<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 22:55:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438324" ref_strand="+" ref_description="SGN-E438324 [cSTA-7-M22]">
      <seq>aatgcctacttctgcaagtctccctttagattcaaaacgtgatcccagaagggatccacggcgccttgacccaaggcgtacagctgtggctgttgaagtatcaccaccgtttgttgcagaacataatacaagtgctatgcaatctgcaattctgctatctaacataaatccttccggttcatctaatagtgatattgcagtacccttgatgtcaagttctgaatgtatgccaatggcttatctgaagatggaaactaactctatcactggtgaaagttcaccaggaccagtagtcagtctgtcaactcccaaagaggaaggtcatgaggaagacctgaatgaagctattcctgatcgcaagtcggatcccacaacacatgttccactattatctcctggcaaagtagaaccggaatcggtgccagaaattccatctgaagttggagtaactaatgaaatttactctcctttgttagaaacagatcaactttctccccctatttcaactcctgcaactcctgaagatgcatgtgaggacttgcctgcacttccaccattcattgagctgacttatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="5499" stop="4212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5199" g_stop="5148" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5147" i_stop="5037" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5036" g_stop="4512" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="577" r_length="525" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E438324" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5199" e_stop="5148"/>
          <exon e_start="5036" e_stop="4512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCTACTTCTGCAAGTCTCCCTTTAGATTCAAAACGTGATCCCAGAAGGGTGAGCAAAACTAAATTATTTCAAGTTTATTCTCTTCTGTTTGTACTTAATGTTTCTCTCACTAGTGACAGTCCAATAACAAACTGTTTACTACATCATGATGCTTCACAGGATCCACGGCGCCTTGACCCAAGGCGAACAGCTGTCGCTGTTGAAGTATCACCACCGTTTGTTGCAGAACATAATATAAGTGCTACGCAATCTGCAATTCTGCAATCTGACATAAATCCTTCCAGTTCATCTAATATTGATATTGCAGTACCCTTGATGTCAAGTTCTGAATGTATGCCAATGACTTATCTGAAGATGGAAACTAACTCTATCACTGGTGAAAGTTCACCAGGACCAGTAGTCGGTTTGTTAGCTCCCAAAGAGGAAGGTCATGAGGAAGACCTGAATGAAGCTATTCCTGATCGCAAGTCGGATCCCACAATACATGTTCCACTATTATCTCCTGGCAAAGTAGAACCGGAATTGGTGCCAGAAATTCCATCTGAAGTTGGAGTAACTAATGAAATTTACTCTCCTTTGTTAGAAACAGATCAACTTTCTCCCCCTATATCAACTGCTGCAACTCCTGAAGATGCATGTGAGGACTTGCCTGCACTTCCGCCATTCATCGAACTGACTGATGAG</genome_strand>
        <mrna_strand>AATGCCTACTTCTGCAAGTCTCCCTTTAGATTCAAAACGTGATCCCAGAAGG...............................................................................................................GATCCACGGCGCCTTGACCCAAGGCGTACAGCTGTGGCTGTTGAAGTATCACCACCGTTTGTTGCAGAACATAATACAAGTGCTATGCAATCTGCAATTCTGCTATCTAACATAAATCCTTCCGGTTCATCTAATAGTGATATTGCAGTACCCTTGATGTCAAGTTCTGAATGTATGCCAATGGCTTATCTGAAGATGGAAACTAACTCTATCACTGGTGAAAGTTCACCAGGACCAGTAGTCAGTCTGTCAACTCCCAAAGAGGAAGGTCATGAGGAAGACCTGAATGAAGCTATTCCTGATCGCAAGTCGGATCCCACAACACATGTTCCACTATTATCTCCTGGCAAAGTAGAACCGGAATCGGTGCCAGAAATTCCATCTGAAGTTGGAGTAACTAATGAAATTTACTCTCCTTTGTTAGAAACAGATCAACTTTCTCCCCCTATTTCAACTCCTGCAACTCCTGAAGATGCATGTGAGGACTTGCCTGCACTTCCACCATTCATTGAGCTGACTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438322" ref_strand="+" ref_description="SGN-E438322 [cSTA-7-M18]">
      <seq>aatgcctacttctgcaagtctccctttagattcaaaacgtgatcccagaagggatccacggcgccttgacccaaggcgtacagctgtggctgttgaagtatcaccaccgtttgttgcagaacataatacaagtgctatgcaatctgcaattctgctatctaacataaatccttccggttcatctaatagtgatattgcagtacccttgatgtcaagttctgaatgtatgccaatggcttatctgaagatggaaactaactctatcactggtgaaagttcaccacgaccagtagtcagtctgtcaactcccaaagaggaaggtcatgaggaagacctgaatgaagctattcctgatcgcaagtcggatcccacaacacatgttccactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="5499" stop="4400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5199" g_stop="5148" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5147" i_stop="5037" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5036" g_stop="4700" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="389" r_length="337" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E438322" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5199" e_stop="5148"/>
          <exon e_start="5036" e_stop="4700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCTACTTCTGCAAGTCTCCCTTTAGATTCAAAACGTGATCCCAGAAGGGTGAGCAAAACTAAATTATTTCAAGTTTATTCTCTTCTGTTTGTACTTAATGTTTCTCTCACTAGTGACAGTCCAATAACAAACTGTTTACTACATCATGATGCTTCACAGGATCCACGGCGCCTTGACCCAAGGCGAACAGCTGTCGCTGTTGAAGTATCACCACCGTTTGTTGCAGAACATAATATAAGTGCTACGCAATCTGCAATTCTGCAATCTGACATAAATCCTTCCAGTTCATCTAATATTGATATTGCAGTACCCTTGATGTCAAGTTCTGAATGTATGCCAATGACTTATCTGAAGATGGAAACTAACTCTATCACTGGTGAAAGTTCACCAGGACCAGTAGTCGGTTTGTTAGCTCCCAAAGAGGAAGGTCATGAGGAAGACCTGAATGAAGCTATTCCTGATCGCAAGTCGGATCCCACAATACATGTTCCACTAT</genome_strand>
        <mrna_strand>AATGCCTACTTCTGCAAGTCTCCCTTTAGATTCAAAACGTGATCCCAGAAGG...............................................................................................................GATCCACGGCGCCTTGACCCAAGGCGTACAGCTGTGGCTGTTGAAGTATCACCACCGTTTGTTGCAGAACATAATACAAGTGCTATGCAATCTGCAATTCTGCTATCTAACATAAATCCTTCCGGTTCATCTAATAGTGATATTGCAGTACCCTTGATGTCAAGTTCTGAATGTATGCCAATGGCTTATCTGAAGATGGAAACTAACTCTATCACTGGTGAAAGTTCACCACGACCAGTAGTCAGTCTGTCAACTCCCAAAGAGGAAGGTCATGAGGAAGACCTGAATGAAGCTATTCCTGATCGCAAGTCGGATCCCACAACACATGTTCCACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430017" ref_strand="+" ref_description="SGN-E430017 [STM-53-C7]">
      <seq>tttttttttttatccagggggaaaaccctgttgaaaattagattatctgggtaataagaagtgtgtcaatgttacagaaaatagcaatacattatcaaaaatacttgaagtgtcagacactacaaggtaatgatgccgtatgtacaatttaagagatcaaaaatttgctaaactttaatgttgtcttcgaaatgtacaatgcttggttaataacttgtccaaacagttcttatcccaaatggcgtgacaaatttatccaccgcttaatctgcctaccatctgtcaatcttgtggaaatcagctaacttttacatctgttatctgaaccatcagttcagcattccaagcaaaatgccattttaactccacgttaaaaagctgggctcatgctgcaataacagcaaaaataagcagttgaacttgaactacagccattaccaagcatctgtcaactctccataaattcaaagtaataaatcaaacagcagtcactgccaaaattttggaggcagaagtcttatttggctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="11936" stop="13054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12235" g_stop="12754" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="530" r_length="523" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E430017" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12235" e_stop="12754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATCCAGGGGGAAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATC-AAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAA--T--CTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGG</genome_strand>
        <mrna_strand>TTTTATCCAGGGGGAAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAGAAAATAGCAATACATTATCAAA-AATACTT-GAAGTGTCAGACACTACAAGGTAATGATGCCGTATGTACAATTTAAGAGATCAAAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAATGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTGCCTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGGCAGAAGTCTTATTTGGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288128" ref_strand="+" ref_description="SGN-E288128 [cLES-7-E10]">
      <seq>aaaaccctgttgaaaattagattatctgggtaataagaagtgtgtcaatgttacaaaaaatagcaatacattatcaaacaatacttggaagtgtcagacactacaaggttatgatgccgtatgtacaatttaagagatcaaaaatttgctaaactttaatgttgtcttcgaaatgtacagtgcttggttaataacttgtccaaacagttcttatcccaaatggcgtgacaaatttatccaccgcttaatctaccatctgtcaatcttgtagaaatcagctaacttttacatctgttatctgaaccatcagttcagcattccaagcaaaatgccattttaactccacgttaaaaagctgggctcatgctgcaataacagcaaaaataagcagttgaacttgaactacagccattaccaagcatctgtcaactctccataaattcaaagtaataaatcaaacagcagtcactgccaaaattttggagtcagaagtcttatttggctgggcaatatgggatttactgagaggttatgacaaaggatcatcagagtaattctttctggcaaacttaaaaaatactattggcagggatcactgccataattgccagttactgacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="11949" stop="13173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12249" g_stop="12873" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E288128" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12249" e_stop="12873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATC-AAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTTTTTCTGGCAAACTTAAAAAATACTTTTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</genome_strand>
        <mrna_strand>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATCAAAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTAGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTCTTTCTGGCAAACTTAAAAAATACTATTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479235" ref_strand="+" ref_description="SGN-E479235 [cSTD-9-O11]">
      <seq>gaacgcactattccatccgtattttctgtccggcccggcggaattccaacacggcagcggaggacggtgaagtttcggtttttactctggtttcttcaaaaccctaagtataagtaaaccctagctacacattgtttttgtcaagagaccttaacatggctgggccaattcgggagcaagctctaccgctactcgcgtccgctaacaaccacggtgatttggcagtaaagctatcttcgttgaagcaactgaaagatgtattgttatcggcagagccatctcaagttgctgagcttctctcttatttaattgaccttcagtcttcgcctgaaagtctcttacgcaaatgcctcattgaggtaattgaggcggttgggatgaaagcaaaggaacatttgttggtagtaatgcccgtattatttgcatgcttaaaagatatgaattctatggtggcaaagcaatcaattatatctggcatgaaaatcttttgtggcgtattggaggaattatcatctcagtttcaccggcacggtttagttgaaaggtggcttgaagagctctggacatggatggtcaaattcaaggatgctgtctttggcgttatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="20019" stop="16784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19684" g_stop="19376" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="358" r_length="307" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19375" i_stop="18868" i_length="508">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18867" g_stop="18708" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="518" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18707" i_stop="17173" i_length="1535">
            <donor d_prob="0.659" d_score="0.98"/>
