGGAATTAGAGGATAGAGAAGATGGATCTGAACTTTTGGGAGCACTGGAAAGTGTTAAGACCGTGGCATTGGGTGGTCTGTGGAATGATAAAATGGATAGTGCATTTATCAATGACATTGGTCGCTACAGGCGTTACAAATACGATAGTGTCCGCGATTTGTTGCGTGTTATCAGAAATAAGTTAAACCATTACAGAGAGCTTTCAAAGGAAATACAGGGAATTCTTGGACAGGTTCCTGAAGGTTTTGAGAGCTATTTCTCCACCAGGTTTCCTAGACTTGTAATTGAGGTCTACAAAGTACTTCATACCTATTGTTTAGAGGAAGATATCTTTCAAAAATACTTCAAAGGCAATCAAAATTAGCTCAATACTATCTACATATTAAACCTATGTACATATTGTAATTTATAATTATAATAATTATGAATAAGTGGAAAGCTTCAAATTAAAATAAGCATCAG</gDNA_template>
            <first_frame> P  N  P  E  L  R :   A  K  S  S  R  G  I  A  S  S  F  L  L  E  F  *  D  A  T  L  I  P  P  R  R  Q  *  *  S  G  I  R  G  *  R  R  W  I  *  T  F  G  S  T  G  K  C  *  D  R  G  I  G  W  S  V  E  *  *  N  G  *  C  I  Y  Q  *  H  W  S  L  Q  A  L  Q  I  R  *  C  P  R  F  V  A  C  Y  Q  K  *  V  K  P  L  Q  R  A  F  K  G  N  T  G  N  S  W  T  G  S  *  R  F  *  E  L  F  L  H  Q  V  S  *  T  C  N  *  G  L  Q  S  T  S  Y  L  L  F  R  G  R  Y  L  S  K  I  L  Q  R  Q  S  K  L  A  Q  Y  Y  L  H  I  K  P  M  Y  I  L  *  F  I  I  I  I  I  M  N  K  W  K  A  S  N  *  N  K  H  Q </first_frame>
            <second_frame>  Q  I  Q  S  *   : G  P  K  A  V  E  V  L  H  H  P  F  F  W  N  S  E  M  R  L  S  F  L  R  D  A  S  D  R  V  E  L  E  D  R  E  D  G  S  E  L  L  G  A  L  E  S  V  K  T  V  A  L  G  G  L  W  N  D  K  M  D  S  A  F  I  N  D  I  G  R  Y  R  R  Y  K  Y  D  S  V  R  D  L  L  R  V  I  R  N  K  L  N  H  Y  R  E  L  S  K  E  I  Q  G  I  L  G  Q  V  P  E  G  F  E  S  Y  F  S  T  R  F  P  R  L  V  I  E  V  Y  K  V  L  H  T  Y  C  L  E  E  D  I  F  Q  K  Y  F  K  G  N  Q  N  *  L  N  T  I  Y  I  L  N  L  C  T  Y  C  N  L  *  L  *  *  L  *  I  S  G  K  L  Q  I  K  I  S  I   </second_frame>
            <third_frame>   K  S  R  A  K  :  G  Q  K  Q  *  R  Y  C  I  I  L  S  F  G  I  L  R  C  D  S  H  S  S  E  T  P  V  I  E  W  N  *  R  I  E  K  M  D  L  N  F  W  E  H  W  K  V  L  R  P  W  H  W  V  V  C  G  M  I  K  W  I  V  H  L  S  M  T  L  V  A  T  G  V  T  N  T  I  V  S  A  I  C  C  V  L  S  E  I  S  *  T  I  T  E  S  F  Q  R  K  Y  R  E  F  L  D  R  F  L  K  V  L  R  A  I  S  P  P  G  F  L  D  L  *  L  R  S  T  K  Y  F  I  P  I  V  *  R  K  I  S  F  K  N  T  S  K  A  I  K  I  S  S  I  L  S  T  Y  *  T  Y  V  H  I  V  I  Y  N  Y  N  N  Y  E  *  V  E  S  F  K  L  K  *  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38480" stop="37888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPKAVEVLHHPFFWNSEMRLSFLRDASDRVELEDREDGSELLGALESVKTVALGGLWNDKMDSAFINDIGRYRRYKYDSVRDLLRVIRNKLNHYRELSKEIQGILGQVPEGFESYFSTRFPRLVIEVYKVLHTYCLEEDIFQKYFKGNQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="40666" PGL_stop="38567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40666" e_stop="40497"/>
            <exon e_start="39267" e_stop="39095"/>
            <exon e_start="38726" e_stop="38567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.653" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40666" e_stop="40497" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.653">
            <gDNA_intron_boundary i_start="40496" i_stop="39268" i_length="1229"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39267" e_stop="39095" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="39094" i_stop="38727" i_length="368"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38726" e_stop="38567" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40666" stop="40497"/>
              <exon start="39267" stop="39095"/>
              <exon start="38726" stop="38567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40497"/>
              <exon start="39267" stop="39095"/>
              <exon start="38726" stop="38627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAG : AGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAGGGGACATGTCTTCATTAACCAAAAATTCCACTG : GCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACGGCAGACACGTGCTGTGGATTTATTCAGTTTAGGCTGTGTACTCTTTTTCTGCATAACCGGGGGAAAACATCCGTATGGGGATAGTTTTGAACGTGATGTAAATATAGTTAA</gDNA_template>
            <first_frame> I  S  S  V  T  C  S  Y  Q  K  Q  F  S  G  D  D  Q  D  A  G  C  L  S  D  C  T  V  K  V  Q  W  K  S  G  D  K  D  D  F  P  L  W  K  P  S  G  Y  P  S  A  H  L  L  K  L  M  R :   D  M  V  H  G  L  A  H  L  H  E  L  G  I  V  H  R  D  L  K  P  Q  N  I  L  I  V  K  E  R  S  V  S  A  K  L  S  D  M  G  I  S  K  H  L  A  G  D  M  S  S  L  T  K  N  S  T   : G  S  G  S  S  G  W  Q  A  P  E  Q  L  R  H  E  R  Q  T  R  A  V  D  L  F  S  L  G  C  V  L  F  F  C  I  T  G  G  K  H  P  Y  G  D  S  F  E  R  D  V  N  I  V   </first_frame>
            <second_frame>  Y  H  Q  S  P  A  P  T  K  N  N  F  L  E  M  T  R  M  P  V  V  *  V  T  A  L  *  K  F  N  G  N  L  E  T  R  M  T  S  R  Y  G  S  P  V  D  I  L  Q  L  T  C  *  N  *  *   : E  I  W  F  M  A  L  L  I  C  M  N  W  E  L  Y  T  V  T  *  S  L  R  I  F  L  *  *  K  R  D  L  *  V  Q  S  F  Q  I  W  V  S  A  S  I  L  Q  G  T  C  L  H  *  P  K  I  P  L  :  A  L  G  V  Q  V  G  K  H  L  S  N  F  V  M  N  G  R  H  V  L  W  I  Y  S  V  *  A  V  Y  S  F  S  A  *  P  G  E  N  I  R  M  G  I  V  L  N  V  M  *  I  *  L  </second_frame>
            <third_frame>   I  I  S  H  L  L  L  P  K  T  I  F  W  R  *  P  G  C  R  L  F  K  *  L  H  C  K  S  S  M  E  I  W  R  Q  G  *  L  P  V  M  E  A  Q  W  I  S  F  S  S  P  V  K  I  D  E  :  R  Y  G  S  W  P  C  S  F  A  *  T  G  N  C  T  P  *  L  E  A  S  E  Y  S  Y  S  K  R  E  I  C  K  C  K  A  F  R  Y  G  Y  Q  Q  A  S  C  R  G  H  V  F  I  N  Q  K  F  H  W :   L  W  E  F  R  L  A  S  T  *  A  T  S  S  *  T  A  D  T  C  C  G  F  I  Q  F  R  L  C  T  L  F  L  H  N  R  G  K  T  S  V  W  G  *  F  *  T  *  C  K  Y  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40666" stop="40497"/>
                    <exon start="39267" stop="39095"/>
                    <exon start="38726" stop="38569"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSVTCSYQKQFSGDDQDAGCLSDCTVKVQWKSGDKDDFPLWKPSGYPSAHLLKLMRDMVHGLAHLHELGIVHRDLKPQNILIVKERSVSAKLSDMGISKHLAGDMSSLTKNSTGSGSSGWQAPEQLRHERQTRAVDLFSLGCVLFFCITGGKHPYGDSFERDVNIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="49233" PGL_stop="46295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49233" e_stop="49054"/>
            <exon e_start="48870" e_stop="48763"/>
            <exon e_start="48401" e_stop="48240"/>
            <exon e_start="48143" e_stop="47976"/>
            <exon e_start="47621" e_stop="47461"/>
            <exon e_start="47376" e_stop="47315"/>
            <exon e_start="47233" e_stop="47184"/>
            <exon e_start="47078" e_stop="46672"/>
            <exon e_start="46596" e_stop="46295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49233" e_stop="49054" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48870" e_stop="48763" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48401" e_stop="48240" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48143" e_stop="47976" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47621" e_stop="47461" e_length="161"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47376" e_stop="47315" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47233" e_stop="47184" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.903">
            <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47078" e_stop="46672" e_length="407"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46596" e_stop="46295" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49233" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49231" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49231" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49230" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49208" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49200" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="48082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49194" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49192" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="48079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49184" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49184" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49184" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49176" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49169" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="47013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49164" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49163" stop="49054"/>
              <exon start="48870" stop="48803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49160" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49158" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49158" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49154" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49154" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49154" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49153" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="47057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49152" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="48013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49152" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="48031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49149" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="48035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49148" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="47063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49148" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49145" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49142" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49133" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="47048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49126" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="48050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49114" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="48103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49105" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="47015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48109" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48028" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47997" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47590" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47552" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47372" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47205" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47205" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47205" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47078" stop="46715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46965" stop="46672"/>
              <exon start="46596" stop="46329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46923" stop="46672"/>
              <exon start="46596" stop="46342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578061" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46869" stop="46672"/>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46851" stop="46672"/>
              <exon start="46596" stop="46314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46823" stop="46672"/>
              <exon start="46596" stop="46342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46675" stop="46672"/>
              <exon start="46596" stop="46304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46675" stop="46672"/>
              <exon start="46596" stop="46304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46675" stop="46672"/>
              <exon start="46596" stop="46304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG : AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG : ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC : GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG : GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG : CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG : GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG : AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG : CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</gDNA_template>
            <first_frame> M  V  G  T  N  H  I  L  N  H  I  Y  Q  K  R  S  S  F  P  Q  D  H  L  V  A  A  M  A  S  H  A  A  L  A  S  S  R  I  P  T  S  T  R  L  P  S  N  K  N  S  Y  S  F  P  T  Q  C  L  S  K  :  K  F  E  V  A  E  F  S  G  L  R  S  S  G  C  V  T  F  S  N  R  E  S  S  F  F  D  V  V  S  A  Q  L  T  P  K  :  T  T  G  S  A  P  A  K  G  E  T  V  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  V  V  V  N  D  S  G  G  V  K  N  :  A  S  H  L  L  K  Y  D  S  M  L  G  T  F  K  A  D  V  K  I  V  D  N  E  T  I  S  V  D  G  K  H  I  K  V  V  S  S  R  D  P  L  K  L  P  W  A  E  L  G  I  D  I  V  I  E  :  G  T  G  V  F  V  D  G  P  G  A  G  K  H  I  Q  A  G  A  K  K  V  I  I  T  A  P  A  K  G  A  D  I  P  T  Y  V  V  G  V  N  E  Q  D  Y  S  H  E  I  A  N  I  I  S :   N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  M  D  E  E  L   : G  I  V  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  :  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  S  L  V  L  P  Q  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  N  V  E  K  K  G  I  T  A  E  D  V  N  A  A  F  R  K  A  A  D  G  P  L  K  G  I  L  D  V  C  D  A  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  I  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  V  A  W  Y  D  N  E  W  G  Y  S :   Q  R  V  V  D  L  A  H  L  V  A  S  K  W  P  G  V  A  A  P  G  S  G  D  P  L  D  E  F  C  E  T  N  P  S  D  E  E  C  K  V  Y  E  *  D  I  F  V  I  I  *  E  Q  Q  *  F  C  Y  L  H  V  *  C  V  K  L  S  G  K  S  H  *  L  K  K  I  I  S  H  S  Y  E  F  F  L  Y  R  F  N  R  D  *  E  *  I  *  *  S  Q  F  </first_frame>
            <second_frame>  W  W  E  Q  T  I  F  *  T  I  Y  T  K  K  E  V  A  F  L  K  I  I  *  L  Q  P  W  L  L  M  Q  L  W  L  L  H  E  F  L  Q  A  Q  G  F  L  P  I  R  T  P  T  H  S  P  H  N  V  Y  P  R :   N  L  K  *  L  N  F  L  V  *  D  Q  V  D  V  *  L  F  P  T  E  S  L  L  S  L  M  L  S  L  H  N  S  L  Q  R :   L  Q  D  Q  P  R  L  R  E  K  L  L  L  N  *  R  L  L  S  T  V  L  V  E  L  V  G  I  S  S  D  A  G  M  V  A  K  T  H  H  L  M  L  W  L  S  M  T  V  A  V  S  R  T :   H  L  T  C  *  S  M  I  Q  C  W  E  H  S  K  L  M  S  K  *  W  I  M  K  P  L  V  L  M  E  S  T  S  R  *  F  L  A  G  I  P  S  S  F  L  G  L  N  L  A  L  T  L  L  L  R :   E  L  V  C  L  L  M  V  Q  V  Q  G  S  T  S  K  L  V  P  R  K  L  S  S  L  H  Q  Q  K  V  L  T  F  Q  P  M  L  L  E  *  T  S  K  T  T  L  M  R  L  L  T  S  *   : A  M  P  L  A  P  L  T  A  W  L  H  L  *  K  S  W  M  K  N  L  :  E  L  *  R  V  Q  *  Q  Q  L  T  L  T  P  E  I  R :   G  F  S  M  L  H  T  V  T  *  G  E  R  E  Q  Q  H  *  T  L  S  Q  P  V  L  V  Q  P  R  Q  C  L  *  C  Y  L  S  S  R  G  S  *  M  A  L  L  S  E  C  Q  H  L  T  S  Q  S  L  T  L  L  S  T  S  R  R  K  E  L  Q  L  R  M  *  M  Q  H  S  E  R  L  L  M  V  H  *  K  A  Y  *  M  C  V  M  P  L  L  F  Q  L  T  S  D  A  L  T  F  H  P  P  S  T  P  P  *  P  W  S  W  E  M  I  W  S  R  S  L  L  G  M  T  T  S  G  D  T   : A  K  E  L  W  T  W  L  I  *  *  Q  A  N  G  Q  V  L  Q  H  Q  E  V  E  T  H  W  M  S  S  V  R  Q  I  L  L  M  R  N  A  K  S  M  N  K  T  F  L  L  *  F  E  N  N  S  S  F  V  I  Y  M  F  D  V  *  N  *  V  G  S  P  I  S  L  R  K  *  Y  H  T  R  M  N  S  F  Y  I  D  L  I  E  I  E  N  K  F  D  D  L  N  S </second_frame>
