<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-22 18:20:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="5668" stop="4521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5374" g_stop="4821" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5374" e_stop="4821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGTCCCGTCTAGTACTAGGGAGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCCAGTATTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTGCAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTTATGAGCTACTACACAAGATGGATATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGAGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342484" ref_strand="+" ref_description="SGN-U342484        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-90, score=315)">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="15676" stop="14489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15376" g_stop="14789" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U342484" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15376" e_stop="14789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCGGGGAAGACCAATGTTGTGGCCGATGCTTTGAGAAGGAAGACTCATAGCATTGGGAGTCTTGTATCTCTTAGTGTTGAGGAGAGACCATTGGTTAGAGATGTTCAATTGTTAGCTAACAATCTTGTCCGATTGCAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGTAGATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGTTGTCCTTCATTCTGATGGTGTCTTGAGGATCGGAGGCAAGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTTTTGATATTCCATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTCTGTTTTGAGGTGTTTGACTTGCCAGGGGGTCAAGTGTGAGCACCAGCGGCCTAGGGGTGTATCTCAAAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339521" ref_strand="+" ref_description="SGN-U339521        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 0.0001, score=50.4)">
      <seq>gcacgagttgagagtctgagacaggatggtttatcggttacagagtgtaaggcgcgtttttgccagttgtctaggcatgcgttggccattattccaaatgaaacagagaggatccgtagatttgtgaggggattgactttctctatcaggtcagctgtgtttcggacatctaggggggacttctttccagtctattgtgagcgccgccaaagaggcagaattgatggagagagaggagtttggggaccctaaaagagctcgtatatcaggtcaatttcagggtgcctcatctggaggtaggggatcacagagagtgagtggttcttttcagcagcggggacctattcatgcatctatgccgacatttgagggtggccagacatctaagggttcttatggcccgggtcatggctcgtacggttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="18215" stop="17192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17919" g_stop="17492" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U339521" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17919" e_stop="17492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGAGGTTTGAGAGTCTGAGACAGGATGGTTTATCAGTTACAGAGTATGAGGCGCGTTTTTGCCAGTTGTCTAGGCATGCGTTGTCCATTATTCCAAATAAGACAGAGAGGATCCACAGATTTGTGAGGGAATTGACTTTCTCTATTAGGTCAGCTGTGTTTCGGGCATTAGGGAGGGGGCTTCTTTCCAGTCCATTGTGAGCGCCGCCAAAGAGGCAGAATTGATGGAGAGAGAAGAGTTTGGGGACCCTAAAAGAGCCCGTATATCAGGTCAGTTTCATGGTGCCTCATCTGGAGGTAGGGGATCACAAAGAGTGAGTGGTTCTTTTCAGCAGCGGGGACCTATTCATGCATCTATGCCAACATTTGAGGGTGGACAGACATCTAGGGGTTCTTATAGCCCGGGTCAGGGCTCGTATGTTTCAC</genome_strand>
        <mrna_strand>GCACGA-G-TTGAGAGTCTGAGACAGGATGGTTTATCGGTTACAGAGTGTAAGGCGCGTTTTTGCCAGTTGTCTAGGCATGCGTTGGCCATTATTCCAAATGAAACAGAGAGGATCCGTAGATTTGTGAGGGGATTGACTTTCTCTATCAGGTCAGCTGTGTTTCGGACATCTAGG-GGGGACTTCTTTCCAGTCTATTGTGAGCGCCGCCAAAGAGGCAGAATTGATGGAGAGAGAGGAGTTTGGGGACCCTAAAAGAGCTCGTATATCAGGTCAATTTCAGGGTGCCTCATCTGGAGGTAGGGGATCACAGAGAGTGAGTGGTTCTTTTCAGCAGCGGGGACCTATTCATGCATCTATGCCGACATTTGAGGGTGGCCAGACATCTAAGGGTTCTTATGGCCCGGGTCATGGCTCGTACGGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323701" ref_strand="+" ref_description="SGN-U323701        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: EMB3003 | dihydrolipoamide S-acetyltransferase, putative, similar to dihydrolipoamide S-acetyltransferase (LTA2) (Arabidopsis thaliana) GI:5881963; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain | chr1:12587730-12590120 REVERSE | Aliases: F12K21.24, F12K21_24, EMB3003, EMBRYO DEFECTIVE 3003(evalue: 9e-38, score=154) genbank/nr: gi|15218630|ref|NP_174703.1| dihydrolipoamide S-acetyltransferase -related [Arabidopsis thaliana] gi|12323852|gb|AAG51893.1| dihydrolipoamide S-acetyltransferase, putative; 19109-21166 [Arabidopsis thaliana] gi|22135832|gb|AAM91102.1| At1g34430/F7P12_2 [Arabidopsis thaliana] gi|24111345|gb|AAN46796.1| At1g34430/F7P12_2 [Arabidopsis thaliana](evalue: 6e-36, score=154)">
      <seq>ggtaatgtagttgaagtctccgccctcattctctttcgatgcattcgagaaatccatttctatagaaaaacacacaaacctacgcttttcttttcaccattattaaaatcattcgatttttcttgatttgttcgcaaaaatgtctcatcttcttcaatccaccttcatccccaccacacccactaccctccgtcgccgttctgtgtttccgacgacccatttacggaaaacccatgttgtggaatcgaagatccgtgagattttcatgccagcacttagttctactatgactgaaggaaagattatcagttggatgaaaactgaaggtgataaactagctaaaggtgaatcagttgttgttgttgaatcggataaagctgatatggatgttgaatctttttatgatgggtatcttgctagtatcattgtacctgaaggtagttctgcacctgttggttctccaattgctcttcttgctgaatctgaagatgaaatttcacttgctaaatcgaaaactccgacatccacttctacttctagtccagctgctactgctagtgtaactgaagaggtttcaacggtagcagctgcggttgccggttacggctacgtcatcttctgatgctgcgcctgtgaaaatggcgtcgtcgattcacccagcatcagaaggggggaagagagtggtggcttcaccgtatgctaagaaattggctaaggaattggggttggatttgaggggagtggtggggagtgggcctaatgggaggattgtggcgaaggatgttgaagcagcagctggttctgctcctattggtgttgctgcagcggcgaagccaagtggcggggcaccacccgctccagcagtagaattagggacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="37224" stop="38709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37524" g_stop="38409" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="881" r_length="881" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U323701" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37524" e_stop="38409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGCAGCGGGCCTAATGGGAGGATTGTGGCAAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACT</genome_strand>
        <mrna_strand>GGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTT---G--CCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGGAGTGGGCCTAATGGGAGGATTGTGGCGAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGCGGGGCACCACCCGCTCCAGCAGTAGAATTAGGGACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321522" ref_strand="+" ref_description="SGN-U321522        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: EMB3003 | dihydrolipoamide S-acetyltransferase, putative, similar to dihydrolipoamide S-acetyltransferase (LTA2) (Arabidopsis thaliana) GI:5881963; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain | chr1:12587730-12590120 REVERSE | Aliases: F12K21.24, F12K21_24, EMB3003, EMBRYO DEFECTIVE 3003(evalue: 1e-105, score=379) genbank/nr: dihydrolipoamide(evalue: 2e-105, score=385)">
      <seq>gaagcagcagctggntctgctcctattggtgcttttgcagcggcgaagccaagtggtggtgcaccagcggccccagcagtagaagtggggacgactgtgccatttacgacaatgcagagtgcggtgagtcgaaatatggtggagagtttggcagttccaacttttagagtggggtatactattactactaatgcccttgatgctctctacaagaaggtcaagtcgaaaggagtgacaatgacagcattgttggcaaaagccacagcacttgcattggtgcaacatcctgttgtgaactctagttgtagagatgggaagagtttcacatataacagtagtattaacattgctgttgcggtcgccatagatggtggcttgattactcctgtacttcaggatgctgacaaggttgatttatactcattgtcaaggaaatggaaggagttggttgataaggcccgggctaagcaacttcaaccccatgaatacaccacaggcacttttaccctatccaaccttggaatgtttggcgttgaccgttttgatgccatcttaccaccaggaactggtgcaattatggctgttggagcatctcaacccacacttgttggaaccaaagatggtcgaattggcatgaaaaaccaaatgcaggtcaatgtcactgctgatcatcgggtaatatatggtgctgatttggcggctttcctgcaaaccttagcacagataattgaggatcctaaagaccttactctttaggctcttgtcctcaattgtgggagattagatgttttgtagtgtaatttgctcgagtttcagccaggagcttcatggagtgaacagaaaccatatgctataacatctgaagcatcatctaagtcacacttcagaagatgaatgtttatggatggttaggtcattttttcgcgtggttaatcttttttttttattggagtgtaaactcatgaggacatttttcatggctgccataaaattatggcctcaagatgagctctttgttgcttcatcattcaaatattgttgcaactttctattgattctatatttaagggtgttctgcaatttcagttgtatctgcagttcactattgccattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="38014" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38314" g_stop="38529" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38813" g_stop="39004" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="408" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39083" g_stop="39170" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="496" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43652" g_stop="43722" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="567" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43806" g_stop="43889" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="651" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44019" g_stop="44486" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="1119" r_length="468" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44487" i_stop="44541" i_length="55">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44542" g_stop="44549" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1120" r_stop="1127" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U321522" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1127</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38314" e_stop="38529"/>
          <exon e_start="38813" e_stop="39004"/>
          <exon e_start="39083" e_stop="39170"/>
          <exon e_start="43652" e_stop="43722"/>
          <exon e_start="43806" e_stop="43889"/>
          <exon e_start="44019" e_stop="44486"/>
          <exon e_start="44542" e_stop="44549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAGGTATGGTTTTTTGCTTTGTATTATTTCCTTGATTAGTTGTAAAAAGATTGGATTTTTTGGGATAAACTGGGAAGTGTATGCTATGTCATAGTTTAGATAAGCTGAAAATGCTAGCTGAGATGGTATATCTGAAAATCAGTAGATAAATGTATTTACTGCAACATCTAGACATTATGAGATTCTCTGAGAATAGGCAAACAGAAGTGGATCTTCTATGTTTTAGTAAATTTTAAGATAAGCAGTTTCATCAATTCAGTTCCTGAATGTATTTGTGAATTTGTAGGTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAGGTTAGTTTGAAAATCATTTTTTAATATTCTGATTTCACATATAGTGAAGTGATTGATATGATTAAATATTCATTACAGGTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAGGTATGCTATTACGTTAGATGAGTTAACAGTCTGATGTGATAGAGGTGTATACCTATCACCAGCTGATCATATTTATTTTTTTTGAAAACGATAATTGTTTCTATTTCTGTAGAACAGTAAATAGGTTTTCCTGAAAACCCTATTTACATAAGGAACTCTGACAATACTGACCTATCCCTACAGTGAGTCTAAGACATCAAAAATAGAGACGATATCGTTAGAGTAAATCTGATTACACCAAAAACACAGTGTCAAAAACTCTTAAGGTTCCTCTCTTTCCATATTGTGCACCAAATAGGGGCAGGACAATTCTTTAGTTACTTCTGTTTTTTTCTTGTGTCCCTGATTCTTCCTAGCTATGTAGAGCCTCTGAAATTCTCCCAGGCATGGACCAGGAGATGTTTTTAAGTCTGAGGAACAAGTTCCACAACTGCCAGTGACTCCACATATTGTTAGCTGCAACTGCCTGTCTTTATATTGGATGGTTTCTTGAACTAGATTCTTTAACTTGGATATTAGCTTACATCATTATTTCTGAAGTCCATATGAACAAGGCTCACACTCACTCAGTAGACTGATACATGCCTAGAACTGATTAAGAGATAGGAGTTGGTCTGCTACTACAAGATATATATTTGGAGTCTGGAGATAGCACTTAATGTTTCTTCAAAACTCCTTTTCCATATGTGCATGCTCCTCATGTTGAATTTGAGAACTTGTAACTTATTATCAAAAGGCTGGTATTATAGTTTGATGTTTGAGCTAAGTGGCCTTCAAAACTCCAAATGACAAAATTGAGGTACTCCTGCTAATCCAGTTTCACGCATTACGGGTGCTTTAGCCACCTTATGAACTGAGACTACAACATAGAACAAATAGTTGGTTTTTTTTTTAAAATCAGTAGTTGAGTGTTGCTAGGACTTGTTTCTTGAAGTTATGGTCCAACTTCAGAAAACAAGAATTTGGTACTTATGACTGCTTATAATATTACTAGTACAATTTTTTTAGTGGATCAAGTCCAGACTGCTAATTAAGTGAGTTTTTATTCCAGTTCATTTTCATAAGGGCATGGCTTCACAGCTACAAATAAGTTATTCCCCTTCTTTATGGTTTAGCATCATAATGTTCTTTACTTCAACAGCTTAAATGACAGGTCTGATCTGAACTTTCACTAAATGTAAAGAACACAACTAGTACAACATTTGTAGCTTAGTGCTGATGCATGTGTAAATGTTATTATGAGCACTTGTTGGAGAGACTGATGAAGATAAAAAGAAACTTTATTCCATCTTGATTATGTGATTCTGTTTGATTCAATCCAAAATTTAAGATATTAGTCTGATAAAATTATTAATGAAATTACTTTACCTACAAAGTTGTGTAGTACCCTCTCTCCCTCTTAAAATGCTTGTTTGTTTCTTTTAGTTGTGATATATTGTCATTTGATAAATCAGATCTTTTAAACGCTTATATTTCACAAAGAGTTTTGGGATCCCTGCTTACTATTTGTATACACCTAATTGCTAATTTATTTTATTTTTAATAAAATGAATCGGAATGAAAGGAAGAGCAGAATGAATACAAAGGATAATCTAGCTGACCGCAACCAAATAGATTAGAACACAATTGCAAAAGACAAATAAACCACATTTCCCCCAACAAATACGAAATAACTCATTTTTTAACTTTTCTCATAATAATCTTGTTGTGGACTACCAAAATTGGGATAATGAGTAATCGAAGAGAATTGAAGAATTAACACAGCCGCCTGTTCACCCATTTAAACTAGAAATAGCTGGCGGATGAGTAGTATATGTATAATATATGTATACAGATTATGAAAAGTATACAGTAAATCCAACCGGTTATTTAGTATAACAGAAAAGACCATTATCGAAGTTCTAATTTGTTAGTTAAACAAATTTGGTTTCTTAAAACTTTGGAAAGTGGTCAAGTTCAAAAAAAACTTTGGAAAGTGGTATAATAATGTTACTAAAAGAACAATATATGTCATTCTTGGTATATCACAAACTAGGACATATGTTCAGCATGGAGGGAGTACCTTTTATTCATTGGAATAGTTGGTTTGCTTCTTTTTATAAGGTATCAATTCCTACTTCCAGCGAAATCTGTCCTTTCTGTTTTTGTTTTTCCTGGGTTTTAGTTGGGGTTGGGCAGAGAATTGAGCATTCTACTTCGCTAGATATTACTAACTGGCAACTTGATAGGTTACGATGCTTATGTTCCTGTATTTTGTTTAACGCTCAAGCTAAGCAAATCACTTCTGATTTCGACCATATCTATATTAGTGAGATATGCATATCAATCTCACAGTTACTATTCTCAAAATATAGAATGGCATAGCAATCTCAAATAATGTCCTCAAAACAAAAGTGTTTTTGTTTATCCAACTTTCTGGACATTTTCTGAGGTTGAGGATGTTGCAGGCAATTGAAAGGGAAAGAAGGTGAAACGATTGAATGAGGTTAAAACCTTTCAAGTTTTGTCAAAGTCAAACTCAAAATTTTCAAGTTTTTAACCTTAAAAATGAGTAGGGTAGGATGATGAAGCATACTGCATGACCTTGTTGGGTTTTCTTTTCTTTTGTCTCCATTCCGAATGCTCATCATATTCGGATCTTCAAGACATTCTTGACAAGAACGTTTAATGTCCTATGGATAATGACCTGTGAATGGATCTTTGAGCCACCATACACTGTTACATTCTGAATTGAAATGTTAATCCAGTGTTTCCACAAGGCCTTGTAATAACGGGAATCATAGAATGATAAACATTATAGTGGAGATTTCATTATGGCAGCAAAAGTCCTCCTACAAGGGGGTTGCTTGCCTAGCTCACAAAGGCATCCTTTGCCAACATTTACAAATTATTGGGCCTAGCGTTAACTCAGTTATTCACTATAGTAGAAACAATTACTAAAAGCATTTAACACCTTACACTCATATAACGATCAAATCATCCATATGTTAAAAGGAAAAACCGAGGGAGAATTAACCCTTCGGGGTGGCCCAGTGGTTTAGGCTTGGGATTTATATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCTTTGCCTCTGGGTCGAGCTCGTTGCATCAGGCTTGCCTAGTGCAGGTTACGTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTCAAAAAAAAAAAAAACCAAGGGAGAATTTATCTAGATGAAGACATTTTATTATACCATGATTTTTGTAAAGGTTATAAGATGTTTTTCAACTACTACATAGCCACTTTATACAAGAGATAGAAAATTAGTACTTCACTTATTGAATATATATAGTACAAGTGGAATTCAAATAACATGAATAGTAGTCTTATACACATAAAGGACATAAAAACTCAATGCTTGAAAATACAGTGAGGAATCTCTGATATTGTAGAGACTTAATCGGTAATGGGCAAGACATAGGAAAAATAGGGATTGTTATATGAACTGGAGAACAAATAATACGATAGAGTTATTAAGCATGTCAAACAAGACATGTGATAATTGGATGTTATGGCAAAAGGACCCTTTAATAATGATCTGCATGGCACGAGATAGTGGAATGTTATATCAAGAGAGGGGGTAATGGCTGGAATTGAACCCCCATCAACAGTGGTTTGCATGGCATGGGATGATGGAGTTTTTATGGCAAGACATGGCATAATTGGTTTTTATGGTAAGGGGCCCATAAATAATGTTTTGCATGCATGCGATAGTGAGATTTTATGGCAAGGGGCCCTTCTTCTAGGGCATGTTCTCATCTTCAGAATGCTAAATTCCGTTTTTTTTTTTATATTTTATGTCCATTTTTTGTTGTTGGTGAAGTAGATATTTTACTTTGATGCCTTTGCACTTTTTCAATGGTCTCCTATTGTTTTCTGTGTATCAGCAATAATCTTGTACACTAAATTGCCGAACTATTTAGAGTTATTGATGTTATAGCCCAAATGATTATGTAGCTGTTCATGCATTTATGGTGGAAGCATGTACATTATCTCCTCTTGCAGGTAGAGATTAGGCCAGTTGTAATTTGGCATGCTTTTTCTGCACTGAAACAGTGATTAGTTTGAACTTTGGATGTACTCAATCAAAGATGCCTATTGGCCAAATATTAAAATATGTGAAAGAAAAGAAAATGTCTATTTCTTGTCTCCATGGCGGGAGATTAGTTAAGCTAGCTGTGTTTAGCGAGTTCTCTTTTTTTTTTTTTTTACAGTACAACAACTATAACTTAGTCCCTAACAAGTTGGGGTCGGCTATATGAATTTCCACTTCTTCATTTAAGCTCATTTCTTTTATCCAGCTGACTTCTCTGCTTTTGCATGTCAAGGTTCTTGTTGTTCATATGTTGTTTAGGAGTTTGATTGTTTTGGCTGTTGGATTTGTACTGCAGGCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACTGTAAGTTCCACTCTGATATGCCTCCTGCCTGATATGTGAATACTTCTGGTATTGTTTCTCATGTTGGTTCAACTCTTGTCTAGGGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAGGTAGAGTGATGGTTCATGTTTGCTATTGATCTTTGGCATGCTAGTTCTTTTTCTCAAAATAAATGCTTAGGATTTTGCACAATTATCCAATTTGTTGATGCTTAAGCTATTAAATGTTAAAAATTTCAGGTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAATGACTTCTTTCCAGTCTAATGCTTCAATTTGCCATTTAATATGATGTTCCACCAGAAAAACAC</genome_strand>
