<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 21:29:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313298" ref_strand="+" ref_description="SGN-U313298        Tomato 200607 #1 [83 ESTs aligned] arabidopsis/peptide: | Symbol: None | embryo-abundant protein-related, similar to embryo-abundant protein (Picea glauca) GI:1350531 | chr2:17259019-17260135 FORWARD | Aliases: F13H10.7, F13H10_7(evalue: 2e-90, score=328) genbank/nr: gi|15227331|ref|NP_181669.1| embryo-abundant protein -related [Arabidopsis thaliana] gi|25349338|pir||A84841 probable embryo-abundant protein [imported] - Arabidopsis thaliana gi|3894186|gb|AAC78535.1| putative embryo-abundant protein [Arabidopsis thaliana] gi|18252865|gb|AAL62359.1| putative embryo-abundant protein [Arabidopsis thaliana] gi|30023764|gb|AAP13415.1| At2g41380 [Arabidopsis thaliana](evalue: 2e-88, score=328)">
      <seq>tttaaaatacatgtagttcattattaacttacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7781" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8081" g_stop="8273" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="10123" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="960" r_length="767" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="964" polyA_stop="1000"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U313298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>960</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8081" e_stop="8273"/>
          <exon e_start="9357" e_stop="10123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTA</genome_strand>
        <mrna_strand>TTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313296" ref_strand="+" ref_description="SGN-U313296        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | embryo-abundant protein-related, similar to embryo-abundant protein (Picea glauca) GI:1350531 | chr2:17259019-17260135 FORWARD | Aliases: F13H10.7, F13H10_7(evalue: 2e-52, score=201) genbank/nr: gi|15227331|ref|NP_181669.1| embryo-abundant protein -related [Arabidopsis thaliana] gi|25349338|pir||A84841 probable embryo-abundant protein [imported] - Arabidopsis thaliana gi|3894186|gb|AAC78535.1| putative embryo-abundant protein [Arabidopsis thaliana] gi|18252865|gb|AAL62359.1| putative embryo-abundant protein [Arabidopsis thaliana] gi|30023764|gb|AAP13415.1| At2g41380 [Arabidopsis thaliana](evalue: 1e-50, score=201)">
      <seq>cacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaggtggtcactaaccaaaccaggtggtgttatagggtggtggtgttacactacacctaaaataaacaactcagtagatgcaatatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7849" stop="9962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8149" g_stop="8273" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9662" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="431" r_length="306" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U313296" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8149" e_stop="8273"/>
          <exon e_start="9357" e_stop="9662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGAT</genome_strand>
        <mrna_strand>CACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAGGTGGTCACTAACCAAACCAGGTGGTGTTATAGGGTGGTGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313297" ref_strand="+" ref_description="SGN-U313297        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | embryo-abundant protein-related, similar to embryo-abundant protein (Picea glauca) GI:1350531 | chr2:17259019-17260135 FORWARD | Aliases: F13H10.7, F13H10_7(evalue: 2e-67, score=252) genbank/nr: gi|20339366|gb|AAM19356.1| embryo-abundant protein EMB [Pisum sativum](evalue: 5e-74, score=280)">
      <seq>cataatttgaagccaagttaaaggacatatttatgtattatgtcttctatatttaaaacatctattcatttttggccggcataacgtaaatttcatcatatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttttccaagttgttattgttatgtatcttttaataataataaagtatctaagtactaattaatccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8863" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9163" g_stop="10127" g_length="965"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="965" r_length="965" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="966" polyA_stop="988"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U313297" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>965</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9163" e_stop="10127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAC</genome_strand>
        <mrna_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTTTCCAAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334261" ref_strand="-" ref_description="SGN-U334261        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | embryo-abundant protein-related, similar to embryo-abundant protein (Picea glauca) GI:1350531 | chr2:17259019-17260135 FORWARD | Aliases: F13H10.7, F13H10_7(evalue: 1e-33, score=140) genbank/nr: gi|20339366|gb|AAM19356.1| embryo-abundant protein EMB [Pisum sativum](evalue: 3e-44, score=181)">
      <seq>cagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcttatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaaacccccccttttacttatgtgcaaattatcatctatttattgtgtaagttatttattttagctgagattgatgcgcatcttttaataataataaagtatataaagaaaaaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9343" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9643" g_stop="10113" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="493"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U334261" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334261" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9643" e_stop="10113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAA</genome_strand>
        <mrna_strand>CAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCTTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAACCCCCCCTTTTACTTATGTGCAAATTATCATCTATTTATTGTGTAAGTTATTTATTTTAGCTGAGATTGATGCGCATCTTTTAATAATAATAAAGTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334260" ref_strand="-" ref_description="SGN-U334260        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gatgttgtgagaaaatttgcaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcttatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatagaagtagttatgtgcccctcatcatctatttattttgtatgttatttctcttagttgttattgttatgtttttaggggtcttaataaagtatctaagtactaattaatacaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9594" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9894" g_stop="10127" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="257"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U334260" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334260" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9894" e_stop="10127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAC</genome_strand>
        <mrna_strand>GATGTTGTGAGAAAATTTGCAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCTTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATAGAAGTAGTTATGTGCCCCTCATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTTTTTAGGGGTCTTAATAAAGTATCTAAGTACTAATTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320830" ref_strand="+" ref_description="SGN-U320830        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic rpb5 RNA polymerase subunit family protein, similar to SP:P19388 DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) {Homo sapiens}; contains Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal domain, PF01191: RNA polymerase Rpb5 C-terminal domain | chr3:21136836-21138615 FORWARD | Aliases: F24I3.160(evalue: 2e-65, score=246) genbank/nr: gi|15230206|ref|NP_191267.1| eukaryotic rpb5 RNA polymerase subunit family [Arabidopsis thaliana] gi|11261045|pir||T47768 hypothetical protein F24I3.160 - Arabidopsis thaliana gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana] gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana] gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana](evalue: 2e-63, score=246)">
      <seq>aaagtataatggtaatatctcaaaagtacgaaagtacaatgatagcggtattaatgcctaaaaaatatcccgatgtacgatagttcggcagtatatacactttttcccttttaaaagatattcttttggtaattttgacagttcgtaaaacccccaaaacccctcgaacgaacgtagctgaaaaatcaaagaagagcagagcagaggaagatggatcttaatgggttagcgatggatgttgatggcgaaaatttgggtacttgtttagctagctttgttgatgatggtacagttgaaagtcacagatactttcttgctcgcagaaccatactcgaaatgcttaaagatcgtggttttgcaatacccaattcagaaatcgacactacacttcaagaattcagagaaaaatatggtcaaacacctgatgttgagcgccttagagtttccgcaatgcacaggaatgacctaaccaataaggttttggtcatcttctgcgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcagataatgaacaaggaatctttgagtcgactgatattggtcattcaaaatcaaatgactaatccagctttgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaatatcacaaaacatgttttaaagccaaggcatgagttgttaaccgacactgagaaggagaagctgttgaagaagtataacttggaagagaagcagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctatttgaactttttcctcaacccctggggttcctcccttctcaaccttagttcaaatgaagagcttgtaggtatttagtacactattcttgtcactccatttaaattcttgttcggcaagaggaattaatcgaaattaaatttttttttcagtatcgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="20198" stop="10741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19898" g_stop="19422" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13084" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="654" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.201" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12415" g_stop="12302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="768" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11424" g_stop="11047" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="1146" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1147" polyA_stop="1158"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-U320830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1146</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19898" e_stop="19422"/>
          <exon e_start="13260" e_stop="13084"/>