            <third_frame>   G  G  N  K  P  Y  F  K  P  Y  I  P  K  K  K  *  L  S  S  R  S  F  S  C  S  H  G  F  S  C  S  F  G  F  F  T  N  S  Y  K  H  K  A  S  F  Q  *  E  L  L  L  I  P  H  T  M  F  I  Q   : E  I  *  S  S  *  I  F  W  S  K  I  K  W  M  C  D  F  F  Q  Q  R  V  F  F  L  *  C  C  L  C  T  T  H  S  K   : D  Y  R  I  S  P  G  *  G  R  N  C  C  *  I  E  G  C  Y  Q  R  F  W  *  N  W  *  E  F  P  P  M  L  A  W  S  Q  R  L  T  T  *  C  C  G  C  Q  *  Q  W  R  C  Q  E   : R  I  S  L  A  K  V  *  F  N  A  G  N  I  Q  S  *  C  Q  N  S  G  *  *  N  H  *  C  *  W  K  A  H  Q  G  S  F  *  Q  G  S  P  Q  A  S  L  G  *  T  W  H  *  H  C  Y  *   : G  N  W  C  V  C  *  W  S  R  C  R  E  A  H  P  S  W  C  Q  E  S  Y  H  H  C  T  S  K  R  C  *  H  S  N  L  C  C  W  S  E  R  A  R  L  L  S  *  D  C  *  H  H  K  :  Q  C  L  L  H  H  *  L  L  G  S  I  C  E  S  H  G  *  R  T  W :   N  C  E  G  Y  N  D  N  N  S  L  L  H  R  R  S   : E  A  S  R  C  F  T  P  *  L  K  E  S  E  S  S  S  I  E  H  C  P  N  Q  Y  W  C  S  Q  G  S  V  F  S  A  T  S  A  Q  G  E  A  E  W  H  C  S  P  S  A  N  T  *  R  L  S  R  *  P  C  C  Q  R  R  E  E  R  N  Y  S  *  G  C  E  C  S  I  Q  K  G  C  *  W  S  T  E  R  H  I  R  C  V  *  C  P  S  C  F  S  *  L  P  M  L  *  R  F  I  H  H  R  L  L  L  D  H  G  H  G  R  *  Y  G  Q  G  R  C  L  V  *  Q  R  V  G  I  Q  :  P  K  S  C  G  L  G  S  S  S  S  K  Q  M  A  R  C  C  S  T  R  K  W  R  P  I  G  *  V  L  *  D  K  S  F  *  *  G  M  Q  S  L  *  I  R  H  F  C  Y  N  L  R  T  T  V  V  L  L  S  T  C  L  M  C  K  T  E  W  E  V  P  L  A  *  E  N  N  I  T  L  V  *  I  L  S  I  S  I  *  S  R  L  R  I  N  L  M  I  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49233" stop="49054"/>
                    <exon start="48870" stop="48763"/>
                    <exon start="48401" stop="48240"/>
                    <exon start="48143" stop="47976"/>
                    <exon start="47621" stop="47461"/>
                    <exon start="47376" stop="47315"/>
                    <exon start="47233" stop="47184"/>
                    <exon start="47078" stop="46672"/>
                    <exon start="46596" stop="46464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGTNHILNHIYQKRSSFPQDHLVAAMASHAALASSRIPTSTRLPSNKNSYSFPTQCLSKKFEVAEFSGLRSSGCVTFSNRESSFFDVVSAQLTPKTTGSAPAKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEIANIISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILDVCDAPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGVAAPGSGDPLDEFCETNPSDEECKVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47079" e_stop="46672"/>
            <exon e_start="46596" e_stop="46295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="47079" e_stop="46672" e_length="408"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46596" e_stop="46295" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47079" stop="46672"/>
              <exon start="46596" stop="46503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47078" stop="46715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46965" stop="46672"/>
              <exon start="46596" stop="46329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46923" stop="46672"/>
              <exon start="46596" stop="46342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578061" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46869" stop="46672"/>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46851" stop="46672"/>
              <exon start="46596" stop="46314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46823" stop="46672"/>
              <exon start="46596" stop="46342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46675" stop="46672"/>
              <exon start="46596" stop="46304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46675" stop="46672"/>
              <exon start="46596" stop="46304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46675" stop="46672"/>
              <exon start="46596" stop="46304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG : CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</gDNA_template>
            <first_frame> E  A  S  R  C  F  T  P  *  L  K  E  S  E  S  S  S  I  E  H  C  P  N  Q  Y  W  C  S  Q  G  S  V  F  S  A  T  S  A  Q  G  E  A  E  W  H  C  S  P  S  A  N  T  *  R  L  S  R  *  P  C  C  Q  R  R  E  E  R  N  Y  S  *  G  C  E  C  S  I  Q  K  G  C  *  W  S  T  E  R  H  I  R  C  V  *  C  P  S  C  F  S  *  L  P  M  L  *  R  F  I  H  H  R  L  L  L  D  H  G  H  G  R  *  Y  G  Q  G  R  C  L  V  *  Q  R  V  G  I  Q  :  P  K  S  C  G  L  G  S  S  S  S  K  Q  M  A  R  C  C  S  T  R  K  W  R  P  I  G  *  V  L  *  D  K  S  F  *  *  G  M  Q  S  L  *  I  R  H  F  C  Y  N  L  R  T  T  V  V  L  L  S  T  C  L  M  C  K  T  E  W  E  V  P  L  A  *  E  N  N  I  T  L  V  *  I  L  S  I  S  I  *  S  R  L  R  I  N  L  M  I  S  I   </first_frame>
            <second_frame>  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  S  L  V  L  P  Q  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  N  V  E  K  K  G  I  T  A  E  D  V  N  A  A  F  R  K  A  A  D  G  P  L  K  G  I  L  D  V  C  D  A  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  I  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  V  A  W  Y  D  N  E  W  G  Y  S :   Q  R  V  V  D  L  A  H  L  V  A  S  K  W  P  G  V  A  A  P  G  S  G  D  P  L  D  E  F  C  E  T  N  P  S  D  E  E  C  K  V  Y  E  *  D  I  F  V  I  I  *  E  Q  Q  *  F  C  Y  L  H  V  *  C  V  K  L  S  G  K  S  H  *  L  K  K  I  I  S  H  S  Y  E  F  F  L  Y  R  F  N  R  D  *  E  *  I  *  *  S  Q  F  </second_frame>
            <third_frame>   G  F  S  M  L  H  T  V  T  *  G  E  R  E  Q  Q  H  *  T  L  S  Q  P  V  L  V  Q  P  R  Q  C  L  *  C  Y  L  S  S  R  G  S  *  M  A  L  L  S  E  C  Q  H  L  T  S  Q  S  L  T  L  L  S  T  S  R  R  K  E  L  Q  L  R  M  *  M  Q  H  S  E  R  L  L  M  V  H  *  K  A  Y  *  M  C  V  M  P  L  L  F  Q  L  T  S  D  A  L  T  F  H  P  P  S  T  P  P  *  P  W  S  W  E  M  I  W  S  R  S  L  L  G  M  T  T  S  G  D  T   : A  K  E  L  W  T  W  L  I  *  *  Q  A  N  G  Q  V  L  Q  H  Q  E  V  E  T  H  W  M  S  S  V  R  Q  I  L  L  M  R  N  A  K  S  M  N  K  T  F  L  L  *  F  E  N  N  S  S  F  V  I  Y  M  F  D  V  *  N  *  V  G  S  P  I  S  L  R  K  *  Y  H  T  R  M  N  S  F  Y  I  D  L  I  E  I  E  N  K  F  D  D  L  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47078" stop="46672"/>
                    <exon start="46596" stop="46464"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILDVCDAPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGVAAPGSGDPLDEFCETNPSDEECKVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46598" e_stop="46295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="46598" e_stop="46295" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46598" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46596" stop="46306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</gDNA_template>
            <first_frame> S  Q  R  V  V  D  L  A  H  L  V  A  S  K  W  P  G  V  A  A  P  G  S  G  D  P  L  D  E  F  C  E  T  N  P  S  D  E  E  C  K  V  Y  E  *  D  I  F  V  I  I  *  E  Q  Q  *  F  C  Y  L  H  V  *  C  V  K  L  S  G  K  S  H  *  L  K  K  I  I  S  H  S  Y  E  F  F  L  Y  R  F  N  R  D  *  E  *  I  *  *  S  Q  F  </first_frame>
            <second_frame>  A  K  E  L  W  T  W  L  I  *  *  Q  A  N  G  Q  V  L  Q  H  Q  E  V  E  T  H  W  M  S  S  V  R  Q  I  L  L  M  R  N  A  K  S  M  N  K  T  F  L  L  *  F  E  N  N  S  S  F  V  I  Y  M  F  D  V  *  N  *  V  G  S  P  I  S  L  R  K  *  Y  H  T  R  M  N  S  F  Y  I  D  L  I  E  I  E  N  K  F  D  D  L  N  S </second_frame>
            <third_frame>   P  K  S  C  G  L  G  S  S  S  S  K  Q  M  A  R  C  C  S  T  R  K  W  R  P  I  G  *  V  L  *  D  K  S  F  *  *  G  M  Q  S  L  *  I  R  H  F  C  Y  N  L  R  T  T  V  V  L  L  S  T  C  L  M  C  K  T  E  W  E  V  P  L  A  *  E  N  N  I  T  L  V  *  I  L  S  I  S  I  *  S  R  L  R  I  N  L  M  I  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="53261" PGL_stop="49579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53261" e_stop="53112"/>
            <exon e_start="51523" e_stop="51406"/>
            <exon e_start="51231" e_stop="51129"/>
            <exon e_start="50971" e_stop="50885"/>
            <exon e_start="50190" e_stop="49879"/>
            <exon e_start="49583" e_stop="49579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.922" e_score="0.987"/>
          <exon-intron don_prob="0.971" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="53261" e_stop="53112" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51523" e_stop="51406" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.931">
            <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51231" e_stop="51129" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.788">
            <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50971" e_stop="50885" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50190" e_stop="49879" e_length="312"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.850">
            <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295"/>
          </intron>
          <exon e_serial="6" e_score="0.600">
            <gDNA_exon_boundary e_start="49583" e_stop="49579" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53261" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53210" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53201" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="50065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53196" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53195" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="50031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53188" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53182" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53164" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53164" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="50125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53137" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53137" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51219" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAATATAAACGTACTATAACCCATTAATCACTTCTCTGTTGTAATCTTCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG : GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG : TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG : ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG : AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA : CAAAT</gDNA_template>
            <first_frame> G  K  I  *  T  Y  Y  N  P  L  I  T  S  L  L  *  S  S  P  Q  S  K  F  V  S  L  Q  K  *  L  L  F  Q  I  H  *  F  Y  P  N  P  E  A  L  L  S  I  S  P  Q  :  V  L  A  *  S  H  W  T  K  M  L  V  L  P  S  C  P  S  V  Q  V  T  E  E  N  H  I  L  L  K  D  H  *  S  F  K  R  H  T   : V  M  V  E  G  Q  A  E  A  V  L  A  S  L  L  V  A  L  F  W  E  E  *  L  L  A  L  L  D  V  C  L  H  L  R :   S  A  R  H  *  L  E  L  I  R  R  T  *  *  E  N  C  P  S  L  Y  M  T  K  T  K  H  *  R :   N  N  A  R  S  L  L  K  R  L  T  S  *  T  R  R  L  M  T  F  L  P  S  *  G  Q  M  T  H  Q  M  E  L  L  *  T  R  M  M  L  K  L  L  Y  K  K  H  F  Y  L  L  S  I  K  S  A  E  D  I  E  Y  M  G  I  F  L  V  Q  F  *  C  F  W  Y  S  L  Q  Y  D  I  P  K  *  G  N  I  M  *  F  Y  M  L  L  L  F  S  I  D  M  E  L  F  *  N :   K  </first_frame>
            <second_frame>  E  K  Y  K  R  T  I  T  H  *  S  L  L  C  C  N  L  L  H  N  P  N  L  F  H  C  K  N  D  C  S  F  K  F  I  D  F  I  Q  T  Q  K  P  F  S  P  F  L  L  R :   F  L  L  E  V  T  G  P  K  C  *  C  Y  Q  V  V  L  Q  S  K  S  R  R  K  I  I  F  F  *  K  I  I  D  H  S  S  V  I  Q  :  *  W  W  K  V  K  R  K  R  C  W  H  L  C  W  W  L  C  S  G  R  N  N  C  W  H  S  W  M  C  V  C  T  S   : D  Q  Q  G  I  S  W  S  *  *  E  G  P  D  E  K  I  A  Q  V  Y  I  *  R  R  Q  S  I  R   : E  T  T  Q  E  A  C  *  K  D  *  P  A  E  L  G  D  *  *  H  F  Y  P  V  E  V  R  *  H  T  K  W  S  C  C  E  L  G  *  C  *  S  C  C  I  R  N  I  S  I  F  L  V  S  S  Q  L  R  T  S  S  I  W  E  Y  S  *  F  S  F  D  V  F  G  I  R  Y  N  M  I  S  Q  N  E  E  T  L  C  D  F  I  C  C  F  C  F  L  L  T  W  N  S  F  K   : T  N </second_frame>
            <third_frame>   K  N  I  N  V  L  *  P  I  N  H  F  S  V  V  I  F  S  T  I  Q  I  C  F  T  A  K  M  T  A  L  S  N  S  L  I  L  S  K  P  R  S  P  S  L  H  F  S  S   : G  S  C  L  K  S  L  D  Q  N  V  S  A  T  K  L  S  F  S  P  S  H  G  G  K  S  Y  S  S  K  R  S  L  I  I  Q  A  S  Y  S :   D  G  G  R  S  S  G  S  G  A  G  I  F  V  G  G  F  V  L  G  G  I  I  V  G  T  L  G  C  V  F  A  P  Q  :  I  S  K  A  L  A  G  A  D  K  K  D  L  M  R  K  L  P  K  F  I  Y  D  E  D  K  A  L  E  :  K  Q  R  K  K  L  A  E  K  I  D  Q  L  N  S  A  I  D  D  I  S  T  Q  L  R  S  D  D  T  P  N  G  A  A  V  N  S  D  D  V  E  A  V  V  *  E  T  F  L  S  S  *  Y  Q  V  S  *  G  H  R  V  Y  G  N  I  P  S  S  V  L  M  F  L  V  F  A  T  I  *  Y  P  K  M  R  K  H  Y  V  I  L  Y  A  A  S  V  F  Y  *  H  G  T  L  L  K  :  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53238" stop="53112"/>
                    <exon start="51523" stop="51406"/>
                    <exon start="51231" stop="51129"/>
                    <exon start="50971" stop="50885"/>
                    <exon start="50190" stop="50056"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINHFSVVIFSTIQICFTAKMTALSNSLILSKPRSPSLHFSSGSCLKSLDQNVSATKLSFSPSHGGKSYSSKRSLIIQASYSDGGRSSGSGAGIFVGGFVLGGIIVGTLGCVFAPQISKALAGADKKDLMRKLPKFIYDEDKALEKQRKKLAEKIDQLNSAIDDISTQLRSDDTPNGAAVNSDDVEAVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53261" e_stop="53112"/>
            <exon e_start="51523" e_stop="51406"/>
            <exon e_start="51231" e_stop="51129"/>
            <exon e_start="50971" e_stop="50885"/>
            <exon e_start="50190" e_stop="49855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.922" e_score="0.987"/>
          <exon-intron don_prob="0.971" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="53261" e_stop="53112" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51523" e_stop="51406" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.931">
            <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51231" e_stop="51129" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.788">
            <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50971" e_stop="50885" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="50190" e_stop="49855" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53261" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53206" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53201" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="50065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53198" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53196" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53195" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="50031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53188" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53182" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53164" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53164" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="50125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53137" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51159" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAATATAAACGTACTATAACCCATTAATCACTTCTCTGTTGTAATCTTCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG : GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG : TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG : ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG : AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCT</gDNA_template>