        <mrna_strand>GAAGCAGCAGCTGGNTCTGCTCCTATTGGTGCTTTTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAAGTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAG...........................................................................................................................................................................................................................................................................................GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCGGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG..............................................................................GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACT...................................................................................GGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG.................................................................................................................................GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATATTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTAAAAAA.......................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="59187" stop="60444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59487" g_stop="60144" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59487" e_stop="60144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGTTTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAAT-GGGCGAGTACCTGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAATGTAATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTAAAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTACCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="59256" stop="60611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59556" g_stop="60312" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59556" e_stop="60312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGTTTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAAT-GGGCGAGTACCTGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAATGTAATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTAAAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTACCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGACGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATA</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340257" ref_strand="+" ref_description="SGN-U340257        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-113, score=411)">
      <seq>tttgaggcctggtggtgaatttcagggattacccattccggagtggaagtgggaccgcattactatggattttgtggctggtctaccgaggacttctagaggatttgatagtatttgggtcatcgttgatcgattgaccaagtcagcacatttccttttcgttcaatcttcatttagtgccgagaggttggctcgtatctacattcgggaggtggttcgacttcatggggtgccagtttctattatatcagatcggggttctcagttcacgtctagcttttggaggacctttcaggatgagttgggcacccaggttgacctgagcacagctttccacccgcagactgatggtcagtcagagcgcactattcaggtccttgaggacatgctacgggcttgtgttttggagtttggtggtcaatgggaccagttcttgcctttggcggaatttgcatataacaacagctacaattctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="67583" stop="68661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67883" g_stop="68361" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U340257" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67883" e_stop="68361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCCGAGTGGAAGTGGGATCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTTGAGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTTAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGTGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCAGAATTTGCATATAACAACAGCTACCATTCTAGCA</genome_strand>
        <mrna_strand>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTTTCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCAGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGCGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCGGAATTTGCATATAACAACAGCTACAATTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346572" ref_strand="+" ref_description="SGN-U346572        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-31, score=89.7)">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="76956" stop="78118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77163" g_stop="77818" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U346572" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77163" e_stop="77818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAATCAGGTTCTTACTTATCTTAGTGGGCTATCTGATTAGGGCCATACACCTCCAGTGTTTTCTGCACCAGCTCCTCAGGTTCAAAGAGTAAAACATGCAGCTGCTGTGGCTCTCCGCATGGATGCATCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACAGGTGATCAACATGAACTTTTCATTAAGTTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAAGATGCCTATGATTTTATGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGGATGCCATAATATGGAAGCGGTCATATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTTTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGACCAAATTTCGTGCACTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGCTTTGTGAAAGGATTGAGATCAGATTTTCAGATCCCAGCCTTACACGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335074" ref_strand="+" ref_description="SGN-U335074        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttttttttttttaataaaaatcaataatcaacttgtataactcaaaacttatcattccccaaaatctggaagtcatcatcaccagagcctctatcataaaattactaaactaagagtattctaagaagctaaaaatacatacgaagctagtccatgccggaagttcaaggcatcaagacttgaagaagaagatccagtcaaacctagaagcattagctcaccctgaatttccgatgtagtaggactggcttgagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="43154" stop="85477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84497" g_stop="84544" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.646"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84545" i_stop="84956" i_length="412">
            <donor d_prob="0.000" d_score="0.65"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84957" g_stop="85177" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="265" r_length="219" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U335074" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84497" e_stop="84544"/>
          <exon e_start="84957" e_stop="85177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAATAATTAATAAAGAAAAATCTGAAAAAAGAAGATGTAAAAATGATTAAAGGTATAGGAATTTATATAAATGACATATTAAGTTGTTTAAAAAATTGAAGCAATATTATTAATTACAAGAAATTAATTAAAATATGTTTAATAATGTTATATGACTAATCTCATCCTTAAAGGGCATAAAATTTTAATTTTTGATAGGTATTTTGGTAAATCTAACTTTGTACAAAAAAAAAAGTTTTCTCATTTTTAATATAATATGATATATATTATAAGATAAATTTAATTAATTTACCAAGTATATAATTCATTGTTAGTTTGTGTCACGACACAAATCCGGGCTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATTCCCATAATCTGGAAGTCATACTCACAAGAACATCTATAATCAAATTACTAAACTAAGAGTATTCTAAGAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAGTTACT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTAATAAAAATC--AATAATCAACTTGTATAA............................................................................................................................................................................................................................................................................................................................................................................................................................CTCAA-AACTTATCAT-TCCCCAAAATCTGGAAGTCATCATCACCAGAGCCTCTATCATAAAATTACTAAACTAAGAGTATTCTAAGAAGCTAAAAATACATACGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCAAACCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAGGACTGGCTTGAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335319" ref_strand="+" ref_description="SGN-U335319        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="94102" stop="85780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93819" g_stop="93663" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93662" i_stop="86578" i_length="7085">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86577" g_stop="86080" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="660" r_length="503" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U335319" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93819" e_stop="93663"/>
          <exon e_start="86577" e_stop="86080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAGGCTGAGGCGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAGAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGCGACGACCTGCAGGACGGACCCTCGCAGGCACGACGGGCCGTCGCAGGTTGCGCAATCCCAGTCTGGGTCAGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGGAAAAACACAAAGCTTGGGAAATTTCTGGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATTGTAAACCTTCTATATGCTTAATTGTATGCTTGCATGAATGCTGTGATTATGTAATTGTGAATAAATAAGCATGATGAAGCTATTGAATCCCAAATCTTGAAAAGAAACCCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGCGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGACCGAGGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTAGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGTTTCTTATGTATATTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAAATTTTGGGAATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTATCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGGCTCGAGGAAGAACAGCGGCAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGAAAGAGGACGAGCGTCTAGCCCATCTGATACTAGGACAGTGACTCCACCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCAGCCACTATGGCTCCTCGTATGGAGGCCTCATTGGACCTAGGCACATTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGATTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAAGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGCAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTTTCCAAAACAGAGTTATAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATAGGGCCCATTGTTATGTTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTATTTGATCCCGGATCCACATTTTCTTATGTGTCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAAGAAAATGGTTAGAAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATAAACGAGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGTTGATTTGTCAAGGGATTCTCTTCTATTGCTTTCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTTTTGTGATGCATCCTATTCTGGTTTGGGCGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGGCAATTAAAGGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGCTGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGGTCTACACGGATCATCGTAGCCTTCAGTATGTCTTTACTCAGAAGGATTTGAGCTTGAGACAGAGGATATGGATGGAACTACTGAAGGACTACGACATCACTATTTTGTATCATCCGGGGAAGGCGAATGTTGTAGCAGATGCTTTAAGTAGAAAGGTGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTAGTGTGGAGTCAAGATCTTCTTTTCTTGACAAAATTAAGGGAAAACAGTTTGATAATGAGAAACTAAGGCGAATCCAAGATAAAGTATTATGAGGGGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAAGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGTGCAACCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATGTTGTTGAGTTTATTGCGAAGTGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAATGGGAGAGGATCGCAATGGACTTCGTGGTTGGTCTTCCAAAAACGATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAGTCTGCTCATTTTATTCCGGTTAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCACCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCTCAGACCGATGGTCAGTCTGAGAGAACGATTCAAGTGTTGGAAGATATGCTTCGTGCATGTGTGATAGAGTTTGGTGGCCATTGGGATAGCTTCTTACCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGGCTCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCATTTGAGGTTAGGCCTAGGGGTACTGACCTTTTGAGGGATTCGATAGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCACAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAGCTAAGTCCAAGGTACATTGGTCCCTTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGACGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGAAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCGGGAAAAATACCCACATCTGTTTACAGATTCAAGTACTCCTTTTCGCTCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTTAAAAAAAAACAGGCTGAGGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTTGTTTCAGAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGTGACGACCTGCAGGACGGACCCTCGCAGGCACGACGGACCGTCGCAGGTTGCG-CAATCCCAGTCTGGGTCGGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGG-AAAAACACAAAGCTTGGGAAATTGCTGGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACGAGAGGAAAAAACACAAAGCTTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="87122" stop="87899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87422" g_stop="87598" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87422" e_stop="87598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="88603" stop="89915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88903" g_stop="89615" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88903" e_stop="89615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCAACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="91220" stop="3003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90920" g_stop="90748" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90747" i_stop="90004" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90003" g_stop="89475" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90920" e_stop="90748"/>