          <exon e_start="12415" e_stop="12302"/>
          <exon e_start="11424" e_stop="11047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATAATGGTAATATCTCAAAAGTACGAAAGTACAATGATAGCGGTATTAATGCCTAAAAAATATCCCGATGTACGATAGTTCGGCAGTATATACACTTTTTCCCTTTTAAAAGATATTCTTTTGGTAATTTTGACAGTTCGTAAAACCCCCAAAACCCCTCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAGGTTTGCTTTTGACAGCCTTTGAATTTTCAGAAACATGCCTGTACAACTGTATATCTTTCTAACCACAGCTTTCTACTGACGCTTGATTCCTGGCTTCCTCACTTGAGTTTAGCCAGTAAAAAGATTCTATCGTCTTTTCTTTCTTTTCTGAGAGCTTCACTCAAAAAGGGACTTGCTGTTAAATACCCGAAAGGCTAATATCATTTTCTCATACACTTTACAGTCCATAATCTGGTAAGAGTCTATCTCGTTGATGTGGTCAGAGTCGTTGTTTCCATCTATCACAGTTAATAAAAGTTGGTCCTTTTTGTCCCTCGCGGGATGGTTCAGACACTGAGAGGTTGTTACAGTTTGGCTGGATTCCAGATACTATGGCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTTTCAGTATCGAA</genome_strand>
        <mrna_strand>AAAGTATAATGGTAATATCTCAAAAGTACGAAAGTACAATGATAGCGGTATTAATGCCTAAAAAATATCCCGATGTACGATAGTTCGGCAGTATATACACTTTTTCCCTTTTAAAAGATATTCTTTTGGTAATTTTGACAGTTCGTAAAACCCCCAAAACCCCTCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTTTCAGTATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320829" ref_strand="+" ref_description="SGN-U320829        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic rpb5 RNA polymerase subunit family protein, similar to SP:P19388 DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) {Homo sapiens}; contains Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal domain, PF01191: RNA polymerase Rpb5 C-terminal domain | chr3:21136836-21138615 FORWARD | Aliases: F24I3.160(evalue: 2e-13, score=73.2) genbank/nr: gi|15230206|ref|NP_191267.1| eukaryotic rpb5 RNA polymerase subunit family [Arabidopsis thaliana] gi|11261045|pir||T47768 hypothetical protein F24I3.160 - Arabidopsis thaliana gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana] gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana] gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana](evalue: 1e-11, score=73.2)">
      <seq>gcattttgagccaatacctagaactcttttgcatatagtgttgtcttgaaggaggttaataacaggagccttctaatacttatcttggtaatttaatgttgtagaccagtgttggtgacttctctggattactgtttgaaaaaatgctttatgttcgtcattatccctttactgtgagggtgaaatgacttaaatgctgttctaaaacttttagtttaggtacttatagattgctgcctttttaaatttgatgaatgggaagcattacttgccctatctctctcacactacttatcagaatcaatatgtaggaccttacttgtagagacaggtttctgcgttcatcttatgcttatcaatggtattgttgctgatcactctctccagcagaaatccatagttcacaaggctatatatgcacttcaatgtaccactcttttcttcaaacattatcaatgcagttcattttgtctgagtattgttattgtattgatgttttccagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctacttgaactttttcctcaacccctggggttcctcccttctcaaccttagttcaaatgaagagcttgtaggtatttagtacactattcttgtcactccatttaaattcttgttcggcaagagggaattaatcgaaattaatgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="12227" stop="10758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11927" g_stop="11058" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-U320829" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11927" e_stop="11058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGA-GGAATTAATCGAAATTAAATTTTTTTT</genome_strand>
        <mrna_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTGAAAAAATGCTTTATGTTCGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCTGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTACTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGGAATTAATCGAAATTAATGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319327" ref_strand="+" ref_description="SGN-U319327        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT4G25650.2 | Symbol: None | Rieske (2Fe-2S) domain-containing protein, similar to cell death suppressor protein lls1 from Zea mays (gi:1935909), Rieske iron-sulfur protein Tic55 from Pisum sativum (gi:2764524); contains Pfam PF00355 Rieske (2Fe-2S) domain | chr4:13080914-13083206 REVERSE | Aliases: None (evalue: 3e-73, score=272) genbank/nr: Rieske(evalue: 4e-75, score=284)">
      <seq>tgaaattcttggctctcctctttgtttcttccgcatgggctcatggccagtggcctagcaaggacatacacaaatgtgtggtctatcaatcttcgtattttgactatttctttttaccttttcttttaaaaataaattctgtccataaattaattgtagaagatgacacaaccaatgtgtttgttgtatatctgaaagccacaaaacacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcatggttggtgctttaatggagctggtgattgtaagttgatccctcaagctcctagggatggccctcaggttcatacgtccaaaagagcttgcgcaactgtttatccaagttgtgtgcaaaatgacattctttggttttggccgaactctgatcctctatacaaggacatatatttgatgaaaagggctccctatatacctgaacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="21957" stop="24836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22257" g_stop="23114" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="858" r_length="858" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24395" g_stop="24536" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="1000" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U319327" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1000</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22257" e_stop="23114"/>
          <exon e_start="24395" e_stop="24536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCTTGGCTCTCCTCTTTGTTTCTTCCGCATGGGCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAGGTAATATTGGTTTTCTACTTTTGATTATGGCCTTTATAGACTGTCTTTTTGTTGTAATGATCATATCAAGTGTTTGCAAAACAAAGAAGTTTGGTGTTGATTAACTTGGCTAAAAGTGAGGAGGATAATAGAGATACCCTTTTGTTGCTTGTAGACCCAACTTTTGCACTGTTAACCAGGTATCAACATTTTTAATTCTATAAATGTCAATTCTGTTCAATAAAATGGTGGAGTTTTTGCGTGAGAACATTTAAATATAGCTTCACACTGTGGGATGAGCTGTGTGATCTTGAATACTCGTGTTTGATTTCACTGAATTTGATAATCTTGATTTGCTCAGGAAAAGTCTGAAAGTTATATAGGGGGTGTTAAATGTTGCGAAAATGCTTGTTCATTTGGAGATGCATTGAAAGACAACACTCTACCCATACTAACCTTTTAGCCTTATACGCGACCTCCACTCTTTCCTAGCTAGAGTCATGTCCTTGGTAATATGAAGTTGCGTCATGTTTTGTATACTCACCTCTTCCCAATACTTCTTCGGTCTACCTCTACCTCTCATCGTACTCCCTATAGCCAACATCTATTACACCTCCTCATTAGAGCGTCATCGCACCTTCTCTTCACATGTCCAAACCATTTGAGACTCCATTAAATAATAACTAGACCAAATTATTAATGAAATAGTTATATCAGTATGGTCAAATATCAATTCCAATTCCAGTGCTAGAGCACATAATTTACTGTTGTCATCATTGGTCAAGGTATAGATCAACCATTTGTTTTTTCTTTCTGCTATTCTGAAGGTTTTCCTAGGAAACTTATAGGTAAAGAACTCGAGCATTTTGCATTTTGACATCGTACTTTTCATGCACAGTTCACCATGACATTTATTTGAAGACTTAATCAACTCGGTTCACAATTAAAAGGATAATAACCTTGTGATCATAGCTTACCACCTTTACCTGTGTGACCTTAGTCCTTTATAATGGTGATTGGGACTTCGTAAGAACTGGTGAAGGCTTTCTATCTTTATTGACTGATGAAAGATGATGACAACTCTCATAATTAATAGTCCTGGATATTCTTTTATTTTGTTTTTTCACCCTTTTTCTTGTGAATGTGAATCTTCATTTTCCAAACATGGGAAGTTTGTGTATTGTGTACTTCTCGGAAATGCTTATAGATAAGCACTAGTATTTGACAACAATTTTACAACAGTATTTGCATTAGCTTTACACAAGTTAACTGGGAATGACATTTTTGTATTAGTCGTGCAGGTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGCCTCCCTATATACCTGAACTTGATG</genome_strand>
        <mrna_strand>TGAAATTCTTGGCTCTCCTCTTTGTTTCTTCCGCATGGGCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGGCTCCCTATATACCTGAACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320680" ref_strand="+" ref_description="SGN-U320680        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT4G25650.1 | Symbol: None | Rieske (2Fe-2S) domain-containing protein, similar to cell death suppressor protein lls1 from Zea mays (gi:1935909), Rieske iron-sulfur protein Tic55 from Pisum sativum (gi:2764524); contains Pfam PF00355 Rieske (2Fe-2S) domain | chr4:13080914-13083206 REVERSE | Aliases: L73G19.30, L73G19_30 (evalue: 3e-98, score=355) genbank/nr: Rieske(evalue: 2e-116, score=421)">
      <seq>cttaacttgatgacagttcgttttcgaaaactttcatagtcagagatatatcatatgggtatgagcttctgattgaaaaccttatggacccagctcatgtccaatattcacattatggcattatgaatgttccagtagccccccaaagtgtgaaagctgatcgagaaggaggaagaccacttgacataactatcacgaagttggatgtaaatgtcattactgcaaaccagggacctggacggaacacatttgttccgccttgtgtgtattatagttattttgctttcggaggatctcagggaaaaacaactgctgtatcatctggaactgtacaggaaaaaccttcagctgagaagcagaaaaaagcacttttagttttcatctgtattccggttagtccaggtcatagcagaattatatttgcatctccaagaaactttgccacttgggcagatcgaataattccacgttggatatttcacctgggacaaaatctaattctggattctgatttgtatcttcttcatgtggaggagcgcaagctaaaggaaattggctcttacaattggcataaagcttgctatgtgccaacaaaggcagatgccattgttgttgcttttagaaggtggctaaacaaatatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattggtgccattggaattgttgctgctttaaagcagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattactatgcttcgtggcctcgagatggttatctcatttcatatacaaaaatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaagtttgttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="24225" stop="27671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24525" g_stop="24582" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24583" i_stop="25034" i_length="452">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25035" g_stop="25124" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="148" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25125" i_stop="25218" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25219" g_stop="25405" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="335" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25406" i_stop="25492" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25493" g_stop="25690" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="533" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26693" g_stop="26880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="721" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27034" g_stop="27370" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="1058" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1059" polyA_stop="1076"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U320680" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1058</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24525" e_stop="24582"/>
          <exon e_start="25035" e_stop="25124"/>
          <exon e_start="25219" e_stop="25405"/>
          <exon e_start="25493" e_stop="25690"/>
          <exon e_start="26693" e_stop="26880"/>