            <first_frame> G  K  I  *  T  Y  Y  N  P  L  I  T  S  L  L  *  S  S  P  Q  S  K  F  V  S  L  Q  K  *  L  L  F  Q  I  H  *  F  Y  P  N  P  E  A  L  L  S  I  S  P  Q  :  V  L  A  *  S  H  W  T  K  M  L  V  L  P  S  C  P  S  V  Q  V  T  E  E  N  H  I  L  L  K  D  H  *  S  F  K  R  H  T   : V  M  V  E  G  Q  A  E  A  V  L  A  S  L  L  V  A  L  F  W  E  E  *  L  L  A  L  L  D  V  C  L  H  L  R :   S  A  R  H  *  L  E  L  I  R  R  T  *  *  E  N  C  P  S  L  Y  M  T  K  T  K  H  *  R :   N  N  A  R  S  L  L  K  R  L  T  S  *  T  R  R  L  M  T  F  L  P  S  *  G  Q  M  T  H  Q  M  E  L  L  *  T  R  M  M  L  K  L  L  Y  K  K  H  F  Y  L  L  S  I  K  S  A  E  D  I  E  Y  M  G  I  F  L  V  Q  F  *  C  F  W  Y  S  L  Q  Y  D  I  P  K  *  G  N  I  M  *  F  Y  M  L  L  L  F  S  I  D  M  E  L  F  *  N  S  S  L  S  Y  N  F   </first_frame>
            <second_frame>  E  K  Y  K  R  T  I  T  H  *  S  L  L  C  C  N  L  L  H  N  P  N  L  F  H  C  K  N  D  C  S  F  K  F  I  D  F  I  Q  T  Q  K  P  F  S  P  F  L  L  R :   F  L  L  E  V  T  G  P  K  C  *  C  Y  Q  V  V  L  Q  S  K  S  R  R  K  I  I  F  F  *  K  I  I  D  H  S  S  V  I  Q  :  *  W  W  K  V  K  R  K  R  C  W  H  L  C  W  W  L  C  S  G  R  N  N  C  W  H  S  W  M  C  V  C  T  S   : D  Q  Q  G  I  S  W  S  *  *  E  G  P  D  E  K  I  A  Q  V  Y  I  *  R  R  Q  S  I  R   : E  T  T  Q  E  A  C  *  K  D  *  P  A  E  L  G  D  *  *  H  F  Y  P  V  E  V  R  *  H  T  K  W  S  C  C  E  L  G  *  C  *  S  C  C  I  R  N  I  S  I  F  L  V  S  S  Q  L  R  T  S  S  I  W  E  Y  S  *  F  S  F  D  V  F  G  I  R  Y  N  M  I  S  Q  N  E  E  T  L  C  D  F  I  C  C  F  C  F  L  L  T  W  N  S  F  K  T  H  L  C  P  T  I  F  </second_frame>
            <third_frame>   K  N  I  N  V  L  *  P  I  N  H  F  S  V  V  I  F  S  T  I  Q  I  C  F  T  A  K  M  T  A  L  S  N  S  L  I  L  S  K  P  R  S  P  S  L  H  F  S  S   : G  S  C  L  K  S  L  D  Q  N  V  S  A  T  K  L  S  F  S  P  S  H  G  G  K  S  Y  S  S  K  R  S  L  I  I  Q  A  S  Y  S :   D  G  G  R  S  S  G  S  G  A  G  I  F  V  G  G  F  V  L  G  G  I  I  V  G  T  L  G  C  V  F  A  P  Q  :  I  S  K  A  L  A  G  A  D  K  K  D  L  M  R  K  L  P  K  F  I  Y  D  E  D  K  A  L  E  :  K  Q  R  K  K  L  A  E  K  I  D  Q  L  N  S  A  I  D  D  I  S  T  Q  L  R  S  D  D  T  P  N  G  A  A  V  N  S  D  D  V  E  A  V  V  *  E  T  F  L  S  S  *  Y  Q  V  S  *  G  H  R  V  Y  G  N  I  P  S  S  V  L  M  F  L  V  F  A  T  I  *  Y  P  K  M  R  K  H  Y  V  I  L  Y  A  A  S  V  F  Y  *  H  G  T  L  L  K  L  I  F  V  L  Q  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53238" stop="53112"/>
                    <exon start="51523" stop="51406"/>
                    <exon start="51231" stop="51129"/>
                    <exon start="50971" stop="50885"/>
                    <exon start="50190" stop="50056"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINHFSVVIFSTIQICFTAKMTALSNSLILSKPRSPSLHFSSGSCLKSLDQNVSATKLSFSPSHGGKSYSSKRSLIIQASYSDGGRSSGSGAGIFVGGFVLGGIIVGTLGCVFAPQISKALAGADKKDLMRKLPKFIYDEDKALEKQRKKLAEKIDQLNSAIDDISTQLRSDDTPNGAAVNSDDVEAVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51527" e_stop="51406"/>
            <exon e_start="51231" e_stop="51129"/>
            <exon e_start="50971" e_stop="50885"/>
            <exon e_start="50190" e_stop="49879"/>
            <exon e_start="49583" e_stop="49579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51527" e_stop="51406" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.931">
            <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51231" e_stop="51129" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.788">
            <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50971" e_stop="50885" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50190" e_stop="49879" e_length="312"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.850">
            <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="49583" e_stop="49579" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51527" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51219" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG : TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG : ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG : AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA : CAAAT</gDNA_template>
            <first_frame> L  G  S  C  L  K  S  L  D  Q  N  V  S  A  T  K  L  S  F  S  P  S  H  G  G  K  S  Y  S  S  K  R  S  L  I  I  Q  A  S  Y  S :   D  G  G  R  S  S  G  S  G  A  G  I  F  V  G  G  F  V  L  G  G  I  I  V  G  T  L  G  C  V  F  A  P  Q  :  I  S  K  A  L  A  G  A  D  K  K  D  L  M  R  K  L  P  K  F  I  Y  D  E  D  K  A  L  E  :  K  Q  R  K  K  L  A  E  K  I  D  Q  L  N  S  A  I  D  D  I  S  T  Q  L  R  S  D  D  T  P  N  G  A  A  V  N  S  D  D  V  E  A  V  V  *  E  T  F  L  S  S  *  Y  Q  V  S  *  G  H  R  V  Y  G  N  I  P  S  S  V  L  M  F  L  V  F  A  T  I  *  Y  P  K  M  R  K  H  Y  V  I  L  Y  A  A  S  V  F  Y  *  H  G  T  L  L  K  :  Q   </first_frame>
            <second_frame>  *  V  L  A  *  S  H  W  T  K  M  L  V  L  P  S  C  P  S  V  Q  V  T  E  E  N  H  I  L  L  K  D  H  *  S  F  K  R  H  T   : V  M  V  E  G  Q  A  E  A  V  L  A  S  L  L  V  A  L  F  W  E  E  *  L  L  A  L  L  D  V  C  L  H  L  R :   S  A  R  H  *  L  E  L  I  R  R  T  *  *  E  N  C  P  S  L  Y  M  T  K  T  K  H  *  R :   N  N  A  R  S  L  L  K  R  L  T  S  *  T  R  R  L  M  T  F  L  P  S  *  G  Q  M  T  H  Q  M  E  L  L  *  T  R  M  M  L  K  L  L  Y  K  K  H  F  Y  L  L  S  I  K  S  A  E  D  I  E  Y  M  G  I  F  L  V  Q  F  *  C  F  W  Y  S  L  Q  Y  D  I  P  K  *  G  N  I  M  *  F  Y  M  L  L  L  F  S  I  D  M  E  L  F  *  N :   K  </second_frame>
            <third_frame>   R  F  L  L  E  V  T  G  P  K  C  *  C  Y  Q  V  V  L  Q  S  K  S  R  R  K  I  I  F  F  *  K  I  I  D  H  S  S  V  I  Q  :  *  W  W  K  V  K  R  K  R  C  W  H  L  C  W  W  L  C  S  G  R  N  N  C  W  H  S  W  M  C  V  C  T  S   : D  Q  Q  G  I  S  W  S  *  *  E  G  P  D  E  K  I  A  Q  V  Y  I  *  R  R  Q  S  I  R   : E  T  T  Q  E  A  C  *  K  D  *  P  A  E  L  G  D  *  *  H  F  Y  P  V  E  V  R  *  H  T  K  W  S  C  C  E  L  G  *  C  *  S  C  C  I  R  N  I  S  I  F  L  V  S  S  Q  L  R  T  S  S  I  W  E  Y  S  *  F  S  F  D  V  F  G  I  R  Y  N  M  I  S  Q  N  E  E  T  L  C  D  F  I  C  C  F  C  F  L  L  T  W  N  S  F  K   : T  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51527" stop="51406"/>
                    <exon start="51231" stop="51129"/>
                    <exon start="50971" stop="50885"/>
                    <exon start="50190" stop="50056"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSCLKSLDQNVSATKLSFSPSHGGKSYSSKRSLIIQASYSDGGRSSGSGAGIFVGGFVLGGIIVGTLGCVFAPQISKALAGADKKDLMRKLPKFIYDEDKALEKQRKKLAEKIDQLNSAIDDISTQLRSDDTPNGAAVNSDDVEAVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52809" e_stop="52178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="52809" e_stop="52178" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATT</gDNA_template>
            <first_frame> F  T  D  L  I  Y  L  S  F  *  Y  *  S  L  E  L  L  R  L  L  V  L  D  I  V  R  V  L  H  W  L  V  S  G  Q  S  S  P  P  E  L  A  F  G  V  E  F  A  *  G  V  I  S  L  H  G  I  S  V  R  S  M  P  L  *  V  L  N  H  A  S  V  R  M  G  V  R  G  V  R  T  P  D  V  C  *  *  H  V  C  A  S  S  K  P  V  L  T  L  *  H  E  L  V  K  C  L  S  V  R  I  Q  R  P  V  L  L  K  L  *  A  L  A  S  E  Q  *  A  V  W  W  L  Q  L  P  Y  P  F  V  L  L  *  V  *  *  G  D  A  *  L  L  I  L  S  P  S  S  H  I  H  A  *  N  R  R  F  L  Q  L  G  Y  I  L  L  G  D  N  V  I  P  P  F  F  I  C  H  T  F  L  I  Q  F  C  I  F  C  S  S  D  N  C  C  C  L  *  L  L  L  L  L   </first_frame>
            <second_frame>  S  L  I  *  Y  I  L  A  S  N  T  S  L  L  S  S  L  D  C  W  F  W  I  L  L  E  F  Y  I  G  W  *  V  G  S  P  P  L  P  S  *  L  L  G  L  N  L  P  K  V  L  Y  L  Y  T  V  L  V  S  G  P  C  P  F  E  F  S  T  M  L  Q  L  G  W  V  *  G  V  L  E  H  Q  M  F  A  S  N  M  C  V  L  V  V  S  Q  S  *  H  C  S  M  N  L  S  N  V  Y  L  L  G  S  S  D  P  C  Y  *  S  Y  E  L  *  H  P  N  N  E  P  F  G  G  Y  N  Y  H  I  H  L  Y  F  Y  K  F  D  R  E  M  P  N  F  L  Y  F  P  L  V  H  I  F  M  H  E  I  G  V  F  C  N  W  V  I  F  C  L  V  I  T  *  F  P  L  F  L  F  V  T  H  F  L  F  N  F  V  Y  F  V  Q  V  I  I  V  V  V  C  D  Y  Y  Y  Y  Y  </second_frame>
            <third_frame>   H  *  F  N  I  S  *  L  L  I  L  V  S  *  A  P  *  T  V  G  F  G  Y  C  *  S  S  T  L  V  G  E  W  A  V  L  P  S  R  A  S  F  W  G  *  I  C  L  R  C  Y  I  F  T  R  Y  *  C  Q  V  H  A  P  L  S  S  Q  P  C  F  S  *  D  G  C  E  G  C  *  N  T  R  C  L  L  V  T  C  V  C  *  *  *  A  S  L  N  I  V  A  *  T  C  Q  M  F  I  C  *  D  P  A  T  R  V  T  K  V  M  S  S  S  I  R  T  M  S  R  L  V  V  T  T  T  I  S  I  C  T  S  I  S  L  I  G  R  C  L  T  S  Y  T  F  P  *  F  T  Y  S  C  M  K  *  A  F  S  A  I  G  L  Y  S  A  W  *  *  R  D  S  P  F  F  Y  L  S  H  I  S  Y  S  I  L  Y  I  L  F  K  *  *  L  L  L  F  V  I  I  I  I  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="57148" PGL_stop="59345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57148" e_stop="57453"/>
            <exon e_start="58562" e_stop="58675"/>
            <exon e_start="58776" e_stop="58896"/>
            <exon e_start="59322" e_stop="59345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.043" acc_prob="0.985" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="57148" e_stop="57453" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="57454" i_stop="58561" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="58562" e_stop="58675" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.043" acc_prob="0.985">
            <gDNA_intron_boundary i_start="58676" i_stop="58775" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58776" e_stop="58896" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58897" i_stop="59321" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59322" e_stop="59345" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57148" stop="57453"/>
              <exon start="58562" stop="58675"/>
              <exon start="58776" stop="58896"/>
              <exon start="59322" stop="59345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCAATTTCCCCAAACCCTAGAACTGAAAAATCTAAGTAAATGGGTCGTCTTGTTTCTTGATTTTAATATCTGGGTCGTTTTTTTAGTTCTCGTTTTGCGTATCAGAATCTTCAAACAAGTTCATTTGCTGCAGAAAAAAGGAGCAATTTTTAATATTTTTATCTTCAATATTAGTAGTTCATTCACATTGGTGGAAGTTGGTTTGTTGGCATTTGTTTTTTATGGTTTGAGTTGAAACGGGTCGGACTCGGTTCTCTATGGCTCGGCGTCATGGGTGGCAACTACCGGCTCACTCGTTTCAG : GTTGTGGCTATAACAGTTTTCTGCCTGCTATCTGTTGCCTTCTATGCATTTTTTGCTCCATTTCTAGGAAAAGACATCTTTGAGTACATAGCAATTGGTGTTTATTCCTTCCTG : GCTCTATGTGTGTTCATACTCTATGTTAGATGCACAGCAATTGATCCTGCTGATCCTGGGATTCTCATTGAAGCTGACAAGTCAACGGCCTATCAATCACACAACGAAATAGAGTTGCCTG : GTGATATATCTGCTGCAGGGGGTC</gDNA_template>
            <first_frame> L  F  N  F  P  K  P  *  N  *  K  I  *  V  N  G  S  S  C  F  L  I  L  I  S  G  S  F  F  *  F  S  F  C  V  S  E  S  S  N  K  F  I  C  C  R  K  K  E  Q  F  L  I  F  L  S  S  I  L  V  V  H  S  H  W  W  K  L  V  C  W  H  L  F  F  M  V  *  V  E  T  G  R  T  R  F  S  M  A  R  R  H  G  W  Q  L  P  A  H  S  F  Q  :  V  V  A  I  T  V  F  C  L  L  S  V  A  F  Y  A  F  F  A  P  F  L  G  K  D  I  F  E  Y  I  A  I  G  V  Y  S  F  L  :  A  L  C  V  F  I  L  Y  V  R  C  T  A  I  D  P  A  D  P  G  I  L  I  E  A  D  K  S  T  A  Y  Q  S  H  N  E  I  E  L  P   : G  D  I  S  A  A  G  G  </first_frame>
            <second_frame>  F  S  I  S  P  N  P  R  T  E  K  S  K  *  M  G  R  L  V  S  *  F  *  Y  L  G  R  F  F  S  S  R  F  A  Y  Q  N  L  Q  T  S  S  F  A  A  E  K  R  S  N  F  *  Y  F  Y  L  Q  Y  *  *  F  I  H  I  G  G  S  W  F  V  G  I  C  F  L  W  F  E  L  K  R  V  G  L  G  S  L  W  L  G  V  M  G  G  N  Y  R  L  T  R  F  R :   L  W  L  *  Q  F  S  A  C  Y  L  L  P  S  M  H  F  L  L  H  F  *  E  K  T  S  L  S  T  *  Q  L  V  F  I  P  S  W :   L  Y  V  C  S  Y  S  M  L  D  A  Q  Q  L  I  L  L  I  L  G  F  S  L  K  L  T  S  Q  R  P  I  N  H  T  T  K  *  S  C  L  :  V  I  Y  L  L  Q  G  V </second_frame>
            <third_frame>   F  Q  F  P  Q  T  L  E  L  K  N  L  S  K  W  V  V  L  F  L  D  F  N  I  W  V  V  F  L  V  L  V  L  R  I  R  I  F  K  Q  V  H  L  L  Q  K  K  G  A  I  F  N  I  F  I  F  N  I  S  S  S  F  T  L  V  E  V  G  L  L  A  F  V  F  Y  G  L  S  *  N  G  S  D  S  V  L  Y  G  S  A  S  W  V  A  T  T  G  S  L  V  S   : G  C  G  Y  N  S  F  L  P  A  I  C  C  L  L  C  I  F  C  S  I  S  R  K  R  H  L  *  V  H  S  N  W  C  L  F  L  P   : G  S  M  C  V  H  T  L  C  *  M  H  S  N  *  S  C  *  S  W  D  S  H  *  S  *  Q  V  N  G  L  S  I  T  Q  R  N  R  V  A  W :   *  Y  I  C  C  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57382" stop="57453"/>
                    <exon start="58562" stop="58675"/>
                    <exon start="58776" stop="58896"/>
                    <exon start="59322" stop="59344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETGRTRFSMARRHGWQLPAHSFQVVAITVFCLLSVAFYAFFAPFLGKDIFEYIAIGVYSFLALCVFILYVRCTAIDPADPGILIEADKSTAYQSHNEIELPGDISAAGG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57150" stop="57386"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQFPQTLELKNLSKWVVLFLDFNIWVVFLVLVLRIRIFKQVHLLQKKGAIFNIFIFNISSSFTLVEVGLLAFVFYGLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="61618" PGL_stop="63067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61618" e_stop="61744"/>
            <exon e_start="61848" e_stop="62026"/>
            <exon e_start="62567" e_stop="63067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61618" e_stop="61744" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61745" i_stop="61847" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61848" e_stop="62026" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62027" i_stop="62566" i_length="540"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62567" e_stop="63067" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61618" stop="61744"/>
              <exon start="61848" stop="62026"/>
              <exon start="62567" stop="63067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTCTCTTAGGGTTTAATATTCTTTTTTTCTTCTCTGTTTCAGGCCTTATGTACTGCTGTTTCACTCCTTGCAACTGTGCCTTTAGGTGAATTGTTCTTCTTTCACATTATTCTCATTCGTAAG : GGTATTACAACATATGAGTATGTTGTTGCAATGAGATCTCAAAGTGAGCCGCCTGGACCCTCTGTAGATGGAGGTGATCAGCAGAGTTTGCCATCATCGCCGACCAGCTCTGCGGTGACTGCCATCAGTGGAAGAAGTTCTGTTGGGATGAGCTTGCAACATAAAGGTGCTTGGTGTAC : TCCTTCCAAGAGCTCATATCCGCCCAGTCGTGCCAGCAGAGAAGACATTGAAACATGTGGCCACAGCATGAGTAACTTGAGCAGTCCTCTTGCCCCTAACCGAACTCCATCTCCATTAGCACTGCAGCATCACCCTTCAAATAGAGACCACTTTAACCCAATATATCAGTCATCTGCAAATCAATCTCCGTGGTCAGCAAAAGCATGCCATGAGAACGAATCTCTGCCCCCTGACAATCTCTCAGAGGTATCCACTAGGAAGAGTAATATGGGCACTCCAGAGAGTACAAGGTCATCAGTTTTCTGGGATCAAGAAGCCGGGCGATTTGTTACTGCTAATGCTAACAGGGGTGCTGGTTCTACTTCACAAGTTTCTGGAACAGAGCTTACATACACTGGTCAATCTATATTTTTTGGAGGGCCTTTACTGAACGAGAACATGAACAGAGGGGCAAGAAGTAGCGGTACACCGTTTGCTGGTGGTCCACAGCGGAGTTACTA</gDNA_template>
            <first_frame> L  V  L  L  G  F  N  I  L  F  F  F  S  V  S  G  L  M  Y  C  C  F  T  P  C  N  C  A  F  R  *  I  V  L  L  S  H  Y  S  H  S  *   : G  Y  Y  N  I  *  V  C  C  C  N  E  I  S  K  *  A  A  W  T  L  C  R  W  R  *  S  A  E  F  A  I  I  A  D  Q  L  C  G  D  C  H  Q  W  K  K  F  C  W  D  E  L  A  T  *  R  C  L  V  Y  :  S  F  Q  E  L  I  S  A  Q  S  C  Q  Q  R  R  H  *  N  M  W  P  Q  H  E  *  L  E  Q  S  S  C  P  *  P  N  S  I  S  I  S  T  A  A  S  P  F  K  *  R  P  L  *  P  N  I  S  V  I  C  K  S  I  S  V  V  S  K  S  M  P  *  E  R  I  S  A  P  *  Q  S  L  R  G  I  H  *  E  E  *  Y  G  H  S  R  E  Y  K  V  I  S  F  L  G  S  R  S  R  A  I  C  Y  C  *  C  *  Q  G  C  W  F  Y  F  T  S  F  W  N  R  A  Y  I  H  W  S  I  Y  I  F  W  R  A  F  T  E  R  E  H  E  Q  R  G  K  K  *  R  Y  T  V  C  W  W  S  T  A  E  L  L </first_frame>