          <exon e_start="90003" e_stop="89475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAAGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGCAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTTTCCAAAACAGAGTTATAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATAGGGCCCATTGTTATGTTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTATTTGATCCCGGATCCACATTTTCTTATGTGTCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAAGAAAATGGTTAGAAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACC-GGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89596" stop="90526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89896" g_stop="90226" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89896" e_stop="90226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89803" stop="90961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90103" g_stop="90661" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90103" e_stop="90661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="89807" stop="91843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90107" g_stop="91543" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90107" e_stop="91543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCTTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAATCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGTGGAGTCACTGTCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="+" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="60944" stop="91915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91182" g_stop="91614" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91182" e_stop="91614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGTGGAGTCACTGTCCTAGTATCAGATGGGCTAGACGCTCGTCCTCTTTCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="92207" stop="91321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91907" g_stop="91621" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91907" e_stop="91621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGAC-TTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="93375" stop="92109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93075" g_stop="92805" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92804" i_stop="92653" i_length="152">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92652" g_stop="92409" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="515" r_length="244" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93075" e_stop="92805"/>
          <exon e_start="92652" e_stop="92409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGCGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCAC........................................................................................................................................................GTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318739" ref_strand="+" ref_description="SGN-U318739        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT1G34420.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains leucine rich repeat (LRR) domains, Pfam:PF00560; contains protein kinase domain, Pfam:PF00069 | chr1:12584565-12587548 FORWARD | Aliases: F12K21.25, F12K21_25 (evalue: 7e-151, score=531) genbank/nr: gi|15218625|ref|NP_174702.1| leucine rich repeat protein kinase family [Arabidopsis thaliana] gi|8778255|gb|AAF79264.1| F12K21.25 [Arabidopsis thaliana] gi|12323858|gb|AAG51899.1| hypothetical protein; 24606-21623 [Arabidopsis thaliana](evalue: 5e-149, score=531)">
      <seq>tggacctcagttttaacacattaaatggtacaattcctcaggacctcttattcccaatgaacttgcagtttgttgatctcacttccaataagttagagggacctgttccttcaaacatgtcgataaatctgatcaggttgagattggggcaaaatgctttgagtgggtcatttccatctgcttcttttgaaagccttcaaagtttgacctacttggaactggacaacaaccagttaactggaccaattccttctgaattggggaagtgccaaaagttggcccttttgaacttagctcagaataagctgagtggtgtaattcctgttgagttgggtgatatgtctaatcttcaggtactgagtcttcaatccaataacctagttggagaaatcccaagtaatatctcacagttgaacagattgcagaaactcaatttcagctcgaattcgttgactggttccataccaagttcattatcaagtttgagaagtctcacaaacttgaatttgcaggggaataaactaagcggtcgaattccggttgacattagtaacttaaatgtgctgttagaactccaacttggagggaaccaactcagtgggcctattcctgatatgccattgagtttacagattgctttgaatctgagtcacaatctttttcaaggacctataccaagtagtttttctagattgacttcattggaagttttggatctctcttacaacaggttctcgggtcagattccagagtacctggccggaatgaaaggcttgactaggttggtgctttcaaacaatcaactgtctggagttgttccaaagtttggaagttttgtcattgttgatacagatggaaatggggttctgatctatccttcaccagttgctccaccacaagctgctgcaaaaaagagaaaatcaatagttgttgcagttgttgtcccaattgcaggtgtagcaacaattgccattttcgtggtgattgctatttcaatctctagaagatattacaggatcaatgatgaacattttcactcaggagtacaaatttctcaatcccctgtcgttcagggaaaggttttaactgcaaacagcattcacaagtcaaatatagacttcacaaaggccatggtagcagtgtctgagccctcaaatgttgtgttcaagacaagattttcaacctactataaagctgttatgccgtcgggtacaacctattttgtcaagaagcttaattggagtgacaaaatatttcagttgggaagccatgaactatttggggaagagttaagaaatattggaaagctgaataattcgaatgtcatgattccactaggctatcttttggctgctgatagtgcttacctcttctacgaatttgcccccattggctcgttatatgatgttcttcgtggtagcttgggctactcgttagattgggcaagtcgctacagcatagctattggagtagctcagggtttagcttttcttcatggatgtgacaagggtccaatcctcctcctcgacctttccagcaagagcattctcttgaagtcccagaatgaggctcagataggagacattgaactctacaaggtgatggatccttcgaagagcacaggcagcttttctgctgttgctggttctgtcggttatattcctccagaatatgcatacacaatgagagtcacaatggctggaaatgtatatagctttggggtcgttctgctggaattgttgacaggaaggcctgcagttagtcagggaaccgagttagccaagtcagtgctgagcaactctgagaagcacagcaagtgggatcacattctggattctagcatttctaaggcatcgctcaacgttaggagccagatgttagcagtcctcaaattggctctagcttgtgtcagtgtatcaccagaaggccggccaaagatgaagagtgtgcttcgagtgcttctccatgcaaggtaatcgtacgtcaaaggagaaagtcaaggagaaaacagccaagattgttttcttctttttcttttggggaggagctgtaagtggtgaaggtgttgtgatctatgcagaatatgccagttttgtcagtttatacatattatattaatgtaaacatatagatatatgatgatagtagctacataactttgaatatgatgttagttctcagtgtaacatagtccatttttcttgttcatgtgtaatcatatatatatcatatcatattatattataagtgggtagcctctacttcaaaagttgaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="97165" stop="93963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96865" g_stop="95198" g_length="1668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1668" r_length="1668" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94878" g_stop="94264" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1669" r_stop="2283" r_length="615" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U318739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2283</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96865" e_stop="95198"/>
          <exon e_start="94878" e_stop="94264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAGGTAATGAACTATAACTTGGTTAATGGTTAAATTTTAAGATCCCTCAACATTGATTTGTACTCCTTATTGGTAATGTAACGTTTCCTGTCCTAACCGCCGTACCATGCTTTTAACTCATCTTTTTGTGTTTAATCTTCATATAGTTATTGTTGTTTTCAAACTTAAGACTTCATTATAAACGGTGTTGAACTGTCTTTCGATATCTAAAGTGAAACAGTCTGTCAGTATAGCTTCGAGGGGGAGGGGTGGATTAAAATGTAACATGAGAAGCCTCAAGTTGAGCATATATTTAGTAATGCATTTCCTTTTTGTGTTACAGAATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTACAAAA</genome_strand>
        <mrna_strand>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG...............................................................................................................................................................................................................................................................................................................................AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340327" ref_strand="+" ref_description="SGN-U340327        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G34420.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains leucine rich repeat (LRR) domains, Pfam:PF00560; contains protein kinase domain, Pfam:PF00069 | chr1:12584565-12587548 FORWARD | Aliases: F12K21.25, F12K21_25 (evalue: 3e-16, score=82.4) genbank/nr: gi|15218625|ref|NP_174702.1| leucine rich repeat protein kinase family [Arabidopsis thaliana] gi|8778255|gb|AAF79264.1| F12K21.25 [Arabidopsis thaliana] gi|12323858|gb|AAG51899.1| hypothetical protein; 24606-21623 [Arabidopsis thaliana](evalue: 2e-14, score=82.4)">
      <seq>caaaaacaaataaaaaatgaccttaagggatgctcccaatatagttattactatattcttgtctttttctcttcaaattgtgttaatccactggaccaaccttacaaatattgagcccttaaccgtgaaagagctcattaataaatatactggtgatccttttgtatagaatggaactgataaagcttcaaccccatgttcttggaaaggggtttcatgtaattctgataattcttcccttaccaaagttaccttttcattgttctctatttctagctctgaacttttgccttttatctatcaaattggcactttggagtctcttgatgtttccctgaactttttgagctctatcccaaatgagttcatcactgtttgtgggggaattagtgggttgaaattgatgaactttagtgggaatagattggagggttttttgcctactttcactggttttggaaagttggagtctttagacttttcttataataacttgaagggaaaagttgacttgcagttgaatggattgaattcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="98064" stop="96926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97764" g_stop="97226" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U340327" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97764" e_stop="97226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAATAAAAAATGACCTTAAGGTATGCTCCCAATATAGTTATTACTATATTCTTGTCTTTTTCTCTTCAAATTGTGTTTTCCCAATTGCCCACAAATCAAATTAATGTCATGAGAAGTGTCTATGATCTGTTTCAGAATGATACTGGTGATTCTTTTGTATGGAATGGAACTGATAAAGCTTCAACCCCATGTTCTTGGAAAGGGGTTTCATGTAATTCTGATAATTCTTCCCTTACCAAAGTTACCTTTTCATTGTTCTCTATTTCTAGCTCTGAATTCTTGCCTTTTATTTGTCAAATTGGTACTTTGGAGTCTCTTGATGTTTCCCTGAACTTTTTGAGCTCTATCCCAAATGAGTTCATCACTGTTTGTGGGGGAATTAGTGGGTTGAAATTGTTGAACTTTAGTGGGAATAGATTGGAGGGTTTTTTGCCTACTTTCACTGGTTTTGGAAAGTTGGAGTCTTTAGACTTTTCTTATAATAGCTTGAAGGGAAAAGTTGACTTGCAGTTGAATGGATTGAATTCACTCA</genome_strand>
        <mrna_strand>CAAAAACAAATAAAAAATGACCTTAAGGGATGCTCCCAATATAGTTATTACTATATTCTTGTCTTTTTCTCTTCAAATTGTGTTAATCCACTGGACCAACCTTACAAATATTGAGCCCTTAACCGTGAAAGAGCTCATTAATAAATATACTGGTGATCCTTTTGTATAGAATGGAACTGATAAAGCTTCAACCCCATGTTCTTGGAAAGGGGTTTCATGTAATTCTGATAATTCTTCCCTTACCAAAGTTACCTTTTCATTGTTCTCTATTTCTAGCTCTGAACTTTTGCCTTTTATCTATCAAATTGGCACTTTGGAGTCTCTTGATGTTTCCCTGAACTTTTTGAGCTCTATCCCAAATGAGTTCATCACTGTTTGTGGGGGAATTAGTGGGTTGAAATTGATGAACTTTAGTGGGAATAGATTGGAGGGTTTTTTGCCTACTTTCACTGGTTTTGGAAAGTTGGAGTCTTTAGACTTTTCTTATAATAACTTGAAGGGAAAAGTTGACTTGCAGTTGAATGGATTGAATTCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315480" ref_strand="+" ref_description="SGN-U315480        Tomato 200607 #1 [31 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP9 signalosome subunit 5B / CSN subunit 5B (CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1), COP9 complex subunit CSN5-1; identical to Arabidopsis homologs of a c-Jun coactivator AJH1 GI:3641314 from (Arabidopsis thaliana); identical to cDNA CSN complex subunit 5B (CSN5B) GI:18056662; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family | chr1:8109703-8112040 REVERSE | Aliases: F19G10.12, F19G10_12(evalue: 3e-172, score=602) genbank/nr: gi|12002865|gb|AAG43411.1| JAB [Lycopersicon esculentum](evalue: 0, score=739)">
      <seq>tatattcttaattctttaaattattaattttgtgatttttcacttgtataaaatcagagaagagagctctgcaattgcttcttccccgaagttcagttcccaatggacgctctgaattcttacgcatcgtcggcggcgatggcgcaacaaacatgggagttagaaaacaacatcgtgacgacggacgcgccatcggggtcggcaccggaaaactctgcgtcggatgcaatattccactatgacgatgcggcacagactaagttccagcgggagaagccgtggacgagtgaccctcactacttcaagcgcgtgaagatctctgctcttgctcttctaaagatggttgttcacgcgcgttctggaggtacaattgaggtaatgggactaatgcaaggtaagacggatggagatgctattattgttatggacgcttttgcccttccagttgaaggaactgaaactagggttaatgctcaagctgatgcgtatgaatacatggttgaatattcacagaccaacaagcaggctggtcggctggagaatgtggtcggatggtatcattctcatcctggctatggatgctggctctctggcattgatgtaactacacaaatgcttaaccagcagtatcaggagccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataagcctccagatgaccctatctcagagtaccagaccattcctttgaacaaaattgaagacttcggagtacattgcaagcagtattattcattggatattacctatttcaagtcctctctcgattgccatctcttggacctactatggaacaagtattgggtgaacacactttcttcttctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcaagctgaaaatcagctgtcccattcacgttttgggcacttagtggcagcccctcaaaggaagaaggaggaagaatctcagcttgctaagattacacgtgatagtgctaagattactgtcgagcaagttcatggcttaatgtcgcaggttattaaagacattcttttcaatagcgtttgtaagtcaggcaagtcgcagactgaaccctctgatccagagccgatggtcgaaacctgaatagtttcatcctattagtccagatttagatttgtctctaggtttctttttgcagttaactaaacatacagctttgagtctattatatgtaggtcccaaggggtgaaagtttaagatggccacccctgatataaattatcattgctgtttaatgttttgaagattttgccaaatctttcactagttcttttccttgtcttcttttcttttgttatttagagaagttctgtaaatcatgaaccatccttttatatgaatggtacaacctctatcttgtattagatcgacattttctattttagaaattattaatagattcagtaactttactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122757" stop="116807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122457" g_stop="121933" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="807" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="955" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120472" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1038" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117700" g_stop="117623" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1116" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117528" g_stop="117108" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1117" r_stop="1537" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1538" polyA_stop="1548"/>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U315480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1537</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122457" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120472"/>
          <exon e_start="117700" e_stop="117623"/>