            <acceptor a_prob="0.782" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17172" g_stop="17083" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="608" r_length="90" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E479235" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19684" e_stop="19376"/>
          <exon e_start="18867" e_stop="18708"/>
          <exon e_start="17172" e_stop="17083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGCGGAGGACGGTGAAGTTTCGGTTATTACTCCGGTTTGTTCAAAACCCTAAGTATAAGTAAACCCTAAGCTACACATTTGTTTTTGTGAAGAGACCTTAACATGGCTGGACCAATTCGGGAGCAAGCTCTACCGCTACTCGCGTCCGCTAACAACCACGGTGATTTGTCAGTAAAACTATCTTCGTTGAAGCAATTGAAAGATGTATTGTTATCGGCGGAGCCATCTCAAGTTGCTGAGCTTCTCTCTTATTTAATTGACCTTCAGTCTTCACCTGAAAGTCTCTTACGCAAAGGCCTCATTGAGTAAGTTCAATTGAATCTTTTTATCGAAATATTAGTATCACATTTTCAGCTAAGGTAACCAAGTGATGGACTTTGTTTGTAATTGAATTGGTTCTTTTTATTTGTATTAGAATAAAATTAGAAGCTTATTTAGGACTAAATATGTGTTTGGAAGGTGTTGCATTTTGTGATAGACAAGGATTGAAAGTTACAGCTTGACACTTTCTTTTCCATATATAAAGGTAAGTCCTGCTATAATTTGATTACCCCCTTGACATGAGAAGGTTGATCTACTGTTTGAGCCATCTACTTCTAACCAAGAGTTTGGGAGTTCGGTATACCAAAGTAAAAACATAAAAAAAGGATTACTTGCTGTTGCAATCAGTAGTTAATATGTTGGAACTAGCTGATTCCAGAAGATGGTTGAAAAAGGACGTGCTTGCATGCTTTTGGTATTCTGATTTTATGTGTAATTGTTTCTTTTCCATGTTGTGTTCATCATTCTAACTTTATTCTGTACGTGTGTCAGGGTAATTGAGGCGGTTGGGATGAAAGCAAAGGAACATTTGTTGGTATTAATGCCCGTATTATTTGCATGCTTAAAAGATATGAATTCTATGGTGGCAAAGCAATCAGTTATATCTGGCATGAAAATCTTTTGTGGTGTATTGGAGGAATTATCATCTCAGGTTACACACTTGTTCATGATTTTGTTCTTTCTGTAGCTTGTTGACTGAGCCCGTATCCAACATAGGCTTGTTTCATTATAATCATGGTTGTGATTCTTTTGAGGGGATCTTTGGTCACTTTCAGCTCGTATCCCAAAAAAAGTCCTGTCTCTTCTGTGCAAGGCTTGCGCACTAGGTCACTTTTTTTTTTAATTAATGATGTTATGTTTAAAGTTCTAGACTTCTTAGTAATTTGAGGCCATGATTGCATAATTGATTTTCTATAGAAGTTCAACCCTTCAGTCTCCGATGAACTTCAGTTTGTACAGTTATGTGGAAAAAAGTTCAGTGAACTCAATTGATGCTATCTCTCATTAATTATGTGGAAAAAAGTTCAACGAACTTGAGTTTCTGCCGGGTTATTATTTCAATAACTTTGTATGACAAGTTCCATCAAATCTTATTGTCGAGCGAGGTTCTGTTTGTTGGTACTTCAAAAATTTTCTTTCATAGCACCTCTGTCATTGTTGGATTTGGCTGTGTCTTCGAACTATATTTTTTATCATCCACAATGTAGTTTGGGTGTGCGAGACTGTTTTTCTGGGGCTGATTTTCTATAGAAGTCGAAATTTTCAGTCTCCAATGAATTTGAGTTTGTACAGTTATGTGGTTCAGTGAACTCGATGGCTTTGACTTTTTTTGGAGCCCAATTGATTTAGAGCAAGGTTCCGTATTTGGTACTTCAGTTTTTCTATCACATCTCTGTCATAATTGGTATTAGGCTATGTGTTCGAACTATATTTGTATTAATCTGAATAGAAGGGTAAGATAGAAATATTTTGGATGTTTATGGGGGTTACCAGCTGTATTTTGTGTAATGTCACTCACTCACTCTAGGACGGTGAAAGTACCCATCGGATGAGTTGACTGTTCCGCTGCCGTCATTTCTTTGTGGGAGGAGTTCCAAGGGACAAATGAGTGGTCTGAATTTTGACGTTCATGTGGGCTACTTGTGGTTGTTAGAGGAGAATACAAACGTGTTCACTTTGAGTAGTTCAGATTTTTTTTCTTGGATCAGGATGAGTAGTTTGGAACTTGGAATTAATATCCCAAAGAAGTTCAAAATAATACTCGCGAGCATAATGTGGTAGCAATAGCATAGGGTTGAGCCTGACAGGGACTGCATAAACCCATTGGGCCGCTATGCACAGGTCTTGGCTAGATGGGTGATGGTGGTTAACATATACTATAGTACCATACATATGCTAGTGATATTGTATTGGTGTGGATGACTGACCAGTGATTTTTCTTATACTGATACAAAAGCTGGAACTTTGGCATGAGAAGTTCAATCTGAGTAAACCCTTCTCTTAATTGTTCAGTATGTGTCAAAATGCATTGATTTACTAGTGTTGATTCGTTAAGTTTTATCCTCCCTGTCCCTGTGCATTTTCCGACATACCATCTATAACATGTTTAATTTATCCTTCTTTCACAACAATTATCTTCTTCCCTAATAAGTTCAAAGATCTAAATGCTTCTTTTATAAATTATAGTTTCACCGGCACGGTATAGTTGAAAGGTGGCTTGAAGAGCTCTGGACTTGGATGGTCAAATTCAAGGATACTGTCGTTGGAATTATTTTT</genome_strand>
        <mrna_strand>CGGCAGCGGAGGACGGTGAAGTTTCGGTTTTTACTCTGGTTTCTTCAAAACCCTAAGTATAAGTAAACCCT-AGCTACACA-TTGTTTTTGTCAAGAGACCTTAACATGGCTGGGCCAATTCGGGAGCAAGCTCTACCGCTACTCGCGTCCGCTAACAACCACGGTGATTTGGCAGTAAAGCTATCTTCGTTGAAGCAACTGAAAGATGTATTGTTATCGGCAGAGCCATCTCAAGTTGCTGAGCTTCTCTCTTATTTAATTGACCTTCAGTCTTCGCCTGAAAGTCTCTTACGCAAATGCCTCATTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATTGAGGCGGTTGGGATGAAAGCAAAGGAACATTTGTTGGTAGTAATGCCCGTATTATTTGCATGCTTAAAAGATATGAATTCTATGGTGGCAAAGCAATCAATTATATCTGGCATGAAAATCTTTTGTGGCGTATTGGAGGAATTATCATCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACCGGCACGGTTTAGTTGAAAGGTGGCTTGAAGAGCTCTGGACATGGATGGTCAAATTCAAGGATGCTGTCTTTGGCGTTATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723498" ref_strand="+" ref_description="SGN-E723498 [FC20CG08]">
      <seq>ttggcggccaatcggccgaattgaaagcttgtatctgcccttgttatcaaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccaaatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgaaattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttaccatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23556" stop="25687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23854" g_stop="24235" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="403" r_length="382" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="465" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25387" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="680" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E723498" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23854" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCTTGTATCTGCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTC</genome_strand>
        <mrna_strand>TGAAAGCTTGTATCTGCCCTTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAAATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAAATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTACCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311496" ref_strand="+" ref_description="SGN-E311496 [cLEZ-18-N16]">
      <seq>gccattgttatcaaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23569" stop="25579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23869" g_stop="24235" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="429" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25279" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="536" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E311496" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23869" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATG</genome_strand>
        <mrna_strand>GCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296550" ref_strand="+" ref_description="SGN-E296550 [cLET-19-F24]">
      <seq>gccattgttatcaaaattctcctttaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23569" stop="24466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23869" g_stop="24166" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E296550" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23869" e_stop="24166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGAT</genome_strand>
        <mrna_strand>GCCATTGTTATCAAAATTCTCCTTTAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303015" ref_strand="+" ref_description="SGN-E303015 [cLEW-26-E24]">
      <seq>ttgttatcaaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacaccagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23573" stop="25681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23873" g_stop="24235" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="426" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25381" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="635" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E303015" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23873" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACAC-AGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTA</genome_strand>
        <mrna_strand>TTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACCAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328891" ref_strand="+" ref_description="SGN-E328891 [cTOC-24-M18]">
      <seq>gttatcaaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaaccctatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatggtatgtaagccggggtgaacccggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23575" stop="25791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23875" g_stop="24235" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="423" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25491" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="743" r_length="320" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E328891" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23875" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCC-GGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATG</genome_strand>
        <mrna_strand>GTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCCTATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGGTATGTAAGCCGGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278505" ref_strand="-" ref_description="SGN-E278505 [cLEL-2-F17](-)">
      <seq>gcacgagaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgccaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23582" stop="24870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23875" g_stop="24235" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24570" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="385" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E278505" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23875" e_stop="24235"/>
          <exon e_start="24547" e_stop="24570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGC</genome_strand>
        <mrna_strand>GCACGAGAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGCCAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307973" ref_strand="+" ref_description="SGN-E307973 [cLEZ-7-N18]">
      <seq>tcaaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatacctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccggatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttttcaagtacgagtttgacctccaggttgatatccctgttacttaccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23579" stop="24487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23879" g_stop="24187" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E307973" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23879" e_stop="24187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCT</genome_strand>