          <exon e_start="27034" e_stop="27370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTTGATGACAGTTCGTTTTCGAAAACTTTCATAGTCAGAGATATATCATATGGGTAAGCAGACACAGATATATCCTGCTACCTTTTGTGGAGAAAGCCTTCACAAACTGTTTCACTTTTACTGAACAGAAAAAAACGTTTCTTTCTAAGTTGCTCGGACTCTCCAAAAATGTTGCCAAACCCGTGTCTGATCCTTCAAAAATACATTATTTTTGTAGGACACCTATGGACCTTTTTGAAGAGTTCGAGCAACATAGGTTTTTTTATAGAGGGGAAGAGGGGGTTGGGAAGCCTATAGAATCTAAAAGGCCATCAATAGAGGAAAGAAGGAGAAATTCAAACTTTATAATGTGAACAAGCAACTATGTAAAAATGTAATTTCAATCTTAACATTGTACAAGGATAAATCACTGTGTAATAAATTATGAGAAACTTGTGTGACAAAAACTACCTACTTTTTTATTTAATTTTAGTTATAATCTGTAACAAAATCTGGTAATTTTCAGGTATGAGCTTCTGATTGAAAACCTTATGGACCCAGCTCATGTCCAATATTCACATTATGGCATTATGAATGTTCCAGTAGCCCCCCAAAGATAAGAAGCTTATACTATTTCATACACATTTTATTCTATATTCTTTTCTTTGCATGTGTAAATAACTTCATGACTAACAGAATTGTTTATTCACTGTGAAAGCTGATCGAGAAGGAGGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAGGTAATTCTTGTGCCTTCCATATTATTAGTCTTTTTTCAACATTTATTTGGTACTCTTTGCAGCAGTTTAAATAAATATTTCGTGCAGGAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAGGTAAATCCATTCTTTATTGCATCTTTTCCATTTCTATTGTGTACTTGTTAAATTTAGCTGTCCCTCAGAAGGTTGTTAGCTTAAAAAAAAGAGAAGACTTGTGATTTACACATCCCTGAAGCTTTAGAGATGTTTACTATGCAAGGACCCTTTTCGCGTCCCATGAAAAGGAAACAAGCATATATGTTGAGCTAAATTTGTTGAAACCCCTTCAAGTTACCAGACGGAAAGTTTTAGATTTATGGTCAAACTCAAGAGTGGAGATCCCATAGCTTTTTTCTGCTTCTCAGCTGAAGGTTTTTCCTTCTCCAGAATCTAAACTGGCATAGCTTCTGGAGCTGGAACTATCAATAGGAACTTCTCTATACTGTTACTTTTAGGCAATATCATGATTCGATGCTATTTTCACTACTCTTGTATACTACTCAACAAAGTAACTCTAGACATGTGAACCGCTTTTTTCCGACTCTAATCTTCTAACTTGTCTCAAGTTGTGTTAAAAGCTACTGGAATACTTTTCGATGGAAAGCTGAGGATGTGTGGGATTTATTTCATCAAAAACTTTTAGTTTCTACCAGTCCATTCCCCTTTCTTCACTTTCTCCTTTTCTTCTTGTCTGCGGCTTTACTCTCCCCATCTGTTAATATTTATGTTGTGGTTGTCTTTTTACTCTGTGCTTTACTTTTGACAATCAAATGAAATGAACAACAAAAACAACCATACAGATAGCCAAATAAACACCTTTAGTTGCACGGGATTGTTCCAGCTCTCCAACTTCACGAGGCTTCATCCACCTGTTCAAAATTAGCCTAGGAGTTCAATGCTCATGTTACCACCTTTTACTTCAAACAATAAATCTTGAGCATAGTCTCGCTATTGGAACATATTGCATGACTGTTTGTAAGTTAGATTCCGGTGAAGCGTTGGTGCTTTTAGGTGAAAATTTCCATTTACAATATGACGAGTTGTCCTTTCTCATTCAATTTGTTTTCCATTATGAAGGAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</genome_strand>
        <mrna_strand>CTTAACTTGATGACAGTTCGTTTTCGAAAACTTTCATAGTCAGAGATATATCATATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTCTGATTGAAAACCTTATGGACCCAGCTCATGTCCAATATTCACATTATGGCATTATGAATGTTCCAGTAGCCCCCCAAAG..............................................................................................TGTGAAAGCTGATCGAGAAGGAGGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAG.......................................................................................GAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="78178" stop="77279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77878" g_stop="77579" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77878" e_stop="77579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTC-GCAAGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="78604" stop="77519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78304" g_stop="77819" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78304" e_stop="77819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCAGCCACCCCCGAATCACCACCGCTCGTGTCACCCCCCAATACTCATCCCATGTTAACCCGTTGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACGCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGACACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTTCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320585" ref_strand="+" ref_description="SGN-U320585        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT3G12120.1 | Symbol: None | omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) | chr3:3860291-3863036 REVERSE | Aliases: T21B14.6 (evalue: 2e-142, score=502) genbank/nr: gi|51556906|gb|AAT72296.2| microsomal omega-6-desaturase [Nicotiana tabacum] (evalue: 5e-159, score=563)">
      <seq>ttatcacaaaccaaaatgggaggtggtggtaatatgactaaaattgaacaaaagattaaagtaccactatccaagcccccttttatacttagtgaactcaagaaggctattcctcctcattgctttcaacgatctctcgttcgctccttttcctacgttgttcgggatatcacactagtgtttgtattagggtatatcgctgcgaattacatctatgtccttccatctccatataattacctaggatggcctatttattggttttccctaggaagtgttttcacagcaatgtgggtcattgctcatgaatgtggccatcatggctttagtaattaccaatggatagatgacacggttggttttatcttctatacctcaatttgtgtcccttacttttcttggaaatacagtcatcgtcgtcatcactccaatgcaggttcgcttgaatatgatgaagtctacgtacctaggcttaaatccgaattacgttggttctctaaatatttcgacaatctaccaggacgaataatcgcgttcaccaccaccctcacggttggttggccttcttacatggccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattggctaagaggagctttagctactgtagatagagactttggtccactaaataatatatgtcataatgttacaaatactcatgttttgcatcatttattcacaaccataccacattatcatgcagtggaggcaacaaaagctatcaagccaatacttggagattactataattttgatagtacaccagtttataaagcaatatggaagaatataaatgagtgtatctatgtggagaaaaatgaagaaactcaagatagaggtgttttttggtataaaaacaaactctaaaagatgaatgtaagcatttaattattacttgtaatttggctaaatgttaagccttaataatttgttatggtttaattaaggtttacttatagcttgtaataattggattgttgcatttagaaatctccctaataaatcataacactctgtccgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="83750" stop="85648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84050" g_stop="85345" g_length="1296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1295" r_length="1295" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U320585" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1296</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84050" e_stop="85345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCACAAACCAAAATGGGAGGTGGTGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATCCAAGCCCCCTTTTATACTTAGTGAACTCAAGAAGGCTATTCCTCCTCATTGCTTTCAACGATCTCTCGTTCGCTCCTTTTCCTACGTTGTTCGGGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCTCCATATAATTACCTAGGATGGCCTATTTATTGGTTTTCCCTAGGAAGTGTTTTCACAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAATCACTCTGTCC</genome_strand>
        <mrna_strand>TTATCACAAACCAAAATGGGAGGTGGTGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATCCAAGCCCCCTTTTATACTTAGTGAACTCAAGAAGGCTATTCCTCCTCATTGCTTTCAACGATCTCTCGTTCGCTCCTTTTCCTACGTTGTTCGGGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCTCCATATAATTACCTAGGATGGCCTATTTATTGGTTTTCCCTAGGAAGTGTTTTCACAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAA-CACTCTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337154" ref_strand="+" ref_description="SGN-U337154        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G12120.1 | Symbol: None | omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) / delta-12 desaturase, identical to omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) SP:P46313 (Arabidopsis thaliana (Mouse-ear cress)) (Plant Cell 6:147-158(1994)) | chr3:3860291-3863036 REVERSE | Aliases: T21B14.6 (evalue: 8e-73, score=253) genbank/nr: gi|51556906|gb|AAT72296.2| microsomal omega-6-desaturase [Nicotiana tabacum] (evalue: 3e-81, score=284)">
      <seq>tggtaatatgactaaaattgaacaaaagattaaagtaccactattaaagcccccttttaaacttagtgaactcaagaaggctattcctcctcactgctttcaacgatctctcgttcgctccttctcctacgttgttcgtgatatcacactagtgtttgtattagggtatatcgctgcgaattacatctatgtccttccatccccatattattacctagcatggcctatttattggtttgctctaggtagtgctttcacaggaatatgggtccttgctcatgaatgtggccaccatggctttagtaattatcaatggatagatgacacggttggttttatcttatatacctcgatttgtgtgccttacttttcttggaaacgtactcatcatcgtcatcactccaatactggttcccttgaatatgatgaagtctatgtacctaggcttaaatccgaactacaatggttctccaaatatttcaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="92616" stop="93704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92916" g_stop="93404" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U337154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92916" e_stop="93404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATTAAAGCCCCCTTTTAAACTTAGTGAACTCAAGAAGGCTATTCCTCCTCACTGCTTTCAACGATCTCTCGTTCGCTCCTTCTCCTACGTTGTTCGTGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCCCCATATTATTACCTAGCATGGCCTATTTATTGGTTTGCTCTAGGTAGTGCTTTCACAGGAATATGGGTCCTTGCTCATGAATGTGGCCACCATGGCTTTAGTAATTATCAATGGATAGATGACACGGTTGGTTTTATCTTATATACCTCGATTTGTGTGCCTTACTTTTCTTGGAAACGTACTCATCATCGTCATCACTCCAATACTGGTTCCCTTGAATATGATGAAGTCTATGTACCTAGGCTTAAATCCGAACTACAATGGTTCTCCAAATATTTCAACAATCT</genome_strand>
        <mrna_strand>TGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATTAAAGCCCCCTTTTAAACTTAGTGAACTCAAGAAGGCTATTCCTCCTCACTGCTTTCAACGATCTCTCGTTCGCTCCTTCTCCTACGTTGTTCGTGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCCCCATATTATTACCTAGCATGGCCTATTTATTGGTTTGCTCTAGGTAGTGCTTTCACAGGAATATGGGTCCTTGCTCATGAATGTGGCCACCATGGCTTTAGTAATTATCAATGGATAGATGACACGGTTGGTTTTATCTTATATACCTCGATTTGTGTGCCTTACTTTTCTTGGAAACGTACTCATCATCGTCATCACTCCAATACTGGTTCCCTTGAATATGATGAAGTCTATGTACCTAGGCTTAAATCCGAACTACAATGGTTCTCCAAATATTTCAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344737" ref_strand="+" ref_description="SGN-U344737        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin motor protein-related, similar to centromere protein E GB:4502781 (Homo sapiens) | chr3:3143479-3154649 REVERSE | Aliases: F14P13.22(evalue: 1e-50, score=196) genbank/nr: gi|6056207|gb|AAF02824.1| hypothetical protein [Arabidopsis thaliana](evalue: 9e-49, score=196)">
      <seq>atgcttatcttttagttctttaggcagagagaaggaaaacattagaaaagatttggagaaaacaaaagcaaagttgagagacacagaatccaaacttaggaatgccatccaggagaagacaaaacttgagggtgaaagagcttgtgctgagagggaaattaaacgcttaaatggccagagggctattcttgagcgtgacatcaataaacgagactcaaatattggaagaaggcgtgattcagtcgttgataggagctctaatgtgctcgactccaaaagatccaagaattcctctgtttgtgtcgaacatgttgtgcaggaggagtatcggaaattggaagtgctggcttttgagatggagacaacaattgcttctttggaagaggaattaacaatttctcatgcagaaaatgaagaagccaattctagagcagaaaatttagcatgtgaattgcaagctttatctgacgagttgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="106613" stop="104163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106313" g_stop="106184" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106183" i_stop="106100" i_length="84">
            <donor d_prob="0.130" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106099" g_stop="105911" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="319" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105910" i_stop="104625" i_length="1286">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104624" g_stop="104463" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="481" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-U344737" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106313" e_stop="106184"/>