          <exon e_start="117528" e_stop="117108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAGGTATTTTTTTGTTTTCTCTTGAGTCTTGACAATGCGTACTTTAACTTACAAGTCTTATCTCTTTGTTTGAGAATATTAGTTTGACCAATTGGAAAAAGAGAACATTAGTTTGACAGTTCTTAAGTATTGTGTTTGTTGAACCACTATCTTTGAATCTTTTTGACATGTGATTCCTATTTAGACATTATGAACCTAGGCAATATTTTGTGCTCACAGAGTGGCTCTTTTTGGAAATTTGTAGCTTATAGCATACTAGGCCTCTTGATCATATTTTGCTGGGCTATGAAACTGCTTACAATTAAAATGTGCAAGGATAAACAAAGGGAACTAAATATAAATTTGCCTTCAATTGTACATGTTGATTTTTCTCCTCTTTTAAATGGTGAGAGTTTGCTAAACCGTATATACTGGAACACCTAATTCGTGCTTATGAAGTTCAACTAGCAGAAAGTAATGCAATACAATAAGAAAATCGAGTTGATTATGGATTAGGTTCATACAACTCTCAGCAATAAGAAGATTGTATGAATGAAGCGTTCTCTTTCTACTTTAACAAAAAAGATTGAAAAAAGATATAGTGGACAGTGAAAAGTCTCATTCACATGTGAATGTGAAAAATAACACCCCAAATAAAAAAACTAGTTCATTATGATTATGTGCCAATATGATCCTATCTTACCTATGAATGGTTTGGTCCTTTATTATAGTAAACTGCGGATAAAAACTTCTGTCAATTATCAAGAGTGGTGAAAAATAATCACTTGCCAAATTTTGGATCTGTGAACCAGAACTAGGTGTAAAAGAGGGGACCTACCATCATTATTGAACTTCTTTGTTTAATACCAACAGGTGCCTGTGTTTTTGTCGTTACATATTAGGGGTTTGAGATTTTCTTTGGGGCGTAAGAAGTTGGAGCAGACACATATAAGTGATGAGAGAACAGTCAAAGGCAAATGAGTGGAAACAAAAACCCTAGGATTATGGTAGCAACTAACCTAGTTAAATTTTGAGGACAAACTTTGTAATTACTTATTTGGTAAACCAGTCTTATGCCTTTGGCACTGATTTTCAGTCTTCATGTGTTCTTTCCACTTCCCTTTGCTCATGCAATATTTATATAGAATAAAGTAGATCCCAAAAACAATTGAACCAACCATTTCTATTCCCCCCATTTCCAAAGTCTATTTTAGTAGGCATGTAACCATTTTCTTCAAAATAGTGGTGGTGGAAGTTACAGAATCCGAGAGACGTGAGAGGTTGGGTATAGTGGATGTCAGGAGTGCTAGAGGCAAGACAAAGAAGTGCAGGGGTAGGTGATTTCACTGGACATAGCACACTTCTGGCTTAATGTGGACCTTATCCTAGAAAGGAAAGTTAAGATGTTTATAATTAAGGTAGAAGGTAAGTAGTATTATAGCACCTTTAGGTGGGTGAGGCGGGGGGGCTAGTCCCCGTTTTTCCTACTAGCAATATTCTTGTTTAGTACTTGGGTAGTATCTTCTACTTCGTCCATTTGTTACATGTTACCTTTATTGGTGGACAAGATCAGGATGCACAAAGGCCCCGGTTAAGAAATGTGAGAGGTTTGATATAGATAGTGGGTACAAGAAGAGATAGAGTAGGCGAAAAAATTTATTGGGTAAAGGTGATTTAGAATGGACATGGCGCAACTTCCGTTTATCAAGGACATGATCTTAGATAGGGGATGGTAGAAGGTTGCAAATCAGGGTAGAAGAGTAGGCAATTGAACTTTGACTTGCTTTATGGCGGGTTTAGGCTTGGTGGGAGTTGGGAGCACTGTGTTTGTTGTAGTACTAGTCTTATACATGTATTTCCTTTTCAATTACTGCATTATTTAGTTGTTATTGTTTCTTTTCTCGGAATGCTTTGTACTACTTTTCTTATTAGGTGGCATGTTTTCTCCACTATCCATTTCTTTTCCGTAAATACTTTGATTTGTTACACTTGAGCCGAGGGTCTGTCGGAGACAATAGCTCTGCCTCCACGAGGGTAGGGATAGGGTTTGCATACACTCTGCCCTCCTTAGACCCTAGACCCTATTGGGTATGTTGTTATCTAGCATGTCTTGGTTTCTCGTTTTGGTTATTTTGTATCTTTGCTAGTGCACTTGTCATATTTCCCTTGCAAACGACTTCATTTTTCTTTTTTTGAGTTGATAGTCTATCGAAAACAACATCTCTACCCCACAAAGATAGGAGTAAGGTCTGCGTATATCCTACCCTTCCCAGATCCCACTTGTGGGATTATGTTAGTATGTTGTTGTTGGAGTTGCAGAATCCTTCGTGGTACACTCATGAAAAAAGTCAAAGATCCATTGCAGTGAGCAACAAGAATAGAATCACAAATGACTAGACAACACCATATTTTGTCTGGAAGTTTATAATCACAATTACTGTTATCTATTACTGTTTTAGGAGCCCTTGTAGAAAGGGATGAGAAGTACCAAGGTGGAGGCTTTTGGTTTCTTGTACTTCAATACCCTTTCCATGTACGTTTTGTGAAGCATAACATCAGTAATTCGCTCCAGTAGGTGATGATGTGCCATATTATTTCACTACACTAAATGTATTTGTGCTATCAGGCTTGATTAGGCAATAGTTACCTAGGTTTGACCTGCAACATCAGGCTACGTATTGAACGTTATCATATTTTTACTTCAATTTTAGTAGTCTTTTGCTTGCTTCCTTCCTTCAGTAAATTGCAAAATACAACATGCATGGTACTAAACGTGTTGGTCCTTTGACTTGCAGGAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAGGTATATGCTGTTGTATTCTTACATTAGTTACATATCATTCTTCGAATATCCAACAATGTTTTGACAGTTGGATGTATTTATTCTTGTTTTTCAGGTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACT</genome_strand>
        <mrna_strand>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG..............................................................................................GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-NhULIn/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315481" ref_strand="+" ref_description="SGN-U315481        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP9 signalosome subunit 5A / CSN subunit 5A (CSN5A) / c-JUN coactivator protein AJH2, putative (AJH2), COP9 complex subunit CSN5-2; identical to c-Jun coactivator protein AJH2 GI:3641312 from (Arabidopsis thaliana); identical to cDNA CSN complex subunit 5A (CSN5A) GI:18056660; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family | chr1:26856123-26858058 FORWARD | Aliases: F3I17.12, F3I17_12(evalue: 2e-144, score=508) genbank/nr: gi|12002865|gb|AAG43411.1| JAB [Lycopersicon esculentum](evalue: 7e-165, score=582)">
      <seq>ctgaagttacaatggactctctgaattcttacgcatcgtcggcggcgatggcgcagcaaacctgggagttagagaacaacatcgtaacaatcgacgcgccgtcggggtcgaaaccggaaaactccgcgtcggacgctatattccactacgacgatgcggcacagacgaagtttcagcgggagaagccgtgggcgagtgaccctcactacttcaagcgtgtgaagatctctgctcttgctcttctcaagatggttgttcacgcgcgttccggaggtacaattgaggtcatgggactcatgcagggtaagactgacggcgatgccatcattgtaatggacgcttttgccctccccgttgaaggcactgaaactagggttaatgctcaagctgatgcgtatgaatatatggtcgaatattcacagaccaacaagcaggctggtcgtttggaaaatgtggtcgggtggtaccattcccatcctggttatggatgctggctctctggcattgatgtatctacccaaatgctcaaccagcaatatcaggaaccctttcttgcagttgttattgatccaacaagaactgtttctgctggaaaagttgagattggtgcctttcgaacatatcctgaaggatataaacctccagatgaccccatctcggagtaccagaccattcctttgaacaaaatcgaagactttggagtacattgcaagcagtattattcattggatattacatattttaagtcttctctcgattgtcgtctcttggacctactatgggacaagtattgggtgaacacactttcatcatctcctttgcttggaaatggagactatgttgctggacagatatctgatcttgctgaaaagttggagcatgctgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0291F09-XJgPd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0291F09.1" temp_strand="-" temp_description="C04HBa0291F09.1  CU302231.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0291F09 sequenced_by:sanger upload_account_name:uk">
        <position start="122663" stop="120229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122367" g_stop="121933" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121217" g_stop="120936" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="716" r_length="282" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120823" g_stop="120676" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="864" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120554" g_stop="120529" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="890" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0291F09.1" gen_strand="-" ref_id="SGN-U315481" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0291F09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122367" e_stop="121933"/>
          <exon e_start="121217" e_stop="120936"/>
          <exon e_start="120823" e_stop="120676"/>
          <exon e_start="120554" e_stop="120529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAGGTTAATAATGCCTTTTTATCACTTTTTTTTTCTTCTTTTTGATGTTGTGGTGTTGATAATGGAGAAGGGTATACTAGTGCTAAACTAGTCAGTTTACAGAAACTTTTCGGATATAATAAGTATTGTAAATGGGTTCAAAAAGGGGCAGGGCGGTGAGTTGATAGAATTGATTGAGATTGAAGCTTTGTTCTTGTTGGCGTCCAGGCCAGTTTGCATTGACTAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTAATTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTACCTATGTAGATTTTTAGAATCATTAGCAAGAAGTCAATTCTTCCGGTTGATCTATTGCTTCATGTGTGTTTCCATAATCATAGACTTGGAGTCTCTATATGTATTGTACATATGTATGATTTCATTTTGAGCTGATTATTACTTTACCTGTACACATTGTTATATAGGATTTATGCATTATGTGTGGATTGGTTTTCTGAATTGGAGCGTGTTTGTCCTATAGTTTGTTCAGACCACTCTCTTACTAAGACTTTATGCTATAGGCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAGGTCAGCTTATTGGCATGAACGCATACACTCACACATTTATGTTAAATCTAGGACTTCCAACTTCAGGTTTACTCGTGACTGTTAAATCACCAACTTTTCTCTTAATTTGCAGTATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTGGTAATATCATTGTTGCCTACCTTTTCCACTTCCTTTTATCATCATAATGATTTGATCCTGAACATGAGTTTACACAATATTGAAACACCTCAAAATTAGTTGATCCCATTAACTCATGCAGCTGAAAAGTTGGAGCAAGCTGAAAAT</genome_strand>
        <mrna_strand>CTGAAGTT-ACAATGGACTCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTAACAATCGACGCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTGGGCGAGTGACCCTCACTACTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGGTCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCCATCATTGTAATGGACGCTTTTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATATATGGTCGAATATTCACAGACCAACAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGTTTGGAAAATGTGGTCGGGTGGTACCATTCCCATCCTGGTTATGGATGCTGGCTCTCTGGCATTGATGTATCTACCCAAATGCTCAACCAGCAATATCAGGAACCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAACCTCCAGATGACCCCATCTCGGAGTACCAGACCATTCCTTTGAACAAAATCGAAGACTTTGGAGTACATTGCAAGCAG................................................................................................................TATTATTCATTGGATATTACATATTTTAAGTCTTCTCTCGATTGTCGTCTCTTGGACCTACTATGGGACAAGTATTGGGTGAACACACTTTCATCATCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG.........................................................................................................................CTGAAAAGTTGGAGCATGCTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5374" PGL_stop="4821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5374" e_stop="4821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="5374" e_stop="4821" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5374" stop="4821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCGTCCCGTCTAGTACTAGGGAGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCCAGTATTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTGCAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTTATGAGCTACTACACAAGATGGATATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGAGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  R  P  V  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  A  S  S  I  F  C  T  S  T  S  G  S  R  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  C  R  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  R  F  S  G  *  L  L  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  E  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  V  P  S  S  T  R  E  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  A  G  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  Y  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   P  S  R  L  V  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  R  L  Q  Y  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  I  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5373" stop="4822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVPSSTREVTPPPTEEVVREGEEGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATVAPRMDASLEIGTFPRLTAGPVMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCYELLHKMDIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15376" PGL_stop="14789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15376" e_stop="14789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="15376" e_stop="14789" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15376" stop="14789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCGGGGAAGACCAATGTTGTGGCCGATGCTTTGAGAAGGAAGACTCATAGCATTGGGAGTCTTGTATCTCTTAGTGTTGAGGAGAGACCATTGGTTAGAGATGTTCAATTGTTAGCTAACAATCTTGTCCGATTGCAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGTAGATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGTTGTCCTTCATTCTGATGGTGTCTTGAGGATCGGAGGCAAGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTTTTGATATTCCATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTCTGTTTTGAGGTGTTTGACTTGCCAGGGGGTCAAGTGTGAGCACCAGCGGCCTAGGGGTGTATCTCAAAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  R  G  R  P  M  L  W  P  M  L  *  E  G  R  L  I  A  L  G  V  L  Y  L  L  V  L  R  R  D  H  W  L  E  M  F  N  C  *  L  T  I  L  S  D  C  R  S  Q  R  R  V  M  G  *  L  L  L  L  R  L  D  L  L  *  S  S  R  F  V  H  T  S  L  M  M  K  N  Y  V  S  F  E  T  K  Y  *  V  G  K  L  R  R  L  S  F  I  L  M  V  S  *  G  S  E  A  R  F  V  C  P  R  Q  A  I  *  L  D  *  S  L  R  R  P  I  V  F  D  I  P  S  I  R  E  R  R  R  C  I  M  I  *  V  S  I  T  G  G  V  G  *  R  E  I  L  Q  T  L  F  *  G  V  *  L  A  R  G  S  S  V  S  T  S  G  L  G  V  Y  L  K  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  G  E  D  Q  C  C  G  R  C  F  E  K  E  D  S  *  H  W  E  S  C  I  S  *  C  *  G  E  T  I  G  *  R  C  S  I  V  S  *  Q  S  C  P  I  A  D  L  R  G  E  *  W  D  D  C  F  Y  *  G  S  I  F  F  S  R  V  D  S  C  T  P  V  *  *  *  K  I  M  S  H  S  R  Q  S  I  E  W  G  S  *  G  G  C  P  S  F  *  W  C  L  E  D  R  R  Q  D  L  C  A  Q  D  R  R  F  D  *  I  D  P  *  G  G  P  L  F  L  I  F  H  P  S  G  S  G  E  D  V  S  *  S  E  S  A  L  L  V  V  W  D  E  E  R  Y  Y  R  L  C  F  E  V  F  D  L  P  G  G  Q  V  *  A  P  A  A  *  G  C  I  S  K  D  A  Y  S  Y  L  E  V  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  T  N  V  V  A  D  A  L  R  R  K  T  H  S  I  G  S  L  V  S  L  S  V  E  E  R  P  L  V  R  D  V  Q  L  L  A  N  N  L  V  R  L  Q  I  S  E  E  S  D  G  M  I  A  F  I  E  A  R  S  S  L  V  E  *  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  K  V  L  S  G  E  A  K  E  V  V  L  H  S  D  G  V  L  R  I  G  G  K  I  C  V  P  K  T  G  D  L  I  R  L  I  L  E  E  A  H  C  F  *  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  T  D  S  V  L  R  C  L  T  C  Q  G  V  K  C  E  H  Q  R  P  R  G  V  S  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15374" stop="15165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKTNVVADALRRKTHSIGSLVSLSVEERPLVRDVQLLANNLVRLQISEESDGMIAFIEARSSLVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14984" stop="14790"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSIHPGAAKMYHDLSQHYWWCGMKRDITDSVLRCLTCQGVKCEHQRPRGVSQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17919" PGL_stop="17492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17919" e_stop="17492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="17919" e_stop="17492" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17919" stop="17492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTGAGGTTTGAGAGTCTGAGACAGGATGGTTTATCAGTTACAGAGTATGAGGCGCGTTTTTGCCAGTTGTCTAGGCATGCGTTGTCCATTATTCCAAATAAGACAGAGAGGATCCACAGATTTGTGAGGGAATTGACTTTCTCTATTAGGTCAGCTGTGTTTCGGGCATTAGGGAGGGGGCTTCTTTCCAGTCCATTGTGAGCGCCGCCAAAGAGGCAGAATTGATGGAGAGAGAAGAGTTTGGGGACCCTAAAAGAGCCCGTATATCAGGTCAGTTTCATGGTGCCTCATCTGGAGGTAGGGGATCACAAAGAGTGAGTGGTTCTTTTCAGCAGCGGGGACCTATTCATGCATCTATGCCAACATTTGAGGGTGGACAGACATCTAGGGGTTCTTATAGCCCGGGTCAGGGCTCGTATGTTTCAC</gDNA_template>
            <first_frame> P  *  G  L  R  V  *  D  R  M  V  Y  Q  L  Q  S  M  R  R  V  F  A  S  C  L  G  M  R  C  P  L  F  Q  I  R  Q  R  G  S  T  D  L  *  G  N  *  L  S  L  L  G  Q  L  C  F  G  H  *  G  G  G  F  F  P  V  H  C  E  R  R  Q  R  G  R  I  D  G  E  R  R  V  W  G  P  *  K  S  P  Y  I  R  S  V  S  W  C  L  I  W  R  *  G  I  T  K  S  E  W  F  F  S  A  A  G  T  Y  S  C  I  Y  A  N  I  *  G  W  T  D  I  *  G  F  L  *  P  G  S  G  L  V  C  F   </first_frame>
            <second_frame>  L  E  V  *  E  S  E  T  G  W  F  I  S  Y  R  V  *  G  A  F  L  P  V  V  *  A  C  V  V  H  Y  S  K  *  D  R  E  D  P  Q  I  C  E  G  I  D  F  L  Y  *  V  S  C  V  S  G  I  R  E  G  A  S  F  Q  S  I  V  S  A  A  K  E  A  E  L  M  E  R  E  E  F  G  D  P  K  R  A  R  I  S  G  Q  F  H  G  A  S  S  G  G  R  G  S  Q  R  V  S  G  S  F  Q  Q  R  G  P  I  H  A  S  M  P  T  F  E  G  G  Q  T  S  R  G  S  Y  S  P  G  Q  G  S  Y  V  S  </second_frame>
            <third_frame>   L  R  F  E  S  L  R  Q  D  G  L  S  V  T  E  Y  E  A  R  F  C  Q  L  S  R  H  A  L  S  I  I  P  N  K  T  E  R  I  H  R  F  V  R  E  L  T  F  S  I  R  S  A  V  F  R  A  L  G  R  G  L  L  S  S  P  L  *  A  P  P  K  R  Q  N  *  W  R  E  K  S  L  G  T  L  K  E  P  V  Y  Q  V  S  F  M  V  P  H  L  E  V  G  D  H  K  E  *  V  V  L  F  S  S  G  D  L  F  M  H  L  C  Q  H  L  R  V  D  R  H  L  G  V  L  I  A  R  V  R  A  R  M  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17768" stop="17493"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSCVSGIREGASFQSIVSAAKEAELMEREEFGDPKRARISGQFHGASSGGRGSQRVSGSFQQRGPIHASMPTFEGGQTSRGSYSPGQGSYVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17917" stop="17717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRFESLRQDGLSVTEYEARFCQLSRHALSIIPNKTERIHRFVRELTFSIRSAVFRALGRGLLSSPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37524" PGL_stop="44549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37524" e_stop="38529"/>