        <mrna_strand>TCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATACCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGGATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTTTCAAGTACGAGTTTGACCTCCAGGTTGATATCCCTGTTACTTACCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551317" ref_strand="+" ref_description="SGN-E551317 [TUS-54-D16]">
      <seq>caaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23580" stop="25583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23880" g_stop="24235" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="418" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25283" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="529" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E551317" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23880" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGC</genome_strand>
        <mrna_strand>CAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688626" ref_strand="+" ref_description="SGN-E688626 [t3_tus_54_D16]">
      <seq>caaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23580" stop="25583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23880" g_stop="24235" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="418" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25283" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="529" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E688626" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23880" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGC</genome_strand>
        <mrna_strand>CAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251818" ref_strand="+" ref_description="SGN-E251818 [cLEG-14-K15]">
      <seq>aaaattctccgttttattccgttatggagggttgggatccgagggccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgtctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtatgaccttcagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgttcagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaaaaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23595" stop="25520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23881" g_stop="24235" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="418" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25220" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="466" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E251818" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23881" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCCG-GCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATG</genome_strand>
        <mrna_strand>AAAATTCTCCGTTTTATTCCGTTATGGAGGGTTGGGATCCGAGGGCCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGTCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTATGACCTTCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTTCAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAAAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352440" ref_strand="-" ref_description="SGN-E352440 [cTOS-9-N12]">
      <seq>atcaatgancaatcccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacccggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaattttatcggactaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23737" stop="25813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24037" g_stop="24235" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="261" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25512" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="601" r_length="340" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="622"/>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E352440" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352440" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24037" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTA</genome_strand>
        <mrna_strand>ATCAATGANCAATCCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTTATCGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733827" ref_strand="+" ref_description="SGN-E733827 [LB11AC02]">
      <seq>gcatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgaccgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatggaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacgcggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23772" stop="25799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24072" g_stop="24235" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="226" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25498" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="552" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="563"/>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E733827" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24072" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAA</genome_strand>
        <mrna_strand>GCATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACGCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274184" ref_strand="+" ref_description="SGN-E274184 [cLEN-8-L19]">
      <seq>tgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23779" stop="25729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24079" g_stop="24235" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="219" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25429" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="476" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E274184" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24079" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGG</genome_strand>
        <mrna_strand>TGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732470" ref_strand="+" ref_description="SGN-E732470 [LB02BA09]">
      <seq>ctattcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgaccgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatggaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacgcggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaattttatcggactannaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23784" stop="25812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24084" g_stop="24235" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25512" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="554" r_length="340" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="577"/>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E732470" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24084" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTA</genome_strand>
        <mrna_strand>CTATTCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACGCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTTATCGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726749" ref_strand="+" ref_description="SGN-E726749 [LA12CH04]">
      <seq>ctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgaccgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatggaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacgcggctctttgagatgcaactgtcacatctgctgatttattttagcgtgctttatgccctcaaattttatcggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23784" stop="25811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24084" g_stop="24235" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25511" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="553" r_length="339" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E726749" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24084" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACT</genome_strand>
        <mrna_strand>CTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACGCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAGCGTGCTTTATGCCCTCAAATTTTATCGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351081" ref_strand="+" ref_description="SGN-E351081 [cTOS-6-H15]">
      <seq>tgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacccggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaattttatcggactaatgatactcttccttttaatttatgaatcatattgaggaggctaagtttcatgttgttaaagcctcatgaaacctgaacattgagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23872" stop="25902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24172" g_stop="24235" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="126" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25602" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="556" r_length="430" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E351081" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24172" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATAATGTCAAAGCCTCGTGAAACCTGAACATTGAGATACA</genome_strand>
        <mrna_strand>TGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTTATCGGACTAATGATACTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATGTTGTTAAAGCCTCATGAAACCTGAACATTGAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219853" ref_strand="+" ref_description="SGN-E219853 [cLEL-24-K17](-)">
      <seq>tgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacccggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaattttatcggactaatgatactcttccttttaatttatgaatcatattgaggaggctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="24268" stop="25857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24568" g_stop="24608" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25173" g_stop="25557" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="426" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="442"/>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E219853" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24568" e_stop="24608"/>