            <second_frame>  L  F  S  *  G  L  I  F  F  F  S  S  L  F  Q  A  L  C  T  A  V  S  L  L  A  T  V  P  L  G  E  L  F  F  F  H  I  I  L  I  R  K  :  G  I  T  T  Y  E  Y  V  V  A  M  R  S  Q  S  E  P  P  G  P  S  V  D  G  G  D  Q  Q  S  L  P  S  S  P  T  S  S  A  V  T  A  I  S  G  R  S  S  V  G  M  S  L  Q  H  K  G  A  W  C  T :   P  S  K  S  S  Y  P  P  S  R  A  S  R  E  D  I  E  T  C  G  H  S  M  S  N  L  S  S  P  L  A  P  N  R  T  P  S  P  L  A  L  Q  H  H  P  S  N  R  D  H  F  N  P  I  Y  Q  S  S  A  N  Q  S  P  W  S  A  K  A  C  H  E  N  E  S  L  P  P  D  N  L  S  E  V  S  T  R  K  S  N  M  G  T  P  E  S  T  R  S  S  V  F  W  D  Q  E  A  G  R  F  V  T  A  N  A  N  R  G  A  G  S  T  S  Q  V  S  G  T  E  L  T  Y  T  G  Q  S  I  F  F  G  G  P  L  L  N  E  N  M  N  R  G  A  R  S  S  G  T  P  F  A  G  G  P  Q  R  S  Y   </second_frame>
            <third_frame>   C  S  L  R  V  *  Y  S  F  F  L  L  C  F  R  P  Y  V  L  L  F  H  S  L  Q  L  C  L  *  V  N  C  S  S  F  T  L  F  S  F  V  R :   V  L  Q  H  M  S  M  L  L  Q  *  D  L  K  V  S  R  L  D  P  L  *  M  E  V  I  S  R  V  C  H  H  R  R  P  A  L  R  *  L  P  S  V  E  E  V  L  L  G  *  A  C  N  I  K  V  L  G  V   : L  L  P  R  A  H  I  R  P  V  V  P  A  E  K  T  L  K  H  V  A  T  A  *  V  T  *  A  V  L  L  P  L  T  E  L  H  L  H  *  H  C  S  I  T  L  Q  I  E  T  T  L  T  Q  Y  I  S  H  L  Q  I  N  L  R  G  Q  Q  K  H  A  M  R  T  N  L  C  P  L  T  I  S  Q  R  Y  P  L  G  R  V  I  W  A  L  Q  R  V  Q  G  H  Q  F  S  G  I  K  K  P  G  D  L  L  L  L  M  L  T  G  V  L  V  L  L  H  K  F  L  E  Q  S  L  H  T  L  V  N  L  Y  F  L  E  G  L  Y  *  T  R  T  *  T  E  G  Q  E  V  A  V  H  R  L  L  V  V  H  S  G  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61631" stop="61744"/>
                    <exon start="61848" stop="62026"/>
                    <exon start="62567" stop="63065"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLIFFFSSLFQALCTAVSLLATVPLGELFFFHIILIRKGITTYEYVVAMRSQSEPPGPSVDGGDQQSLPSSPTSSAVTAISGRSSVGMSLQHKGAWCTPSKSSYPPSRASREDIETCGHSMSNLSSPLAPNRTPSPLALQHHPSNRDHFNPIYQSSANQSPWSAKACHENESLPPDNLSEVSTRKSNMGTPESTRSSVFWDQEAGRFVTANANRGAGSTSQVSGTELTYTGQSIFFGGPLLNENMNRGARSSGTPFAGGPQRSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="65073" PGL_stop="66707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65073" e_stop="65170"/>
            <exon e_start="65299" e_stop="65448"/>
            <exon e_start="65602" e_stop="65661"/>
            <exon e_start="66281" e_stop="66658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.676" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65073" e_stop="65170" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="65171" i_stop="65298" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65299" e_stop="65448" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.676">
            <gDNA_intron_boundary i_start="65449" i_stop="65601" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65602" e_stop="65661" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65662" i_stop="66280" i_length="619"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="66281" e_stop="66658" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65170"/>
              <exon start="65299" stop="65448"/>
              <exon start="65602" stop="65661"/>
              <exon start="66281" stop="66658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTCCTGTAGGTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAG : CCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAG : AGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCG : CCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGA</gDNA_template>
            <first_frame> D  S  C  R  Y  I  L  T  V  Y  I  V  I  L  L  R  F  Q  V  E  N  L  N  C  W  L  V  I  G  S  F  H  S :   L  T  S  S  R  L  E  L  L  Q  G  K  S  G  N  V  I  L  W  T  I  Q  M  V  Y  F  L  L  K  Q  H  Q  N  L  Q  R  Q  C  I  Q  *  L  K  G  *  K  L  E  E  R :   G  L  *  S  F  L  Q  K  L  D  M  V  Q  G  E  *  M  K  F  R :   Q  G  L  H  S  T  *  I  L  N  Y  W  K  *  S  H  Q  N  G  S  N  R  C  T  R  T  V  P  Y  V  L  P  S  L  F  F  I  V  V  K  V  V  F  T  H  K  H  Q  Q  L  W  N  Q  Q  Q  F  P  L  T  L  H  V  I  *  T  T  T  Y  W  I  K  E  T  V  P  H  Q  Q  C  H  L  L  S  *  F  F  F  P  S  C  *  L  F  S  L  C  Y  V  D  E  V  I  C  F  Q  F  F  P  R  F  F  M  C  M  *  T  F  T  S  *  L  P  M  L  L   </first_frame>
            <second_frame>  T  P  V  G  T  F  *  L  C  I  S  *  Y  Y  C  G  F  K  S  R  I  *  T  V  G  W  *  S  D  H  F  T   : A  L  R  V  P  G  W  S  S  S  R  E  R  A  E  T  *  F  C  G  Q  S  K  W  F  I  F  C  S  S  S  T  K  T  S  K  G  N  V  Y  N  N  *  R  D  E  S  W  R  K   : E  D  C  D  R  S  S  R  S  W  I  W  F  K  G  N  E  *  N  S   : A  R  G  Y  I  Q  P  E  Y  *  T  I  G  S  K  V  I  R  T  E  A  I  G  V  P  G  L  C  H  M  F  C  L  P  S  S  S  L  L  *  K  L  C  S  L  I  N  T  N  S  Y  G  I  N  N  S  S  R  S  P  F  T  *  F  E  P  R  L  I  G  *  K  R  R  C  L  I  N  S  A  I  S  S  H  D  F  S  S  L  H  V  N  C  S  V  F  V  M  *  M  K  *  F  A  S  N  F  F  H  A  S  S  C  V  C  K  L  L  L  L  N  F  P  C  Y  *  </second_frame>
            <third_frame>   L  L  *  V  H  F  D  C  V  Y  R  N  I  T  A  V  S  S  R  E  S  K  L  L  A  G  N  R  I  I  S  Q  :  P  Y  E  F  Q  V  G  A  P  P  G  K  E  R  K  R  D  F  V  D  N  P  N  G  L  F  S  A  Q  A  A  P  K  P  P  K  A  M  Y  T  I  T  E  G  M  K  V  G  G  K  :  R  T  V  I  V  P  P  E  A  G  Y  G  S  R  G  M  N  E  I  P  :  P  G  A  T  F  N  L  N  I  E  L  L  E  V  K  S  S  E  R  K  Q  *  V  Y  P  D  C  A  I  C  F  A  F  P  L  L  H  C  C  K  S  C  V  H  S  *  T  P  T  A  M  E  S  T  T  V  P  A  H  P  S  R  D  L  N  H  D  L  L  D  K  R  D  G  A  S  S  T  V  P  S  P  L  M  I  F  L  P  F  M  L  T  V  Q  S  L  L  C  R  *  S  N  L  L  P  I  F  S  T  L  L  H  V  Y  V  N  F  Y  F  L  T  S  H  V  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65084" stop="65170"/>
                    <exon start="65299" stop="65448"/>
                    <exon start="65602" stop="65661"/>
                    <exon start="66281" stop="66346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHFDCVYRNITAVSSRESKLLAGNRIISQPYEFQVGAPPGKERKRDFVDNPNGLFSAQAAPKPPKAMYTITEGMKVGGKRTVIVPPEAGYGSRGMNEIPPGATFNLNIELLEVKSSERKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65084" e_stop="65170"/>
            <exon e_start="65296" e_stop="65448"/>
            <exon e_start="65602" e_stop="65661"/>
            <exon e_start="66281" e_stop="66707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.811" e_score="0.977"/>
          <exon-intron don_prob="0.972" acc_prob="0.676" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="65084" e_stop="65170" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.811">
            <gDNA_intron_boundary i_start="65171" i_stop="65295" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65296" e_stop="65448" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.676">
            <gDNA_intron_boundary i_start="65449" i_stop="65601" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65602" e_stop="65661" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65662" i_stop="66280" i_length="619"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="66281" e_stop="66707" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65084" stop="65170"/>
              <exon start="65296" stop="65448"/>
              <exon start="65602" stop="65661"/>
              <exon start="66281" stop="66707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAG : TAGCCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAG : AGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCG : CCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGATACATATATATATATTAGAGAGACATCACACTATCTTGACAATGAGAAA</gDNA_template>
            <first_frame> V  H  F  D  C  V  Y  R  N  I  T  A  V  S  S  R  E  S  K  L  L  A  G  N  R  I  I  S  Q  :  *  P  Y  E  F  Q  V  G  A  P  P  G  K  E  R  K  R  D  F  V  D  N  P  N  G  L  F  S  A  Q  A  A  P  K  P  P  K  A  M  Y  T  I  T  E  G  M  K  V  G  G  K  :  R  T  V  I  V  P  P  E  A  G  Y  G  S  R  G  M  N  E  I  P  :  P  G  A  T  F  N  L  N  I  E  L  L  E  V  K  S  S  E  R  K  Q  *  V  Y  P  D  C  A  I  C  F  A  F  P  L  L  H  C  C  K  S  C  V  H  S  *  T  P  T  A  M  E  S  T  T  V  P  A  H  P  S  R  D  L  N  H  D  L  L  D  K  R  D  G  A  S  S  T  V  P  S  P  L  M  I  F  L  P  F  M  L  T  V  Q  S  L  L  C  R  *  S  N  L  L  P  I  F  S  T  L  L  H  V  Y  V  N  F  Y  F  L  T  S  H  V  T  R  Y  I  Y  I  Y  *  R  D  I  T  L  S  *  Q  *  E  </first_frame>
            <second_frame>  Y  I  L  T  V  Y  I  V  I  L  L  R  F  Q  V  E  N  L  N  C  W  L  V  I  G  S  F  H  S :   S  L  T  S  S  R  L  E  L  L  Q  G  K  S  G  N  V  I  L  W  T  I  Q  M  V  Y  F  L  L  K  Q  H  Q  N  L  Q  R  Q  C  I  Q  *  L  K  G  *  K  L  E  E  R :   G  L  *  S  F  L  Q  K  L  D  M  V  Q  G  E  *  M  K  F  R :   Q  G  L  H  S  T  *  I  L  N  Y  W  K  *  S  H  Q  N  G  S  N  R  C  T  R  T  V  P  Y  V  L  P  S  L  F  F  I  V  V  K  V  V  F  T  H  K  H  Q  Q  L  W  N  Q  Q  Q  F  P  L  T  L  H  V  I  *  T  T  T  Y  W  I  K  E  T  V  P  H  Q  Q  C  H  L  L  S  *  F  F  F  P  S  C  *  L  F  S  L  C  Y  V  D  E  V  I  C  F  Q  F  F  P  R  F  F  M  C  M  *  T  F  T  S  *  L  P  M  L  L  D  T  Y  I  Y  I  R  E  T  S  H  Y  L  D  N  E  K </second_frame>
            <third_frame>   T  F  *  L  C  I  S  *  Y  Y  C  G  F  K  S  R  I  *  T  V  G  W  *  S  D  H  F  T   : V  A  L  R  V  P  G  W  S  S  S  R  E  R  A  E  T  *  F  C  G  Q  S  K  W  F  I  F  C  S  S  S  T  K  T  S  K  G  N  V  Y  N  N  *  R  D  E  S  W  R  K   : E  D  C  D  R  S  S  R  S  W  I  W  F  K  G  N  E  *  N  S   : A  R  G  Y  I  Q  P  E  Y  *  T  I  G  S  K  V  I  R  T  E  A  I  G  V  P  G  L  C  H  M  F  C  L  P  S  S  S  L  L  *  K  L  C  S  L  I  N  T  N  S  Y  G  I  N  N  S  S  R  S  P  F  T  *  F  E  P  R  L  I  G  *  K  R  R  C  L  I  N  S  A  I  S  S  H  D  F  S  S  L  H  V  N  C  S  V  F  V  M  *  M  K  *  F  A  S  N  F  F  H  A  S  S  C  V  C  K  L  L  L  L  N  F  P  C  Y  *  I  H  I  Y  I  L  E  R  H  H  T  I  L  T  M  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65299" stop="65448"/>
                    <exon start="65602" stop="65661"/>
                    <exon start="66281" stop="66346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYEFQVGAPPGKERKRDFVDNPNGLFSAQAAPKPPKAMYTITEGMKVGGKRTVIVPPEAGYGSRGMNEIPPGATFNLNIELLEVKSSERKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65085" stop="65170"/>
                    <exon start="65296" stop="65422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YILTVYIVILLRFQVENLNCWLVIGSFHSSLTSSRLELLQGKSGNVILWTIQMVYFLLKQHQNLQRQCIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="67146" PGL_stop="72638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68348" e_stop="68989"/>
            <exon e_start="69075" e_stop="69222"/>
            <exon e_start="69294" e_stop="69470"/>
            <exon e_start="69688" e_stop="69756"/>
            <exon e_start="69853" e_stop="69942"/>
            <exon e_start="71541" e_stop="71699"/>
            <exon e_start="71780" e_stop="72004"/>
            <exon e_start="72199" e_stop="72638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.444" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68348" e_stop="68989" e_length="642"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.444">
            <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69075" e_stop="69222" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.843" acc_prob="0.840">
            <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69294" e_stop="69470" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.690">
            <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69688" e_stop="69756" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.706" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69757" i_stop="69852" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69853" e_stop="69942" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.934" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69943" i_stop="71540" i_length="1598"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71541" e_stop="71699" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71780" e_stop="72004" e_length="225"/>
          </exon>
          <intron i_serial="7" don_prob="0.842" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="72199" e_stop="72638" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68348" stop="68989"/>
              <exon start="69075" stop="69198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68580" stop="68989"/>
              <exon start="69075" stop="69222"/>
              <exon start="69294" stop="69470"/>
              <exon start="69688" stop="69756"/>
              <exon start="69853" stop="69942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68690" stop="68989"/>
              <exon start="69075" stop="69222"/>
              <exon start="69294" stop="69470"/>
              <exon start="69688" stop="69697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68690" stop="68989"/>
              <exon start="69075" stop="69222"/>
              <exon start="69294" stop="69424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68690" stop="68989"/>
              <exon start="69075" stop="69222"/>
              <exon start="69294" stop="69365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68989"/>
              <exon start="69075" stop="69222"/>
              <exon start="69294" stop="69427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68921" stop="68989"/>
              <exon start="69075" stop="69222"/>
              <exon start="69294" stop="69470"/>
              <exon start="69688" stop="69756"/>
              <exon start="69853" stop="69942"/>
              <exon start="71541" stop="71603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69096" stop="69222"/>
              <exon start="69294" stop="69470"/>
              <exon start="69688" stop="69695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69302" stop="69470"/>
              <exon start="69688" stop="69756"/>
              <exon start="69853" stop="69942"/>
              <exon start="71541" stop="71699"/>
              <exon start="71780" stop="72001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69701" stop="69756"/>
              <exon start="69853" stop="69942"/>
              <exon start="71541" stop="71699"/>
              <exon start="71780" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69878" stop="69942"/>
              <exon start="71541" stop="71699"/>
              <exon start="71780" stop="72000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71637" stop="71699"/>
              <exon start="71780" stop="72004"/>
              <exon start="72199" stop="72638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71693" stop="71699"/>
              <exon start="71780" stop="72004"/>
              <exon start="72199" stop="72631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71693" stop="71699"/>
              <exon start="71780" stop="72004"/>
              <exon start="72199" stop="72532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71830" stop="72004"/>
              <exon start="72199" stop="72631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71868" stop="72004"/>