            <exon e_start="38813" e_stop="39004"/>
            <exon e_start="39083" e_stop="39170"/>
            <exon e_start="43652" e_stop="43722"/>
            <exon e_start="43806" e_stop="43889"/>
            <exon e_start="44019" e_stop="44486"/>
            <exon e_start="44542" e_stop="44549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.954" e_score="0.996"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="37524" e_stop="38529" e_length="1006"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38530" i_stop="38812" i_length="283"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="38813" e_stop="39004" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39005" i_stop="39082" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39083" e_stop="39170" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39171" i_stop="43651" i_length="4481"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43652" e_stop="43722" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43723" i_stop="43805" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43806" e_stop="43889" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43890" i_stop="44018" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="44019" e_stop="44486" e_length="468"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="44487" i_stop="44541" i_length="55"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="44542" e_stop="44549" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="38409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38314" stop="38529"/>
              <exon start="38813" stop="39004"/>
              <exon start="39083" stop="39170"/>
              <exon start="43652" stop="43722"/>
              <exon start="43806" stop="43889"/>
              <exon start="44019" stop="44486"/>
              <exon start="44542" stop="44549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAATGTAGTTGAAGTCTCCGCCCTCATTCTCTTTCGATGCATTCGAGAAATCCATTTCTATAGAAAAACACACAAACCTACGCTTTTCTTTTCACCATTATTAAAATCATTCGATTTTTCTTGATTTGTTCGCAAAAATGTCTCATCTTCTTCAATCCACCTTCATCCCCACCACACCCACTACCCTCCGTCGCCGTTCTGTGTTTCCGACGACCCATTTACGGAAAACCCATGTTGTGGAATCGAAGATCCGTGAGATTTTCATGCCAGCACTTAGTTCTACTATGACTGAAGGAAAGATTATCAGTTGGATGAAAACTGAAGGTGATAAACTAGCTAAAGGTGAATCAGTTGTTGTTGTTGAATCGGATAAAGCTGATATGGATGTTGAATCTTTTTATGATGGGTATCTTGCTAGTATCATTGTACCTGAAGGTAGTTCTGCACCTGTTGGTTCTCCAATTGCTCTTCTTGCTGAATCTGAAGATGAAATTTCACTTGCTAAATCGAAAACTCCGACATCCACTTCTACTTCTAGTCCAGCTGCTACTGCTAGTGTAACTGAAGAGGTTTCAACGGTAGCAGCTGCGGTTGCGGTCCCGGTTACGGCTACGTCATCTTCTGATGCTGCGCCTGTGAAAATGGCGTCGTCGATTCACCCAGCATCAGAAGGGGGGAAGAGAGTGGTGGCTTCACCGTATGCTAAGAAATTGGCTAAGGAATTGGGGTTGGATTTGAGGGGAGTGGTGGGCAGCGGGCCTAATGGGAGGATTGTGGCAAAGGATGTTGAAGCAGCAGCTGGTTCTGCTCCTATTGGTGTTGCTGCAGCGGCGAAGCCAAGTGGTGGTGCACCAGCGGCCCCAGCAGTAGAATTGGGGACGACTGTGCCATTTACGACAATGCAGAGTGCGGTGAGTCGAAATATGGTGGAGAGTTTGGCAGTTCCAACTTTTAGAGTGGGGTATACTATTACTACTAATGCCCTTGATGCTCTCTACAAGAAG : GTCAAGTCGAAAGGAGTGACAATGACAGCATTGTTGGCAAAAGCCACAGCACTTGCATTGGTGCAACATCCTGTTGTGAACTCTAGTTGTAGAGATGGGAAGAGTTTCACATATAACAGTAGTATTAACATTGCTGTTGCAGTCGCCATAGATGGTGGCTTGATTACTCCTGTACTTCAGGATGCTGACAAG : GTTGATTTATACTCATTGTCAAGGAAATGGAAGGAGTTGGTTGATAAGGCCCGGGCTAAGCAACTTCAACCCCATGAATACACCACAG : GCACTTTTACCCTATCCAACCTTGGAATGTTTGGCGTTGACCGTTTTGATGCCATCTTACCACCAGGAACT : GGTGCAATTATGGCTGTTGGAGCATCTCAACCCACACTTGTTGGAACCAAAGATGGTCGAATTGGCATGAAAAACCAAATGCAG : GTCAATGTCACTGCTGATCATCGGGTAATATATGGTGCTGATTTGGCGGCTTTCCTGCAAACCTTAGCACAGATAATTGAGGATCCTAAAGACCTTACTCTTTAGGCTCTTGTCCTCAATTGTGGGAGATTAGATGTTTTGTAGTGTAATTTGCTCGAGTTTCAGCCAGGAGCTTCATGGAGTGAACAGAAACCATATGCTATAACATCTGAAGCATCATCTAAGTCACACTTCAGAAGATGAATGTTTATGGATGGTTAGGTCATTTTTTCGCGTGGTTAATCTTTTTTTTTTATTGGAGTGTAAACTCATGAGGACATTTTTCATGGCTGCCATAAAATTATGGCCTCAAGATGAGCTCTTTGTTGCTTCATCATTCAAATATTGTTGCAACTTTCTATTGATTCTATTTTTAAGGGTGTTCTGCAATTTCAGTTGTATCTGCAGTTCACTATTGCCATTACAAAA : AAAAACAC</gDNA_template>
            <first_frame> G  N  V  V  E  V  S  A  L  I  L  F  R  C  I  R  E  I  H  F  Y  R  K  T  H  K  P  T  L  F  F  S  P  L  L  K  S  F  D  F  S  *  F  V  R  K  N  V  S  S  S  S  I  H  L  H  P  H  H  T  H  Y  P  P  S  P  F  C  V  S  D  D  P  F  T  E  N  P  C  C  G  I  E  D  P  *  D  F  H  A  S  T  *  F  Y  Y  D  *  R  K  D  Y  Q  L  D  E  N  *  R  *  *  T  S  *  R  *  I  S  C  C  C  *  I  G  *  S  *  Y  G  C  *  I  F  L  *  W  V  S  C  *  Y  H  C  T  *  R  *  F  C  T  C  W  F  S  N  C  S  S  C  *  I  *  R  *  N  F  T  C  *  I  E  N  S  D  I  H  F  Y  F  *  S  S  C  Y  C  *  C  N  *  R  G  F  N  G  S  S  C  G  C  G  P  G  Y  G  Y  V  I  F  *  C  C  A  C  E  N  G  V  V  D  S  P  S  I  R  R  G  E  E  S  G  G  F  T  V  C  *  E  I  G  *  G  I  G  V  G  F  E  G  S  G  G  Q  R  A  *  W  E  D  C  G  K  G  C  *  S  S  S  W  F  C  S  Y  W  C  C  C  S  G  E  A  K  W  W  C  T  S  G  P  S  S  R  I  G  D  D  C  A  I  Y  D  N  A  E  C  G  E  S  K  Y  G  G  E  F  G  S  S  N  F  *  S  G  V  Y  Y  Y  Y  *  C  P  *  C  S  L  Q  E   : G  Q  V  E  R  S  D  N  D  S  I  V  G  K  S  H  S  T  C  I  G  A  T  S  C  C  E  L  *  L  *  R  W  E  E  F  H  I  *  Q  *  Y  *  H  C  C  C  S  R  H  R  W  W  L  D  Y  S  C  T  S  G  C  *  Q   : G  *  F  I  L  I  V  K  E  M  E  G  V  G  *  *  G  P  G  *  A  T  S  T  P  *  I  H  H  R :   H  F  Y  P  I  Q  P  W  N  V  W  R  *  P  F  *  C  H  L  T  T  R  N   : W  C  N  Y  G  C  W  S  I  S  T  H  T  C  W  N  Q  R  W  S  N  W  H  E  K  P  N  A   : G  Q  C  H  C  *  S  S  G  N  I  W  C  *  F  G  G  F  P  A  N  L  S  T  D  N  *  G  S  *  R  P  Y  S  L  G  S  C  P  Q  L  W  E  I  R  C  F  V  V  *  F  A  R  V  S  A  R  S  F  M  E  *  T  E  T  I  C  Y  N  I  *  S  I  I  *  V  T  L  Q  K  M  N  V  Y  G  W  L  G  H  F  F  A  W  L  I  F  F  F  Y  W  S  V  N  S  *  G  H  F  S  W  L  P  *  N  Y  G  L  K  M  S  S  L  L  L  H  H  S  N  I  V  A  T  F  Y  *  F  Y  F  *  G  C  S  A  I  S  V  V  S  A  V  H  Y  C  H  Y  K   : K  K  H </first_frame>
            <second_frame>  V  M  *  L  K  S  P  P  S  F  S  F  D  A  F  E  K  S  I  S  I  E  K  H  T  N  L  R  F  S  F  H  H  Y  *  N  H  S  I  F  L  D  L  F  A  K  M  S  H  L  L  Q  S  T  F  I  P  T  T  P  T  T  L  R  R  R  S  V  F  P  T  T  H  L  R  K  T  H  V  V  E  S  K  I  R  E  I  F  M  P  A  L  S  S  T  M  T  E  G  K  I  I  S  W  M  K  T  E  G  D  K  L  A  K  G  E  S  V  V  V  V  E  S  D  K  A  D  M  D  V  E  S  F  Y  D  G  Y  L  A  S  I  I  V  P  E  G  S  S  A  P  V  G  S  P  I  A  L  L  A  E  S  E  D  E  I  S  L  A  K  S  K  T  P  T  S  T  S  T  S  S  P  A  A  T  A  S  V  T  E  E  V  S  T  V  A  A  A  V  A  V  P  V  T  A  T  S  S  S  D  A  A  P  V  K  M  A  S  S  I  H  P  A  S  E  G  G  K  R  V  V  A  S  P  Y  A  K  K  L  A  K  E  L  G  L  D  L  R  G  V  V  G  S  G  P  N  G  R  I  V  A  K  D  V  E  A  A  A  G  S  A  P  I  G  V  A  A  A  A  K  P  S  G  G  A  P  A  A  P  A  V  E  L  G  T  T  V  P  F  T  T  M  Q  S  A  V  S  R  N  M  V  E  S  L  A  V  P  T  F  R  V  G  Y  T  I  T  T  N  A  L  D  A  L  Y  K  K  :  V  K  S  K  G  V  T  M  T  A  L  L  A  K  A  T  A  L  A  L  V  Q  H  P  V  V  N  S  S  C  R  D  G  K  S  F  T  Y  N  S  S  I  N  I  A  V  A  V  A  I  D  G  G  L  I  T  P  V  L  Q  D  A  D  K  :  V  D  L  Y  S  L  S  R  K  W  K  E  L  V  D  K  A  R  A  K  Q  L  Q  P  H  E  Y  T  T   : G  T  F  T  L  S  N  L  G  M  F  G  V  D  R  F  D  A  I  L  P  P  G  T  :  G  A  I  M  A  V  G  A  S  Q  P  T  L  V  G  T  K  D  G  R  I  G  M  K  N  Q  M  Q  :  V  N  V  T  A  D  H  R  V  I  Y  G  A  D  L  A  A  F  L  Q  T  L  A  Q  I  I  E  D  P  K  D  L  T  L  *  A  L  V  L  N  C  G  R  L  D  V  L  *  C  N  L  L  E  F  Q  P  G  A  S  W  S  E  Q  K  P  Y  A  I  T  S  E  A  S  S  K  S  H  F  R  R  *  M  F  M  D  G  *  V  I  F  S  R  G  *  S  F  F  F  I  G  V  *  T  H  E  D  I  F  H  G  C  H  K  I  M  A  S  R  *  A  L  C  C  F  I  I  Q  I  L  L  Q  L  S  I  D  S  I  F  K  G  V  L  Q  F  Q  L  Y  L  Q  F  T  I  A  I  T  K  :  K  N   </second_frame>
            <third_frame>   *  C  S  *  S  L  R  P  H  S  L  S  M  H  S  R  N  P  F  L  *  K  N  T  Q  T  Y  A  F  L  F  T  I  I  K  I  I  R  F  F  L  I  C  S  Q  K  C  L  I  F  F  N  P  P  S  S  P  P  H  P  L  P  S  V  A  V  L  C  F  R  R  P  I  Y  G  K  P  M  L  W  N  R  R  S  V  R  F  S  C  Q  H  L  V  L  L  *  L  K  E  R  L  S  V  G  *  K  L  K  V  I  N  *  L  K  V  N  Q  L  L  L  L  N  R  I  K  L  I  W  M  L  N  L  F  M  M  G  I  L  L  V  S  L  Y  L  K  V  V  L  H  L  L  V  L  Q  L  L  F  L  L  N  L  K  M  K  F  H  L  L  N  R  K  L  R  H  P  L  L  L  L  V  Q  L  L  L  L  V  *  L  K  R  F  Q  R  *  Q  L  R  L  R  S  R  L  R  L  R  H  L  L  M  L  R  L  *  K  W  R  R  R  F  T  Q  H  Q  K  G  G  R  E  W  W  L  H  R  M  L  R  N  W  L  R  N  W  G  W  I  *  G  E  W  W  A  A  G  L  M  G  G  L  W  Q  R  M  L  K  Q  Q  L  V  L  L  L  L  V  L  L  Q  R  R  S  Q  V  V  V  H  Q  R  P  Q  Q  *  N  W  G  R  L  C  H  L  R  Q  C  R  V  R  *  V  E  I  W  W  R  V  W  Q  F  Q  L  L  E  W  G  I  L  L  L  L  M  P  L  M  L  S  T  R  R :   S  S  R  K  E  *  Q  *  Q  H  C  W  Q  K  P  Q  H  L  H  W  C  N  I  L  L  *  T  L  V  V  E  M  G  R  V  S  H  I  T  V  V  L  T  L  L  L  Q  S  P  *  M  V  A  *  L  L  L  Y  F  R  M  L  T  R :   L  I  Y  T  H  C  Q  G  N  G  R  S  W  L  I  R  P  G  L  S  N  F  N  P  M  N  T  P  Q  :  A  L  L  P  Y  P  T  L  E  C  L  A  L  T  V  L  M  P  S  Y  H  Q  E  L :   V  Q  L  W  L  L  E  H  L  N  P  H  L  L  E  P  K  M  V  E  L  A  *  K  T  K  C  R :   S  M  S  L  L  I  I  G  *  Y  M  V  L  I  W  R  L  S  C  K  P  *  H  R  *  L  R  I  L  K  T  L  L  F  R  L  L  S  S  I  V  G  D  *  M  F  C  S  V  I  C  S  S  F  S  Q  E  L  H  G  V  N  R  N  H  M  L  *  H  L  K  H  H  L  S  H  T  S  E  D  E  C  L  W  M  V  R  S  F  F  R  V  V  N  L  F  F  L  L  E  C  K  L  M  R  T  F  F  M  A  A  I  K  L  W  P  Q  D  E  L  F  V  A  S  S  F  K  Y  C  C  N  F  L  L  I  L  F  L  R  V  F  C  N  F  S  C  I  C  S  S  L  L  P  L  Q  K :   K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37630" stop="38529"/>
                    <exon start="38813" stop="39004"/>
                    <exon start="39083" stop="39170"/>
                    <exon start="43652" stop="43722"/>
                    <exon start="43806" stop="43889"/>
                    <exon start="44019" stop="44123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHSIFLDLFAKMSHLLQSTFIPTTPTTLRRRSVFPTTHLRKTHVVESKIREIFMPALSSTMTEGKIISWMKTEGDKLAKGESVVVVESDKADMDVESFYDGYLASIIVPEGSSAPVGSPIALLAESEDEISLAKSKTPTSTSTSSPAATASVTEEVSTVAAAVAVPVTATSSSDAAPVKMASSIHPASEGGKRVVASPYAKKLAKELGLDLRGVVGSGPNGRIVAKDVEAAAGSAPIGVAAAAKPSGGAPAAPAVELGTTVPFTTMQSAVSRNMVESLAVPTFRVGYTITTNALDALYKKVKSKGVTMTALLAKATALALVQHPVVNSSCRDGKSFTYNSSINIAVAVAIDGGLITPVLQDADKVDLYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASQPTLVGTKDGRIGMKNQMQVNVTADHRVIYGADLAAFLQTLAQIIEDPKDLTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44224" stop="44486"/>
                    <exon start="44542" stop="44548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKHHLSHTSEDECLWMVRSFFRVVNLFFLLECKLMRTFFMAAIKLWPQDELFVASSFKYCCNFLLILFLRVFCNFSCICSSLLPLQKKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59487" PGL_stop="60312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59487" e_stop="60312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="59487" e_stop="60312" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59487" stop="60144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59556" stop="60312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGTTTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAATGGGCGAGTACCTGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATTTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAATGTAATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTAAAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTACCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCAGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCACTAGCAAATGAGGACGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATA</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  V  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  E  Y  L  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  N  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  *  N  P  R  S  Q  I  A  E  K  A  K  S  Y  L  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  Y  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  T  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  F  L  T  L  L  T  P  Q  E  P  F  Y  K  G  V  *  K  W  A  S  T  W  F  K  V  N  T  E  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  P  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  N  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  Q  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  K  I  Q  D  R  K  L  R  R  K  P  S  H  T  *  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  T  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  Q  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  T  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I </second_frame>
            <third_frame>   N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  R  S  H  S  I  R  G  Y  R  N  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  F  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  M  *  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  R  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  K  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  R  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  D  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="67883" PGL_stop="68361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67883" e_stop="68361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="67883" e_stop="68361" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67883" stop="68361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCCGAGTGGAAGTGGGATCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTTGAGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTTAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGTGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCAGAATTTGCATATAACAACAGCTACCATTCTAGCA</gDNA_template>