          <exon e_start="25173" e_stop="25557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAA</genome_strand>
        <mrna_strand>TGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTTATCGGACTAATGATACTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219901" ref_strand="+" ref_description="SGN-E219901 [cLEL-24-K17](-)">
      <seq>acgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacccggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaattttatcggactaatgatactcttccttttaatttatgaatcatattgaggaggctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="24893" stop="25857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25193" g_stop="25557" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="381"/>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E219901" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25193" e_stop="25557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAA</genome_strand>
        <mrna_strand>ACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTTATCGGACTAATGATACTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611988" ref_strand="-" ref_description="SGN-E611988 [61746]">
      <seq>tggctgagaagatgcagaaacatggagctacaggatggcttgtgaacactggctggtcaggtggaagttatggatcaggcagccgaattaagttagcatacacaaggaagatcatcgatgccatccactctggtgcccttttgaaagcagaatacaagaagaccgaggtatttgggctggagattccaactgcacttgagggaataccttccgagattctggatcccgtgaacacttggcccgacaagaaggcacacaacgataccctgttgaagctgggaggcctctttaggaagaattttgaggtgttcacaaactacaagattggaagtgatagcaacctgactgaggagatcctggcagctggtccaaacttctaattgaagaaggatttgcctgagtgatggtttgggaaaatatgacctaaaatattaaagagaaaaatcagattagccagaaaacgggataaaaaannttttgttagttacattttatgtgtaattggtcaggaaggaggcttcacatccatgaatctttaatatttattcttgtttttgtttcatttggggtcgtgtttgttttctggtgaggttgaggcggaggttgtatttgtaactttcattcacttgtgctgtaatattttcagtcaataatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="28278" stop="26853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27978" g_stop="27912" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27830" g_stop="27662" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="236" r_length="169" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27575" g_stop="27153" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="657" r_length="421" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E611988" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611988" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27978" e_stop="27912"/>
          <exon e_start="27830" e_stop="27662"/>
          <exon e_start="27575" e_stop="27153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAGGTAAAAGCACTCACCCAGAACATGTACCCAAATGATGTCCATTCAAACTATATATATAACGAATCTCTCTGTTATGAACAGTTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACTGTAAGTTAGCACACACTTCAGCATTGTCTAACTGCTACAATCTGCATATACCGTTTTATTAATGTGAAACTCATCTGTTGTTACAGTGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGATTAGCCAGAAAACATGTGTAATATTATTTTGTGTGTTACATTTTATGTGTTATTGGTCCGGAAGGAGGTTTCACATCCATGAATCTTTGTTCTTTATTCTTGTTTTTATTCCATTTGGGATCGTGTTTGTTTTCTGGTGAGGTTGAGGCGGAGGTTGTTATTGTAACTTTCATTCACTTGTGCTGTAATATTTTCAGTCAATAATGAA</genome_strand>
        <mrna_strand>TGGCTGAGAAGATGCAGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG.................................................................................TTATGGATCAGGCAGCCGAATTAAGTTAGCATACACAAGGAAGATCATCGATGCCATCCACTCTGGTGCCCTTTTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAATACCTTCCGAGATTCTGGATCCCGTGAACACT......................................................................................TGGCCCGACAAGAAGGCACACAACGATACCCTGTTGAAGCTGGGAGGCCTCTTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGGAAAATATGAC-CTAAAATAT-TAAAGAGAAAAATCAGATTAGCCAGAAAACGGGATAAAAAANNTTTTGTTAGTTACATTTTATGTGTAATTGGTCAGGAAGGAGGCTTCACATCCATGAATCTTTAATATTTATTCTTGTTTTTGTTTCATTTGGGGTCGTGTTTGTTTTCTGGTGAGGTTGAGGCGGAGGTTGTATTTGTAACTTTCATTCACTTGTGCTGTAATATTTTCAGTCAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212351" ref_strand="+" ref_description="SGN-E212351 [cLEC-74-C22]">
      <seq>ttttttccggaccaataacacataaaatgtaacacacaaaataatattacacatgttttctggctaatcttatttttctcttttgatattttaaagtcatattttgccaaaccatcactcaggcaaatccttcttcaattagaagtttggaccagctgccaggatctcctcagtcaggttgctatcacttccaatcttgtagtttgtgaacacctcaaaattcttcctaaataggcctcccagcttcaacagggtatccttgtgtgccttcttgtcgggccaagtggtcacggggtccagaatctcggaagggactccctccagtgcagttggaatctccagcccaaatacctcgggcctcctggattccgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="26998" stop="28054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27294" g_stop="27577" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27578" i_stop="27663" i_length="86">
            <donor d_prob="0.683" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27664" g_stop="27754" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="375" r_length="91" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-E212351" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27294" e_stop="27577"/>
          <exon e_start="27664" e_stop="27754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTCCGGACCAATAACACATAAAATGTAACACACAAAATAATATTACACATGTTTTCTGGCTAATCTTATTTTTCTCTTTTGATATTTTAAAGTCATATTTTGCCAAACCATCACTCAGGCAAATCCTTCTTCAATTAGAAGTTTGGACCAGCTGCCAGGATCTCCTCAGTCAGGTTGCTATCACTTCCAATCTTGTAGTTTGTGAACACCTCAAAATTCTTCCTAAATAGGCCTCCCAGCTTCAACAGGGTATCCTTGTGTGCCTTCTTGTCGGGCCACTGTAACAACAGATGAGTTTCACATTAATAAAACGGTATATGCAGATTGTAGCAGTTAGACAATGCTGAAGTGTGTGCTAACTTACAGTGTTCACGGGGTCCAGAATCTCGGAAGGTACTCCCTCAAGTGCAGTTGGAATCTCCAGCCCAAATACCTCGGTCTTCTTGTATTCTGCTTT</genome_strand>
        <mrna_strand>TTTTTTCCGGACCAATAACACATAAAATGTAACACACAAAATAATATTACACATGTTTTCTGGCTAATCTTATTTTTCTCTTTTGATATTTTAAAGTCATATTTTGCCAAACCATCACTCAGGCAAATCCTTCTTCAATTAGAAGTTTGGACCAGCTGCCAGGATCTCCTCAGTCAGGTTGCTATCACTTCCAATCTTGTAGTTTGTGAACACCTCAAAATTCTTCCTAAATAGGCCTCCCAGCTTCAACAGGGTATCCTTGTGTGCCTTCTTGTCGGGCCAAG......................................................................................TGGTCACGGGGTCCAGAATCTCGGAAGGGACTCCCTCCAGTGCAGTTGGAATCTCCAGCCCAAATACCTCGGGCCTCCTGGATTCCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747036" ref_strand="+" ref_description="SGN-E747036 [GI|16950586]">
      <seq>attcggcacgagtcgtgccgcacccttttcgttaaaattttattcttcaaattcagctttttcagctattcttcacttgattttcagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccattccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgtgtatccgacccactccagaagagctagaggattttggtactccggacttcacaatttacaatgctggtcaattcccatgtaaccgttacacccactatatgacttcctccactagcatagacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggggatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaattcgtaacagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtggcaggaaccgaagatggtattaaggagcctacagcaacattttcagcatgttttggtgcagcatttatcatgcttcatccaaccaaatatgcagccatgctggctgagaagatgctgaaacatggagctacaggatggcttgtgaacactggctggtcaggtggaagttatggatcaggcagccgaatcaagttagcatacactaggaagaacatcgatgccatccactccggcgatcttctgaaagcagaatacaagaagaccgaggtatttgggctggagattccaactgcacttgagggagtaccttccgagattctggaccccgtgaacacttggcccgacaagaaggcacacaaggataccctgttgaagctgggaggcctatttaggaagaattttgaggtgttcacaaactacaagattggaagtgatagcaacctgactgaggagatcctggcagctggtccaaacttctaattgaagaaggatttgcctgagtgatggtttggcaaaatatgactttaaaatatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33230" stop="27061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32926" g_stop="32866" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="85" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="361" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="540" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="694" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="779" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="880" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29211" g_stop="28913" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="881" r_stop="1179" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1180" r_stop="1353" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28507" g_stop="28442" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1354" r_stop="1419" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28348" g_stop="28170" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1420" r_stop="1598" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="28081" g_stop="27912" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1599" r_stop="1768" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="27830" g_stop="27662" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1769" r_stop="1937" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="27575" g_stop="27359" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1938" r_stop="2154" r_length="217" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E747036" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>2130</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32926" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28442"/>
          <exon e_start="28348" e_stop="28170"/>
          <exon e_start="28081" e_stop="27912"/>
          <exon e_start="27830" e_stop="27662"/>
          <exon e_start="27575" e_stop="27359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCAC-TGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAGGTAAAAGCACTCACCCAGAACATGTACCCAAATGATGTCCATTCAAACTATATATATAACGAATCTCTCTGTTATGAACAGTTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACTGTAAGTTAGCACACACTTCAGCATTGTCTAACTGCTACAATCTGCATATACCGTTTTATTAATGTGAAACTCATCTGTTGTTACAGTGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGATT</genome_strand>