          <exon e_start="106099" e_stop="105911"/>
          <exon e_start="104624" e_stop="104463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTATCTTCTAGTTCTTTAGGCAGAGAGAAGGAAAACATTAGAAAAGATTTGGAGAAAACAAAAGCAAAGTTGAGAGACACAGAATCCAAACTTAGGAATGCCATCCAGGAGAAGACAAAACTTGAGGTTTCATTCGAATTTGTTTTGAAGGTTGATTTTCTTGTGCCGTCTAAGGCATTTCTATCTTTTCTGACGGTATCACGTTGTTAGGGTGAAAGAGCTTGTGCTGAGAGGGAAATTAAACGCTTAAATGGCCAGAGGGCTATTCTTGAGCGTGACATCAATAAACGAGACTCAAATATTGGAAGAAGGCGTGATTCAGTCGTTGATAGGAGCTCTAATGTGCTCGACTCCAAAAGATCCAAGAATTCCTCTGTTTGTGTCGAACATGTTGTGCAGGTAGGTATGATGTGCTCAAACTAGTGTAAATAAGTTCAAGAAGTGTGGCTCTATGTTACTTAAATGTATATCGGAACAGTGAAAAACACTTTCCACATTATCTGTTGGTCAAGTTTTGAAACTAGTCTCACACATGTAGATTGAGCATAACTTTATGGCACTGAAGGAAGTTAAACATCCACAACACAAACTTAGGCCATGACTGGAGTGGTTCAAGACCCTTCTATAAAATCCTTTGGAACCCCCTTACACAACCTATGTGGGACATTTAATAACTTAACACACTCCTGCACACATAACCCAGTTTTGGTGGTTCACACATGAACTTTATGGGTGTGAGATAGGCTTACTGATTGTTTATTCTATACCTCGTGAAGAATCTGAGTATTTTGTCCAAAACCTTGAGGCAATGGTGCGGTGGCCCTAGACCTTATATACAACTTTCATAGCCCTTAGCCCCTTACTCAGTCCATGCGGGAAAATCAGTAACTCCTTTACGGCAAAACAAGAGGGCAGACCAAAATTTGGTGTCCTTGTACTGTAGTTTTGTTCAGTAAACCATTTGTTTTAGAATATTACCTCTTCGTTAATAGAACTCTTGACAAGTAAAATAGGACAAGCACAAAAATTAACAAAAGGCTGTCCAAGTCGGGGCTTGGAGTATGACATTTGTCCTTTCACTTCAATTTCATGTTTGGGCTTTTGGGTTCTGTTAATCTCAATGTAAATCCTCTTATTGTCCCCAAGGATTGTTTCTAGCTTATATGCGACGTAATGAAAATTTCAAATAAAAGGAGCAGATCGTCATATGATAAAAGTACTTTACCATGTTCTTCTCCCAATCATCCTATGATGACAATCTCAGGATAATGTCAAACATTTTTAAGTGTTCAAATTTTATCACCAAATTAAGCATCACTAAACTCGGTATAAGCAGGCTATATTTACGGCACCCTTTAAGAAAATAAAAACCTTATTGGCATGCATCATGAAGTCTAATCTCAGAGGATGTTCATTTCATTCTTAGGATAGTGCTCATCTAAGTTAGGTCTAGGAGTCACTATAACGTTTATTTGTTAGTACTATTTTAAACATTATTTTGGCATTTAATGCCCTTATGCCATTCTGTCATTATATGTACTTTCTTCATCAATCTTATAAATAGTATCTCATATCCTGATGATATAAAAGTAGATTAGTAATTGATTGCCTGCATTCCGCTCAAGTGGGAAAGTTATTATCTTTGTTGCTTAATCTTAAGCTACTTTCCTTTTTCTGGTGTGAAGGAGGAGTATCGGAAATTGGAAGTGCTGGCTTTTGAGATGGAGACAACAATTGCTTCTTTGGAAGAGGAATTAACAATTTCTCATGCAGAAAATGAAGAAGCCAATTCTAGAGCAGAAAATTTAGCATGTGAATTGCAAGCTTTATCTGACGAGTTGAATATG</genome_strand>
        <mrna_strand>ATGCTTATCTTTTAGTTCTTTAGGCAGAGAGAAGGAAAACATTAGAAAAGATTTGGAGAAAACAAAAGCAAAGTTGAGAGACACAGAATCCAAACTTAGGAATGCCATCCAGGAGAAGACAAAACTTGAG....................................................................................GGTGAAAGAGCTTGTGCTGAGAGGGAAATTAAACGCTTAAATGGCCAGAGGGCTATTCTTGAGCGTGACATCAATAAACGAGACTCAAATATTGGAAGAAGGCGTGATTCAGTCGTTGATAGGAGCTCTAATGTGCTCGACTCCAAAAGATCCAAGAATTCCTCTGTTTGTGTCGAACATGTTGTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTATCGGAAATTGGAAGTGCTGGCTTTTGAGATGGAGACAACAATTGCTTCTTTGGAAGAGGAATTAACAATTTCTCATGCAGAAAATGAAGAAGCCAATTCTAGAGCAGAAAATTTAGCATGTGAATTGCAAGCTTTATCTGACGAGTTGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-BYUjxz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329282" ref_strand="+" ref_description="SGN-U329282        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tctctactgcgatgtcttgtaaccttttcgggttaatcttttcaatccttggcattatttagtctctctatattgtttattatttcctcgctcttgctttatactattcttctcaatcttattctagcttgctttaggtttttatggttacttgattgtctactttctttcctcagtgcaatcttcatcttcttggctacacttatttgcattttgtatattttttaagaccatattaattcaatacataattgttaccagttaaagtgattatcaagttcattctcagcggaaaaactgaatgcctatgtcatgtttatttggcacccataaattattcgacaaaatgtcctgtagaggcacattgcctaccacttctgaaaatagctttgaaattcactcaataggcattatacttctaaaatgtttgaaaaattgcccttaagaggcacattgtcaacggcttgtgaaaattgacttatggacttcaaaattcactcaacaagtattatctcagggcttctttctcctgtttttttactttcaaatctgggcaaaccatgcttattttcgtgcccatgaagtgttaaaaaaaaatcctcaagcagcacattgacaatggttcttgaaattgcctacgatggacatgtctattttggcatccatgaagtgttcgaaacaatgtcgtacactgccaacagcttcttgaaatgacttcaaaaattagtcaccaaatattatctcaattctgaaggcttcttttcactggcttctctttcaaatctgcacaggtcatgcttattttgatactagattctgagaacgtgccttgcacgtttgtcccttattattattatattaattttttatatactaaaaagttaaggaattaaaaatatgcttaaattaacaatagtagtttaaccatttatcttaattcgctaaataataacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-75M5e/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="131206" stop="132763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131506" g_stop="132463" g_length="958"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="957" r_length="957" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-U329282" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>958</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131506" e_stop="132463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGACTTCAAAAATTAGTCACCAAATATTATCTCAATTCTGAAGGCTTCTTTTCACTGGCTTCTCTTTCAAATCTGCACAGGTCATGCTTATTTTGATACTAGATTCTGAGAACGTGCCTTGCACGTTTGTCCCTTATTATTATTATATTAATTTTTTATATACTAAAAAGTTAAGGAATTAAAAATATGCTTAAATTAACAATAGTAGTTTAACCATTTATCTTTTATTCGCTAAATAATAACAAAT</genome_strand>
        <mrna_strand>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGACTTCAAAAATTAGTCACCAAATATTATCTCAATTCTGAAGGCTTCTTTTCACTGGCTTCTCTTTCAAATCTGCACAGGTCATGCTTATTTTGATACTAGATTCTGAGAACGTGCCTTGCACGTTTGTCCCTTATTATTATTATATTAATTTTTTATATACTAAAAAGTTAAGGAATTAAAAATATGCTTAAATTAACAATAGTAGTTTAACCATTTATC-TTAATTCGCTAAATAATAACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8081" PGL_stop="10127"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8081" e_stop="8273"/>
            <exon e_start="9357" e_stop="10127"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8081" e_stop="8273" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9357" e_stop="10127" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8081" stop="8273"/>
              <exon start="9357" stop="10123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8149" stop="8273"/>
              <exon start="9357" stop="9662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="10113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334261" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9894" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334260" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT : TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAC</gDNA_template>
            <first_frame> F  K  I  H  V  V  H  Y  *  L  T  K  K  K  N  G  K  F  V  H  *  A  S  T  T  I  F  K  G  *  A  K  L  P  S  R  I  I  Q  F  H  C  F  *  N  T  F  S  *  S  C  L  G  C  W  Y  W  *  W  P  G  C  S  I   : F  S  *  A  L  Q  E  C  D  S  Y  R  H  K  S  K  A  A  *  I  C  S  K  G  S  K  C  S  I  H  M  Y  L  S  *  V  V  K  I  R  N  R  N  K  N  R  I  R  I  K  C  R  F  S  N  N  C  T  S  N  A  L  V  *  S  T  N  F  L  *  T  C  *  M  V  T  Q  E  T  K  W  C  Y  S  I  M  V  L  H  Y  T  *  N  K  Q  L  S  R  C  N  I  *  *  I  L  H  K  *  C  W  T  L  L  G  I  T  K  K  I  G  R  *  K  V  *  N  Y  *  F  S  I  *  G  Y  R  W  M  *  S  *  W  T  I  *  V  Q  D  *  E  S  Y  G  L  G  F  L  F  Y  I  L  E  V  M  V  S  L  S  N  C  K  R  K  G  C  *  V  V  K  *  R  C  C  *  K  I  Y  K  C  L  E  *  R  W  E  E  *  E  K  S  D  L  S  Y  L  L  E  D  W  K  S  W  K  F  G  L  K  V  *  S  K  Y  N  *  L  C  A  L  D  H  L  F  I  L  Y  V  I  S  L  S  C  Y  C  Y  V  S  F  N  N  N  K  V  S  K  Y  *  L  I  </first_frame>
            <second_frame>  L  K  Y  M  *  F  I  I  N  L  Q  K  K  K  M  A  N  L  F  I  K  Q  A  Q  Q  Y  S  K  G  R  P  S  Y  P  Q  E  L  F  N  F  I  A  S  K  T  P  S  H  D  L  V  W  D  V  G  T  G  S  G  Q  A  A  Q  S  :  L  A  K  L  Y  K  N  V  I  A  T  D  T  S  P  K  Q  L  E  F  A  A  K  V  P  N  V  Q  Y  I  C  T  S  P  K  L  S  K  S  E  I  E  T  K  I  G  S  E  S  S  V  D  L  V  T  I  A  Q  A  M  H  W  F  D  L  P  T  F  Y  E  H  V  K  W  L  L  K  K  P  N  G  V  I  A  S  W  C  Y  T  T  P  K  I  N  N  S  V  D  A  I  F  D  K  F  Y  T  S  D  A  G  P  Y  W  E  S  P  R  K  L  V  D  E  K  Y  E  T  I  D  F  P  F  E  A  I  D  G  C  D  H  N  G  P  F  E  F  K  I  E  K  V  M  D  L  D  S  C  F  T  Y  L  K  S  W  S  A  Y  Q  T  A  K  E  K  G  V  E  L  L  S  E  D  V  V  E  K  F  T  S  A  W  N  E  D  G  K  S  E  K  K  V  I  Y  P  I  Y  L  R  I  G  K  V  G  N  L  D  *  K  C  K  A  N  T  I  S  Y  V  H  L  I  I  Y  L  F  C  M  L  F  L  L  V  V  I  V  M  Y  L  L  I  I  I  K  Y  L  S  T  N  *  Y </second_frame>
            <third_frame>   *  N  T  C  S  S  L  L  T  Y  K  K  K  K  W  Q  I  C  S  L  S  K  H  N  N  I  Q  R  V  G  Q  V  T  L  K  N  Y  S  I  S  L  L  L  K  H  L  L  M  I  L  F  G  M  L  V  L  V  V  A  R  L  L  N  L :   *  L  S  F  T  R  M  *  *  L  Q  T  Q  V  Q  S  S  L  N  L  Q  Q  R  F  Q  M  F  N  T  Y  V  P  L  L  S  C  Q  N  P  K  S  K  Q  K  *  D  Q  N  Q  V  *  I  *  *  Q  L  H  K  Q  C  I  G  L  I  Y  Q  L  F  M  N  M  L  N  G  Y  S  R  N  Q  M  V  L  *  H  H  G  V  T  L  H  L  K  *  T  T  Q  *  M  Q  Y  L  I  N  F  T  Q  V  M  L  D  L  I  G  N  H  Q  E  N  W  S  M  K  S  M  K  L  L  I  F  H  L  R  L  *  M  D  V  I  I  M  D  H  L  S  S  R  L  R  K  L  W  T  W  I  L  V  L  H  T  *  S  H  G  Q  L  I  K  L  Q  K  K  R  V  L  S  C  *  V  K  M  L  L  K  N  L  Q  V  L  G  M  K  M  G  R  V  R  K  K  *  F  I  L  F  T  *  G  L  E  K  L  E  I  W  I  E  S  V  K  Q  I  Q  L  V  M  C  T  *  S  S  I  Y  F  V  C  Y  F  S  *  L  L  L  L  C  I  F  *  *  *  *  S  I  *  V  L  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8097" stop="8273"/>
                    <exon start="9357" stop="10001"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIINLQKKKMANLFIKQAQQYSKGRPSYPQELFNFIASKTPSHDLVWDVGTGSGQAAQSLAKLYKNVIATDTSPKQLEFAAKVPNVQYICTSPKLSKSEIETKIGSESSVDLVTIAQAMHWFDLPTFYEHVKWLLKKPNGVIASWCYTTPKINNSVDAIFDKFYTSDAGPYWESPRKLVDEKYETIDFPFEAIDGCDHNGPFEFKIEKVMDLDSCFTYLKSWSAYQTAKEKGVELLSEDVVEKFTSAWNEDGKSEKKVIYPIYLRIGKVGNLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9163" e_stop="10127"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="9163" e_stop="10127" e_length="965"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9163" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="10113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334261" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9894" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334260" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAC</gDNA_template>