              <exon start="72199" stop="72631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262777" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCAGATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGTGGCAACAACCAGTGAAGGGAAAGGGAAAACTAAAACTTCTTCCAATAGCCTACCTATCAAACTTGTTAACCCTGAAGGCATGCCACCATCATTGACTTGGTATTCTGTCTCCCTACCGAAGGAGCTGGCAAAGGGGCAGAGCCTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG : GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG : ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAG : GTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGAC : ACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG : GTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAG : GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG : GTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAACGTAATTG</gDNA_template>
            <first_frame> C  S  D  R  K  Y  W  *  *  S  N  F  R  G  S  V  T  I  W  R  S  P  G  K  R  F  S  I  F  S  G  N  N  Q  *  R  E  R  E  N  *  N  F  F  Q  *  P  T  Y  Q  T  C  *  P  *  R  H  A  T  I  I  D  L  V  F  C  L  P  T  E  G  A  G  K  G  A  E  P  K  F  G  S  Q  D  C  I  Y  A  C  T  T  A  I  S  *  E  N  Y  S  S  *  Y  P  A  P  C  V  S  G  E  C  L  L  Y  F  S  L  C  S  *  C  P  I  S  Q  C  Q  I  T  R  T  K  S  R  I  I  H  *  V  R  E  H  Q  I  F  W  F  R  N  *  I  W  T  L  *  E  S  S  S  F  L  I  L  A  Y  S  S  T  L  R  E  Q  *  A  I  R  S  C  P  G  V  S  A  R  D  *  S  L  S  L  G  K  C  S  D  H  R  A  L  *  P  C  Q  C  W  C  Q  K  Q  W  G  V  F  K  :  A  R  V  P  G  P  T  T  S  Q  R  C  I  V  I  R  T  S  C  C  Q  I  A  S  K  S  P  F  H  L  L  Q  R  *  N  W  Q  Y  I  N  I  Q  F  M  G  *  F  I  K   : D  I  V  T  N  *  T  *  V  S  D  V  W  W  L  E  N  F  F  Y  H  R  L  W  A  A  P  *  G  L  F  V  P  C  R  G  E  T  F  L  K  Y  I  F  W  L  P  N  *  G  G  G  C  *  K  P  C  C  E   : G  C  T  A  R  R  F  K  G  Y  F  C  L  G  P  F  S  C  Q  R  V  K  R   : H  E  I  F  Q  F  G  Y  D  W  *  T  S  G  C  S  *  K  D  Q  C  C  A  *  A  *  P  I  F  P   : G  L  L  Q  V  Q  Q  S  V  T  A  *  R  T  N  D  V  N  F  W  I  F  L  L  I  P  C  M  Y  H  I  Y  A  C  G  P  N  N  L  K  V  L  S  F  L  S  C  K  T  A  V  G  *   : G  A  D  C  S  S  A  D  P  E  H  N  E  P  L  F  G  H  S  *  *  T  *  S  I  I  T  R  S  V  K  D  W  *  C  A  S  M  Q  S  C  S  *  I  S  *  *  Y  V  E  G  A  F  E  G  F  K  A  F  S  L  L  F  A  V  F  S  A  V  C  F  I  I  F  *   : G  *  G  C  C  C  K  G  E  R  A  A  G  E  A  D  S  E  T  H  H  S  Y  R  *  L  *  K  E  V  W  W  S  R  Y  *  E  P  Y  C  T  N  P  A  K  N  *  S  F  E  T  G  N  *  *  S  S  G  N  N  *  *  D  I  I  S  V  Q  T  T  L  I  Q  Y  K  W  L  K  Y  C  C  E  V  N  N  R  I  R  I  N  S  R  Y  *  L  M  Q  L  Y  V  V  E  N  L  N  N  F  V  V  V  E  F  *  V  L  A  E  S  L  W  L  T  I  K  *  V  L  *  T  T  V  F  S  Y  I  L  S  C  *  V  Y  G  F  L  T  *  L </first_frame>
            <second_frame>  V  Q  I  E  N  T  G  N  D  P  I  S  E  V  L  L  P  F  G  D  H  Q  A  K  D  L  A  F  L  V  A  T  T  S  E  G  K  G  K  T  K  T  S  S  N  S  L  P  I  K  L  V  N  P  E  G  M  P  P  S  L  T  W  Y  S  V  S  L  P  K  E  L  A  K  G  Q  S  L  N  L  E  V  R  T  A  F  T  H  A  L  Q  P  F  P  E  K  I  T  Q  A  D  I  Q  L  L  V  F  Q  E  S  A  Y  Y  I  S  P  Y  A  V  N  V  Q  S  L  S  V  K  L  P  E  P  K  V  E  S  Y  T  K  L  E  N  T  K  F  S  G  S  E  I  K  Y  G  P  Y  E  N  L  P  P  F  S  F  S  H  I  A  V  H  F  V  S  N  K  P  F  A  V  A  Q  E  L  V  R  E  I  E  V  S  H  W  G  N  V  Q  I  T  E  H  Y  N  L  V  N  A  G  A  R  S  S  G  E  F  S  R :   L  E  Y  Q  A  R  P  H  L  R  G  A  S  S  F  G  H  L  V  A  K  L  P  P  R  A  H  S  I  Y  Y  R  D  E  I  G  N  I  S  T  S  N  L  W  G  D  S  S  K  :  T  L  L  Q  I  E  P  R  Y  P  M  F  G  G  W  K  T  S  F  T  I  G  Y  G  L  P  L  R  D  Y  L  F  R  A  E  G  K  R  F  L  N  I  S  F  G  C  P  I  E  E  V  V  V  E  N  L  V  V  K  :  V  V  L  P  E  G  S  K  D  I  S  V  S  V  P  F  P  V  K  E  S  R  D  :  T  K  F  S  N  L  D  M  I  G  R  P  V  V  V  L  E  K  T  N  A  V  H  E  H  N  Q  Y  F  Q  :  V  Y  Y  R  F  S  N  L  S  L  L  R  E  P  M  M  L  I  S  G  F  F  F  L  F  L  A  C  I  I  Y  M  H  A  D  L  T  I  S  K  S  S  P  S  Y  L  A  K  L  Q  W  D  E  :  V  Q  T  A  L  Q  Q  I  Q  S  I  M  N  H  C  L  G  I  H  D  K  L  E  A  S  L  R  D  L  S  R  T  G  D  V  Q  A  C  K  A  A  R  K  S  A  D  N  M  L  K  E  L  L  K  D  L  K  P  L  V  S  F  L  Q  S  S  P  L  S  A  S  L  Y  S  K  :  V  E  D  V  V  A  K  E  K  E  L  Q  E  K  L  I  V  K  H  T  T  V  T  D  S  Y  E  K  K  S  G  G  R  D  I  E  N  R  I  A  P  I  Q  Q  R  I  R  A  L  R  Q  E  I  D  D  L  L  E  I  I  D  E  I  *  F  Q  C  R  Q  H  *  S  N  I  N  G  *  N  I  V  V  R  *  T  T  E  L  G  S  I  R  D  I  S  *  C  S  C  M  L  L  R  T  *  I  T  L  *  L  *  N  S  R  F  L  P  N  L  F  G  *  Q  S  N  E  C  C  R  Q  L  F  F  H  I  Y  *  V  V  K  F  M  V  F  *  R  N   </second_frame>
            <third_frame>   F  R  *  K  I  L  V  M  I  Q  F  Q  R  F  C  Y  H  L  E  I  T  R  Q  K  I  *  H  F  *  W  Q  Q  P  V  K  G  K  G  K  L  K  L  L  P  I  A  Y  L  S  N  L  L  T  L  K  A  C  H  H  H  *  L  G  I  L  S  P  Y  R  R  S  W  Q  R  G  R  A  *  I  W  K  S  G  L  H  L  R  M  H  Y  S  H  F  L  R  K  L  L  K  L  I  S  S  S  L  C  F  R  R  V  P  T  I  F  L  L  M  Q  L  M  S  N  L  S  V  S  N  Y  P  N  Q  K  S  N  H  T  L  S  *  R  T  P  N  F  L  V  Q  K  L  N  M  D  L  M  R  I  F  L  L  S  H  S  R  I  *  Q  Y  T  S  *  A  I  S  H  S  Q  L  P  R  S  *  C  E  R  L  K  S  L  I  G  E  M  F  R  S  Q  S  I  I  T  L  S  M  L  V  P  E  A  V  G  S  F  Q   : G  *  S  T  R  P  D  H  I  S  E  V  H  R  H  S  D  I  L  L  P  N  C  L  Q  E  P  I  P  F  I  T  E  M  K  L  A  I  Y  Q  H  P  I  Y  G  V  I  H  Q  R :   H  C  Y  K  L  N  L  G  I  R  C  L  V  A  G  K  L  L  L  P  S  A  M  G  C  P  L  G  T  I  C  S  V  Q  R  G  N  V  S  *  I  Y  L  L  V  A  Q  L  R  R  W  L  L  K  T  L  L  *  R :   L  Y  C  Q  K  V  Q  R  I  F  L  S  R  S  L  F  L  S  K  S  Q  E  T :   R  N  F  P  I  W  I  *  L  V  D  Q  W  L  F  L  K  R  P  M  L  C  M  S  I  T  N  I  S  R :   S  I  T  G  S  A  I  C  H  C  L  E  N  Q  *  C  *  F  L  D  F  S  S  Y  S  L  H  V  S  Y  I  C  M  R  T  *  Q  S  Q  S  P  L  L  L  I  L  Q  N  C  S  G  M  R :   C  R  L  L  F  S  R  S  R  A  *  *  T  I  V  W  A  F  M  I  N  L  K  H  H  Y  E  I  C  Q  G  L  V  M  C  K  H  A  K  L  L  V  N  Q  L  I  I  C  *  R  S  F  *  R  I  *  S  L  *  S  P  F  C  S  L  L  R  C  L  L  H  Y  I  L  R :   L  R  M  L  L  Q  R  R  K  S  C  R  R  S  *  *  *  N  T  P  Q  L  Q  I  V  M  K  R  S  L  V  V  E  I  L  R  T  V  L  H  Q  S  S  K  E  L  E  L  *  D  R  K  L  M  I  F  W  K  *  L  M  R  Y  N  F  S  A  D  N  I  D  P  I  *  M  A  K  I  L  L  *  G  E  Q  Q  N  *  D  Q  F  E  I  L  V  D  A  A  V  C  C  *  E  P  E  *  L  C  S  C  R  I  L  G  S  C  R  I  S  L  V  D  N  Q  M  S  A  V  D  N  C  F  F  I  Y  I  E  L  L  S  L  W  F  S  N  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68349" stop="68989"/>
                    <exon start="69075" stop="69222"/>
                    <exon start="69294" stop="69470"/>
                    <exon start="69688" stop="69756"/>
                    <exon start="69853" stop="69942"/>
                    <exon start="71541" stop="71699"/>
                    <exon start="71780" stop="72004"/>
                    <exon start="72199" stop="72390"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1698</number_coding_nucleotides>
                  <number_encoded_amino_acids>566</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQIENTGNDPISEVLLPFGDHQAKDLAFLVATTSEGKGKTKTSSNSLPIKLVNPEGMPPSLTWYSVSLPKELAKGQSLNLEVRTAFTHALQPFPEKITQADIQLLVFQESAYYISPYAVNVQSLSVKLPEPKVESYTKLENTKFSGSEIKYGPYENLPPFSFSHIAVHFVSNKPFAVAQELVREIEVSHWGNVQITEHYNLVNAGARSSGEFSRLEYQARPHLRGASSFGHLVAKLPPRAHSIYYRDEIGNISTSNLWGDSSKTLLQIEPRYPMFGGWKTSFTIGYGLPLRDYLFRAEGKRFLNISFGCPIEEVVVENLVVKVVLPEGSKDISVSVPFPVKESRDTKFSNLDMIGRPVVVLEKTNAVHEHNQYFQVYYRFSNLSLLREPMMLISGFFFLFLACIIYMHADLTISKSSPSYLAKLQWDEVQTALQQIQSIMNHCLGIHDKLEASLRDLSRTGDVQACKAARKSADNMLKELLKDLKPLVSFLQSSPLSASLYSKVEDVVAKEKELQEKLIVKHTTVTDSYEKKSGGRDIENRIAPIQQRIRALRQEIDDLLEIIDEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67146" e_stop="67357"/>
            <exon e_start="68116" e_stop="68160"/>
            <exon e_start="68355" e_stop="68437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="67146" e_stop="67357" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67358" i_stop="68115" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68116" e_stop="68160" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68161" i_stop="68354" i_length="194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68355" e_stop="68437" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67146" stop="67357"/>
              <exon start="68116" stop="68160"/>
              <exon start="68355" stop="68437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGTAGACAGTAGCGTTCAACTCCGACGATGGTCTTTTTCTCTGTTTGATATTTTTCCGATCTGATAGCCGGAGTAGTATAACGCATAAAGCTAAAAGGAAGAATCAGAAAATGACGATTCGTCTTTATTTGTTGTTTTCGTTTTTCGTTTTACTTGCTCAATGGTCGCCTGCACTTTCCGATCTAGTCATCTCCAAAGTTGATCGAAAG : ATTGACCTGACCTCTCAAGTAGTGCGTGTGACTGCAAATCTGAAG : ATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGT</gDNA_template>
            <first_frame> V  S  R  Q  *  R  S  T  P  T  M  V  F  F  S  V  *  Y  F  S  D  L  I  A  G  V  V  *  R  I  K  L  K  G  R  I  R  K  *  R  F  V  F  I  C  C  F  R  F  S  F  Y  L  L  N  G  R  L  H  F  P  I  *  S  S  P  K  L  I  E  R :   L  T  *  P  L  K  *  C  V  *  L  Q  I  *  R :   *  K  I  L  V  M  I  Q  F  Q  R  F  C  Y  H  L  E  I  T  R  Q  K  I  *  H  F  *  </first_frame>
            <second_frame>  S  V  D  S  S  V  Q  L  R  R  W  S  F  S  L  F  D  I  F  P  I  *  *  P  E  *  Y  N  A  *  S  *  K  E  E  S  E  N  D  D  S  S  L  F  V  V  F  V  F  R  F  T  C  S  M  V  A  C  T  F  R  S  S  H  L  Q  S  *  S  K   : D  *  P  D  L  S  S  S  A  C  D  C  K  S  E   : D  R  K  Y  W  *  *  S  N  F  R  G  S  V  T  I  W  R  S  P  G  K  R  F  S  I  F  S </second_frame>
            <third_frame>   Q  *  T  V  A  F  N  S  D  D  G  L  F  L  C  L  I  F  F  R  S  D  S  R  S  S  I  T  H  K  A  K  R  K  N  Q  K  M  T  I  R  L  Y  L  L  F  S  F  F  V  L  L  A  Q  W  S  P  A  L  S  D  L  V  I  S  K  V  D  R  K  :  I  D  L  T  S  Q  V  V  R  V  T  A  N  L  K  :  I  E  N  T  G  N  D  P  I  S  E  V  L  L  P  F  G  D  H  Q  A  K  D  L  A  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67154" stop="67357"/>
                    <exon start="68116" stop="68160"/>
                    <exon start="68355" stop="68435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVAFNSDDGLFLCLIFFRSDSRSSITHKAKRKNQKMTIRLYLLFSFFVLLAQWSPALSDLVISKVDRKIDLTSQVVRVTANLKIENTGNDPISEVLLPFGDHQAKDLAFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="73213" PGL_stop="78361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73213" e_stop="73436"/>
            <exon e_start="74789" e_stop="74863"/>
            <exon e_start="76459" e_stop="76611"/>
            <exon e_start="77242" e_stop="77340"/>
            <exon e_start="77966" e_stop="78361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73213" e_stop="73436" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74789" e_stop="74863" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.954">
            <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76459" e_stop="76611" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.720">
            <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77242" e_stop="77340" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.941">
            <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="77966" e_stop="78361" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73213" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73213" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73213" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73213" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73222" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73242" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73281" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73291" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73304" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73318" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73341" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73386" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73389" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74791" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74833" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76486" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76528" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG : GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT : CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG : AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG : GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCATGTATGCTTGTCTGCATTGCCTCATCTACTGTGAAGTTAAAGCTAATACATATGATTCGGGAGCTGTGTTTCT</gDNA_template>
            <first_frame> F  G  C  L  *  S  L  V  I  H  S  Q  L  K  Q  L  F  H  S  Y  I  S  R  V  *  P  V  G  G  W  G  I  L  L  Q  *  R  T  P  A  F  N  R  K  W  R  A  H  F  V  M  L  E  I  P  R  V  W  *  F  M  P  R  R  N  F  L  L  T  L  S  P  I  C  R :   V  M  Q  N  *  T  P  K  L  E  H  Q  L  I  S  V  L  *  *  G  N  T  F  L  I :   N  M  L  V  L  L  W  E  C  N  I  I  G  G  K  S  S  G  I  L  F  V  V  K  K  N  F  Q  *  R  Q  I  I  R  L  T  F  I  L  R  A  S  T  M  W  T  K  N  F  W  R :   K  S  R  E  L  L  L  N  L  L  G  I  S  W  M  *  K  K  T  K  M  *  G  S  K  L  D  T  K  S  L  K  R :   S  L  T  F  S  L  V  K  T  T  G  L  S  L  S  T  I  L  G  N  G  K  *  D  M  I  C  D  I  T  D  G  R  I  N  C  S  V  R  V  V  I  I  A  R  K  K  K  T  I  I  L  H  L  C  F  Y  Y  V  F  *  H  S  I  I  A  K  R  H  I  T  L  C  K  I  W  F  *  V  L  L  T  E  I  V  P  L  Q  Y  K  I  E  T  H  E  N  Y  L  S  F  V  *  E  I  L  L  P  M  Y  A  C  L  H  C  L  I  Y  C  E  V  K  A  N  T  Y  D  S  G  A  V  F   </first_frame>
            <second_frame>  L  G  V  Y  R  V  W  L  S  I  P  S  *  S  N  S  S  I  H  I  Y  L  G  F  N  Q  L  G  V  G  G  F  F  Y  S  E  E  H  L  H  L  T  E  N  G  E  L  T  S  L  C  W  R  F  Q  E  S  G  D  S  C  Q  G  E  I  S  S  *  H  F  H  P  F  A   : G  S  C  R  T  R  H  Q  N  W  S  T  N  L  S  L  C  Y  D  K  A  I  L  S  *   : S  I  C  *  S  C  C  G  S  A  I  L  *  A  A  K  A  L  V  Y  C  S  W  *  K  R  I  S  S  D  G  K  *  F  G  *  L  S  Y  *  G  Q  V  R  C  G  R  K  T  F  G   : E  K  V  E  S  C  C  *  I  Y  L  G  Y  H  G  C  E  K  R  P  R  C  E  A  Q  S  W  I  R  S  H  *  K   : G  P  L  L  S  V  *  *  K  Q  L  D  S  H  C  Q  Q  Y  W  E  M  E  S  K  I  *  F  V  I  L  L  M  D  A  *  I  V  Q  L  E  W  L  *  L  L  E  R  R  K  P  S  S  F  I  C  V  S  I  T  Y  F  D  I  L  S  L  Q  K  G  T  L  P  C  V  R  S  G  F  E  Y  C  *  Q  R  *  C  H  C  N  T  K  L  K  L  M  K  I  T  F  H  L  C  K  K  F  C  S  P  C  M  L  V  C  I  A  S  S  T  V  K  L  K  L  I  H  M  I  R  E  L  C  F  </second_frame>
            <third_frame>   W  V  F  I  E  S  G  Y  P  F  P  A  E  A  T  L  P  F  I  Y  I  *  G  L  T  S  W  G  L  G  D  S  S  T  V  K  N  T  C  I  *  Q  K  M  E  S  S  L  R  Y  A  G  D  S  K  S  L  V  I  H  A  K  E  K  F  P  L  N  T  F  T  H  L  Q  :  G  H  A  E  L  D  T  K  I  G  A  P  T  Y  L  C  A  M  I  R  Q  Y  F  P  D  :  Q  Y  A  S  L  A  V  G  V  Q  Y  Y  R  R  Q  K  L  W  Y  T  V  R  G  K  K  E  F  P  V  T  A  N  N  S  V  N  F  H  I  K  G  K  Y  D  V  D  E  K  L  L  E  :  K  K  S  R  V  A  A  E  F  T  W  D  I  M  D  V  K  K  D  Q  D  V  R  L  K  V  G  Y  E  V  I  E  K  :  V  P  Y  F  Q  F  S  E  N  N  W  T  L  T  V  N  N  I  G  K  W  K  V  R  Y  D  L  *  Y  Y  *  W  T  H  K  L  F  S  *  S  G  Y  N  C  *  K  E  E  N  H  H  P  S  S  V  F  L  L  R  I  L  T  F  Y  H  C  K  K  A  H  Y  L  V  *  D  L  V  L  S  I  V  N  R  D  S  A  I  A  I  Q  N  *  N  S  *  K  L  P  F  I  C  V  R  N  F  A  P  H  V  C  L  S  A  L  P  H  L  L  *  S  *  S  *  Y  I  *  F  G  S  C  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73338" stop="73436"/>