            <first_frame> F  E  A  W  W  *  I  S  G  I  T  H  S  R  V  E  V  G  S  H  Y  Y  G  F  C  G  W  S  T  E  D  F  *  R  I  *  *  Y  L  G  H  R  *  S  I  D  Q  V  S  T  F  P  S  R  S  I  F  I  *  C  R  E  V  G  S  Y  L  H  L  R  G  G  S  T  S  W  G  A  S  F  Y  Y  I  R  S  G  F  L  V  H  V  *  L  L  E  D  L  S  G  *  V  G  H  P  G  *  P  E  H  S  F  P  P  A  D  *  W  S  V  R  V  H  Y  S  G  P  *  G  H  A  T  G  L  C  F  G  V  W  W  S  M  G  P  V  L  A  F  G  R  I  C  I  *  Q  Q  L  P  F  *   </first_frame>
            <second_frame>  L  R  P  G  G  E  F  Q  G  L  P  I  P  E  W  K  W  D  R  I  T  M  D  F  V  A  G  L  P  R  T  S  R  G  F  D  S  I  W  V  I  V  D  R  L  T  K  S  A  H  F  L  P  V  Q  S  S  F  S  A  E  R  L  A  R  I  Y  I  *  E  V  V  R  L  H  G  V  P  V  S  I  I  S  D  R  G  S  *  F  T  S  S  F  W  R  T  F  Q  D  E  L  G  T  R  V  D  L  S  T  A  F  H  P  Q  T  D  G  Q  S  E  C  T  I  Q  V  L  E  D  M  L  R  A  C  V  L  E  F  G  G  Q  W  D  Q  F  L  P  L  A  E  F  A  Y  N  N  S  Y  H  S  S  </second_frame>
            <third_frame>   *  G  L  V  V  N  F  R  D  Y  P  F  P  S  G  S  G  I  A  L  L  W  I  L  W  L  V  Y  R  G  L  L  E  D  L  I  V  F  G  S  S  L  I  D  *  P  S  Q  H  I  S  F  P  F  N  L  H  L  V  P  R  G  W  L  V  S  T  F  E  R  W  F  D  F  M  G  C  Q  F  L  L  Y  Q  I  G  V  L  S  S  R  L  A  F  G  G  P  F  R  M  S  W  A  P  G  L  T  *  A  Q  L  S  T  R  R  L  M  V  S  Q  S  A  L  F  R  S  L  R  T  C  Y  G  L  V  F  W  S  L  V  V  N  G  T  S  S  C  L  W  Q  N  L  H  I  T  T  A  T  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68148" stop="68360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSSFWRTFQDELGTRVDLSTAFHPQTDGQSECTIQVLEDMLRACVLEFGGQWDQFLPLAEFAYNNSYHSS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67884" stop="68090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRPGGEFQGLPIPEWKWDRITMDFVAGLPRTSRGFDSIWVIVDRLTKSAHFLPVQSSFSAERLARIYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="77163" PGL_stop="77818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77163" e_stop="77818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="77163" e_stop="77818" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77163" stop="77818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAATCAGGTTCTTACTTATCTTAGTGGGCTATCTGATTAGGGCCATACACCTCCAGTGTTTTCTGCACCAGCTCCTCAGGTTCAAAGAGTAAAACATGCAGCTGCTGTGGCTCTCCGCATGGATGCATCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACAGGTGATCAACATGAACTTTTCATTAAGTTCTTAAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAAGATGCCTATGATTTTATGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGGATGCCATAATATGGAAGCGGTCATATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTTTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGACCAAATTTCGTGCACTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGCTTTGTGAAAGGATTGAGATCAGATTTTCAGATCCCAGCCTTACACGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  V  G  Y  L  I  R  A  I  H  L  Q  C  F  L  H  Q  L  L  R  F  K  E  *  N  M  Q  L  L  W  L  S  A  W  M  H  H  W  K  *  A  R  F  L  D  *  L  Q  G  L  *  *  Q  V  I  N  M  N  F  S  L  S  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  K  M  P  M  I  L  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  P  I  S  F  R  G  M  P  *  Y  G  S  G  H  M  L  S  V  N  Q  H  R  H  H  P  *  L  G  H  H  F  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  E  G  C  L  L  L  L  M  R  P  N  F  V  H  Y  P  G  M  P  L  S  F  A  S  V  H  K  S  G  F  A  A  L  *  K  D  *  D  Q  I  F  R  S  Q  P  Y  T  *   </first_frame>
            <second_frame>  D  D  *  S  G  S  Y  L  S  *  W  A  I  *  L  G  P  Y  T  S  S  V  F  C  T  S  S  S  G  S  K  S  K  T  C  S  C  C  G  S  P  H  G  C  I  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  R  *  S  T  *  T  F  H  *  V  L  K  V  E  T  S  S  L  Q  G  C  *  I  *  R  C  L  *  F  Y  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  V  C  D  L  S  V  S  G  G  C  H  N  M  E  A  V  I  C  *  V  S  T  S  T  G  T  T  H  D  L  G  I  I  F  *  L  I  Y  G  E  V  Y  T  P  D  F  E  G  *  E  E  R  *  V  P  E  P  R  A  R  K  D  V  C  C  C  L  *  D  Q  I  S  C  T  I  Q  V  C  H  S  A  L  L  Q  S  T  R  A  D  S  P  L  C  E  R  I  E  I  R  F  S  D  P  S  L  T  R  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  *  G  H  T  P  P  V  F  S  A  P  A  P  Q  V  Q  R  V  K  H  A  A  A  V  A  L  R  M  D  A  S  L  E  V  G  T  F  P  R  L  T  T  G  S  I  M  T  G  D  Q  H  E  L  F  I  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  M  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  D  A  I  I  W  K  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  A  A  Y  E  T  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  F  Q  I  P  A  L  H  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77210" stop="77818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHTPPVFSAPAPQVQRVKHAAAVALRMDASLEVGTFPRLTTGSIMTGDQHELFIKFLKLKPPVFKGAESEDAYDFMVDCHELLHKMDIVERFGVEFVTYQFQGDAIIWKRSYVECQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFLSLEQGRMSVAAYETKFRALSRYATQLCFSPQERIRRFVKGLRSDFQIPALHVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="84497" PGL_stop="85177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84497" e_stop="84544"/>
            <exon e_start="84957" e_stop="85177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.646"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.646">
            <gDNA_exon_boundary e_start="84497" e_stop="84544" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84545" i_stop="84956" i_length="412"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="84957" e_stop="85177" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84497" stop="84544"/>
              <exon start="84957" stop="85177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTAAATAATTAATAAAGAAAAATCTGAAAAAAGAAGATGTAAAA : ATCAATAACTATTATTATTCCCATAATCTGGAAGTCATACTCACAAGAACATCTATAATCAAATTACTAAACTAAGAGTATTCTAAGAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAGTTACT</gDNA_template>
            <first_frame> F  F  K  *  L  I  K  K  N  L  K  K  E  D  V  K  :  I  N  N  Y  Y  Y  S  H  N  L  E  V  I  L  T  R  T  S  I  I  K  L  L  N  *  E  Y  S  K  K  L  K  I  H  K  K  L  V  H  A  G  S  S  R  H  Q  D  L  K  K  K  I  Q  S  K  L  E  A  L  A  H  P  E  F  P  M  *  *  D  W  L  E  L   </first_frame>
            <second_frame>  F  L  N  N  *  *  R  K  I  *  K  K  K  M  *  K :   S  I  T  I  I  I  P  I  I  W  K  S  Y  S  Q  E  H  L  *  S  N  Y  *  T  K  S  I  L  R  S  *  K  Y  I  R  S  *  S  M  P  E  V  Q  G  I  K  T  *  R  R  R  S  S  P  S  *  K  H  *  L  T  L  N  F  R  C  S  K  T  G  L  S  Y  </second_frame>
            <third_frame>   F  *  I  I  N  K  E  K  S  E  K  R  R  C  K   : N  Q  *  L  L  L  F  P  *  S  G  S  H  T  H  K  N  I  Y  N  Q  I  T  K  L  R  V  F  *  E  A  K  N  T  *  E  A  S  P  C  R  K  F  K  A  S  R  L  E  E  E  D  P  V  Q  A  R  S  I  S  S  P  *  I  S  D  V  V  R  L  A  *  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="93819" PGL_stop="86080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93819" e_stop="93663"/>
            <exon e_start="86577" e_stop="86080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="93819" e_stop="93663" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93662" i_stop="86578" i_length="7085"/>
          </intron>
          <exon e_serial="2" e_score="0.898">
            <gDNA_exon_boundary e_start="86577" e_stop="86080" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93819" stop="93663"/>
              <exon start="86577" stop="86080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACAGGCTGAGGCGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAGAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACAG : GCAGGACGGACCGTCACAGATTATTCAGTGGAAATTGAGTCTCTGACCCTTGTGACGACCTGCAGGACGGACCCTCGCAGGCACGACGGACCGTCGCAGGTTGCGCAATCCCAGTCTGGGTCGGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTTGAACGAGAGAGAGGATCGAACGAGAGGAAAAACACAAAGCTTGGGAAATTGCTGGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATT</gDNA_template>
            <first_frame> K  K  Q  A  E  A  T  D  P  T  T  D  R  H  G  H  D  G  P  S  Q  G  L  V  S  E  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  N  G  M  A  G  R  T  V  T   : G  R  T  D  R  H  R  L  F  S  G  N  *  V  S  D  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  T  V  A  G  C  A  I  P  V  W  V  G  F  L  D  T  F  *  G  T  F  L  T  I  L  A  L  I  I  K  L  V  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  V  I  I  A  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  V  *  I  K  K  I  E  R  T  R  E  R  E  R  K  L  N  E  R  E  D  R  T  R  G  K  T  Q  S  L  G  N  C  W  L  D  H  E  S  S  V  E  V  G  Y  G  F  H  A  I  R  S  K  L  L  I  A  N  D  M  C  *  *  Y  </first_frame>
            <second_frame>  K  N  R  L  R  R  R  I  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  :  A  G  R  T  V  T  D  Y  S  V  E  I  E  S  L  T  L  V  T  T  C  R  T  D  P  R  R  H  D  G  P  S  Q  V  A  Q  S  Q  S  G  S  D  F  L  I  R  F  K  G  R  F  *  L  F  L  P  *  L  *  S  *  W  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  L  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  *  T  R  E  R  I  E  R  E  E  K  H  K  A  W  E  I  A  G  L  I  T  N  L  R  W  R  *  V  M  V  F  M  L  F  V  V  N  S  *  *  R  M  I  C  V  S  S  I </second_frame>
            <third_frame>   K  T  G  *  G  D  G  S  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  R  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R :   Q  D  G  P  S  Q  I  I  Q  W  K  L  S  L  *  P  L  *  R  P  A  G  R  T  L  A  G  T  T  D  R  R  R  L  R  N  P  S  L  G  R  I  S  *  Y  V  L  R  D  V  F  D  Y  S  C  L  N  Y  K  V  S  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E  G  L  N  K  E  N  R  K  N  K  R  K  R  E  K  V  E  R  E  R  G  S  N  E  R  K  N  T  K  L  G  K  L  L  A  *  S  R  I  F  G  G  G  R  L  W  F  S  C  Y  S  *  *  T  L  N  S  E  *  Y  V  L  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93725" stop="93663"/>
                    <exon start="86577" stop="86422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWVLKIDSLNFVTEWQDGPSQAGRTVTDYSVEIESLTLVTTCRTDPRRHDGPSQVAQSQSGSDFLIRFKGRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93819" stop="93663"/>
                    <exon start="86577" stop="86540"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQAEATDPTTDRHGHDGPSQGLVSEHLENLKLGTENRLSELRNGMAGRTVTGRTDRHRLFSGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90920" e_stop="90748"/>
            <exon e_start="90003" e_stop="89475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="90920" e_stop="90748" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90747" i_stop="90004" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="90003" e_stop="89475" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90920" stop="90748"/>
              <exon start="90003" stop="89475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAAGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTATTCGTGCTAAGAAAATGGTTAGAAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTGCCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTCGAACCGGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  N  S  P  V  C  E  R  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  Y  S  C  *  E  N  G  *  K  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  A  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  R  S  R  T  G  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  R  V  F  E  C  V  *  T  T </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  L  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  E  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  I  R  A  K  K  M  V  R  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  *  E  F  S  N  V  Y  R  L   </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  E  F  A  G  L  *  K  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  C  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  R  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  L  F  V  L  R  K  W  L  E  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  C  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  S  I  S  N  R  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  E  S  F  R  M  C  I  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90919" stop="90748"/>
                    <exon start="90003" stop="89624"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMVDFDVILGMTWLSLQFAILDCNAKTVTLAKPETDPLVWEGDYTSNPVRIISFIRAKKMVRKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGHTPHFYTPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="91907" e_stop="91621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="91907" e_stop="91621" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91907" stop="91621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  H  L  Y  F  S  L  R  G  Y  K  T  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  T  F  T  F  P  *  E  A  I  R  L  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91824" stop="91621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAIRLLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="93075" e_stop="92805"/>
            <exon e_start="92652" e_stop="92409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="93075" e_stop="92805" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92804" i_stop="92653" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="92652" e_stop="92409" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93075" stop="92805"/>
              <exon start="92652" stop="92409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAC : GTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S   : R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  V  N  N  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  :  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  </second_frame>