            <first_frame> H  N  L  K  P  S  *  R  T  Y  L  C  I  M  S  S  I  F  K  T  S  I  H  F  W  P  A  *  R  K  F  H  H  M  S  N  S  T  A  *  I  E  T  V  L  S  V  H  K  L  V  S  F  I  L  T  S  S  K  N  V  V  F  L  S  *  L  S  F  T  R  M  *  *  L  Q  T  Q  V  Q  S  S  L  N  L  Q  Q  R  F  Q  M  F  N  T  Y  V  P  L  L  S  C  Q  N  P  K  S  K  Q  K  *  D  Q  N  Q  V  *  I  *  *  Q  L  H  K  Q  C  I  G  L  I  Y  Q  L  F  M  N  M  L  N  G  Y  S  R  N  Q  M  V  L  *  H  H  G  V  T  L  H  L  K  *  T  T  Q  *  M  Q  Y  L  I  N  F  T  Q  V  M  L  D  L  I  G  N  H  Q  E  N  W  S  M  K  S  M  K  L  L  I  F  H  L  R  L  *  M  D  V  I  I  M  D  H  L  S  S  R  L  R  K  L  W  T  W  I  L  V  L  H  T  *  S  H  G  Q  L  I  K  L  Q  K  K  R  V  L  S  C  *  V  K  M  L  L  K  N  L  Q  V  L  G  M  K  M  G  R  V  R  K  K  *  F  I  L  F  T  *  G  L  E  K  L  E  I  W  I  E  S  V  K  Q  I  Q  L  V  M  C  T  *  S  S  I  Y  F  V  C  Y  F  S  *  L  L  L  L  C  I  F  *  *  *  *  S  I  *  V  L  I  N   </first_frame>
            <second_frame>  I  I  *  S  Q  V  K  G  H  I  Y  V  L  C  L  L  Y  L  K  H  L  F  I  F  G  R  H  N  V  N  F  I  I  C  Q  T  P  P  H  K  L  K  Q  S  L  V  F  I  N  L  F  L  L  S  *  L  P  P  K  M  L  C  S  S  V  S  *  A  L  Q  E  C  D  S  Y  R  H  K  S  K  A  A  *  I  C  S  K  G  S  K  C  S  I  H  M  Y  L  S  *  V  V  K  I  R  N  R  N  K  N  R  I  R  I  K  C  R  F  S  N  N  C  T  S  N  A  L  V  *  S  T  N  F  L  *  T  C  *  M  V  T  Q  E  T  K  W  C  Y  S  I  M  V  L  H  Y  T  *  N  K  Q  L  S  R  C  N  I  *  *  I  L  H  K  *  C  W  T  L  L  G  I  T  K  K  I  G  R  *  K  V  *  N  Y  *  F  S  I  *  G  Y  R  W  M  *  S  *  W  T  I  *  V  Q  D  *  E  S  Y  G  L  G  F  L  F  Y  I  L  E  V  M  V  S  L  S  N  C  K  R  K  G  C  *  V  V  K  *  R  C  C  *  K  I  Y  K  C  L  E  *  R  W  E  E  *  E  K  S  D  L  S  Y  L  L  E  D  W  K  S  W  K  F  G  L  K  V  *  S  K  Y  N  *  L  C  A  L  D  H  L  F  I  L  Y  V  I  S  L  S  C  Y  C  Y  V  S  F  N  N  N  K  V  S  K  Y  *  L  I  </second_frame>
            <third_frame>   *  F  E  A  K  L  K  D  I  F  M  Y  Y  V  F  Y  I  *  N  I  Y  S  F  L  A  G  I  T  *  I  S  S  Y  V  K  L  H  R  I  N  *  N  S  P  *  C  S  *  T  C  F  F  Y  P  N  F  L  Q  K  C  C  V  P  Q  L  A  K  L  Y  K  N  V  I  A  T  D  T  S  P  K  Q  L  E  F  A  A  K  V  P  N  V  Q  Y  I  C  T  S  P  K  L  S  K  S  E  I  E  T  K  I  G  S  E  S  S  V  D  L  V  T  I  A  Q  A  M  H  W  F  D  L  P  T  F  Y  E  H  V  K  W  L  L  K  K  P  N  G  V  I  A  S  W  C  Y  T  T  P  K  I  N  N  S  V  D  A  I  F  D  K  F  Y  T  S  D  A  G  P  Y  W  E  S  P  R  K  L  V  D  E  K  Y  E  T  I  D  F  P  F  E  A  I  D  G  C  D  H  N  G  P  F  E  F  K  I  E  K  V  M  D  L  D  S  C  F  T  Y  L  K  S  W  S  A  Y  Q  T  A  K  E  K  G  V  E  L  L  S  E  D  V  V  E  K  F  T  S  A  W  N  E  D  G  K  S  E  K  K  V  I  Y  P  I  Y  L  R  I  G  K  V  G  N  L  D  *  K  C  K  A  N  T  I  S  Y  V  H  L  I  I  Y  L  F  C  M  L  F  L  L  V  V  I  V  M  Y  L  L  I  I  I  K  Y  L  S  T  N  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9309" stop="10001"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCFFYPNFLQKCCVPQLAKLYKNVIATDTSPKQLEFAAKVPNVQYICTSPKLSKSEIETKIGSESSVDLVTIAQAMHWFDLPTFYEHVKWLLKKPNGVIASWCYTTPKINNSVDAIFDKFYTSDAGPYWESPRKLVDEKYETIDFPFEAIDGCDHNGPFEFKIEKVMDLDSCFTYLKSWSAYQTAKEKGVELLSEDVVEKFTSAWNEDGKSEKKVIYPIYLRIGKVGNLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19898" PGL_stop="11047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19898" e_stop="19422"/>
            <exon e_start="13260" e_stop="13084"/>
            <exon e_start="12415" e_stop="12302"/>
            <exon e_start="11424" e_stop="11047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.201" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19898" e_stop="19422" e_length="477"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13260" e_stop="13084" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.201">
            <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12415" e_stop="12302" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11424" e_stop="11047" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19898" stop="19422"/>
              <exon start="13260" stop="13084"/>
              <exon start="12415" stop="12302"/>
              <exon start="11424" stop="11047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTATAATGGTAATATCTCAAAAGTACGAAAGTACAATGATAGCGGTATTAATGCCTAAAAAATATCCCGATGTACGATAGTTCGGCAGTATATACACTTTTTCCCTTTTAAAAGATATTCTTTTGGTAATTTTGACAGTTCGTAAAACCCCCAAAACCCCTCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG : GTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG : ATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAG : CTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTTTCAGTATCGAA</gDNA_template>
            <first_frame> K  V  *  W  *  Y  L  K  S  T  K  V  Q  *  *  R  Y  *  C  L  K  N  I  P  M  Y  D  S  S  A  V  Y  T  L  F  P  F  *  K  I  F  F  W  *  F  *  Q  F  V  K  P  P  K  P  L  E  R  T  *  L  K  N  Q  R  R  A  E  Q  R  K  M  D  L  N  G  L  A  M  D  V  D  G  E  N  L  G  T  C  L  A  S  F  V  D  D  G  T  V  E  S  H  R  Y  F  L  A  R  R  T  I  L  E  M  L  K  D  R  G  F  A  I  P  N  S  E  I  D  T  T  L  Q  E  F  R  E  K  Y  G  Q  T  P  D  V  E  R  L  R  V  S  A  M  H  R  N  D  L  T  N  K  :  V  L  V  I  F  C  G  P  N  A  V  K  V  N  V  I  R  S  I  L  T  Q  I  M  N  K  E  S  L  S  R  L  I  L  V  I  Q  N  Q  M  T  N  P  A  L  K  A  V  E  L  F  S  F  K  V  E  I  F  Q  :  I  T  D  L  L  V  N  I  T  K  H  V  L  K  P  R  H  E  L  L  T  D  T  E  K  E  K  L  L  K  K  Y  N  L  E  E  K  Q  :  L  P  R  M  S  Q  K  D  A  I  A  R  Y  Y  G  L  E  K  G  Q  V  V  K  V  T  Y  S  S  E  I  I  E  T  H  V  T  Y  R  C  V  W  *  C  N  Y  V  N  L  S  Y  V  Q  L  N  E  S  A  A  S  S  L  A  N  L  P  Y  L  V  L  L  P  T  C  Y  L  N  F  F  L  N  P  W  G  S  S  L  L  N  L  S  S  N  E  E  L  V  G  I  *  Y  T  I  L  V  T  P  F  K  F  L  F  G  K  R  N  *  S  K  L  N  F  F  F  S  I  E </first_frame>
            <second_frame>  K  Y  N  G  N  I  S  K  V  R  K  Y  N  D  S  G  I  N  A  *  K  I  S  R  C  T  I  V  R  Q  Y  I  H  F  F  P  F  K  R  Y  S  F  G  N  F  D  S  S  *  N  P  Q  N  P  S  N  E  R  S  *  K  I  K  E  E  Q  S  R  G  R  W  I  L  M  G  *  R  W  M  L  M  A  K  I  W  V  L  V  *  L  A  L  L  M  M  V  Q  L  K  V  T  D  T  F  L  L  A  E  P  Y  S  K  C  L  K  I  V  V  L  Q  Y  P  I  Q  K  S  T  L  H  F  K  N  S  E  K  N  M  V  K  H  L  M  L  S  A  L  E  F  P  Q  C  T  G  M  T  *  P  I  R :   F  W  S  S  S  A  G  Q  M  P  *  K  *  M  S  S  A  A  F  *  L  R  *  *  T  R  N  L  *  V  D  *  Y  W  S  F  K  I  K  *  L  I  Q  L  *  K  L  W  S  F  S  H  L  K  L  K  F  S  R :   S  Q  I  Y  L  S  I  S  Q  N  M  F  *  S  Q  G  M  S  C  *  P  T  L  R  R  R  S  C  *  R  S  I  T  W  K  R  S  S :   C  H  G  C  L  R  R  M  Q  L  L  G  T  M  D  L  R  R  G  R  *  *  R  S  R  T  A  V  K  S  S  R  H  M  L  L  I  A  V  S  G  D  A  T  M  *  I  Y  P  M  Y  N  *  M  S  L  Q  Q  A  A  *  L  T  Y  H  I  L  F  C  Y  Q  H  A  I  *  T  F  S  S  T  P  G  V  P  P  F  S  T  L  V  Q  M  K  S  L  *  V  F  S  T  L  F  L  S  L  H  L  N  S  C  S  A  R  G  I  N  R  N  *  I  F  F  S  V  S   </second_frame>
            <third_frame>   S  I  M  V  I  S  Q  K  Y  E  S  T  M  I  A  V  L  M  P  K  K  Y  P  D  V  R  *  F  G  S  I  Y  T  F  S  L  L  K  D  I  L  L  V  I  L  T  V  R  K  T  P  K  T  P  R  T  N  V  A  E  K  S  K  K  S  R  A  E  E  D  G  S  *  W  V  S  D  G  C  *  W  R  K  F  G  Y  L  F  S  *  L  C  *  *  W  Y  S  *  K  S  Q  I  L  S  C  S  Q  N  H  T  R  N  A  *  R  S  W  F  C  N  T  Q  F  R  N  R  H  Y  T  S  R  I  Q  R  K  I  W  S  N  T  *  C  *  A  P  *  S  F  R  N  A  Q  E  *  P  N  Q  *   : G  F  G  H  L  L  R  A  K  C  R  E  S  E  C  H  P  Q  H  F  N  S  D  N  E  Q  G  I  F  E  S  T  D  I  G  H  S  K  S  N  D  *  S  S  F  E  S  C  G  A  F  L  I  *  S  *  N  F  P   : D  H  R  F  T  C  Q  Y  H  K  T  C  F  K  A  K  A  *  V  V  N  R  H  *  E  G  E  A  V  E  E  V  *  L  G  R  E  A   : A  A  T  D  V  S  E  G  C  N  C  S  V  L  W  T  *  E  G  A  G  S  E  G  H  V  Q  Q  *  N  H  R  D  T  C  Y  L  S  L  C  L  V  M  Q  L  C  K  S  I  L  C  T  I  K  *  V  C  S  K  Q  P  S  *  L  T  I  S  C  S  V  T  N  M  L  F  E  L  F  P  Q  P  L  G  F  L  P  S  Q  P  *  F  K  *  R  A  C  R  Y  L  V  H  Y  S  C  H  S  I  *  I  L  V  R  Q  E  E  L  I  E  I  K  F  F  F  Q  Y  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19721" stop="19422"/>
                    <exon start="13260" stop="13084"/>
                    <exon start="12415" stop="12302"/>
                    <exon start="11424" stop="11299"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNQRRAEQRKMDLNGLAMDVDGENLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11927" e_stop="11058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="11927" e_stop="11058" e_length="870"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="11058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTT</gDNA_template>
            <first_frame> A  F  *  A  N  T  *  N  S  F  A  Y  S  V  V  L  K  E  V  N  N  R  S  L  L  I  L  I  L  V  I  *  C  C  R  P  V  L  V  T  S  L  D  Y  C  L  K  K  C  F  M  F  V  I  I  P  L  L  *  G  *  N  D  L  N  A  V  L  K  L  L  V  *  V  L  I  D  C  C  L  F  K  F  D  E  W  E  A  L  L  A  L  S  L  S  H  Y  L  S  E  S  I  C  R  T  L  L  V  E  T  G  F  R  V  H  L  M  L  I  N  G  I  V  A  D  H  S  L  Q  Q  K  S  I  V  H  K  A  I  Y  A  L  Q  C  T  T  L  F  F  K  H  Y  Q  C  S  S  F  C  L  S  I  V  I  V  L  M  F  S  S  C  H  G  C  L  R  R  M  Q  L  L  G  T  M  D  L  R  R  G  R  *  *  R  S  R  T  A  V  K  S  S  R  H  M  L  L  I  A  V  S  G  D  A  T  M  *  I  Y  P  M  Y  N  *  M  S  L  Q  Q  A  A  *  L  T  Y  H  I  L  F  C  Y  Q  H  A  I  *  T  F  S  S  T  P  G  V  P  P  F  S  T  L  V  Q  M  K  S  L  *  V  F  S  T  L  F  L  S  L  H  L  N  S  C  S  A  R  G  I  N  R  N  *  I  F  F </first_frame>