                    <exon start="74789" stop="74863"/>
                    <exon start="76459" stop="76611"/>
                    <exon start="77242" stop="77340"/>
                    <exon start="77966" stop="78049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMESSLRYAGDSKSLVIHAKEKFPLNTFTHLQGHAELDTKIGAPTYLCAMIRQYFPDQYASLAVGVQYYRRQKLWYTVRGKKEFPVTANNSVNFHIKGKYDVDEKLLEKKSRVAAEFTWDIMDVKKDQDVRLKVGYEVIEKVPYFQFSENNWTLTVNNIGKWKVRYDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74773" e_stop="74863"/>
            <exon e_start="76459" e_stop="76611"/>
            <exon e_start="77242" e_stop="77340"/>
            <exon e_start="77966" e_stop="78318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74773" e_stop="74863" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.954">
            <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76459" e_stop="76611" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.720">
            <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77242" e_stop="77340" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.941">
            <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="77966" e_stop="78318" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74773" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74791" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74833" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76486" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76528" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT : CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG : AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG : GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCATGTATGCTTGTCTGCATTGCCTCATCTACT</gDNA_template>
            <first_frame> F  Y  S  L  A  G  S  C  R  T  R  H  Q  N  W  S  T  N  L  S  L  C  Y  D  K  A  I  L  S  *   : S  I  C  *  S  C  C  G  S  A  I  L  *  A  A  K  A  L  V  Y  C  S  W  *  K  R  I  S  S  D  G  K  *  F  G  *  L  S  Y  *  G  Q  V  R  C  G  R  K  T  F  G   : E  K  V  E  S  C  C  *  I  Y  L  G  Y  H  G  C  E  K  R  P  R  C  E  A  Q  S  W  I  R  S  H  *  K   : G  P  L  L  S  V  *  *  K  Q  L  D  S  H  C  Q  Q  Y  W  E  M  E  S  K  I  *  F  V  I  L  L  M  D  A  *  I  V  Q  L  E  W  L  *  L  L  E  R  R  K  P  S  S  F  I  C  V  S  I  T  Y  F  D  I  L  S  L  Q  K  G  T  L  P  C  V  R  S  G  F  E  Y  C  *  Q  R  *  C  H  C  N  T  K  L  K  L  M  K  I  T  F  H  L  C  K  K  F  C  S  P  C  M  L  V  C  I  A  S  S  T </first_frame>
            <second_frame>  S  I  H  W  Q  G  H  A  E  L  D  T  K  I  G  A  P  T  Y  L  C  A  M  I  R  Q  Y  F  P  D  :  Q  Y  A  S  L  A  V  G  V  Q  Y  Y  R  R  Q  K  L  W  Y  T  V  R  G  K  K  E  F  P  V  T  A  N  N  S  V  N  F  H  I  K  G  K  Y  D  V  D  E  K  L  L  E  :  K  K  S  R  V  A  A  E  F  T  W  D  I  M  D  V  K  K  D  Q  D  V  R  L  K  V  G  Y  E  V  I  E  K  :  V  P  Y  F  Q  F  S  E  N  N  W  T  L  T  V  N  N  I  G  K  W  K  V  R  Y  D  L  *  Y  Y  *  W  T  H  K  L  F  S  *  S  G  Y  N  C  *  K  E  E  N  H  H  P  S  S  V  F  L  L  R  I  L  T  F  Y  H  C  K  K  A  H  Y  L  V  *  D  L  V  L  S  I  V  N  R  D  S  A  I  A  I  Q  N  *  N  S  *  K  L  P  F  I  C  V  R  N  F  A  P  H  V  C  L  S  A  L  P  H  L   </second_frame>
            <third_frame>   L  F  I  G  R  V  M  Q  N  *  T  P  K  L  E  H  Q  L  I  S  V  L  *  *  G  N  T  F  L  I :   N  M  L  V  L  L  W  E  C  N  I  I  G  G  K  S  S  G  I  L  F  V  V  K  K  N  F  Q  *  R  Q  I  I  R  L  T  F  I  L  R  A  S  T  M  W  T  K  N  F  W  R :   K  S  R  E  L  L  L  N  L  L  G  I  S  W  M  *  K  K  T  K  M  *  G  S  K  L  D  T  K  S  L  K  R :   S  L  T  F  S  L  V  K  T  T  G  L  S  L  S  T  I  L  G  N  G  K  *  D  M  I  C  D  I  T  D  G  R  I  N  C  S  V  R  V  V  I  I  A  R  K  K  K  T  I  I  L  H  L  C  F  Y  Y  V  F  *  H  S  I  I  A  K  R  H  I  T  L  C  K  I  W  F  *  V  L  L  T  E  I  V  P  L  Q  Y  K  I  E  T  H  E  N  Y  L  S  F  V  *  E  I  L  L  P  M  Y  A  C  L  H  C  L  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74774" stop="74863"/>
                    <exon start="76459" stop="76611"/>
                    <exon start="77242" stop="77340"/>
                    <exon start="77966" stop="78049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIHWQGHAELDTKIGAPTYLCAMIRQYFPDQYASLAVGVQYYRRQKLWYTVRGKKEFPVTANNSVNFHIKGKYDVDEKLLEKKSRVAAEFTWDIMDVKKDQDVRLKVGYEVIEKVPYFQFSENNWTLTVNNIGKWKVRYDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73214" e_stop="73436"/>
            <exon e_start="74789" e_stop="74863"/>
            <exon e_start="76459" e_stop="76611"/>
            <exon e_start="77242" e_stop="77547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.720" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73214" e_stop="73436" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74789" e_stop="74863" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.954">
            <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76459" e_stop="76611" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.720">
            <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="77242" e_stop="77547" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73269" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73269" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73291" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73386" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG : GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT : CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG : AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATT</gDNA_template>
            <first_frame> L  G  V  Y  R  V  W  L  S  I  P  S  *  S  N  S  S  I  H  I  Y  L  G  F  N  Q  L  G  V  G  G  F  F  Y  S  E  E  H  L  H  L  T  E  N  G  E  L  T  S  L  C  W  R  F  Q  E  S  G  D  S  C  Q  G  E  I  S  S  *  H  F  H  P  F  A   : G  S  C  R  T  R  H  Q  N  W  S  T  N  L  S  L  C  Y  D  K  A  I  L  S  *   : S  I  C  *  S  C  C  G  S  A  I  L  *  A  A  K  A  L  V  Y  C  S  W  *  K  R  I  S  S  D  G  K  *  F  G  *  L  S  Y  *  G  Q  V  R  C  G  R  K  T  F  G   : E  K  V  E  S  C  C  *  I  Y  L  G  Y  H  G  C  E  K  R  P  R  C  E  A  Q  S  W  I  R  S  H  *  K  G  K  S  F  C  *  S  S  S  S  V  L  R  L  P  S  S  H  Q  S  I  S  V  E  T  N  V  E  I  W  F  V  K  M  V  T  *  A  S  L  A  L  I  I  N  A  W  H  C  L  V  P  L  N  L  I  N  E  Y  S  I  Y  Y  S  V  L  I  L  H  </first_frame>
            <second_frame>  W  V  F  I  E  S  G  Y  P  F  P  A  E  A  T  L  P  F  I  Y  I  *  G  L  T  S  W  G  L  G  D  S  S  T  V  K  N  T  C  I  *  Q  K  M  E  S  S  L  R  Y  A  G  D  S  K  S  L  V  I  H  A  K  E  K  F  P  L  N  T  F  T  H  L  Q  :  G  H  A  E  L  D  T  K  I  G  A  P  T  Y  L  C  A  M  I  R  Q  Y  F  P  D  :  Q  Y  A  S  L  A  V  G  V  Q  Y  Y  R  R  Q  K  L  W  Y  T  V  R  G  K  K  E  F  P  V  T  A  N  N  S  V  N  F  H  I  K  G  K  Y  D  V  D  E  K  L  L  E  :  K  K  S  R  V  A  A  E  F  T  W  D  I  M  D  V  K  K  D  Q  D  V  R  L  K  V  G  Y  E  V  I  E  K  V  N  H  F  A  N  L  Q  V  V  Y  S  V  S  H  L  P  T  N  Q  L  V  L  K  Q  M  *  R  Y  G  L  *  K  W  S  L  E  L  L  *  L  S  S  *  M  H  G  I  V  L  Y  L  *  I  S  *  M  N  I  V  Y  T  I  V  F  *  Y  Y  I </second_frame>
            <third_frame>   G  C  L  *  S  L  V  I  H  S  Q  L  K  Q  L  F  H  S  Y  I  S  R  V  *  P  V  G  G  W  G  I  L  L  Q  *  R  T  P  A  F  N  R  K  W  R  A  H  F  V  M  L  E  I  P  R  V  W  *  F  M  P  R  R  N  F  L  L  T  L  S  P  I  C  R :   V  M  Q  N  *  T  P  K  L  E  H  Q  L  I  S  V  L  *  *  G  N  T  F  L  I :   N  M  L  V  L  L  W  E  C  N  I  I  G  G  K  S  S  G  I  L  F  V  V  K  K  N  F  Q  *  R  Q  I  I  R  L  T  F  I  L  R  A  S  T  M  W  T  K  N  F  W  R :   K  S  R  E  L  L  L  N  L  L  G  I  S  W  M  *  K  K  T  K  M  *  G  S  K  L  D  T  K  S  L  K  R  *  I  I  L  L  I  F  K  *  C  T  P  S  P  I  F  P  P  I  N  *  C  *  N  K  C  R  D  M  V  C  E  N  G  H  L  S  F  S  S  S  H  H  K  C  M  A  L  S  C  T  F  E  S  H  K  *  I  *  Y  I  L  *  C  F  D  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73338" stop="73436"/>
                    <exon start="74789" stop="74863"/>
                    <exon start="76459" stop="76611"/>
                    <exon start="77242" stop="77421"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMESSLRYAGDSKSLVIHAKEKFPLNTFTHLQGHAELDTKIGAPTYLCAMIRQYFPDQYASLAVGVQYYRRQKLWYTVRGKKEFPVTANNSVNFHIKGKYDVDEKLLEKKSRVAAEFTWDIMDVKKDQDVRLKVGYEVIEKVNHFANLQVVYSVSHLPTNQLVLKQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="87661" PGL_stop="83845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87661" e_stop="87572"/>
            <exon e_start="86867" e_stop="85927"/>
            <exon e_start="85336" e_stop="85149"/>
            <exon e_start="84464" e_stop="83845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.998" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.796" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="87661" e_stop="87572" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87571" i_stop="86868" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="86867" e_stop="85927" e_length="941"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.796">
            <gDNA_intron_boundary i_start="85926" i_stop="85337" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="85336" e_stop="85149" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85148" i_stop="84465" i_length="684"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84464" e_stop="83845" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87661" stop="87572"/>
              <exon start="86867" stop="86116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86749" stop="85935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86748" stop="86255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86465" stop="85927"/>
              <exon start="85336" stop="85160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85283" stop="85149"/>
              <exon start="84464" stop="83878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85188" stop="85149"/>
              <exon start="84464" stop="83845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAATCTCCTCGATGGCTAGTCAGTAAAGGAAGAATGGTCGAGGCAAAACAAGTTTTGCAGAAATTGCGTGGCATAGAGGATGTTTCAG : GGGAGATGGCATTGCTTGTTGAGGGTTTGGCTGTTGGCATTGAACCATCAATAGAAGAGTATATCATTGGTCCAGCTGATGAGCTTACTGAGGATCAGGACCTGGCTACTGACAAAGATCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCAGTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTTGGAATTGGAATTCAAATATTGCAACAG : TTCTCTGGTATAAATGGAGTCATGTACTACACTCCTCAAATCCTTGAGCAGGCAGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAG : GTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTTTTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTAGGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTCAATAGTTATTACTGCTATATTTGTCCACCATTTTGAGATGTCCAAATTA</gDNA_template>
            <first_frame> L  N  L  L  D  G  *  S  V  K  E  E  W  S  R  Q  N  K  F  C  R  N  C  V  A  *  R  M  F  Q  :  G  R  W  H  C  L  L  R  V  W  L  L  A  L  N  H  Q  *  K  S  I  S  L  V  Q  L  M  S  L  L  R  I  R  T  W  L  L  T  K  I  I  S  S  C  T  A  Q  R  K  A  S  R  G  W  P  S  Q  L  L  D  R  V  V  *  L  L  C  P  G  K  G  A  W  C  S  R  V  C  L  L  W  I  L  L  *  L  Y  L  V  V  S  M  R  S  S  L  I  Q  E  V  *  G  A  C  Y  S  P  I  S  E  A  *  S  A  P  W  I  L  M  S  K  M  I  T  G  M  R  R  V  C  R  E  K  V  M  I  I  L  R  M  A  V  Q  I  L  M  T  I  Y  K  V  H  *  Y  H  V  K  Q  P  L  W  K  P  *  S  L  I  P  M  A  A  L  *  A  *  G  G  I  A  A  *  C  K  A  M  L  E  R  V  *  A  A  W  A  L  V  V  V  G  S  W  H  G  N  G  L  K  G  K  V  K  M  E  L  K  K  E  A  S  K  G  Y  I  C  I  R  R  R  A  L  A  L  D  V  G  L  S  F  Q  F  L  V  A  I  F  M  K  M  V  N  S  Y  K  L  R  L  W  *  V  S  L  Q  F  T  L  R  N  L  W  I  S  I  L  W  D  Q  Q  W  S  I  H  L  K  L  L  Q  K  V  R  V  G  L  L  F  L  N  Q  E  S  S  E  R  S  *  L  E  L  E  F  K  Y  C  N  S :   S  L  V  *  M  E  S  C  T  T  L  L  K  S  L  S  R  Q  V  *  E  F  F  F  L  T  L  A  S  H  Q  T  Q  H  P  S  S  S  V  R  *  Q  T  S  *  C  S  L  L  *  Q  L  Q  C  G  S  W  M  W  L  A  E   : G  R  C  C  C  T  L  F  L  F  S  Y  Y  H  S  S  V  L  S  L  V  T  L  S  T  W  G  V  *  L  M  Q  S  F  L  L  F  A  *  F  S  T  F  V  S  L  *  R  A  M  D  P  S  Q  I  S  S  A  Q  K  F  F  Q  L  G  F  V  V  C  A  S  P  S  V  L  S  S  S  G  Y  V  M  S  L  *  L  T  H  C  L  *  C  S  T  R  L  V  Y  L  A  C  L  V  F  M  P  L  S  V  S  F  L  G  F  S  S  S  *  G  F  P  K  P  K  A  C  P  *  K  S  L  Q  S  S  L  L  L  V  Q  D  K  L  L  L  S  Q  S  M  S  S  *  F  *  G  I  F  C  P  I  Y  Y  K  Y  V  V  K  F  V  E  N  K  K  M  L  S  S  L  G  V  L  H  F  T  S  I  W  Y  W  H  F  S  I  V  I  T  A  I  F  V  H  H  F  E  M  S  K  L </first_frame>
            <second_frame>  *  I  S  S  M  A  S  Q  *  R  K  N  G  R  G  K  T  S  F  A  E  I  A  W  H  R  G  C  F  R :   G  D  G  I  A  C  *  G  F  G  C  W  H  *  T  I  N  R  R  V  Y  H  W  S  S  *  *  A  Y  *  G  S  G  P  G  Y  *  Q  R  S  Y  Q  V  V  R  P  R  G  R  P  L  V  G  G  Q  A  S  Y  W  T  E  *  S  S  S  C  V  Q  A  R  E  H  G  A  A  E  C  A  S  Y  G  S  S  C  D  S  I  W  *  C  P  *  E  A  P  *  Y  R  K  Y  E  E  H  A  I  P  Q  F  R  K  H  D  Q  H  H  G  S  S  C  Q  R  *  S  L  G  *  G  E  S  A  E  R  R  *  *  L  S  F  G  W  R  C  R  F  *  *  Q  S  T  K  S  I  D  I  T  S  N  N  R  C  G  N  R  S  P  S  S  P  W  Q  H  Y  E  R  E  A  A  *  Q  P  N  A  R  Q  C  W  R  G  C  R  Q  H  G  H  W  W  W  L  A  V  G  M  E  M  V  *  K  G  R  *  R  W  N  *  R  R  R  L  Q  K  D  I  F  A  S  G  G  G  P  *  L  S  T  W  V  S  R  F  S  S  W  W  R  Y  S  *  R  W  *  I  H  T  S  C  G  F  G  K  S  A  C  S  L  L  *  G  T  Y  G  S  A  S  C  G  T  S  N  G  P  S  I  *  N  C  F  K  R  S  E  L  G  C  S  S  *  T  R  S  Q  A  S  A  H  S  W  N  W  N  S  N  I  A  T   : V  L  W  Y  K  W  S  H  V  L  H  S  S  N  P  *  A  G  R  C  R  S  S  S  F  *  L  W  H  R  I  R  L  S  I  L  P  H  Q  C  V  N  K  L  P  D  A  P  F  C  S  N  C  N  A  V  H  G  C  G  W  Q  K  :  V  A  A  A  V  H  Y  S  C  S  H  T  I  T  H  L  S  C  H  W  *  H  C  Q  P  G  E  C  S  S  C  S  R  F  Y  Y  L  R  D  S  L  L  L  F  L  C  D  G  L  W  T  H  P  K  Y  P  L  L  R  N  F  S  N  *  G  S  W  F  V  H  R  H  L  C  S  R  L  L  D  M  *  C  H  C  D  L  H  T  A  C  D  A  Q  L  D  W  F  I  W  R  V  W  Y  L  C  H  C  L  C  H  F  L  D  F  R  L  L  K  G  S  R  N  Q  R  H  A  L  R  S  H  Y  R  V  L  C  C  W  C  K  T  S  C  C  Y  R  K  A  *  V  V  S  F  K  V  S  S  V  R  F  T  T  S  M  *  *  N  L  *  K  I  K  K  C  Y  P  L  *  V  S  S  I  L  H  P  S  G  T  G  I  S  Q  *  L  L  L  L  Y  L  S  T  I  L  R  C  P  N   </second_frame>