            <third_frame>   *  S  T  L  L  I  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T :   F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="87422" PGL_stop="87598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87422" e_stop="87598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="87422" e_stop="87598" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87422" stop="87598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0291F09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="88903" PGL_stop="89615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88903" e_stop="89615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="88903" e_stop="89615" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88903" stop="89615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCAACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTTATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGG</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  L  V  Y  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  L  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C   </first_frame>
            <second_frame>  N  P  L  T  N  Q  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  S  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  </second_frame>
            <third_frame>   I  P  *  Q  I  N  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  L  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89167" stop="89406"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNLVYQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89099" stop="89296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKISFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="89896" PGL_stop="91614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89896" e_stop="91614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="89896" e_stop="91614" e_length="1719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89896" stop="90226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90103" stop="90661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90107" stop="91543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91182" stop="91614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGACACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACATAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTATAACTCTGTTTTGGAAAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTGCAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCTTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAATCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTAGGTCCAATGAGGCCTCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGTGGAGTCACTGTCCTAGTATCAGATGGGCTAGACGCTCGTCCTCTTTCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  T  H  K  K  M  W  I  R  D  Q  I  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  H  N  N  G  P  Y  R  S  S  V  C  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  F  L  D  H  H  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  Y  N  S  V  L  E  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  G  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  L  S  Q  T  G  E  F  A  L  V  D  *  N  I  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  I  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  G  P  M  R  P  P  Y  E  E  P  *  W  L  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  V  E  S  L  S  *  Y  Q  M  G  *  T  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </first_frame>
            <second_frame>  I  C  L  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  H  I  R  K  C  G  S  G  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  N  I  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  I  T  L  F  W  K  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  C  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  F  H  K  P  A  N  S  L  L  W  T  E  T  *  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  S  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  *  V  Q  *  G  L  H  T  R  S  H  S  G  C  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  W  S  H  C  P  S  I  R  W  A  R  R  S  S  S  F  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </second_frame>
            <third_frame>   S  V  S  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  T  *  Q  W  A  L  S  F  V  C  L  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  K  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  A  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  A  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  G  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  R  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  V  L  V  S  D  G  L  D  A  R  P  L  S  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90645" stop="91034"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNLFDVDVGVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRSCGLKHSWVAYRDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASIG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90335" stop="90589"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTISSTTTSSRITASAMTTSTSNIWRSITLFWKISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNCSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91391" stop="91612"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFSFPILPFSYYFLSRWWSHCPSIRWARRSSSFPRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="96865" PGL_stop="94264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96865" e_stop="95198"/>
            <exon e_start="94878" e_stop="94264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96865" e_stop="95198" e_length="1668"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="95197" i_stop="94879" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="94878" e_stop="94264" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96865" stop="95198"/>
              <exon start="94878" stop="94264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGACCTCAGTTTTAACACATTAAATGGTACAATTCCTCAGGACCTCTTATTCCCAATGAACTTGCAGTTTGTTGATCTCACTTCCAATAAGTTAGAGGGACCTGTTCCTTCAAACATGTCGATAAATCTGATCAGGTTGAGATTGGGGCAAAATGCTTTGAGTGGGTCATTTCCATCTGCTTCTTTTGAAAGCCTTCAAAGTTTGACCTACTTGGAACTGGACAACAACCAGTTAACTGGACCAATTCCTTCTGAATTGGGGAAGTGCCAAAAGTTGGCCCTTTTGAACTTAGCTCAGAATAAGCTGAGTGGTGTAATTCCTGTTGAGTTGGGTGATATGTCTAATCTTCAGGTACTGAGTCTTCAATCCAATAACCTAGTTGGAGAAATCCCAAGTAATATCTCACAGTTGAACAGATTGCAGAAACTCAATTTCAGCTCGAATTCGTTGACTGGTTCCATACCAAGTTCATTATCAAGTTTGAGAAGTCTCACAAACTTGAATTTGCAGGGGAATAAACTAAGCGGTCGAATTCCGGTTGACATTAGTAACTTAAATGTGCTGTTAGAACTCCAACTTGGAGGGAACCAACTCAGTGGGCCTATTCCTGATATGCCATTGAGTTTACAGATTGCTTTGAATCTGAGTCACAATCTTTTTCAAGGACCTATACCAAGTAGTTTTTCTAGATTGACTTCATTGGAAGTTTTGGATCTCTCTTACAACAGGTTCTCGGGTCAGATTCCAGAGTACCTGGCCGGAATGAAAGGCTTGACTAGGTTGGTGCTTTCAAACAATCAACTGTCTGGAGTTGTTCCAAAGTTTGGAAGTTTTGTCATTGTTGATACAGATGGAAATGGGGTTCTGATCTATCCTTCACCAGTTGCTCCACCACAAGCTGCTGCAAAAAAGAGAAAATCAATAGTTGTTGCAGTTGTTGTCCCAATTGCAGGTGTAGCAACAATTGCCATTTTCGTGGTGATTGCTATTTCAATCTCTAGAAGATATTACAGGATCAATGATGAACATTTTCACTCAGGAGTACAAATTTCTCAATCCCCTGTCGTTCAGGGAAAGGTTTTAACTGCAAACAGCATTCACAAGTCAAATATAGACTTCACAAAGGCCATGGTAGCAGTGTCTGAGCCCTCAAATGTTGTGTTCAAGACAAGATTTTCAACCTACTATAAAGCTGTTATGCCGTCGGGTACAACCTATTTTGTCAAGAAGCTTAATTGGAGTGACAAAATATTTCAGTTGGGAAGCCATGAACTATTTGGGGAAGAGTTAAGAAATATTGGAAAGCTGAATAATTCGAATGTCATGATTCCACTAGGCTATCTTTTGGCTGCTGATAGTGCTTACCTCTTCTACGAATTTGCCCCCATTGGCTCGTTATATGATGTTCTTCGTGGTAGCTTGGGCTACTCGTTAGATTGGGCAAGTCGCTACAGCATAGCTATTGGAGTAGCTCAGGGTTTAGCTTTTCTTCATGGATGTGACAAGGGTCCAATCCTCCTCCTCGACCTTTCCAGCAAGAGCATTCTCTTGAAGTCCCAGAATGAGGCTCAGATAGGAGACATTGAACTCTACAAGGTGATGGATCCTTCGAAGAGCACAGGCAGCTTTTCTGCTGTTGCTGGTTCTGTCGGTTATATTCCTCCAG : AATATGCATACACAATGAGAGTCACAATGGCTGGAAATGTATATAGCTTTGGGGTCGTTCTGCTGGAATTGTTGACAGGAAGGCCTGCAGTTAGTCAGGGAACCGAGTTAGCCAAGTCAGTGCTGAGCAACTCTGAGAAGCACAGCAAGTGGGATCACATTCTGGATTCTAGCATTTCTAAGGCATCGCTCAACGTTAGGAGCCAGATGTTAGCAGTCCTCAAATTGGCTCTAGCTTGTGTCAGTGTATCACCAGAAGGCCGGCCAAAGATGAAGAGTGTGCTTCGAGTGCTTCTCCATGCAAGGTAATCGTACGTCAAAGGAGAAAGTCAAGGAGAAAACAGCCAAGATTGTTTTCTTCTTTTTCTTTTGGGGAGGAGCTGTAAGTGGTGAAGGTGTTGTGATCTATGCAGAATATGCCAGTTTTGTCAGTTTATACATATTATATTAATGTAAACATATAGATATATGATGATAGTAGCTACATAACTTTGAATATGATGTTAGTTCTCAGTGTAACATAGTCCATTTTTCTTGTTCATGTGTAATCATATATATATCATATCATATTATATTATAAGTGGGTAGCCTCTACTTCAAAAGTTGAATTACAAAA</gDNA_template>
            <first_frame> W  T  S  V  L  T  H  *  M  V  Q  F  L  R  T  S  Y  S  Q  *  T  C  S  L  L  I  S  L  P  I  S  *  R  D  L  F  L  Q  T  C  R  *  I  *  S  G  *  D  W  G  K  M  L  *  V  G  H  F  H  L  L  L  L  K  A  F  K  V  *  P  T  W  N  W  T  T  T  S  *  L  D  Q  F  L  L  N  W  G  S  A  K  S  W  P  F  *  T  *  L  R  I  S  *  V  V  *  F  L  L  S  W  V  I  C  L  I  F  R  Y  *  V  F  N  P  I  T  *  L  E  K  S  Q  V  I  S  H  S  *  T  D  C  R  N  S  I  S  A  R  I  R  *  L  V  P  Y  Q  V  H  Y  Q  V  *  E  V  S  Q  T  *  I  C  R  G  I  N  *  A  V  E  F  R  L  T  L  V  T  *  M  C  C  *  N  S  N  L  E  G  T  N  S  V  G  L  F  L  I  C  H  *  V  Y  R  L  L  *  I  *  V  T  I  F  F  K  D  L  Y  Q  V  V  F  L  D  *  L  H  W  K  F  W  I  S  L  T  T  G  S  R  V  R  F  Q  S  T  W  P  E  *  K  A  *  L  G  W  C  F  Q  T  I  N  C  L  E  L  F  Q  S  L  E  V  L  S  L  L  I  Q  M  E  M  G  F  *  S  I  L  H  Q  L  L  H  H  K  L  L  Q  K  R  E  N  Q  *  L  L  Q  L  L  S  Q  L  Q  V  *  Q  Q  L  P  F  S  W  *  L  L  F  Q  S  L  E  D  I  T  G  S  M  M  N  I  F  T  Q  E  Y  K  F  L  N  P  L  S  F  R  E  R  F  *  L  Q  T  A  F  T  S  Q  I  *  T  S  Q  R  P  W  *  Q  C  L  S  P  Q  M  L  C  S  R  Q  D  F  Q  P  T  I  K  L  L  C  R  R  V  Q  P  I  L  S  R  S  L  I  G  V  T  K  Y  F  S  W  E  A  M  N  Y  L  G  K  S  *  E  I  L  E  S  *  I  I  R  M  S  *  F  H  *  A  I  F  W  L  L  I  V  L  T  S  S  T  N  L  P  P  L  A  R  Y  M  M  F  F  V  V  A  W  A  T  R  *  I  G  Q  V  A  T  A  *  L  L  E  *  L  R  V  *  L  F  F  M  D  V  T  R  V  Q  S  S  S  S  T  F  P  A  R  A  F  S  *  S  P  R  M  R  L  R  *  E  T  L  N  S  T  R  *  W  I  L  R  R  A  Q  A  A  F  L  L  L  L  V  L  S  V  I  F  L  Q  :  N  M  H  T  Q  *  E  S  Q  W  L  E  M  Y  I  A  L  G  S  F  C  W  N  C  *  Q  E  G  L  Q  L  V  R  E  P  S  *  P  S  Q  C  *  A  T  L  R  S  T  A  S  G  I  T  F  W  I  L  A  F  L  R  H  R  S  T  L  G  A  R  C  *  Q  S  S  N  W  L  *  L  V  S  V  Y  H  Q  K  A  G  Q  R  *  R  V  C  F  E  C  F  S  M  Q  G  N  R  T  S  K  E  K  V  K  E  K  T  A  K  I  V  F  F  F  F  F  W  G  G  A  V  S  G  E  G  V  V  I  Y  A  E  Y  A  S  F  V  S  L  Y  I  L  Y  *  C  K  H  I  D  I  *  *  *  *  L  H  N  F  E  Y  D  V  S  S  Q  C  N  I  V  H  F  S  C  S  C  V  I  I  Y  I  S  Y  H  I  I  L  *  V  G  S  L  Y  F  K  S  *  I  T  K </first_frame>
            <second_frame>  G  P  Q  F  *  H  I  K  W  Y  N  S  S  G  P  L  I  P  N  E  L  A  V  C  *  S  H  F  Q  *  V  R  G  T  C  S  F  K  H  V  D  K  S  D  Q  V  E  I  G  A  K  C  F  E  W  V  I  S  I  C  F  F  *  K  P  S  K  F  D  L  L  G  T  G  Q  Q  P  V  N  W  T  N  S  F  *  I  G  E  V  P  K  V  G  P  F  E  L  S  S  E  *  A  E  W  C  N  S  C  *  V  G  *  Y  V  *  S  S  G  T  E  S  S  I  Q  *  P  S  W  R  N  P  K  *  Y  L  T  V  E  Q  I  A  E  T  Q  F  Q  L  E  F  V  D  W  F  H  T  K  F  I  I  K  F  E  K  S  H  K  L  E  F  A  G  E  *  T  K  R  S  N  S  G  *  H  *  *  L  K  C  A  V  R  T  P  T  W  R  E  P  T  Q  W  A  Y  S  *  Y  A  I  E  F  T  D  C  F  E  S  E  S  Q  S  F  S  R  T  Y  T  K  *  F  F  *  I  D  F  I  G  S  F  G  S  L  L  Q  Q  V  L  G  S  D  S  R  V  P  G  R  N  E  R  L  D  *  V  G  A  F  K  Q  S  T  V  W  S  C  S  K  V  W  K  F  C  H  C  *  Y  R  W  K  W  G  S  D  L  S  F  T  S  C  S  T  T  S  C  C  K  K  E  K  I  N  S  C  C  S  C  C  P  N  C  R  C  S  N  N  C  H  F  R  G  D  C  Y  F  N  L  *  K  I  L  Q  D  Q  *  *  T  F  S  L  R  S  T  N  F  S  I  P  C  R  S  G  K  G  F  N  C  K  Q  H  S  Q  V  K  Y  R  L  H  K  G  H  G  S  S  V  *  A  L  K  C  C  V  Q  D  K  I  F  N  L  L  *  S  C  Y  A  V  G  Y  N  L  F  C  Q  E  A  *  L  E  *  Q  N  I  S  V  G  K  P  *  T  I  W  G  R  V  K  K  Y  W  K  A  E  *  F  E  C  H  D  S  T  R  L  S  F  G  C  *  *  C  L  P  L  L  R  I  C  P  H  W  L  V  I  *  C  S  S  W  *  L  G  L  L  V  R  L  G  K  S  L  Q  H  S  Y  W  S  S  S  G  F  S  F  S  S  W  M  *  Q  G  S  N  P  P  P  R  P  F  Q  Q  E  H  S  L  E  V  P  E  *  G  S  D  R  R  H  *  T  L  Q  G  D  G  S  F  E  E  H  R  Q  L  F  C  C  C  W  F  C  R  L  Y  S  S  R :   I  C  I  H  N  E  S  H  N  G  W  K  C  I  *  L  W  G  R  S  A  G  I  V  D  R  K  A  C  S  *  S  G  N  R  V  S  Q  V  S  A  E  Q  L  *  E  A  Q  Q  V  G  S  H  S  G  F  *  H  F  *  G  I  A  Q  R  *  E  P  D  V  S  S  P  Q  I  G  S  S  L  C  Q  C  I  T  R  R  P  A  K  D  E  E  C  A  S  S  A  S  P  C  K  V  I  V  R  Q  R  R  K  S  R  R  K  Q  P  R  L  F  S  S  F  S  F  G  E  E  L  *  V  V  K  V  L  *  S  M  Q  N  M  P  V  L  S  V  Y  T  Y  Y  I  N  V  N  I  *  I  Y  D  D  S  S  Y  I  T  L  N  M  M  L  V  L  S  V  T  *  S  I  F  L  V  H  V  *  S  Y  I  Y  H  I  I  L  Y  Y  K  W  V  A  S  T  S  K  V  E  L  Q   </second_frame>
            <third_frame>   D  L  S  F  N  T  L  N  G  T  I  P  Q  D  L  L  F  P  M  N  L  Q  F  V  D  L  T  S  N  K  L  E  G  P  V  P  S  N  M  S  I  N  L  I  R  L  R  L  G  Q  N  A  L  S  G  S  F  P  S  A  S  F  E  S  L  Q  S  L  T  Y  L  E  L  D  N  N  Q  L  T  G  P  I  P  S  E  L  G  K  C  Q  K  L  A  L  L  N  L  A  Q  N  K  L  S  G  V  I  P  V  E  L  G  D  M  S  N  L  Q  V  L  S  L  Q  S  N  N  L  V  G  E  I  P  S  N  I  S  Q  L  N  R  L  Q  K  L  N  F  S  S  N  S  L  T  G  S  I  P  S  S  L  S  S  L  R  S  L  T  N  L  N  L  Q  G  N  K  L  S  G  R  I  P  V  D  I  S  N  L  N  V  L  L  E  L  Q  L  G  G  N  Q  L  S  G  P  I  P  D  M  P  L  S  L  Q  I  A  L  N  L  S  H  N  L  F  Q  G  P  I  P  S  S  F  S  R  L  T  S  L  E  V  L  D  L  S  Y  N  R  F  S  G  Q  I  P  E  Y  L  A  G  M  K  G  L  T  R  L  V  L  S  N  N  Q  L  S  G  V  V  P  K  F  G  S  F  V  I  V  D  T  D  G  N  G  V  L  I  Y  P  S  P  V  A  P  P  Q  A  A  A  K  K  R  K  S  I  V  V  A  V  V  V  P  I  A  G  V  A  T  I  A  I  F  V  V  I  A  I  S  I  S  R  R  Y  Y  R  I  N  D  E  H  F  H  S  G  V  Q  I  S  Q  S  P  V  V  Q  G  K  V  L  T  A  N  S  I  H  K  S  N  I  D  F  T  K  A  M  V  A  V  S  E  P  S  N  V  V  F  K  T  R  F  S  T  Y  Y  K  A  V  M  P  S  G  T  T  Y  F  V  K  K  L  N  W  S  D  K  I  F  Q  L  G  S  H  E  L  F  G  E  E  L  R  N  I  G  K  L  N  N  S  N  V  M  I  P  L  G  Y  L  L  A  A  D  S  A  Y  L  F  Y  E  F  A  P  I  G  S  L  Y  D  V  L  R  G  S  L  G  Y  S  L  D  W  A  S  R  Y  S  I  A  I  G  V  A  Q  G  L  A  F  L  H  G  C  D  K  G  P  I  L  L  L  D  L  S  S  K  S  I  L  L  K  S  Q  N  E  A  Q  I  G  D  I  E  L  Y  K  V  M  D  P  S  K  S  T  G  S  F  S  A  V  A  G  S  V  G  Y  I  P  P   : E  Y  A  Y  T  M  R  V  T  M  A  G  N  V  Y  S  F  G  V  V  L  L  E  L  L  T  G  R  P  A  V  S  Q  G  T  E  L  A  K  S  V  L  S  N  S  E  K  H  S  K  W  D  H  I  L  D  S  S  I  S  K  A  S  L  N  V  R  S  Q  M  L  A  V  L  K  L  A  L  A  C  V  S  V  S  P  E  G  R  P  K  M  K  S  V  L  R  V  L  L  H  A  R  *  S  Y  V  K  G  E  S  Q  G  E  N  S  Q  D  C  F  L  L  F  L  L  G  R  S  C  K  W  *  R  C  C  D  L  C  R  I  C  Q  F  C  Q  F  I  H  I  I  L  M  *  T  Y  R  Y  M  M  I  V  A  T  *  L  *  I  *  C  *  F  S  V  *  H  S  P  F  F  L  F  M  C  N  H  I  Y  I  I  S  Y  Y  I  I  S  G  *  P  L  L  Q  K  L  N  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96863" stop="95198"/>