            <second_frame>  H  F  E  P  I  P  R  T  L  L  H  I  V  L  S  *  R  R  L  I  T  G  A  F  *  Y  L  S  W  *  F  N  V  V  D  Q  C  W  *  L  L  W  I  T  V  *  K  N  A  L  C  L  S  L  S  L  Y  C  E  G  E  M  T  *  M  L  F  *  N  F  *  F  R  Y  L  *  I  A  A  F  L  N  L  M  N  G  K  H  Y  L  P  Y  L  S  H  T  T  Y  Q  N  Q  Y  V  G  P  Y  L  *  R  Q  V  S  A  F  I  L  C  L  S  M  V  L  L  L  I  T  L  S  S  R  N  P  *  F  T  R  L  Y  M  H  F  N  V  P  L  F  S  S  N  I  I  N  A  V  H  F  V  *  V  L  L  L  Y  *  C  F  P  A  A  T  D  V  S  E  G  C  N  C  S  V  L  W  T  *  E  G  A  G  S  E  G  H  V  Q  Q  *  N  H  R  D  T  C  Y  L  S  L  C  L  V  M  Q  L  C  K  S  I  L  C  T  I  K  *  V  C  S  K  Q  P  S  *  L  T  I  S  C  S  V  T  N  M  L  F  E  L  F  P  Q  P  L  G  F  L  P  S  Q  P  *  F  K  *  R  A  C  R  Y  L  V  H  Y  S  C  H  S  I  *  I  L  V  R  Q  E  E  L  I  E  I  K  F  F   </second_frame>
            <third_frame>   I  L  S  Q  Y  L  E  L  F  C  I  *  C  C  L  E  G  G  *  *  Q  E  P  S  N  T  Y  L  G  N  L  M  L  *  T  S  V  G  D  F  S  G  L  L  F  K  K  M  L  Y  V  C  H  Y  P  F  T  V  R  V  K  *  L  K  C  C  S  K  T  F  S  L  G  T  Y  R  L  L  P  F  *  I  *  *  M  G  S  I  T  C  P  I  S  L  T  L  L  I  R  I  N  M  *  D  L  T  C  R  D  R  F  P  R  S  S  Y  A  Y  Q  W  Y  C  C  *  S  L  S  P  A  E  I  H  S  S  Q  G  Y  I  C  T  S  M  Y  H  S  F  L  Q  T  L  S  M  Q  F  I  L  S  E  Y  C  Y  C  I  D  V  F  Q  L  P  R  M  S  Q  K  D  A  I  A  R  Y  Y  G  L  E  K  G  Q  V  V  K  V  T  Y  S  S  E  I  I  E  T  H  V  T  Y  R  C  V  W  *  C  N  Y  V  N  L  S  Y  V  Q  L  N  E  S  A  A  S  S  L  A  N  L  P  Y  L  V  L  L  P  T  C  Y  L  N  F  F  L  N  P  W  G  S  S  L  L  N  L  S  S  N  E  E  L  V  G  I  *  Y  T  I  L  V  T  P  F  K  F  L  F  G  K  R  N  *  S  K  L  N  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11708" stop="11361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLIDCCLFKFDEWEALLALSLSHYLSESICRTLLVETGFRVHLMLINGIVADHSLQQKSIVHKAIYALQCTTLFFKHYQCSSFCLSIVIVLMFSSCHGCLRRMQLLGTMDLRRGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22257" PGL_stop="27370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22257" e_stop="23114"/>
            <exon e_start="24395" e_stop="24582"/>
            <exon e_start="25035" e_stop="25124"/>
            <exon e_start="25219" e_stop="25405"/>
            <exon e_start="25493" e_stop="25690"/>
            <exon e_start="26693" e_stop="26880"/>
            <exon e_start="27034" e_stop="27370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22257" e_stop="23114" e_length="858"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="24395" e_stop="24582" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.820" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24583" i_stop="25034" i_length="452"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25035" e_stop="25124" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25125" i_stop="25218" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25219" e_stop="25405" e_length="187"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="25406" i_stop="25492" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25493" e_stop="25690" e_length="198"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26693" e_stop="26880" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27034" e_stop="27370" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22257" stop="23114"/>
              <exon start="24395" stop="24536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24525" stop="24582"/>
              <exon start="25035" stop="25124"/>
              <exon start="25219" stop="25405"/>
              <exon start="25493" stop="25690"/>
              <exon start="26693" stop="26880"/>
              <exon start="27034" stop="27370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATTCTTGGCTCTCCTCTTTGTTTCTTCCGCATGGGCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG : GTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGCCTCCCTATATACCTGAACTTGATGACAGTTCGTTTTCGAAAACTTTCATAGTCAGAGATATATCATATGG : GTATGAGCTTCTGATTGAAAACCTTATGGACCCAGCTCATGTCCAATATTCACATTATGGCATTATGAATGTTCCAGTAGCCCCCCAAAG : TGTGAAAGCTGATCGAGAAGGAGGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAG : GAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG : GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG : GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</gDNA_template>
            <first_frame> *  N  S  W  L  S  S  L  F  L  P  H  G  L  M  A  S  G  L  A  R  T  Y  T  N  V  W  S  I  N  L  R  I  L  T  I  S  F  Y  L  F  F  *  K  *  I  L  S  I  N  *  L  *  K  M  T  Q  P  M  C  L  L  Y  I  *  K  P  Q  N  T  F  L  V  L  S  V  T  T  F  I  L  Y  L  H  F  N  G  V  L  K  I  F  Y  F  Y  F  L  K  E  D  L  N  F  Y  *  Q  I  *  D  S  A  M  Q  A  V  K  A  S  S  F  S  P  F  H  L  N  L  N  S  T  S  S  F  P  K  T  T  N  L  Y  I  Q  Q  N  Y  E  N  P  I  S  C  F  P  S  I  Q  T  Q  N  A  K  F  K  V  F  T  A  T  S  P  S  V  S  T  E  S  E  T  P  F  D  E  K  T  E  N  E  N  Q  E  E  K  F  E  W  Y  A  E  W  Y  P  I  M  P  I  C  D  L  D  K  R  R  P  H  G  K  K  V  M  G  I  D  V  V  V  W  W  D  R  N  E  K  E  W  K  V  M  D  D  S  C  P  H  R  Y  A  P  L  S  E  G  R  I  D  Q  W  G  R  L  Q  C  V  Y  H  G  W  C  F  N  G  A  G  D  C  K  L  I  P  Q  A  P  R  D  G  P  Q  :  V  H  T  S  K  R  A  C  A  T  V  Y  P  S  C  V  Q  N  D  I  L  W  F  W  P  N  S  D  P  L  Y  K  D  I  Y  L  M  K  R  P  P  Y  I  P  E  L  D  D  S  S  F  S  K  T  F  I  V  R  D  I  S  Y  G :   Y  E  L  L  I  E  N  L  M  D  P  A  H  V  Q  Y  S  H  Y  G  I  M  N  V  P  V  A  P  Q  S :   V  K  A  D  R  E  G  G  R  P  L  D  I  T  I  T  K  L  D  V  N  V  I  T  A  N  Q  G  P  G  R  N  T  F  V  P  P  C  V  Y  Y  S  Y  F  A  F  G  G  S  Q  G  K  T  T  A  V  S  S  G  T  V  Q  :  E  K  P  S  A  E  K  Q  K  K  A  L  L  V  F  I  C  I  P  V  S  P  G  H  S  R  I  I  F  A  S  P  R  N  F  A  T  W  A  D  R  I  I  P  R  W  I  F  H  L  G  Q  N  L  I  L  D  S  D  L  Y  L  L  H  V  E  :  E  R  K  L  K  E  I  G  S  Y  N  W  H  K  A  C  Y  V  P  T  K  A  D  A  I  V  V  A  F  R  R  W  L  N  K  Y  A  G  G  Q  V  D  W  R  G  K  Y  N  G  D  L  P  P  T  P  P  R  E  Q  L  L  D  R :   Y  W  T  H  T  V  S  C  T  S  C  N  L  A  Y  K  S  L  N  A  L  E  V  V  L  Q  I  V  S  I  G  A  I  G  I  V  A  A  L  K  Q  G  T  L  S  A  V  T  R  Y  S  L  V  T  V  A  L  L  C  F  V  A  S  R  W  L  S  H  F  I  Y  K  N  F  H  F  H  D  Y  D  H  A  F  R  *  H  L  S  T  F  I  *  L  N  I  H  C  I  N  I  F  L  V  V  E  I  C  R  K  V  C  * </first_frame>
            <second_frame>  E  I  L  G  S  P  L  C  F  F  R  M  G  S  W  P  V  A  *  Q  G  H  T  Q  M  C  G  L  S  I  F  V  F  *  L  F  L  F  T  F  S  F  K  N  K  F  C  P  *  I  N  C  R  R  *  H  N  Q  C  V  C  C  I  S  E  S  H  K  T  L  F  *  F  Y  Q  S  P  L  L  F  C  I  C  I  L  M  E  F  *  R  F  F  I  F  I  F  *  K  K  I  *  T  F  I  N  K  F  K  I  Q  P  C  K  L  S  K  L  L  P  F  H  H  F  T  S  T  *  T  Q  P  V  H  F  P  K  L  P  T  C  I  F  N  K  I  M  K  T  P  F  L  V  F  P  Q  F  R  H  K  M  Q  N  S  R  F  L  L  L  L  P  Q  V  F  Q  Q  N  Q  K  P  H  L  M  K  R  L  K  M  K  I  K  K  R  N  L  S  G  M  L  S  G  T  Q  *  C  Q  F  V  I  L  I  R  G  G  H  M  E  R  K  *  W  G  L  M  W  L  C  G  G  I  G  M  R  K  N  G  K  *  W  M  I  L  V  L  I  D  M  L  H  F  L  K  E  E  L  I  N  G  E  D  C  S  V  C  I  M  V  G  A  L  M  E  L  V  I  V  S  *  S  L  K  L  L  G  M  A  L  R :   F  I  R  P  K  E  L  A  Q  L  F  I  Q  V  V  C  K  M  T  F  F  G  F  G  R  T  L  I  L  Y  T  R  T  Y  I  *  *  K  G  L  P  I  Y  L  N  L  M  T  V  R  F  R  K  L  S  *  S  E  I  Y  H  M   : G  M  S  F  *  L  K  T  L  W  T  Q  L  M  S  N  I  H  I  M  A  L  *  M  F  Q  *  P  P  K   : V  *  K  L  I  E  K  E  E  D  H  L  T  *  L  S  R  S  W  M  *  M  S  L  L  Q  T  R  D  L  D  G  T  H  L  F  R  L  V  C  I  I  V  I  L  L  S  E  D  L  R  E  K  Q  L  L  Y  H  L  E  L  Y  R :   K  N  L  Q  L  R  S  R  K  K  H  F  *  F  S  S  V  F  R  L  V  Q  V  I  A  E  L  Y  L  H  L  Q  E  T  L  P  L  G  Q  I  E  *  F  H  V  G  Y  F  T  W  D  K  I  *  F  W  I  L  I  C  I  F  F  M  W  R :   S  A  S  *  R  K  L  A  L  T  I  G  I  K  L  A  M  C  Q  Q  R  Q  M  P  L  L  L  L  L  E  G  G  *  T  N  M  Q  V  V  K  L  I  G  V  E  S  T  M  E  T  S  R  Q  L  L  Q  G  S  S  C  W  T   : G  I  G  L  I  Q  *  V  A  Q  V  A  I  S  H  I  K  V  S  M  L  L  K  S  Y  C  R  S  S  P  L  V  P  L  E  L  L  L  L  *  S  R  A  H  C  L  R  *  Q  G  I  P  W  S  P  L  H  Y  Y  A  S  W  P  R  D  G  Y  L  I  S  Y  T  K  I  S  I  S  T  I  T  T  M  P  F  V  N  T  *  V  L  S  Y  D  *  T  F  T  V  *  T  Y  S  L  *  L  K  F  A  E  K  F  V   </second_frame>