        <mrna_strand>CTTTTCG-TTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTTGATTTTC..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCATTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT....................................................................................................................................................................................................................GTGTATCCGACCCACTCCAGAAGAGCTAGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGGGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATTCGTAACAG.............................................................................................AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG........................................................................................GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTTGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG.................................................................................TTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGAACATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT......................................................................................TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230627" ref_strand="+" ref_description="SGN-E230627 [cLEL-35-K20](-)">
      <seq>ggcaccagggtatttgggctggagattccaactgcacttgagggagtaccttccgagattctggaccccgtgaacacttggcccgacaagaaggcacacaaggataccctgttgaagctgggaggcctatttaggaagaattttgaggtgttcacaaactacaagattggaagtgatagcaacctgactgaggagatcctggcagctggtccaaacttctaattgaagaaggatttgcctgagtgatggtttggcaaaatatgactttaaaatatccaaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="28036" stop="27061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27739" g_stop="27662" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27575" g_stop="27361" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="293" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E230627" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27739" e_stop="27662"/>
          <exon e_start="27575" e_stop="27361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACTGTAAGTTAGCACACACTTCAGCATTGTCTAACTGCTACAATCTGCATATACCGTTTTATTAATGTGAAACTCATCTGTTGTTACAGTGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGA</genome_strand>
        <mrna_strand>GGCACCAGGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT......................................................................................TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCCAAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230699" ref_strand="+" ref_description="SGN-E230699 [cLEL-35-K20](-)">
      <seq>ggcaccagggtatttgggctggagattccaactgcacttgagggagtaccttccgagattctggaccccgtgaacacttggcccgacaagaaggcacacaaggataccctgttgaagctgggaggcctatttaggaagaattttgaggtgttcacaaactacaagattggaagtgatagcaacctgactgaggagatcctggcagctggtccaaacttctaattgaagaaggatttgcctgagtgatggtttggcaaaatatgactttaaaatatcaaaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="28036" stop="27061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27739" g_stop="27662" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27575" g_stop="27361" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="293" r_length="215" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E230699" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27739" e_stop="27662"/>
          <exon e_start="27575" e_stop="27361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACTGTAAGTTAGCACACACTTCAGCATTGTCTAACTGCTACAATCTGCATATACCGTTTTATTAATGTGAAACTCATCTGTTGTTACAGTGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGA</genome_strand>
        <mrna_strand>GGCACCAGGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT......................................................................................TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543672" ref_strand="+" ref_description="SGN-E543672 [TUS-65-J19](-)">
      <seq>gaagtggattatacagacaaatctgtaacagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtggcaggaaccgaagatggtattaaggagcctacagcaacattttcagcatgttttggtgcagcatttatcatgcttcatccaaccaaatatgcagccatgctggctgagaagatgctgaaacatggagctacaggatggcttgtgaacactggctggtcaggtggaagttatggatcaggcagccgaatcaagttagcatacactaggaagatcatcgatgccatccactccggcgatcttctgaaagcagaatacaagaagaccgaggtatttgggctggagattccaactgcacttgagggagtaccttccgagattctggaccccgtgaacacttggcccgacaagaaggcacacaaggataccctgttgaagctgggaggcctatttaggaagaattttgaggtgttcacaaactacaagattggaagtgatagcaacctgactgaggagatcctggcagctggtccaaacttctaattgaagaaggatttgcctgagtgatggtttggcaaaatatgactttaaaatatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="28772" stop="27066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28472" g_stop="28442" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93">
            <donor d_prob="0.926" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28348" g_stop="28170" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="210" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28081" g_stop="27912" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="380" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27830" g_stop="27662" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="549" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27575" g_stop="27368" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="757" r_length="208" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E543672" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28472" e_stop="28442"/>
          <exon e_start="28348" e_stop="28170"/>
          <exon e_start="28081" e_stop="27912"/>
          <exon e_start="27830" e_stop="27662"/>
          <exon e_start="27575" e_stop="27368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAGGTAAAAGCACTCACCCAGAACATGTACCCAAATGATGTCCATTCAAACTATATATATAACGAATCTCTCTGTTATGAACAGTTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACTGTAAGTTAGCACACACTTCAGCATTGTCTAACTGCTACAATCTGCATATACCGTTTTATTAATGTGAAACTCATCTGTTGTTACAGTGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAA</genome_strand>
        <mrna_strand>GAAGTGGATTATACAGACAAATCTGTAACAG.............................................................................................AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG........................................................................................GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTTGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG.................................................................................TTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT......................................................................................TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462440" ref_strand="+" ref_description="SGN-E462440 [cPRO-11-N23]">
      <seq>agaacacccgggcagcatacccaattgaatacatcccgaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtatgtcctcatgaaatctgatgccgcacagattacatttgaactttcaagatgtgatgtaaagactattgcttcgacatttcacaggtggcaggaaccgaagatggtattaaggagcctacagcaacattttcagcatgtttcggtgcagcatttatcatgcttcatccaaccaaatatgcagccatgctggctgagaagatgcagaaacatggagctacaggatggcttgtgaacactggctggtcaggtggaagttatggatcaggcagccgaattaagttagcatacacaaggaagatcatcgatgccatccactctggtgcccttttgaaagcagaatacaagaagaccgaggtatttgggctggagattccaactgcacttganggaataccttccgagattctggatcccgtgaacacttggcccgacnagaaggcacacaacgataccctgttgaagctgggaagcctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="28648" stop="27222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28348" g_stop="27912" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27830" g_stop="27662" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="605" r_length="169" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27575" g_stop="27522" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="659" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E462440" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28348" e_stop="27912"/>
          <exon e_start="27830" e_stop="27662"/>
          <exon e_start="27575" e_stop="27522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAGGTAAAAGCACTCACCCAGAACATGTACCCAAATGATGTCCATTCAAACTATATATATAACGAATCTCTCTGTTATGAACAGTTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACTGTAAGTTAGCACACACTTCAGCATTGTCTAACTGCTACAATCTGCATATACCGTTTTATTAATGTGAAACTCATCTGTTGTTACAGTGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTT</genome_strand>
        <mrna_strand>AGAACACCCGGGCAGCATACCCAATTGAATACATCCCGAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTCCTCATGAAATCTGATGCCGCACAGATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTC-GACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCAGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG.................................................................................TTATGGATCAGGCAGCCGAATTAAGTTAGCATACACAAGGAAGATCATCGATGCCATCCACTCTGGTGCCCTTTTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGANGGAATACCTTCCGAGATTCTGGATCCCGTGAACACT......................................................................................TGGCCCGACNAGAAGGCACACAACGATACCCTGTTGAAGCTGGGAAGCCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699918" ref_strand="+" ref_description="SGN-E699918 [FA11CD04]">