                    <exon start="94878" stop="94571"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1971</number_coding_nucleotides>
                  <number_encoded_amino_acids>657</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLSFNTLNGTIPQDLLFPMNLQFVDLTSNKLEGPVPSNMSINLIRLRLGQNALSGSFPSASFESLQSLTYLELDNNQLTGPIPSELGKCQKLALLNLAQNKLSGVIPVELGDMSNLQVLSLQSNNLVGEIPSNISQLNRLQKLNFSSNSLTGSIPSSLSSLRSLTNLNLQGNKLSGRIPVDISNLNVLLELQLGGNQLSGPIPDMPLSLQIALNLSHNLFQGPIPSSFSRLTSLEVLDLSYNRFSGQIPEYLAGMKGLTRLVLSNNQLSGVVPKFGSFVIVDTDGNGVLIYPSPVAPPQAAAKKRKSIVVAVVVPIAGVATIAIFVVIAISISRRYYRINDEHFHSGVQISQSPVVQGKVLTANSIHKSNIDFTKAMVAVSEPSNVVFKTRFSTYYKAVMPSGTTYFVKKLNWSDKIFQLGSHELFGEELRNIGKLNNSNVMIPLGYLLAADSAYLFYEFAPIGSLYDVLRGSLGYSLDWASRYSIAIGVAQGLAFLHGCDKGPILLLDLSSKSILLKSQNEAQIGDIELYKVMDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGRPAVSQGTELAKSVLSNSEKHSKWDHILDSSISKASLNVRSQMLAVLKLALACVSVSPEGRPKMKSVLRVLLHAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="97764" PGL_stop="97226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97764" e_stop="97226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="97764" e_stop="97226" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97764" stop="97226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACAAATAAAAAATGACCTTAAGGTATGCTCCCAATATAGTTATTACTATATTCTTGTCTTTTTCTCTTCAAATTGTGTTTTCCCAATTGCCCACAAATCAAATTAATGTCATGAGAAGTGTCTATGATCTGTTTCAGAATGATACTGGTGATTCTTTTGTATGGAATGGAACTGATAAAGCTTCAACCCCATGTTCTTGGAAAGGGGTTTCATGTAATTCTGATAATTCTTCCCTTACCAAAGTTACCTTTTCATTGTTCTCTATTTCTAGCTCTGAATTCTTGCCTTTTATTTGTCAAATTGGTACTTTGGAGTCTCTTGATGTTTCCCTGAACTTTTTGAGCTCTATCCCAAATGAGTTCATCACTGTTTGTGGGGGAATTAGTGGGTTGAAATTGTTGAACTTTAGTGGGAATAGATTGGAGGGTTTTTTGCCTACTTTCACTGGTTTTGGAAAGTTGGAGTCTTTAGACTTTTCTTATAATAGCTTGAAGGGAAAAGTTGACTTGCAGTTGAATGGATTGAATTCACTCA</gDNA_template>
            <first_frame> Q  K  Q  I  K  N  D  L  K  V  C  S  Q  Y  S  Y  Y  Y  I  L  V  F  F  S  S  N  C  V  F  P  I  A  H  K  S  N  *  C  H  E  K  C  L  *  S  V  S  E  *  Y  W  *  F  F  C  M  E  W  N  *  *  S  F  N  P  M  F  L  E  R  G  F  M  *  F  *  *  F  F  P  Y  Q  S  Y  L  F  I  V  L  Y  F  *  L  *  I  L  A  F  Y  L  S  N  W  Y  F  G  V  S  *  C  F  P  E  L  F  E  L  Y  P  K  *  V  H  H  C  L  W  G  N  *  W  V  E  I  V  E  L  *  W  E  *  I  G  G  F  F  A  Y  F  H  W  F  W  K  V  G  V  F  R  L  F  L  *  *  L  E  G  K  S  *  L  A  V  E  W  I  E  F  T   </first_frame>
            <second_frame>  K  N  K  *  K  M  T  L  R  Y  A  P  N  I  V  I  T  I  F  L  S  F  S  L  Q  I  V  F  S  Q  L  P  T  N  Q  I  N  V  M  R  S  V  Y  D  L  F  Q  N  D  T  G  D  S  F  V  W  N  G  T  D  K  A  S  T  P  C  S  W  K  G  V  S  C  N  S  D  N  S  S  L  T  K  V  T  F  S  L  F  S  I  S  S  S  E  F  L  P  F  I  C  Q  I  G  T  L  E  S  L  D  V  S  L  N  F  L  S  S  I  P  N  E  F  I  T  V  C  G  G  I  S  G  L  K  L  L  N  F  S  G  N  R  L  E  G  F  L  P  T  F  T  G  F  G  K  L  E  S  L  D  F  S  Y  N  S  L  K  G  K  V  D  L  Q  L  N  G  L  N  S  L  </second_frame>
            <third_frame>   K  T  N  K  K  *  P  *  G  M  L  P  I  *  L  L  L  Y  S  C  L  F  L  F  K  L  C  F  P  N  C  P  Q  I  K  L  M  S  *  E  V  S  M  I  C  F  R  M  I  L  V  I  L  L  Y  G  M  E  L  I  K  L  Q  P  H  V  L  G  K  G  F  H  V  I  L  I  I  L  P  L  P  K  L  P  F  H  C  S  L  F  L  A  L  N  S  C  L  L  F  V  K  L  V  L  W  S  L  L  M  F  P  *  T  F  *  A  L  S  Q  M  S  S  S  L  F  V  G  E  L  V  G  *  N  C  *  T  L  V  G  I  D  W  R  V  F  C  L  L  S  L  V  L  E  S  W  S  L  *  T  F  L  I  I  A  *  R  E  K  L  T  C  S  *  M  D  *  I  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97751" stop="97227"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMTLRYAPNIVITIFLSFSLQIVFSQLPTNQINVMRSVYDLFQNDTGDSFVWNGTDKASTPCSWKGVSCNSDNSSLTKVTFSLFSISSSEFLPFICQIGTLESLDVSLNFLSSIPNEFITVCGGISGLKLLNFSGNRLEGFLPTFTGFGKLESLDFSYNSLKGKVDLQLNGLNSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="122457" PGL_stop="117108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122457" e_stop="121933"/>
            <exon e_start="121217" e_stop="120936"/>
            <exon e_start="120823" e_stop="120676"/>
            <exon e_start="120554" e_stop="120472"/>
            <exon e_start="117700" e_stop="117623"/>
            <exon e_start="117528" e_stop="117108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.435" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122457" e_stop="121933" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="121932" i_stop="121218" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121217" e_stop="120936" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.914">
            <gDNA_intron_boundary i_start="120935" i_stop="120824" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120823" e_stop="120676" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.435">
            <gDNA_intron_boundary i_start="120675" i_stop="120555" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120554" e_stop="120472" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120471" i_stop="117701" i_length="2771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117700" e_stop="117623" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="117622" i_stop="117529" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="117528" e_stop="117108" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122457" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120472"/>
              <exon start="117700" stop="117623"/>
              <exon start="117528" stop="117108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122367" stop="121933"/>
              <exon start="121217" stop="120936"/>
              <exon start="120823" stop="120676"/>
              <exon start="120554" stop="120529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATTCTTAATTCTTTAAATTATTAATTTTGTGATTTTTCACTTGTATAAAATCAGAGAAGAGAGCTCTGCAATTGCTTCTTCCCCGAAGTTCAGTTCCCAATGGACGCTCTGAATTCTTACGCATCGTCGGCGGCGATGGCGCAACAAACATGGGAGTTAGAAAACAACATCGTGACGACGGACGCGCCATCGGGGTCGGCACCGGAAAACTCTGCGTCGGATGCAATATTCCACTATGACGATGCGGCACAGACTAAGTTCCAGCGGGAGAAGCCGTGGACGAGTGACCCTCACTACTTCAAGCGCGTGAAGATCTCTGCTCTTGCTCTTCTAAAGATGGTTGTTCACGCGCGTTCTGGAGGTACAATTGAGGTAATGGGACTAATGCAAGGTAAGACGGATGGAGATGCTATTATTGTTATGGACGCTTTTGCCCTTCCAGTTGAAGGAACTGAAACTAGGGTTAATGCTCAAGCTGATGCGTATGAATACATGGTTGAATATTCACAGACCAACAAGCAG : GCTGGTCGGCTGGAGAATGTGGTCGGATGGTATCATTCTCATCCTGGCTATGGATGCTGGCTCTCTGGCATTGATGTAACTACACAAATGCTTAACCAGCAGTATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATTGGTGCCTTTCGAACATATCCTGAAGGATATAAGCCTCCAGATGACCCTATCTCAGAGTACCAGACCATTCCTTTGAACAAAATTGAAGACTTCGGAGTACATTGCAAGCAG : TATTATTCATTGGATATTACCTATTTCAAGTCCTCTCTCGATTGCCATCTCTTGGACCTACTATGGAACAAGTATTGGGTGAACACACTTTCTTCTTCTCCTTTGCTTGGAAATGGAGACTATGTTGCTGGACAGATATCTGATCTTG : CTGAAAAGTTGGAGCAAGCTGAAAATCAGCTGTCCCATTCACGTTTTGGGCACTTAGTGGCAGCCCCTCAAAGGAAGAAGGAG : GAAGAATCTCAGCTTGCTAAGATTACACGTGATAGTGCTAAGATTACTGTCGAGCAAGTTCATGGCTTAATGTCGCAG : GTTATTAAAGACATTCTTTTCAATAGCGTTTGTAAGTCAGGCAAGTCGCAGACTGAACCCTCTGATCCAGAGCCGATGGTCGAAACCTGAATAGTTTCATCCTATTAGTCCAGATTTAGATTTGTCTCTAGGTTTCTTTTTGCAGTTAACTAAACATACAGCTTTGAGTCTATTATATGTAGGTCCCAAGGGGTGAAAGTTTAAGATGGCCACCCCTGATATAAATTATCATTGCTGTTTAATGTTTTGAAGATTTTGCCAAATCTTTCACTAGTTCTTTTCCTTGTCTTCTTTTCTTTTGTTATTTAGAGAAGTTCTGTAAATCATGAACCATCCTTTTATATGAATGGTACAACCTCTATCTTGTATTAGATCGACATTTTCTATTTTAGAAATTATTAATAGATTCAGTAACTTTACT</gDNA_template>
            <first_frame> Y  I  L  N  S  L  N  Y  *  F  C  D  F  S  L  V  *  N  Q  R  R  E  L  C  N  C  F  F  P  E  V  Q  F  P  M  D  A  L  N  S  Y  A  S  S  A  A  M  A  Q  Q  T  W  E  L  E  N  N  I  V  T  T  D  A  P  S  G  S  A  P  E  N  S  A  S  D  A  I  F  H  Y  D  D  A  A  Q  T  K  F  Q  R  E  K  P  W  T  S  D  P  H  Y  F  K  R  V  K  I  S  A  L  A  L  L  K  M  V  V  H  A  R  S  G  G  T  I  E  V  M  G  L  M  Q  G  K  T  D  G  D  A  I  I  V  M  D  A  F  A  L  P  V  E  G  T  E  T  R  V  N  A  Q  A  D  A  Y  E  Y  M  V  E  Y  S  Q  T  N  K  Q  :  A  G  R  L  E  N  V  V  G  W  Y  H  S  H  P  G  Y  G  C  W  L  S  G  I  D  V  T  T  Q  M  L  N  Q  Q  Y  Q  E  P  F  L  A  V  V  I  D  P  T  R  T  V  S  A  G  K  V  E  I  G  A  F  R  T  Y  P  E  G  Y  K  P  P  D  D  P  I  S  E  Y  Q  T  I  P  L  N  K  I  E  D  F  G  V  H  C  K  Q  :  Y  Y  S  L  D  I  T  Y  F  K  S  S  L  D  C  H  L  L  D  L  L  W  N  K  Y  W  V  N  T  L  S  S  S  P  L  L  G  N  G  D  Y  V  A  G  Q  I  S  D  L   : A  E  K  L  E  Q  A  E  N  Q  L  S  H  S  R  F  G  H  L  V  A  A  P  Q  R  K  K  E  :  E  E  S  Q  L  A  K  I  T  R  D  S  A  K  I  T  V  E  Q  V  H  G  L  M  S  Q  :  V  I  K  D  I  L  F  N  S  V  C  K  S  G  K  S  Q  T  E  P  S  D  P  E  P  M  V  E  T  *  I  V  S  S  Y  *  S  R  F  R  F  V  S  R  F  L  F  A  V  N  *  T  Y  S  F  E  S  I  I  C  R  S  Q  G  V  K  V  *  D  G  H  P  *  Y  K  L  S  L  L  F  N  V  L  K  I  L  P  N  L  S  L  V  L  F  L  V  F  F  S  F  V  I  *  R  S  S  V  N  H  E  P  S  F  Y  M  N  G  T  T  S  I  L  Y  *  I  D  I  F  Y  F  R  N  Y  *  *  I  Q  *  L  Y  </first_frame>
            <second_frame>  I  F  L  I  L  *  I  I  N  F  V  I  F  H  L  Y  K  I  R  E  E  S  S  A  I  A  S  S  P  K  F  S  S  Q  W  T  L  *  I  L  T  H  R  R  R  R  W  R  N  K  H  G  S  *  K  T  T  S  *  R  R  T  R  H  R  G  R  H  R  K  T  L  R  R  M  Q  Y  S  T  M  T  M  R  H  R  L  S  S  S  G  R  S  R  G  R  V  T  L  T  T  S  S  A  *  R  S  L  L  L  L  F  *  R  W  L  F  T  R  V  L  E  V  Q  L  R  *  W  D  *  C  K  V  R  R  M  E  M  L  L  L  L  W  T  L  L  P  F  Q  L  K  E  L  K  L  G  L  M  L  K  L  M  R  M  N  T  W  L  N  I  H  R  P  T  S  R :   L  V  G  W  R  M  W  S  D  G  I  I  L  I  L  A  M  D  A  G  S  L  A  L  M  *  L  H  K  C  L  T  S  S  I  R  S  P  F  L  Q  L  L  L  I  Q  Q  E  L  F  L  L  E  K  L  R  L  V  P  F  E  H  I  L  K  D  I  S  L  Q  M  T  L  S  Q  S  T  R  P  F  L  *  T  K  L  K  T  S  E  Y  I  A  S  S :   I  I  H  W  I  L  P  I  S  S  P  L  S  I  A  I  S  W  T  Y  Y  G  T  S  I  G  *  T  H  F  L  L  L  L  C  L  E  M  E  T  M  L  L  D  R  Y  L  I  L  :  L  K  S  W  S  K  L  K  I  S  C  P  I  H  V  L  G  T  *  W  Q  P  L  K  G  R  R  R :   K  N  L  S  L  L  R  L  H  V  I  V  L  R  L  L  S  S  K  F  M  A  *  C  R  R :   L  L  K  T  F  F  S  I  A  F  V  S  Q  A  S  R  R  L  N  P  L  I  Q  S  R  W  S  K  P  E  *  F  H  P  I  S  P  D  L  D  L  S  L  G  F  F  L  Q  L  T  K  H  T  A  L  S  L  L  Y  V  G  P  K  G  *  K  F  K  M  A  T  P  D  I  N  Y  H  C  C  L  M  F  *  R  F  C  Q  I  F  H  *  F  F  S  L  S  S  F  L  L  L  F  R  E  V  L  *  I  M  N  H  P  F  I  *  M  V  Q  P  L  S  C  I  R  S  T  F  S  I  L  E  I  I  N  R  F  S  N  F  T </second_frame>
            <third_frame>   Y  S  *  F  F  K  L  L  I  L  *  F  F  T  C  I  K  S  E  K  R  A  L  Q  L  L  L  P  R  S  S  V  P  N  G  R  S  E  F  L  R  I  V  G  G  D  G  A  T  N  M  G  V  R  K  Q  H  R  D  D  G  R  A  I  G  V  G  T  G  K  L  C  V  G  C  N  I  P  L  *  R  C  G  T  D  *  V  P  A  G  E  A  V  D  E  *  P  S  L  L  Q  A  R  E  D  L  C  S  C  S  S  K  D  G  C  S  R  A  F  W  R  Y  N  *  G  N  G  T  N  A  R  *  D  G  W  R  C  Y  Y  C  Y  G  R  F  C  P  S  S  *  R  N  *  N  *  G  *  C  S  S  *  C  V  *  I  H  G  *  I  F  T  D  Q  Q  A   : G  W  S  A  G  E  C  G  R  M  V  S  F  S  S  W  L  W  M  L  A  L  W  H  *  C  N  Y  T  N  A  *  P  A  V  S  G  A  L  S  C  S  C  Y  *  S  N  K  N  C  F  C  W  K  S  *  D  W  C  L  S  N  I  S  *  R  I  *  A  S  R  *  P  Y  L  R  V  P  D  H  S  F  E  Q  N  *  R  L  R  S  T  L  Q  A   : V  L  F  I  G  Y  Y  L  F  Q  V  L  S  R  L  P  S  L  G  P  T  M  E  Q  V  L  G  E  H  T  F  F  F  S  F  A  W  K  W  R  L  C  C  W  T  D  I  *  S  C :   *  K  V  G  A  S  *  K  S  A  V  P  F  T  F  W  A  L  S  G  S  P  S  K  E  E  G   : G  R  I  S  A  C  *  D  Y  T  *  *  C  *  D  Y  C  R  A  S  S  W  L  N  V  A   : G  Y  *  R  H  S  F  Q  *  R  L  *  V  R  Q  V  A  D  *  T  L  *  S  R  A  D  G  R  N  L  N  S  F  I  L  L  V  Q  I  *  I  C  L  *  V  S  F  C  S  *  L  N  I  Q  L  *  V  Y  Y  M  *  V  P  R  G  E  S  L  R  W  P  P  L  I  *  I  I  I  A  V  *  C  F  E  D  F  A  K  S  F  T  S  S  F  P  C  L  L  F  F  C  Y  L  E  K  F  C  K  S  *  T  I  L  L  Y  E  W  Y  N  L  Y  L  V  L  D  R  H  F  L  F  *  K  L  L  I  D  S  V  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0291F09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122406" stop="121933"/>
                    <exon start="121217" stop="120936"/>
                    <exon start="120823" stop="120676"/>
                    <exon start="120554" stop="120472"/>
                    <exon start="117700" stop="117623"/>
                    <exon start="117528" stop="117439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQRRELCNCFFPEVQFPMDALNSYASSAAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 81 chains have been computed
$ 
$ memory statistics:
$ 367552 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 15314 bytes was the average size of a spliced alignment
$ 22768 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1517 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 102 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-22 18:23:35
-->