            <third_frame>   K  F  L  A  L  L  F  V  S  S  A  W  A  H  G  Q  W  P  S  K  D  I  H  K  C  V  V  Y  Q  S  S  Y  F  D  Y  F  F  L  P  F  L  L  K  I  N  S  V  H  K  L  I  V  E  D  D  T  T  N  V  F  V  V  Y  L  K  A  T  K  H  F  S  S  F  I  S  H  H  F  Y  S  V  F  A  F  *  W  S  S  E  D  F  L  F  L  F  F  K  R  R  F  E  L  L  L  T  N  L  R  F  S  H  A  S  C  Q  S  F  F  L  F  T  I  S  P  Q  L  E  L  N  Q  F  I  S  Q  N  Y  Q  L  V  Y  S  T  K  L  *  K  P  H  F  L  F  S  L  N  S  D  T  K  C  K  I  Q  G  F  Y  C  Y  F  P  K  C  F  N  R  I  R  N  P  I  *  *  K  D  *  K  *  K  S  R  R  E  I  *  V  V  C  *  V  V  P  N  N  A  N  L  *  S  *  *  E  E  A  T  W  K  E  S  D  G  D  *  C  G  C  V  V  G  *  E  *  E  R  M  E  S  N  G  *  F  L  S  S  *  I  C  S  T  F  *  R  K  N  *  S  M  G  K  I  A  V  C  V  S  W  L  V  L  *  W  S  W  *  L  *  V  D  P  S  S  S  *  G  W  P  S   : G  S  Y  V  Q  K  S  L  R  N  C  L  S  K  L  C  A  K  *  H  S  L  V  L  A  E  L  *  S  S  I  Q  G  H  I  F  D  E  K  A  S  L  Y  T  *  T  *  *  Q  F  V  F  E  N  F  H  S  Q  R  Y  I  I  W  :  V  *  A  S  D  *  K  P  Y  G  P  S  S  C  P  I  F  T  L  W  H  Y  E  C  S  S  S  P  P  K  :  C  E  S  *  S  R  R  R  K  T  T  *  H  N  Y  H  E  V  G  C  K  C  H  Y  C  K  P  G  T  W  T  E  H  I  C  S  A  L  C  V  L  *  L  F  C  F  R  R  I  S  G  K  N  N  C  C  I  I  W  N  C  T   : G  K  T  F  S  *  E  A  E  K  S  T  F  S  F  H  L  Y  S  G  *  S  R  S  *  Q  N  Y  I  C  I  S  K  K  L  C  H  L  G  R  S  N  N  S  T  L  D  I  S  P  G  T  K  S  N  S  G  F  *  F  V  S  S  S  C  G   : G  A  Q  A  K  G  N  W  L  L  Q  L  A  *  S  L  L  C  A  N  K  G  R  C  H  C  C  C  F  *  K  V  A  K  Q  I  C  R  W  S  S  *  L  A  W  K  V  Q  W  R  P  P  A  N  S  S  K  G  A  A  A  G  Q  :  V  L  D  S  Y  S  E  L  H  K  L  Q  S  R  I  *  K  S  Q  C  S  *  S  R  T  A  D  R  L  H  W  C  H  W  N  C  C  C  F  K  A  G  H  I  V  C  G  D  K  V  F  L  G  H  R  C  I  T  M  L  R  G  L  E  M  V  I  S  F  H  I  Q  K  F  P  F  P  R  L  R  P  C  L  S  L  T  L  E  Y  F  H  M  T  E  H  S  L  Y  K  H  I  P  C  S  *  N  L  Q  K  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22581" stop="23114"/>
                    <exon start="24395" stop="24582"/>
                    <exon start="25035" stop="25124"/>
                    <exon start="25219" stop="25405"/>
                    <exon start="25493" stop="25690"/>
                    <exon start="26693" stop="26880"/>
                    <exon start="27034" stop="27289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1638</number_coding_nucleotides>
                  <number_encoded_amino_acids>546</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSAMQAVKASSFSPFHLNLNSTSSFPKTTNLYIQQNYENPISCFPSIQTQNAKFKVFTATSPSVSTESETPFDEKTENENQEEKFEWYAEWYPIMPICDLDKRRPHGKKVMGIDVVVWWDRNEKEWKVMDDSCPHRYAPLSEGRIDQWGRLQCVYHGWCFNGAGDCKLIPQAPRDGPQVHTSKRACATVYPSCVQNDILWFWPNSDPLYKDIYLMKRPPYIPELDDSSFSKTFIVRDISYGYELLIENLMDPAHVQYSHYGIMNVPVAPQSVKADREGGRPLDITITKLDVNVITANQGPGRNTFVPPCVYYSYFAFGGSQGKTTAVSSGTVQEKPSAEKQKKALLVFICIPVSPGHSRIIFASPRNFATWADRIIPRWIFHLGQNLILDSDLYLLHVEERKLKEIGSYNWHKACYVPTKADAIVVAFRRWLNKYAGGQVDWRGKYNGDLPPTPPREQLLDRYWTHTVSCTSCNLAYKSLNALEVVLQIVSIGAIGIVAALKQGTLSAVTRYSLVTVALLCFVASRWLSHFIYKNFHFHDYDHAFR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22259" stop="22513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLALLFVSSAWAHGQWPSKDIHKCVVYQSSYFDYFFLPFLLKINSVHKLIVEDDTTNVFVVYLKATKHFSSFISHHFYSVFAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="78304" PGL_stop="77579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78304" e_stop="77579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="78304" e_stop="77579" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78304" stop="77819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77878" stop="77579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCAGCCACCCCCGAATCACCACCGCTCGTGTCACCCCCCAATACTCATCCCATGTTAACCCGTTGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACGCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGACACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTTCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGCAAGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  S  I  P  T  T  S  P  A  R  S  V  L  G  P  S  Q  P  P  P  N  H  H  R  S  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  A  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  D  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  S  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  A  R  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  S  H  P  R  I  T  T  A  R  V  T  P  Q  Y  S  S  H  V  N  P  L  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  T  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  L  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  P  P  L  V  S  P  P  N  T  H  P  M  L  T  R  C  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  R  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  F  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  K  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78302" stop="77694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPLHTHNISSPIRFGSFPATPESPPLVSPPNTHPMLTRCKAGIFKPKTFQATILPNTRLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSIFRYKARLVAKGYNQEYGLDYSETFSPVIRKKPFAWYCHSPCATIGSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="84050" PGL_stop="85345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84050" e_stop="85345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="84050" e_stop="85345" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84050" stop="85345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATCACAAACCAAAATGGGAGGTGGTGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATCCAAGCCCCCTTTTATACTTAGTGAACTCAAGAAGGCTATTCCTCCTCATTGCTTTCAACGATCTCTCGTTCGCTCCTTTTCCTACGTTGTTCGGGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCTCCATATAATTACCTAGGATGGCCTATTTATTGGTTTTCCCTAGGAAGTGTTTTCACAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAATCACTCTGTCC</gDNA_template>
            <first_frame> L  S  Q  T  K  M  G  G  G  G  N  M  T  K  I  E  Q  K  I  K  V  P  L  S  K  P  P  F  I  L  S  E  L  K  K  A  I  P  P  H  C  F  Q  R  S  L  V  R  S  F  S  Y  V  V  R  D  I  T  L  V  F  V  L  G  Y  I  A  A  N  Y  I  Y  V  L  P  S  P  Y  N  Y  L  G  W  P  I  Y  W  F  S  L  G  S  V  F  T  A  M  W  V  I  A  H  E  C  G  H  H  G  F  S  N  Y  Q  W  I  D  D  T  V  G  F  I  F  Y  T  S  I  C  V  P  Y  F  S  W  K  Y  S  H  R  R  H  H  S  N  A  G  S  L  E  Y  D  E  V  Y  V  P  R  L  K  S  E  L  R  W  F  S  K  Y  F  D  N  L  P  G  R  I  I  A  F  T  T  T  L  T  V  G  W  P  S  Y  M  A  I  N  A  S  G  R  P  Y  D  R  F  A  S  H  Y  N  P  Y  S  P  M  Y  N  N  R  E  R  L  L  I  Y  F  S  D  L  G  L  I  A  F  I  Y  M  W  Y  R  I  A  M  V  K  G  L  A  W  V  V  C  M  Y  V  A  P  L  E  I  M  N  I  L  V  V  V  L  T  F  L  N  H  T  H  A  L  V  P  H  Y  D  S  S  E  W  D  W  L  R  G  A  L  A  T  V  D  R  D  F  G  P  L  N  N  I  C  H  N  V  T  N  T  H  V  L  H  H  L  F  T  T  I  P  H  Y  H  A  V  E  A  T  K  A  I  K  P  I  L  G  D  Y  Y  N  F  D  S  T  P  V  Y  K  A  I  W  K  N  I  N  E  C  I  Y  V  E  K  N  E  E  T  Q  D  R  G  V  F  W  Y  K  N  K  L  *  K  M  N  V  S  I  *  L  L  L  V  I  W  L  N  V  K  P  *  *  F  V  M  V  *  L  R  F  T  Y  S  L  *  *  L  D  C  C  I  *  K  S  P  *  *  I  I  I  T  L  S </first_frame>
            <second_frame>  Y  H  K  P  K  W  E  V  V  V  I  *  L  K  L  N  K  R  L  K  Y  H  Y  P  S  P  L  L  Y  L  V  N  S  R  R  L  F  L  L  I  A  F  N  D  L  S  F  A  P  F  P  T  L  F  G  I  S  H  *  C  L  Y  *  G  I  S  L  R  I  T  S  M  S  F  H  L  H  I  I  T  *  D  G  L  F  I  G  F  P  *  E  V  F  S  Q  Q  C  G  S  L  L  M  N  V  A  I  M  A  L  V  I  T  N  G  *  M  T  R  L  V  L  S  S  I  P  Q  F  V  S  L  T  F  L  G  N  T  V  I  V  V  I  T  P  M  Q  V  R  L  N  M  M  K  S  T  Y  L  G  L  N  P  N  Y  V  G  S  L  N  I  S  T  I  Y  Q  D  E  *  S  R  S  P  P  P  S  R  L  V  G  L  L  T  W  P  S  M  P  P  V  D  L  M  I  V  L  Q  V  T  I  I  H  I  V  Q  C  I  T  I  V  R  G  Y  L  S  T  S  Q  T  *  V  *  L  H  L  F  I  C  G  I  V  S  R  W  *  K  G  *  L  G  L  Y  V  C  M  *  H  P  L  K  L  *  T  Y  *  *  W  Y  *  L  F  *  T  T  H  M  H  *  S  H  I  M  I  L  Q  N  G  I  G  *  E  E  L  *  L  L  *  I  E  T  L  V  H  *  I  I  Y  V  I  M  L  Q  I  L  M  F  C  I  I  Y  S  Q  P  Y  H  I  I  M  Q  W  R  Q  Q  K  L  S  S  Q  Y  L  E  I  T  I  I  L  I  V  H  Q  F  I  K  Q  Y  G  R  I  *  M  S  V  S  M  W  R  K  M  K  K  L  K  I  E  V  F  F  G  I  K  T  N  S  K  R  *  M  *  A  F  N  Y  Y  L  *  F  G  *  M  L  S  L  N  N  L  L  W  F  N  *  G  L  L  I  A  C  N  N  W  I  V  A  F  R  N  L  P  N  K  S  *  S  L  C   </second_frame>
            <third_frame>   I  T  N  Q  N  G  R  W  W  *  Y  D  *  N  *  T  K  D  *  S  T  T  I  Q  A  P  F  Y  T  *  *  T  Q  E  G  Y  S  S  S  L  L  S  T  I  S  R  S  L  L  F  L  R  C  S  G  Y  H  T  S  V  C  I  R  V  Y  R  C  E  L  H  L  C  P  S  I  S  I  *  L  P  R  M  A  Y  L  L  V  F  P  R  K  C  F  H  S  N  V  G  H  C  S  *  M  W  P  S  W  L  *  *  L  P  M  D  R  *  H  G  W  F  Y  L  L  Y  L  N  L  C  P  L  L  F  L  E  I  Q  S  S  S  S  S  L  Q  C  R  F  A  *  I  *  *  S  L  R  T  *  A  *  I  R  I  T  L  V  L  *  I  F  R  Q  S  T  R  T  N  N  R  V  H  H  H  P  H  G  W  L  A  F  L  H  G  H  Q  C  L  R  *  T  L  *  S  F  C  K  S  L  *  S  I  *  S  N  V  *  Q  S  *  E  A  T  Y  L  L  L  R  L  R  S  N  C  I  Y  L  Y  V  V  S  Y  R  D  G  K  R  A  S  L  G  C  M  Y  V  C  S  T  P  *  N  Y  E  H  T  S  S  G  T  N  F  F  E  P  H  T  C  I  S  P  T  L  *  F  F  R  M  G  L  A  K  R  S  F  S  Y  C  R  *  R  L  W  S  T  K  *  Y  M  S  *  C  Y  K  Y  S  C  F  A  S  F  I  H  N  H  T  T  L  S  C  S  G  G  N  K  S  Y  Q  A  N  T  W  R  L  L  *  F  *  *  Y  T  S  L  *  S  N  M  E  E  Y  K  *  V  Y  L  C  G  E  K  *  R  N  S  R  *  R  C  F  L  V  *  K  Q  T  L  K  D  E  C  K  H  L  I  I  T  C  N  L  A  K  C  *  A  L  I  I  C  Y  G  L  I  K  V  Y  L  *  L  V  I  I  G  L  L  H  L  E  I  S  L  I  N  H  N  H  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84050" stop="85192"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSQTKMGGGGNMTKIEQKIKVPLSKPPFILSELKKAIPPHCFQRSLVRSFSYVVRDITLVFVLGYIAANYIYVLPSPYNYLGWPIYWFSLGSVFTAMWVIAHECGHHGFSNYQWIDDTVGFIFYTSICVPYFSWKYSHRRHHSNAGSLEYDEVYVPRLKSELRWFSKYFDNLPGRIIAFTTTLTVGWPSYMAINASGRPYDRFASHYNPYSPMYNNRERLLIYFSDLGLIAFIYMWYRIAMVKGLAWVVCMYVAPLEIMNILVVVLTFLNHTHALVPHYDSSEWDWLRGALATVDRDFGPLNNICHNVTNTHVLHHLFTTIPHYHAVEATKAIKPILGDYYNFDSTPVYKAIWKNINECIYVEKNEETQDRGVFWYKNKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="92916" PGL_stop="93404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92916" e_stop="93404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92916" e_stop="93404" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92916" stop="93404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATTAAAGCCCCCTTTTAAACTTAGTGAACTCAAGAAGGCTATTCCTCCTCACTGCTTTCAACGATCTCTCGTTCGCTCCTTCTCCTACGTTGTTCGTGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCCCCATATTATTACCTAGCATGGCCTATTTATTGGTTTGCTCTAGGTAGTGCTTTCACAGGAATATGGGTCCTTGCTCATGAATGTGGCCACCATGGCTTTAGTAATTATCAATGGATAGATGACACGGTTGGTTTTATCTTATATACCTCGATTTGTGTGCCTTACTTTTCTTGGAAACGTACTCATCATCGTCATCACTCCAATACTGGTTCCCTTGAATATGATGAAGTCTATGTACCTAGGCTTAAATCCGAACTACAATGGTTCTCCAAATATTTCAACAATCT</gDNA_template>