      <seq>aggagatgtattccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaatctgtaacagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtggcaggaaccgaagatggtattaaggagcctacagcaacattttcagcatgttttggtgcagcatttatcatgcttcatccaaccaaatatgcagccatgctagctgagaagatgctgaaacatggagctacaggatggcttgtgaacactggctggtcacgtggaagttacggatcaagcagccgaatcaagttagcatacactaggaagatcatcgatgccatccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="29233" stop="27468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28944" g_stop="28913" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="207" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28442" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="273" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28348" g_stop="28170" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="452" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28081" g_stop="27912" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="622" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27830" g_stop="27768" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="685" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E699918" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28944" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28442"/>
          <exon e_start="28348" e_stop="28170"/>
          <exon e_start="28081" e_stop="27912"/>
          <exon e_start="27830" e_stop="27768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGATGTA-GCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAGGTAAAAGCACTCACCCAGAACATGTACCCAAATGATGTCCATTCAAACTATATATATAACGAATCTCTCTGTTATGAACAGTTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTC</genome_strand>
        <mrna_strand>AGGAGATGTATTCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG.............................................................................................AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG........................................................................................GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTTGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTAGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCACGTGGAAG.................................................................................TTACGGATCAAGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214860" ref_strand="+" ref_description="SGN-E214860 [cLEC-78-O19]">
      <seq>tgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggagatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaatctgtaacagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtggcaggaaccgaagatggtattaaggagcctacagcaacattttcagcatgttttggtgcagcatttatcatgcttcatccaaccaaatatgcagccatgctggctgagaagatgctgaaacatggagctacaggatggcttgtgaacactggctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="29343" stop="27623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29043" g_stop="28913" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="305" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28442" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="371" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28348" g_stop="28170" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="550" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28081" g_stop="27923" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="709" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E214860" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29043" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28442"/>
          <exon e_start="28348" e_stop="28170"/>
          <exon e_start="28081" e_stop="27923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGG</genome_strand>
        <mrna_strand>TGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG.............................................................................................AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG........................................................................................GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTTGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213209" ref_strand="+" ref_description="SGN-E213209 [cLEC-72-N19]">
      <seq>tgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggagatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaatctgtaacagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtggcaggaaccgaagatggtattaaggagcctacagcaacattttcagcatgttttggtgcagcatttatcatgcttcatccaaccaaatatgcagccatgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="29343" stop="27675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29043" g_stop="28913" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="305" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28442" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="371" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28348" g_stop="28170" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="550" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28081" g_stop="27975" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="657" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E213209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29043" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28442"/>
          <exon e_start="28348" e_stop="28170"/>
          <exon e_start="28081" e_stop="27975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGC</genome_strand>
        <mrna_strand>TGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG.............................................................................................AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG........................................................................................GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTTGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729129" ref_strand="+" ref_description="SGN-E729129 [LA20AC10]">
      <seq>attacaatgctggtcaattccatgtaaccgttacacccactatatgacttcctccactagcatagacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggagatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaatctgtaacagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtggcaggaaccgaagaaggtattaaggagcctacagcaacattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="29454" stop="27734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29155" g_stop="28913" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="416" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28507" g_stop="28442" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="482" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28348" g_stop="28170" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="661" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28081" g_stop="28034" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="709" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E729129" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29155" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28442"/>
          <exon e_start="28348" e_stop="28170"/>
          <exon e_start="28081" e_stop="28034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCA</genome_strand>
        <mrna_strand>ATTACAATGCTGGTCAATT-CCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG.............................................................................................AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG........................................................................................GTGGCAGGAACCGAAGAAGGTATTAAGGAGCCTACAGCAACATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235454" ref_strand="+" ref_description="SGN-E235454 [cLED-11-I21]">
      <seq>aaggagcctgatatctggaatgccatcaagtttggcactggtactttctgattctgacttgatcatcttgatgttatttcctgccaagtcacagggtgaagccaaattaataattttacgctctatgcagtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaatctgtaacaggtaacttgtgttgaatcgaacagagattttcatctcgatgtcttgaatcaattgatgttgctttatggctataatggtatggtttgattgcagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtatgtgctcacgaaatctgatgcctcacatattacatttgaactttcaagatgtgatgtaaagactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="28937" stop="27800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28637" g_stop="28100" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E235454" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28637" e_stop="28100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATT</genome_strand>
        <mrna_strand>AAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCTGACTTGATCATCTTGATGTTATTTCCTGCCAAGTCACAGGGTGAAGCCAAATTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTTGTGTTGAATCGAACAGAGATTTTCATCTCGATGTCTTGAATCAATTGATGTTGCTTTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACGAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253648" ref_strand="+" ref_description="SGN-E253648 [cLEG-32-K2]">
      <seq>ctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgtgtatccgacccactccagaagagctagaggattttggtactccggacttcacaatttacaatgctggtcaattcccatgtaaccgttacacccactatatgacttcctccactagcatagacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggagatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31013" stop="28293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30844" g_stop="30831" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="99" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29211" g_stop="28913" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="499" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="673" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28507" g_stop="28495" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="686" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E253648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30844" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGT</genome_strand>