            <third_frame>   E  S  P  R  W  L  V  S  K  G  R  M  V  E  A  K  Q  V  L  Q  K  L  R  G  I  E  D  V  S   : G  E  M  A  L  L  V  E  G  L  A  V  G  I  E  P  S  I  E  E  Y  I  I  G  P  A  D  E  L  T  E  D  Q  D  L  A  T  D  K  D  H  I  K  L  Y  G  P  E  E  G  L  S  W  V  A  K  P  V  T  G  Q  S  S  L  A  L  V  S  R  Q  G  S  M  V  Q  Q  S  V  P  L  M  D  P  L  V  T  L  F  G  S  V  H  E  K  L  P  D  T  G  S  M  R  S  M  L  F  P  N  F  G  S  M  I  S  T  M  D  P  H  V  K  D  D  H  W  D  E  E  S  L  Q  R  E  G  D  D  Y  P  S  D  G  G  A  D  S  D  D  N  L  Q  S  P  L  I  S  R  Q  T  T  A  V  E  T  V  V  P  H  P  H  G  S  T  M  S  V  R  R  H  S  S  L  M  Q  G  N  A  G  E  G  V  G  S  M  G  I  G  G  G  W  Q  L  A  W  K  W  S  E  R  E  G  E  D  G  I  K  E  G  G  F  K  R  I  Y  L  H  Q  E  A  G  P  S  S  R  R  G  S  L  V  S  V  P  G  G  D  I  H  E  D  G  E  F  I  Q  A  A  A  L  V  S  Q  P  A  V  Y  S  K  E  L  M  D  Q  H  P  V  G  P  A  M  V  H  P  S  E  T  A  S  K  G  P  S  W  A  A  L  L  E  P  G  V  K  R  A  L  I  V  G  I  G  I  Q  I  L  Q  Q  :  F  S  G  I  N  G  V  M  Y  Y  T  P  Q  I  L  E  Q  A  G  V  G  V  L  L  S  N  F  G  I  A  S  D  S  A  S  F  L  I  S  A  L  T  N  F  L  M  L  P  S  V  A  I  A  M  R  F  M  D  V  A  G  R  R :   S  L  L  L  Y  T  I  P  V  L  I  L  S  L  I  C  L  V  I  G  N  T  V  N  L  G  S  V  A  H  A  V  V  S  T  I  C  V  I  L  Y  F  C  F  F  V  T  G  Y  G  P  I  P  N  I  L  C  S  E  I  F  P  T  R  V  R  G  L  C  I  A  I  C  A  L  V  F  W  I  C  D  V  I  V  T  Y  T  L  P  V  M  L  N  S  I  G  L  S  G  V  F  G  I  Y  A  I  V  C  V  I  S  W  I  F  V  F  L  R  V  P  E  T  K  G  M  P  L  E  V  I  T  E  F  F  A  V  G  A  R  Q  A  A  A  I  A  K  H  E  *  L  V  L  R  Y  L  L  S  D  L  L  Q  V  C  S  K  I  C  R  K  *  K  N  V  I  L  S  R  C  P  P  F  Y  I  H  L  V  L  A  F  L  N  S  Y  Y  C  Y  I  C  P  P  F  *  D  V  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87659" stop="87572"/>
                    <exon start="86867" stop="85927"/>
                    <exon start="85336" stop="85149"/>
                    <exon start="84464" stop="84017"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESPRWLVSKGRMVEAKQVLQKLRGIEDVSGEMALLVEGLAVGIEPSIEEYIIGPADELTEDQDLATDKDHIKLYGPEEGLSWVAKPVTGQSSLALVSRQGSMVQQSVPLMDPLVTLFGSVHEKLPDTGSMRSMLFPNFGSMISTMDPHVKDDHWDEESLQREGDDYPSDGGADSDDNLQSPLISRQTTAVETVVPHPHGSTMSVRRHSSLMQGNAGEGVGSMGIGGGWQLAWKWSEREGEDGIKEGGFKRIYLHQEAGPSSRRGSLVSVPGGDIHEDGEFIQAAALVSQPAVYSKELMDQHPVGPAMVHPSETASKGPSWAALLEPGVKRALIVGIGIQILQQFSGINGVMYYTPQILEQAGVGVLLSNFGIASDSASFLISALTNFLMLPSVAIAMRFMDVAGRRSLLLYTIPVLILSLICLVIGNTVNLGSVAHAVVSTICVILYFCFFVTGYGPIPNILCSEIFPTRVRGLCIAICALVFWICDVIVTYTLPVMLNSIGLSGVFGIYAIVCVISWIFVFLRVPETKGMPLEVITEFFAVGARQAAAIAKHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="93876" PGL_stop="94517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93876" e_stop="94367"/>
            <exon e_start="94434" e_stop="94517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93876" e_stop="94367" e_length="492"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94368" i_stop="94433" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94434" e_stop="94517" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93876" stop="94367"/>
              <exon start="94434" stop="94516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93902" stop="94367"/>
              <exon start="94434" stop="94517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTG : GGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAAC</gDNA_template>
            <first_frame> K  N  E  R  T  W  L  F  S  L  L  Q  N  F  H  Y  L  F  Y  F  Q  F  L  S  W  P  A  P  H  W  L  A  I  I  P  S  L  D  T  P  L  M  T  *  L  A  S  I  S  S  *  I  S  L  I  N  G  W  I  N  M  E  R  F  I  R  A  L  K  R  N  Y  I  G  L  R  F  S  R  K  I  *  S  I  L  M  K  G  I  K  W  L  P  T  I  G  L  V  *  M  S  S  L  I  *  A  M  M  S  L  R  K  C  I  *  D  *  K  L  I  K  S  C  L  I  K  E  R  N  Y  L  K  K  N  L  R  I  E  I  L  L  I  C  L  S  L  W  I  G  G  K  K  V  L  L  P  L  *  R  T  R  V  N  V  :  G  V  V  G  H  F  Q  R  W  L  Q  *  R  E  L  T  K  *  K  Q  G  I  *  H  P  C  L  N </first_frame>
            <second_frame>  K  T  N  E  H  G  S  F  L  F  Y  K  I  F  T  T  C  F  I  F  N  F  S  P  G  L  H  L  I  G  S  R  S  F  H  R  W  I  L  L  *  *  L  D  L  H  R  *  A  H  K  S  L  *  *  M  D  G  *  T  W  K  D  L  *  E  H  *  R  E  I  T  *  V  *  D  F  Q  G  K  F  E  A  Y  *  *  K  E  *  N  G  Y  Q  L  L  A  W  S  K  *  V  L  *  F  E  P  *  *  V  *  G  N  V  F  R  T  E  S  *  S  R  V  A  *  *  K  R  E  I  I  S  R  R  I  C  V  *  R  F  C  *  F  A  *  V  C  G  L  E  E  K  R  C  C  Y  P  C  E  E  P  G  S  M  W :   E  L  L  G  I  F  N  G  G  C  S  R  G  N  *  P  N  K  N  R  E  F  D  I  L  V  *   </second_frame>
            <third_frame>   K  R  T  N  M  A  L  F  S  F  T  K  F  S  L  L  V  L  F  S  I  S  L  L  A  C  T  S  L  A  R  D  H  S  I  V  G  Y  S  S  D  D  L  T  C  I  D  K  L  I  N  L  F  D  K  W  M  D  K  H  G  K  I  Y  K  S  I  E  E  K  L  H  R  F  E  I  F  K  E  N  L  K  H  I  D  E  R  N  K  M  V  T  N  Y  W  L  G  L  N  E  F  S  D  L  S  H  D  E  F  K  E  M  Y  L  G  L  K  V  D  Q  E  L  L  N  K  R  E  K  L  S  Q  E  E  F  A  Y  R  D  F  V  D  L  P  K  S  V  D  W  R  K  K  G  A  V  T  P  V  K  N  Q  G  Q  C   : G  S  C  W  A  F  S  T  V  A  A  V  E  G  I  N  Q  I  K  T  G  N  L  T  S  L  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93878" stop="94367"/>
                    <exon start="94434" stop="94516"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTNMALFSFTKFSLLVLFSISLLACTSLARDHSIVGYSSDDLTCIDKLINLFDKWMDKHGKIYKSIEEKLHRFEIFKENLKHIDERNKMVTNYWLGLNEFSDLSHDEFKEMYLGLKVDQELLNKREKLSQEEFAYRDFVDLPKSVDWRKKGAVTPVKNQGQCGSCWAFSTVAAVEGINQIKTGNLTSLSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="98852" PGL_stop="95977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98852" e_stop="98791"/>
            <exon e_start="97304" e_stop="97111"/>
            <exon e_start="96499" e_stop="95977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.827" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98852" e_stop="98791" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.827">
            <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97304" e_stop="97111" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="96499" e_stop="95977" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98852" stop="98791"/>
              <exon start="97304" stop="97111"/>
              <exon start="96499" stop="96270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98845" stop="98791"/>
              <exon start="97304" stop="97111"/>
              <exon start="96499" stop="96061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98842" stop="98791"/>
              <exon start="97304" stop="97111"/>
              <exon start="96499" stop="95977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98839" stop="98791"/>
              <exon start="97304" stop="97111"/>
              <exon start="96499" stop="96463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAAGTAGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG : GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT : GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTATATGTTCCATTTTGGCAATGTTGACTTGTTTTTTGAATCAACTGTACTTTATGGCAAAAAAAAAAAAAACTTGGGAGCATTGACA</gDNA_template>
            <first_frame> L  K  *  S  G  V  Q  F  W  L  R  I  S  S  K  E  R  A  S  V  R :   E  L  T  C  L  V  Q  L  *  N  M  N  P  N  E  S  A  K  S  H  A  K  P  D  I  I  L  T  G  T  A  K  T  C  P  I  G  P  P  L  G  L  V  D  I  G  S  S  D  N  A  Y  I  F  R  V  A  L  P  G  V  R  H  K   : C  N  I  Q  F  D  I  Q  R  E  G  R  V  R  I  E  G  V  I  T  E  S  E  A  L  K  N  S  L  K  G  Y  E  M  K  V  Q  Q  L  P  S  P  G  P  F  T  I  S  F  N  L  P  G  P  V  D  P  R  L  C  S  P  Q  F  R  T  D  G  I  L  E  V  I  V  M  K  Y  Q  I  P  L  V  S  A  E  G  L  P  E  N  W  Y  N  G  S  F  P  A  P  *  I  L  F  G  P  Q  S  L  *  H  M  R  I  L  L  T  L  Q  L  L  Y  *  I  *  H  G  I  S  N  D  F  S  T  S  R  *  P  Y  L  Y  T  K  G  F  C  I  I  C  S  I  L  A  M  L  T  C  F  L  N  Q  L  Y  F  M  A  K  K  K  K  T  W  E  H  *   </first_frame>
            <second_frame>  *  S  R  A  A  F  N  F  G  Y  E  S  L  Q  R  R  G  L  Q  *   : G  S  L  L  A  W  Y  S  C  K  T  *  I  Q  M  N  L  Q  S  L  M  P  N  P  I  S  F  *  L  G  L  Q  K  H  V  Q  L  D  R  H  L  V  W  L  T  *  A  V  V  I  M  H  I  F  F  V  L  R  F  L  V  *  G  I  N  :  V  I  S  N  L  T  Y  R  E  K  G  E  S  G  *  K  V  *  L  Q  R  V  R  L  *  K  T  H  S  R  V  M  R  *  K  F  S  S  F  L  P  L  G  L  L  P  Y  R  S  I  C  Q  D  L  L  I  P  D  Y  V  P  R  S  L  E  P  M  A  F  W  K  S  L  *  *  N  I  R  Y  L  W  F  Q  Q  K  V  C  L  R  I  G  T  M  A  L  S  Q  L  L  E  F  Y  L  V  H  N  P  Y  D  T  *  E  S  Y  L  L  Y  N  S  C  I  E  Y  N  M  A  S  A  T  T  S  Q  L  L  G  S  H  T  C  T  P  R  D  F  A  L  Y  V  P  F  W  Q  C  *  L  V  F  *  I  N  C  T  L  W  Q  K  K  K  K  L  G  S  I  D  </second_frame>
            <third_frame>   E  V  E  R  R  S  I  L  A  T  N  L  F  K  G  E  G  F  S  E  :  G  A  Y  L  L  G  T  A  V  K  H  E  S  K  *  I  C  K  V  S  C  Q  T  R  Y  H  S  D  W  D  C  K  N  M  S  N  W  T  A  T  W  F  G  *  H  R  Q  *  *  *  C  I  Y  F  S  C  C  A  S  W  C  K  A  *  M :   *  Y  P  I  *  H  T  E  R  R  E  S  P  D  R  R  C  D  Y  R  E  *  G  F  E  K  L  T  Q  G  L  *  D  E  S  S  A  A  S  F  P  W  A  F  Y  H  I  V  Q  F  A  R  T  C  *  S  Q  I  M  F  P  A  V  *  N  R  W  H  F  G  S  H  C  D  E  I  S  D  T  F  G  F  S  R  R  F  A  *  E  L  V  Q  W  L  F  P  S  S  L  N  S  I  W  S  T  I  P  M  T  H  E  N  P  T  Y  S  T  T  L  V  L  N  I  T  W  H  Q  Q  R  L  L  N  F  *  V  A  I  P  V  H  Q  G  I  L  H  Y  M  F  H  F  G  N  V  D  L  F  F  E  S  T  V  L  Y  G  K  K  K  K  N  L  G  A  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97276" stop="97111"/>
                    <exon start="96499" stop="96201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMNPNESAKSHAKPDIILTGTAKTCPIGPPLGLVDIGSSDNAYIFRVALPGVRHKCNIQFDIQREGRVRIEGVITESEALKNSLKGYEMKVQQLPSPGPFTISFNLPGPVDPRLCSPQFRTDGILEVIVMKYQIPLVSAEGLPENWYNGSFPAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="99748" PGL_stop="99199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99748" e_stop="99199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99748" e_stop="99199" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99748" stop="99199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATGGAAGCAACTTTGTTTTCCCCTGCGCGCTGCAAAGGTGAATTTTATATGCACCATTATAGTAGCTTTGAGGCTGATTCAAGCGTAAAAAACTAATCAGATGTCCGAGTTCTTCGATTAGGCCTTCAGTGCCTGCTCTGTTTGTACCAGCCAATTGGAGGCAAGAAGCTGATGATACTTTGGAGGATTCCTTCGTCACCTTCACTTGAAAATTTTGACTTTCTTATTGCTCTTTGTAAAGGAACACATTGATTACACAGGGTATATTGAACGGATCAAGGTGTTTTTTGTCCCAAACAGACTTGAGGTGGTTCCAGTTTTGTACGTGGACATGGTTAGCTTGTAATCATCATTAAAACCAAATTCCTATTCTGAAAAATCCCTACTTATAACTCTTGTATGTATCTTTCTTTTTTGCATAAATTCAGCTGAGGCTATCTGGAACTCTTGTAATCAGTCAATTTCTGTTGCTTTTGATATATAATAGTGGAACTTTTGCGTTAAGTTGGTTACTTGGGTCATTCAATGAAATTCTTACTATGAGGCC</gDNA_template>
            <first_frame> L  M  E  A  T  L  F  S  P  A  R  C  K  G  E  F  Y  M  H  H  Y  S  S  F  E  A  D  S  S  V  K  N  *  S  D  V  R  V  L  R  L  G  L  Q  C  L  L  C  L  Y  Q  P  I  G  G  K  K  L  M  I  L  W  R  I  P  S  S  P  S  L  E  N  F  D  F  L  I  A  L  C  K  G  T  H  *  L  H  R  V  Y  *  T  D  Q  G  V  F  C  P  K  Q  T  *  G  G  S  S  F  V  R  G  H  G  *  L  V  I  I  I  K  T  K  F  L  F  *  K  I  P  T  Y  N  S  C  M  Y  L  S  F  L  H  K  F  S  *  G  Y  L  E  L  L  *  S  V  N  F  C  C  F  *  Y  I  I  V  E  L  L  R  *  V  G  Y  L  G  H  S  M  K  F  L  L  *  G  </first_frame>
            <second_frame>  *  W  K  Q  L  C  F  P  L  R  A  A  K  V  N  F  I  C  T  I  I  V  A  L  R  L  I  Q  A  *  K  T  N  Q  M  S  E  F  F  D  *  A  F  S  A  C  S  V  C  T  S  Q  L  E  A  R  S  *  *  Y  F  G  G  F  L  R  H  L  H  L  K  I  L  T  F  L  L  L  F  V  K  E  H  I  D  Y  T  G  Y  I  E  R  I  K  V  F  F  V  P  N  R  L  E  V  V  P  V  L  Y  V  D  M  V  S  L  *  S  S  L  K  P  N  S  Y  S  E  K  S  L  L  I  T  L  V  C  I  F  L  F  C  I  N  S  A  E  A  I  W  N  S  C  N  Q  S  I  S  V  A  F  D  I  *  *  W  N  F  C  V  K  L  V  T  W  V  I  Q  *  N  S  Y  Y  E  A </second_frame>
            <third_frame>   D  G  S  N  F  V  F  P  C  A  L  Q  R  *  I  L  Y  A  P  L  *  *  L  *  G  *  F  K  R  K  K  L  I  R  C  P  S  S  S  I  R  P  S  V  P  A  L  F  V  P  A  N  W  R  Q  E  A  D  D  T  L  E  D  S  F  V  T  F  T  *  K  F  *  L  S  Y  C  S  L  *  R  N  T  L  I  T  Q  G  I  L  N  G  S  R  C  F  L  S  Q  T  D  L  R  W  F  Q  F  C  T  W  T  W  L  A  C  N  H  H  *  N  Q  I  P  I  L  K  N  P  Y  L  *  L  L  Y  V  S  F  F  F  A  *  I  Q  L  R  L  S  G  T  L  V  I  S  Q  F  L  L  L  L  I  Y  N  S  G  T  F  A  L  S  W  L  L  G  S  F  N  E  I  L  T  M  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="106032" PGL_stop="103169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106032" e_stop="105968"/>
            <exon e_start="105014" e_stop="104572"/>
            <exon e_start="103509" e_stop="103169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.697" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106032" e_stop="105968" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.697" acc_prob="0.637">
            <gDNA_intron_boundary i_start="105967" i_stop="105015" i_length="953"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105014" e_stop="104572" e_length="443"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104571" i_stop="103510" i_length="1062"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="103509" e_stop="103169" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106032" stop="105968"/>
              <exon start="105014" stop="104572"/>
              <exon start="103509" stop="103169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106025" stop="105968"/>
              <exon start="105014" stop="104572"/>
              <exon start="103509" stop="103350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106025" stop="105968"/>
              <exon start="105014" stop="104572"/>
              <exon start="103509" stop="103350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106024" stop="105968"/>
              <exon start="105014" stop="104606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGCATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGG : AATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTG : GTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGGGCCTGTCGATCCGAGGTTGTTTTCACCAAATTTCAGATCAGATGGCATTTTTGAAGCTGTTGTAATGAAATACGAGCAGTAGCTAGTTCATGTAAACAACCATTAAAGTCAGAACCCACCACAGAAAGCTGTCTGCTCTTGGATTTCTTGTTATGATTAGTGGTGGGCTGAAGGCTAATGT</gDNA_template>
            <first_frame> L  L  H  K  T  W  L  L  Q  H  K  V  *  K  S  L  G  V  Q  *  I  G :   I  S  F  G  V  G  *  L  L  N  A  Y  S  M  F  L  M  K  D  M  V  N  M  E  S  Q  *  M  S  N  M  E  C  L  H  P  K  K  K  I  K  R  I  L  W  K  R  S  K  E  K  S  N  G  E  D  S  A  G  N  G  T  S  L  M  K  M  E  H  N  V  T  K  R  H  H  S  D  S  M  T  S  G  V  D  R  P  C  M  M  S  L  L  P  L  P  N  L  E  Y  C  N  S  G  G  P  A  I  L  T  G  T  A  C  K  G  V  A  G  P  P  V  G  V  V  D  I  G  V  S  I  S  A  Y  Y  F  R  I  A  L  P  G  V  K  K  D  P   : G  E  F  N  C  E  I  E  K  D  G  K  V  L  I  R  G  V  T  S  T  G  G  R  T  V  S  R  Y  S  R  V  F  D  M  K  I  Q  Q  Q  C  P  S  G  P  F  T  V  S  F  R  L  P  G  P  V  D  P  R  L  F  S  P  N  F  R  S  D  G  I  F  E  A  V  V  M  K  Y  E  Q  *  L  V  H  V  N  N  H  *  S  Q  N  P  P  Q  K  A  V  C  S  W  I  S  C  Y  D  *  W  W  A  E  G  *  C </first_frame>
            <second_frame>  Y  C  I  K  H  G  C  C  N  I  K  F  E  K  A  W  V  F  N  E  *   : E  L  V  L  E  L  D  N  C  *  M  L  T  V  C  F  *  *  K  I  W  *  T  W  K  V  S  K  C  Q  T  W  N  A  Y  I  L  K  R  R  L  R  E  Y  F  G  S  G  P  R  R  N  R  M  G  K  T  L  L  E  M  V  H  H  *  *  R  W  N  T  M  *  Q  R  G  I  I  L  I  Q  *  P  V  V  *  T  G  L  A  *  C  H  F  S  L  F  P  T  W  N  I  V  T  R  G  A  L  L  S  *  Q  E  R  H  A  K  G  *  L  D  H  L  L  E  L  L  I  S  V  L  A  Y  L  L  T  I  F  V  L  L  Y  L  E  S  R  K  I  L  :  V  S  S  T  V  R  L  K  K  M  G  R  S  L  F  G  G  *  H  Q  L  V  E  E  P  Y  Q  D  I  L  G  S  L  I  *  K  F  S  N  N  V  H  L  V  L  S  P  S  P  F  V  C  P  G  L  S  I  R  G  C  F  H  Q  I  S  D  Q  M  A  F  L  K  L  L  *  *  N  T  S  S  S  *  F  M  *  T  T  I  K  V  R  T  H  H  R  K  L  S  A  L  G  F  L  V  M  I  S  G  G  L  K  A  N   </second_frame>