            <first_frame> W  *  Y  D  *  N  *  T  K  D  *  S  T  T  I  K  A  P  F  *  T  *  *  T  Q  E  G  Y  S  S  S  L  L  S  T  I  S  R  S  L  L  L  L  R  C  S  *  Y  H  T  S  V  C  I  R  V  Y  R  C  E  L  H  L  C  P  S  I  P  I  L  L  P  S  M  A  Y  L  L  V  C  S  R  *  C  F  H  R  N  M  G  P  C  S  *  M  W  P  P  W  L  *  *  L  S  M  D  R  *  H  G  W  F  Y  L  I  Y  L  D  L  C  A  L  L  F  L  E  T  Y  S  S  S  S  S  L  Q  Y  W  F  P  *  I  *  *  S  L  C  T  *  A  *  I  R  T  T  M  V  L  Q  I  F  Q  Q  S </first_frame>
            <second_frame>  G  N  M  T  K  I  E  Q  K  I  K  V  P  L  L  K  P  P  F  K  L  S  E  L  K  K  A  I  P  P  H  C  F  Q  R  S  L  V  R  S  F  S  Y  V  V  R  D  I  T  L  V  F  V  L  G  Y  I  A  A  N  Y  I  Y  V  L  P  S  P  Y  Y  Y  L  A  W  P  I  Y  W  F  A  L  G  S  A  F  T  G  I  W  V  L  A  H  E  C  G  H  H  G  F  S  N  Y  Q  W  I  D  D  T  V  G  F  I  L  Y  T  S  I  C  V  P  Y  F  S  W  K  R  T  H  H  R  H  H  S  N  T  G  S  L  E  Y  D  E  V  Y  V  P  R  L  K  S  E  L  Q  W  F  S  K  Y  F  N  N   </second_frame>
            <third_frame>   V  I  *  L  K  L  N  K  R  L  K  Y  H  Y  *  S  P  L  L  N  L  V  N  S  R  R  L  F  L  L  T  A  F  N  D  L  S  F  A  P  S  P  T  L  F  V  I  S  H  *  C  L  Y  *  G  I  S  L  R  I  T  S  M  S  F  H  P  H  I  I  T  *  H  G  L  F  I  G  L  L  *  V  V  L  S  Q  E  Y  G  S  L  L  M  N  V  A  T  M  A  L  V  I  I  N  G  *  M  T  R  L  V  L  S  Y  I  P  R  F  V  C  L  T  F  L  G  N  V  L  I  I  V  I  T  P  I  L  V  P  L  N  M  M  K  S  M  Y  L  G  L  N  P  N  Y  N  G  S  P  N  I  S  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92917" stop="93402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNMTKIEQKIKVPLLKPPFKLSELKKAIPPHCFQRSLVRSFSYVVRDITLVFVLGYIAANYIYVLPSPYYYLAWPIYWFALGSAFTGIWVLAHECGHHGFSNYQWIDDTVGFILYTSICVPYFSWKRTHHRHHSNTGSLEYDEVYVPRLKSELQWFSKYFNN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="106313" PGL_stop="104463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106313" e_stop="106184"/>
            <exon e_start="106099" e_stop="105911"/>
            <exon e_start="104624" e_stop="104463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.130" acc_prob="0.976" e_score="0.992"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="106313" e_stop="106184" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.130" acc_prob="0.976">
            <gDNA_intron_boundary i_start="106183" i_stop="106100" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106099" e_stop="105911" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105910" i_stop="104625" i_length="1286"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104624" e_stop="104463" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106313" stop="106184"/>
              <exon start="106099" stop="105911"/>
              <exon start="104624" stop="104463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCTTATCTTCTAGTTCTTTAGGCAGAGAGAAGGAAAACATTAGAAAAGATTTGGAGAAAACAAAAGCAAAGTTGAGAGACACAGAATCCAAACTTAGGAATGCCATCCAGGAGAAGACAAAACTTGAG : GGTGAAAGAGCTTGTGCTGAGAGGGAAATTAAACGCTTAAATGGCCAGAGGGCTATTCTTGAGCGTGACATCAATAAACGAGACTCAAATATTGGAAGAAGGCGTGATTCAGTCGTTGATAGGAGCTCTAATGTGCTCGACTCCAAAAGATCCAAGAATTCCTCTGTTTGTGTCGAACATGTTGTGCAG : GAGGAGTATCGGAAATTGGAAGTGCTGGCTTTTGAGATGGAGACAACAATTGCTTCTTTGGAAGAGGAATTAACAATTTCTCATGCAGAAAATGAAGAAGCCAATTCTAGAGCAGAAAATTTAGCATGTGAATTGCAAGCTTTATCTGACGAGTTGAATATG</gDNA_template>
            <first_frame> M  L  I  F  *  F  F  R  Q  R  E  G  K  H  *  K  R  F  G  E  N  K  S  K  V  E  R  H  R  I  Q  T  *  E  C  H  P  G  E  D  K  T  *   : G  *  K  S  L  C  *  E  G  N  *  T  L  K  W  P  E  G  Y  S  *  A  *  H  Q  *  T  R  L  K  Y  W  K  K  A  *  F  S  R  *  *  E  L  *  C  A  R  L  Q  K  I  Q  E  F  L  C  L  C  R  T  C  C  A   : G  G  V  S  E  I  G  S  A  G  F  *  D  G  D  N  N  C  F  F  G  R  G  I  N  N  F  S  C  R  K  *  R  S  Q  F  *  S  R  K  F  S  M  *  I  A  S  F  I  *  R  V  E  Y  </first_frame>
            <second_frame>  C  L  S  S  S  S  L  G  R  E  K  E  N  I  R  K  D  L  E  K  T  K  A  K  L  R  D  T  E  S  K  L  R  N  A  I  Q  E  K  T  K  L  E  :  G  E  R  A  C  A  E  R  E  I  K  R  L  N  G  Q  R  A  I  L  E  R  D  I  N  K  R  D  S  N  I  G  R  R  R  D  S  V  V  D  R  S  S  N  V  L  D  S  K  R  S  K  N  S  S  V  C  V  E  H  V  V  Q  :  E  E  Y  R  K  L  E  V  L  A  F  E  M  E  T  T  I  A  S  L  E  E  E  L  T  I  S  H  A  E  N  E  E  A  N  S  R  A  E  N  L  A  C  E  L  Q  A  L  S  D  E  L  N  M </second_frame>
            <third_frame>   A  Y  L  L  V  L  *  A  E  R  R  K  T  L  E  K  I  W  R  K  Q  K  Q  S  *  E  T  Q  N  P  N  L  G  M  P  S  R  R  R  Q  N  L  R :   V  K  E  L  V  L  R  G  K  L  N  A  *  M  A  R  G  L  F  L  S  V  T  S  I  N  E  T  Q  I  L  E  E  G  V  I  Q  S  L  I  G  A  L  M  C  S  T  P  K  D  P  R  I  P  L  F  V  S  N  M  L  C  R :   R  S  I  G  N  W  K  C  W  L  L  R  W  R  Q  Q  L  L  L  W  K  R  N  *  Q  F  L  M  Q  K  M  K  K  P  I  L  E  Q  K  I  *  H  V  N  C  K  L  Y  L  T  S  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106312" stop="106184"/>
                    <exon start="106099" stop="105911"/>
                    <exon start="104624" stop="104463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLSSSSLGREKENIRKDLEKTKAKLRDTESKLRNAIQEKTKLEGERACAEREIKRLNGQRAILERDINKRDSNIGRRRDSVVDRSSNVLDSKRSKNSSVCVEHVVQEEYRKLEVLAFEMETTIASLEEELTISHAENEEANSRAENLACELQALSDELNM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="131506" PGL_stop="132463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131506" e_stop="132463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="131506" e_stop="132463" e_length="958"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131506" stop="132463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGACTTCAAAAATTAGTCACCAAATATTATCTCAATTCTGAAGGCTTCTTTTCACTGGCTTCTCTTTCAAATCTGCACAGGTCATGCTTATTTTGATACTAGATTCTGAGAACGTGCCTTGCACGTTTGTCCCTTATTATTATTATATTAATTTTTTATATACTAAAAAGTTAAGGAATTAAAAATATGCTTAAATTAACAATAGTAGTTTAACCATTTATCTTTTATTCGCTAAATAATAACAAAT</gDNA_template>
            <first_frame> S  L  L  R  C  L  V  T  F  S  G  *  S  F  Q  S  L  A  L  F  S  L  S  I  L  F  I  I  S  S  L  L  L  Y  T  I  L  L  N  L  I  L  A  C  F  R  F  L  W  L  L  D  C  L  L  S  F  L  S  A  I  F  I  F  L  A  T  L  I  C  I  L  Y  I  F  *  D  H  I  N  S  I  H  N  C  Y  Q  L  K  *  L  S  S  S  F  S  A  E  K  L  N  A  Y  V  M  F  I  W  H  P  *  I  I  R  Q  N  V  L  *  R  H  I  A  Y  H  F  *  K  *  L  *  N  S  L  N  R  H  Y  T  S  K  M  F  E  K  L  P  L  R  G  T  L  S  T  A  C  E  N  *  L  M  D  F  K  I  H  S  T  S  I  I  S  G  L  L  S  P  V  F  L  L  S  N  L  G  K  P  C  L  F  S  C  P  *  S  V  K  K  K  S  S  S  S  T  L  T  M  V  L  E  I  A  Y  D  G  H  V  Y  F  G  I  H  E  V  F  E  T  M  S  Y  T  A  N  S  F  L  K  *  L  Q  K  L  V  T  K  Y  Y  L  N  S  E  G  F  F  S  L  A  S  L  S  N  L  H  R  S  C  L  F  *  Y  *  I  L  R  T  C  L  A  R  L  S  L  I  I  I  I  L  I  F  Y  I  L  K  S  *  G  I  K  N  M  L  K  L  T  I  V  V  *  P  F  I  F  Y  S  L  N  N  N  K  </first_frame>
            <second_frame>  L  Y  C  D  V  L  *  P  F  R  V  N  L  F  N  P  W  H  Y  L  V  S  L  Y  C  L  L  F  P  R  S  C  F  I  L  F  F  S  I  L  F  *  L  A  L  G  F  Y  G  Y  L  I  V  Y  F  L  S  S  V  Q  S  S  S  S  W  L  H  L  F  A  F  C  I  F  F  K  T  I  L  I  Q  Y  I  I  V  T  S  *  S  D  Y  Q  V  H  S  Q  R  K  N  *  M  P  M  S  C  L  F  G  T  H  K  L  F  D  K  M  S  C  R  G  T  L  P  T  T  S  E  N  S  F  E  I  H  S  I  G  I  I  L  L  K  C  L  K  N  C  P  *  E  A  H  C  Q  R  L  V  K  I  D  L  W  T  S  K  F  T  Q  Q  V  L  S  Q  G  F  F  L  L  F  F  Y  F  Q  I  W  A  N  H  A  Y  F  R  A  H  E  V  L  K  K  N  P  Q  A  A  H  *  Q  W  F  L  K  L  P  T  M  D  M  S  I  L  A  S  M  K  C  S  K  Q  C  R  T  L  P  T  A  S  *  N  D  F  K  N  *  S  P  N  I  I  S  I  L  K  A  S  F  H  W  L  L  F  Q  I  C  T  G  H  A  Y  F  D  T  R  F  *  E  R  A  L  H  V  C  P  L  L  L  L  Y  *  F  F  I  Y  *  K  V  K  E  L  K  I  C  L  N  *  Q  *  *  F  N  H  L  S  F  I  R  *  I  I  T  N </second_frame>
            <third_frame>   S  T  A  M  S  C  N  L  F  G  L  I  F  S  I  L  G  I  I  *  S  L  Y  I  V  Y  Y  F  L  A  L  A  L  Y  Y  S  S  Q  S  Y  S  S  L  L  *  V  F  M  V  T  *  L  S  T  F  F  P  Q  C  N  L  H  L  L  G  Y  T  Y  L  H  F  V  Y  F  L  R  P  Y  *  F  N  T  *  L  L  P  V  K  V  I  I  K  F  I  L  S  G  K  T  E  C  L  C  H  V  Y  L  A  P  I  N  Y  S  T  K  C  P  V  E  A  H  C  L  P  L  L  K  I  A  L  K  F  T  Q  *  A  L  Y  F  *  N  V  *  K  I  A  L  K  R  H  I  V  N  G  L  *  K  L  T  Y  G  L  Q  N  S  L  N  K  Y  Y  L  R  A  S  F  S  C  F  F  T  F  K  S  G  Q  T  M  L  I  F  V  P  M  K  C  *  K  K  I  L  K  Q  H  I  D  N  G  S  *  N  C  L  R  W  T  C  L  F  W  H  P  *  S  V  R  N  N  V  V  H  C  Q  Q  L  L  E  M  T  S  K  I  S  H  Q  I  L  S  Q  F  *  R  L  L  F  T  G  F  S  F  K  S  A  Q  V  M  L  I  L  I  L  D  S  E  N  V  P  C  T  F  V  P  Y  Y  Y  Y  I  N  F  L  Y  T  K  K  L  R  N  *  K  Y  A  *  I  N  N  S  S  L  T  I  Y  L  L  F  A  K  *  *  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0308B07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 44 chains have been computed
$ 
$ memory statistics:
$ 28456 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 1897 bytes was the average size of a spliced alignment
$ 14320 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1790 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 21:29:42
-->