        <mrna_strand>CTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT....................................................................................................................................................................................................................GTGTATCCGACCCACTCCAGAAGAGCTAGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266013" ref_strand="+" ref_description="SGN-E266013 [cLEI-6-H4]">
      <seq>tgccagagcctatcactccttgttcatgcacaacgatgtgtatccgacccactccagaagagctagaggattttggtactccggacttcacaatttacaatgctggtcaattcccatgtaaccgttacacccactatatgacttcctccactagcatagacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggagatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="29759" stop="28293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29459" g_stop="29424" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29211" g_stop="28913" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="336" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="510" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28507" g_stop="28498" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="520" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E266013" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29459" e_stop="29424"/>
          <exon e_start="29211" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAGAGCCTATCACTCCTTGTTCATGCACAAC-ATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAA</genome_strand>
        <mrna_strand>TGCCAGAGCCTATCACTCCTTGTTCATGCACAACGAT....................................................................................................................................................................................................................GTGTATCCGACCCACTCCAGAAGAGCTAGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207033" ref_strand="+" ref_description="SGN-E207033 [cLEC-30-C13]">
      <seq>acgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgtgtatccgacccactccagaagagctagaggattttggtactccggacttcacaatttacaatgctggtcaattcccatgtaaccgttacacccactatatgacttcctccactagcatagacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggagatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31149" stop="28379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30849" g_stop="30831" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="104" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="205" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29211" g_stop="28913" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="504" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28771" g_stop="28679" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="597" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E207033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30849" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="28913"/>
          <exon e_start="28771" e_stop="28679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTG</genome_strand>
        <mrna_strand>ACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT....................................................................................................................................................................................................................GTGTATCCGACCCACTCCAGAAGAGCTAGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301896" ref_strand="+" ref_description="SGN-E301896 [cLEW-25-P13]">
      <seq>ttgattacctatgctctttggagaaggtgtttgtgaatgatcgaggactaaactgggatccaaacaatcctctcaaagttacaattgtatatgccaaagcctatcactccttgtttatgcacaacatgtgtattccacccactccagaatagctagaggattttggaactccggactttacaatttacaatgctggtcaattgccatgtaaccgtgacacccactatttgacttcctccactagcataaacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaaggaaaggtattttccgggtaatgcactatctaatgcctaagcgccaaattctttctctacactctggctgcaatatgggaaaagaaggagatgatgccctcttctttggatgataaggaactgggaagacaacactgtctactgatcacaacctgtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="30948" stop="28380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30648" g_stop="30623" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="127" r_length="101" r_score="0.881"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.865" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29211" g_stop="28913" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="427" r_length="300" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28771" g_stop="28680" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="519" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E301896" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30648" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="28913"/>
          <exon e_start="28771" e_stop="28680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAA-GAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATT</genome_strand>
        <mrna_strand>TTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCGAGGACTAAACTGGGATCCAAACAATCCTCTCAAAGTTACAATTGTATATGCCAAAGCCTATCACTCCTTGTTTATGCACAACAT....................................................................................................................................................................................................................GTGTATTCCACCCACTCCAGAATAGCTAGAGGATTTTGGAACTCCGGACTTTACAATTTACAATGCTGGTCAATTGCCATGTAACCGTGACACCCACTATTTGACTTCCTCCACTAGCATAAACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGGAAAGGTATTTTCCGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTTTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGATGCCCTCTTCTTTGGATGATAAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCTGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211573" ref_strand="+" ref_description="SGN-E211573 [cLEC-67-M1]">
      <seq>aaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaaggggtcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctggtgattacctatgctctttggagaaagtggttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgaactgggaagacaacactgtctactgatcaccaccggtacctgatcggagatgatgaacactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="32925" stop="28405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32625" g_stop="32452" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32451" i_stop="30985" i_length="1467">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="328" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="413" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="514" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28771" g_stop="28705" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="581" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E211573" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32625" e_stop="32452"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="28771" e_stop="28705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTG</genome_strand>
        <mrna_strand>AAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGGTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGGTGATTACCTATGCTCTTTGGAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACCACCGGTACCTGATCGGAGATGATGAACACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551309" ref_strand="+" ref_description="SGN-E551309 [TUS-50-P7]">
      <seq>acgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="32879" stop="28407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32579" g_stop="32452" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32451" i_stop="30985" i_length="1467">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="282" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="367" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="468" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28771" g_stop="28707" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="533" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E551309" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32579" e_stop="32452"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="28771" e_stop="28707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGC</genome_strand>
        <mrna_strand>ACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688555" ref_strand="+" ref_description="SGN-E688555 [t3_tus_50_p07]">
      <seq>acgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="32879" stop="28407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32579" g_stop="32452" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32451" i_stop="30985" i_length="1467">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="282" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="367" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="468" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28771" g_stop="28707" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="533" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E688555" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32579" e_stop="32452"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="28771" e_stop="28707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGC</genome_strand>
        <mrna_strand>ACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208788" ref_strand="+" ref_description="SGN-E208788 [cLEC-51-P19]">