            <third_frame>   I  A  *  N  M  A  V  A  T  *  S  L  K  K  L  G  C  S  M  N  R  :  N  *  F  W  S  W  I  T  V  E  C  L  Q  Y  V  S  D  E  R  Y  G  E  H  G  K  S  V  N  V  K  H  G  M  L  T  S  *  K  E  D  *  E  N  T  L  E  A  V  Q  G  E  I  E  W  G  R  L  C  W  K  W  Y  I  I  D  E  D  G  T  Q  C  D  K  E  A  S  F  *  F  N  D  Q  W  C  R  Q  A  L  H  D  V  T  S  P  S  S  Q  L  G  I  L  *  L  G  G  P  C  Y  L  D  R  N  G  M  Q  R  G  S  W  T  T  C  W  S  C  *  Y  R  C  *  H  I  C  L  L  F  S  Y  C  S  T  W  S  Q  E  R  S  W :   *  V  Q  L  *  D  *  K  R  W  E  G  P  Y  S  G  G  D  I  N  W  W  K  N  R  I  K  I  F  S  G  L  *  Y  E  N  S  A  T  M  S  I  W  S  F  H  R  L  L  S  F  A  R  A  C  R  S  E  V  V  F  T  K  F  Q  I  R  W  H  F  *  S  C  C  N  E  I  R  A  V  A  S  S  C  K  Q  P  L  K  S  E  P  T  T  E  S  C  L  L  L  D  F  L  L  *  L  V  V  G  *  R  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104932" stop="104572"/>
                    <exon start="103509" stop="103268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNMECLHPKKKIKRILWKRSKEKSNGEDSAGNGTSLMKMEHNVTKRHHSDSMTSGVDRPCMMSLLPLPNLEYCNSGGPAILTGTACKGVAGPPVGVVDIGVSISAYYFRIALPGVKKDPGEFNCEIEKDGKVLIRGVTSTGGRTVSRYSRVFDMKIQQQCPSGPFTVSFRLPGPVDPRLFSPNFRSDGIFEAVVMKYEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="109704" PGL_stop="112773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109704" e_stop="110012"/>
            <exon e_start="110269" e_stop="110611"/>
            <exon e_start="111082" e_stop="111353"/>
            <exon e_start="111580" e_stop="111776"/>
            <exon e_start="112201" e_stop="112773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="109704" e_stop="110012" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110013" i_stop="110268" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110269" e_stop="110611" e_length="343"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="110612" i_stop="111081" i_length="470"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111082" e_stop="111353" e_length="272"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.992">
            <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111580" e_stop="111776" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="112201" e_stop="112773" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109704" stop="110012"/>
              <exon start="110269" stop="110611"/>
              <exon start="111082" stop="111353"/>
              <exon start="111580" stop="111776"/>
              <exon start="112201" stop="112773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109810" stop="110012"/>
              <exon start="110269" stop="110553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110408" stop="110611"/>
              <exon start="111082" stop="111297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110412" stop="110611"/>
              <exon start="111082" stop="111296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110412" stop="110611"/>
              <exon start="111082" stop="111293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111285" stop="111353"/>
              <exon start="111580" stop="111776"/>
              <exon start="112201" stop="112765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111285" stop="111353"/>
              <exon start="111580" stop="111776"/>
              <exon start="112201" stop="112585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111285" stop="111353"/>
              <exon start="111580" stop="111776"/>
              <exon start="112201" stop="112470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111745" stop="111776"/>
              <exon start="112201" stop="112773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACAGAGGAAATCAATGTATGGGAGGGGCGGTGAGCAGTGAACTGATTACTAACTAGTAAAGAGCATTGTGTTGGTGTTTCCAAAGCTAGGTTAAGTTGTGGGGAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCGTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAG : GGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCAC : TAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG : GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG : GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAAGGAAATTGAAG</gDNA_template>
            <first_frame> *  D  R  G  N  Q  C  M  G  G  A  V  S  S  E  L  I  T  N  *  *  R  A  L  C  W  C  F  Q  S  *  V  K  L  W  G  R  R  E  K  C  I  *  A  K  T  K  G  *  R  R  R  V  S  W  L  L  V  D  L  V  L  *  A  P  H  F  V  L  N  S  S  E  G  V  L  V  L  S  K  H  L  I  L  E  P  I  L  L  G  H  L  N  S  V  N  V  G  F  K  S  F  K  :  G  I  *  Q  T  N  N  K  S  R  K  H  Y  K  G  Q  I  V  F  S  I  L  L  L  M  A  C  P  G  K  K  C  F  S  I  V  V  L  M  R  L  I  L  M  E  P  A  T  L  L  M  L  A  F  T  I  T  L  R  G  L  F  M  S  A  H  L  M  L  F  M  V  V  R  K  F  L  M  A  M  R  T  Y  L  I  S  Q  *  M  T  M  L  I  H  M  D  E  A  N  Q  L  L  N  N  W  S  *  R  A  T  V  V  P  S   : L  R  T  M  V  N  A  F  T  P  A  Q  F  V  Q  L  L  Y  M  V  Q  V  K  K  G  T  C  Q  G  S  *  L  L  Q  S  *  V  C  F  P  L  K  S  V  H  Q  M  *  N  Q  I  G  C  T  S  T  I  L  Y  W  R  F  Y  W  L  A  W  D  F  W  M  T  S  L  A  E  K  G  I  Q  L  L  L  V  N  L  I  L  Y  Q  M  :  V  L  L  S  T  V  S  S  S  F  A  L  Y  *  K  A  W  I  M  I  Y  Q  R  H  H  *  L  S  L  M  H  F  F  W  E  E  F  S  G  L  S  T  P  F  C  I  L  G  *  I  V  G  G  F  L  N  L  *  S  F  L  L  K  S  T  R :   L  V  S  L  I  T  S  L  S  *  K  Q  K  R  N  L  V  T  S  Q  W  *  V  L  R  R  A  W  Q  Q  Q  L  H  I  G  K  K  E  N  V  G  V  W  T  D  L  Q  Y  G  H  G  C  F  V  *  L  E  C  W  G  C  L  L  L  H  I  C  P  T  M  D  P  F  P  *  L  E  Q  F  I  S  S  S  F  A  L  Y  W  R  *  K  *  Y  L  F  *  Q  L  L  H  M  *  V  K  L  Y  M  H  G  M  L  Q  K  Q  *  I  L  Q  M  Q  E  D  G  F  G  R  H  L  L  W  G  Y  F  P  Y  D  Y  F  *  R  E  L  K  S  R  D  Q  R  P  Y  F  S  F  K  K  I  *  R  F  F  F  I  I  N  E  F  N  L  *  S  *  S  C  T  A  L  H  L  L  D  W  I  V  Q  E  N  Q  G  N  *   </first_frame>
            <second_frame>  R  T  E  E  I  N  V  W  E  G  R  *  A  V  N  *  L  L  T  S  K  E  H  C  V  G  V  S  K  A  R  L  S  C  G  E  G  E  K  N  A  S  E  R  K  R  R  D  R  E  E  E  F  R  G  Y  W  W  T  W  F  Y  R  R  R  T  L  C  *  T  R  Q  K  G  C  S  S  C  Q  S  I  *  S  *  N  P  F  S  L  V  I  S  T  P  S  M  W  G  S  N  H  S  R :   G  Y  N  R  Q  T  T  S  P  E  S  T  T  R  V  R  L  C  F  P  S  C  F  L  W  H  V  R  E  R  N  A  S  V  *  S  C  *  *  G  *  Y  *  W  N  L  P  H  Y  *  C  L  P  S  P  S  H  *  E  A  C  L  C  Q  H  T  *  C  C  L  W  W  *  G  N  S  *  W  Q  *  E  P  T  L  F  P  N  R  *  P  C  *  S  I  W  T  K  Q  I  N  C  *  T  I  G  P  K  E  Q  P  S  S  L  H  :  *  E  Q  W  *  M  P  L  H  L  R  N  S  S  S  C  Y  I  W  S  R  *  R  K  A  P  A  K  D  H  N  S  Y  K  A  R  S  V  S  L  *  N  R  F  T  K  C  K  I  R  L  G  V  R  R  Q  S  C  I  G  A  F  I  G  *  H  G  T  F  G  *  H  P  W  Q  R  R  A  S  N  C  C  W  S  T  L  F  Y  I  R  W :   F  S  Y  Q  Q  F  R  V  P  S  P  F  T  E  K  P  G  L  *  S  T  K  D  I  T  S  C  L  S  C  T  S  S  G  K  N  F  L  G  F  L  L  L  S  V  S  L  V  E  *  *  V  A  S  S  T  S  D  P  S  C  *  S  L  Q   : G  W  C  H  S  L  L  L  F  P  K  S  K  R  G  T  W  L  R  P  N  G  K  F  *  G  G  H  G  S  N  N  C  I  L  A  R  K  K  T  *  E  F  G  R  T  Y  N  M  G  M  A  V  L  C  N  W  N  V  G  V  V  C  C  C  I  S  A  R  L  W  T  H  S  L  N  *  S  S  S  S  L  L  L  S  L  Y  I  G  V  E  S  D  I  C  S  S  S  C  C  T  C  R  *  S  Y  I  C  M  E  C  C  K  N  N  R  S  C  K  C  K  R  M  V  L  A  D  I  C  F  G  D  I  F  P  T  I  T  S  E  E  S  *  K  V  G  I  S  G  H  I  S  L  L  K  K  Y  E  G  F  F  L  *  *  T  S  L  T  C  D  P  N  L  V  L  L  C  I  S  W  T  G  L  S  K  K  I  K  E  I  E  </second_frame>
            <third_frame>   G  Q  R  K  S  M  Y  G  R  G  G  E  Q  *  T  D  Y  *  L  V  K  S  I  V  L  V  F  P  K  L  G  *  V  V  G  K  E  R  K  M  H  L  S  E  N  E  G  I  E  K  K  S  F  V  V  T  G  G  L  G  F  I  G  A  A  L  C  V  E  L  V  R  R  G  A  R  L  V  K  A  F  D  L  R  T  H  S  P  W  S  S  Q  L  R  Q  C  G  V  Q  I  I  Q   : G  D  I  T  D  K  Q  Q  V  Q  K  A  L  Q  G  S  D  C  V  F  H  L  A  S  Y  G  M  S  G  K  E  M  L  Q  Y  S  R  V  D  E  V  N  I  N  G  T  C  H  I  I  D  A  C  L  H  H  H  I  K  R  L  V  Y  V  S  T  P  N  V  V  Y  G  G  K  E  I  L  N  G  N  E  N  L  P  Y  F  P  I  D  D  H  V  D  P  Y  G  R  S  K  S  I  A  E  Q  L  V  L  K  S  N  R  R  P  F  T :   K  N  N  G  E  C  L  Y  T  C  A  I  R  P  A  A  I  Y  G  P  G  E  E  R  H  L  P  R  I  I  T  L  T  K  L  G  L  F  P  F  K  I  G  S  P  N  V  K  S  D  W  V  Y  V  D  N  L  V  L  A  L  L  L  A  S  M  G  L  L  D  D  I  P  G  R  E  G  H  P  I  A  A  G  Q  P  Y  F  I  S  D   : G  S  P  I  N  S  F  E  F  L  R  P  L  L  K  S  L  D  Y  D  L  P  K  T  S  L  A  V  S  H  A  L  L  L  G  R  I  F  W  A  F  Y  S  F  L  Y  P  W  L  N  S  R  W  L  P  Q  P  L  I  L  P  A  E  V  Y  K  :  V  G  V  T  H  Y  F  S  F  L  K  A  K  E  E  L  G  Y  V  P  M  V  S  S  K  E  G  M  A  A  T  I  A  Y  W  Q  E  R  K  R  R  S  L  D  G  P  T  I  W  A  W  L  F  C  V  I  G  M  L  G  L  F  A  A  A  Y  L  P  D  Y  G  P  I  P  L  I  R  A  V  H  L  F  F  F  R  S  I  L  A  L  K  V  I  F  V  L  A  A  A  A  H  V  G  E  A  I  Y  A  W  N  V  A  K  T  I  D  P  A  N  A  R  G  W  F  W  Q  T  F  A  L  G  I  F  S  L  R  L  L  L  K  R  A  K  K  *  G  S  A  A  I  F  L  F  *  K  N  M  K  V  F  F  Y  N  K  R  V  *  L  V  I  L  I  L  Y  C  F  A  S  P  G  L  D  C  P  R  K  S  R  K  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109802" stop="110012"/>
                    <exon start="110269" stop="110611"/>
                    <exon start="111082" stop="111353"/>
                    <exon start="111580" stop="111776"/>
                    <exon start="112201" stop="112635"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVGKERKMHLSENEGIEKKSFVVTGGLGFIGAALCVELVRRGARLVKAFDLRTHSPWSSQLRQCGVQIIQGDITDKQQVQKALQGSDCVFHLASYGMSGKEMLQYSRVDEVNINGTCHIIDACLHHHIKRLVYVSTPNVVYGGKEILNGNENLPYFPIDDHVDPYGRSKSIAEQLVLKSNRRPFTKNNGECLYTCAIRPAAIYGPGEERHLPRIITLTKLGLFPFKIGSPNVKSDWVYVDNLVLALLLASMGLLDDIPGREGHPIAAGQPYFISDGSPINSFEFLRPLLKSLDYDLPKTSLAVSHALLLGRIFWAFYSFLYPWLNSRWLPQPLILPAEVYKVGVTHYFSFLKAKEELGYVPMVSSKEGMAATIAYWQERKRRSLDGPTIWAWLFCVIGMLGLFAAAYLPDYGPIPLIRAVHLFFFRSILALKVIFVLAAAAHVGEAIYAWNVAKTIDPANARGWFWQTFALGIFSLRLLLKRAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="117326" PGL_stop="115331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117326" e_stop="116939"/>
            <exon e_start="116608" e_stop="116237"/>
            <exon e_start="115352" e_stop="115331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117326" e_stop="116939" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="116938" i_stop="116609" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116608" e_stop="116237" e_length="372"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116236" i_stop="115353" i_length="884"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115352" e_stop="115331" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117326" stop="116939"/>
              <exon start="116608" stop="116241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117324" stop="116939"/>
              <exon start="116608" stop="116237"/>
              <exon start="115352" stop="115331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117324" stop="116939"/>
              <exon start="116608" stop="116471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117323" stop="116939"/>
              <exon start="116608" stop="116237"/>
              <exon start="115352" stop="115334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG : TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG : GCTGCTTTCCTCTCTGCTCTTG</gDNA_template>
            <first_frame> S  L  S  S  *  I  L  *  W  K  V  A  F  Q  E  P  *  D  I  Q  I  L  *  E  Y  Y  Y  S  *  I  Q  R  *  P  H  *  K  D  N  L  Y  *  G  S  Q  D  H  C  W  R  R  R  L  N  S  *  G  F  R  F  L  R  D  M  G  F  D  Q  L  H  C  *  L  F  Q  V  S  D  Q  V  G  R  K  R  V  K  V  N  I  C  L  S  S  A  K  C  *  R  Q  W  N  V  H  *  F  Y  S  P  Q  E  K  N  L  Q  S  L  Q  N  S  L  Q  D  C  L  F  R  F  *  *   : V  *  F  D  S  L  C  K  M  L  C  *  *  *  *  *  S  W  R  E  *  F  R  A  S  T  G  *  D  *  *  G  S  *  D  R  L  D  *  Q  R  D  F  A  P  F  R  S  S  Y  A  L  W  R  *  L  E  E  G  C  *  A  C  W  W  Q  K  H  *  G  M  C  G  *  I  C  Q  A  S  F  R  *  A  V  Y  G  P  S  *  I  C  R  N  G  *  *  I  Q  V  *  N  Y  V  S  S  V  *  E  K  A  P  H  T  L  C  *  Y  K  Q  P  N  Y  S  T   : G  C  F  P  L  C  S   </first_frame>
            <second_frame>  R  F  L  P  E  F  F  D  G  R  S  P  S  K  N  P  K  T  Y  K  Y  Y  R  N  T  I  I  R  R  F  R  D  N  P  T  K  K  I  T  F  T  E  A  R  K  T  I  V  G  D  V  G  S  I  R  R  V  F  D  F  S  E  T  W  G  L  I  N  Y  T  A  N  S  S  K  S  L  I  K  W  E  E  K  E  S  K  S  T  S  A  S  A  P  Q  N  A  D  A  N  G  T  S  T  D  F  T  L  P  K  K  R  I  C  N  L  C  K  T  V  C  R  I  A  C  F  A  S  D  K  :  Y  D  L  T  L  C  A  R  C  Y  V  S  N  D  N  R  V  G  V  N  N  S  E  L  R  R  V  E  I  S  E  E  V  K  T  D  W  T  D  K  E  T  L  H  L  L  E  A  L  M  H  Y  G  D  D  W  K  K  V  A  E  H  V  G  G  R  S  T  K  E  C  V  A  R  F  V  K  L  P  F  G  E  Q  F  M  G  P  P  E  S  A  E  M  D  S  E  S  R  S  E  T  M  Y  L  Q  S  K  R  R  R  L  T  P  F  A  D  T  S  N  P  I  I  A  Q  :  A  A  F  L  S  A  L  </second_frame>
            <third_frame>   A  F  F  L  N  S  L  M  E  G  R  L  P  R  T  L  R  H  T  N  T  I  G  I  L  L  F  V  D  S  E  I  T  P  L  K  R  *  P  L  L  R  L  A  R  P  L  L  E  T  S  A  Q  F  V  G  F  S  I  S  Q  R  H  G  V  *  S  I  T  L  L  T  L  P  S  L  *  S  S  G  K  K  K  S  Q  S  Q  H  L  P  Q  L  R  K  M  L  T  P  M  E  R  P  L  I  L  L  S  P  R  K  E  S  A  I  S  A  K  Q  F  A  G  L  L  V  S  L  L  I  S :   M  I  *  L  F  V  Q  D  A  M  L  V  M  I  I  E  L  A  *  I  I  Q  S  F  D  G  L  R  L  V  R  K  L  R  Q  I  G  L  T  K  R  L  C  T  F  *  K  L  L  C  I  M  A  M  I  G  R  R  L  L  S  M  L  V  A  E  A  L  R  N  V  W  L  D  L  S  S  F  L  S  V  S  S  L  W  A  L  L  N  L  Q  K  W  I  V  N  P  G  L  K  L  C  I  F  S  L  R  E  G  A  S  H  P  L  L  I  Q  A  T  Q  L  *  H  R :   L  L  S  S  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117325" stop="116939"/>
                    <exon start="116608" stop="116237"/>
                    <exon start="115352" stop="115332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLPEFFDGRSPSKNPKTYKYYRNTIIRRFRDNPTKKITFTEARKTIVGDVGSIRRVFDFSETWGLINYTANSSKSLIKWEEKESKSTSASAPQNADANGTSTDFTLPKKRICNLCKTVCRIACFASDKYDLTLCARCYVSNDNRVGVNNSELRRVEISEEVKTDWTDKETLHLLEALMHYGDDWKKVAEHVGGRSTKECVARFVKLPFGEQFMGPPESAEMDSESRSETMYLQSKRRRLTPFADTSNPIIAQAAFLSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 280 chains have been computed
$ 
$ memory statistics:
$ 389632 bytes spliced alignments in total
$ 188 spliced alignments have been stored
$ 2072 bytes was the average size of a spliced alignment
$ 41912 bytes predicted gene locations in total
$ 28 predicted gene locations have been stored
$ 1496 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 299 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-20 05:11:55
-->