      <seq>gacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgaactgggaagacaacactgtctactgatcacaaccggtacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31995" stop="28427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31695" g_stop="31647" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="203" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="288" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="389" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28771" g_stop="28727" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="434" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E208788" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31695" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="28771" e_stop="28727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGA</genome_strand>
        <mrna_strand>GACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204554" ref_strand="+" ref_description="SGN-E204554 [cLEC-24-A20]">
      <seq>cacactttccggagcctaaactggccgttcctcaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaatgtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgtgtatccgacccactccagaagagctagaggattttggtactccggacttcacaatttacaatgctggtcaattcccatgtaaccgttacacccactatatgacttcctgcactagcatagacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31220" stop="28732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30920" g_stop="30831" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="175" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="276" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29211" g_stop="29032" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="456" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E204554" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30920" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="29032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAAT</genome_strand>
        <mrna_strand>CACACTTTCCGGAGCCTAAACTGGCCGTTCCTCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT....................................................................................................................................................................................................................GTGTATCCGACCCACTCCAGAAGAGCTAGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTGCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722905" ref_strand="+" ref_description="SGN-E722905 [FC18CH02]">
      <seq>atccttccatggttcacctttttcgcttaaaattttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctncactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgtgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33244" stop="29122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32944" g_stop="32866" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="355" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="534" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="688" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="773" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="874" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29211" g_stop="29205" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="881" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E722905" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32944" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="29205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATC</genome_strand>
        <mrna_strand>ATCCTTCCATGGTTCACCTTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTNCACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT....................................................................................................................................................................................................................GTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720071" ref_strand="+" ref_description="SGN-E720071 [FC09DA02]">
      <seq>gggcgattggcggccaatcggccgaattgatccttccatggttcaaccttttcgcttaaaattttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33244" stop="29157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32944" g_stop="32866" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="108" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="384" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="563" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="717" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="802" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29524" g_stop="29457" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="870" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E720071" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32944" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGC</genome_strand>
        <mrna_strand>ATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267975" ref_strand="+" ref_description="SGN-E267975 [cLEI-15-I9]">
      <seq>tgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="32130" stop="29181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="192" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="346" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="431" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29524" g_stop="29481" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="475" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E267975" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCG</genome_strand>
        <mrna_strand>TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717556" ref_strand="+" ref_description="SGN-E717556 [FC02AC12]">
      <seq>gattggcggccaatcggccgaatttgatggttcaaccttttcgcttataattttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33240" stop="29188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32936" g_stop="32866" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="97" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="373" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="552" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="706" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="791" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29524" g_stop="29488" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="828" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E717556" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32936" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAA</genome_strand>
        <mrna_strand>ATGGTTCAACCTTTTCGCTTATAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718291" ref_strand="+" ref_description="SGN-E718291 [FC04BA04]">
      <seq>caagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31236" stop="29197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30936" g_stop="30831" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="191" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29524" g_stop="29497" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="219" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E718291" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30936" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACT</genome_strand>
        <mrna_strand>CAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543673" ref_strand="+" ref_description="SGN-E543673 [TUS-65-J19]">
      <seq>tggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtatgttaaacaatattatcatttcatttcactaaagtctgcttccgttatcatttttttagatgcgctaaacttatcctaaagttgttaatgtcaacggttatagaaactatgcatatgttatgtttcccccttgcttagtgctgccgcgtcataccatgtttattttcttagttaaaagaacatgtaattagtacctcattaaaataatatcactcaataaataattaaattccagaatttgaggggagagtcatcttgtcattctttgataatctaaaggcgtgtcttattccccatgttaataaaataatgtatttgtatagtcgagctactattaaaaaaaaaattatttttgtttgtcgtggtgtatgaaatggctacagtagctgccataacatgtatgttacattgtctttatgtaattattattcttagtcccattagggaaattttgtgatccaatttctgtcatgatttaattatggctacaagacactcctgtttatggtgaaaacgaattttcctcatcttcccctaggaatggatatgtcacaataacatatctgtctagcctttaataaatatgtacacatgttctacaacaaacttgcattgagttttgggtgcaatatgcgtatctactacatacaaccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31199" stop="29647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30899" g_stop="30831" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="29947" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="815" r_length="746" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E543673" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30899" e_stop="30831"/>
          <exon e_start="30707" e_stop="29947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAA-TATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATC</genome_strand>
        <mrna_strand>TGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAACTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCACTCAATAAATAATTAAATTCCAGAATTTGA-GGG-GAG------AGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATTATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGGGAAATTTTGTGATCCAATTTCTGTCATGA-T--T-----TAATTATGGCTACAAGACACTCCTGTTTATGGTGAAAACGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACATATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCATTGAGTTTTGGGTGCAATATGCGTATCTACTACATACAACCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304268" ref_strand="+" ref_description="SGN-E304268 [cLEX-12-A3]">
      <seq>ggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtatgttaaacaatattatcatttcatttcactaaagtctgcttccgttatcatttttttagatgcgctaaacttatcctaaagttgttaatgtcaacggttatagaaactatgcatatgttatgtttcccccttgcttagtgctgccgcgtcataccatgtttattttcttagttaaaagaacatgtaattagtacctcattaaaataatatcactcaataaataattaaattccagaatttgaggggagagtcatcttgtcattctttgataatctaaaggcgtgtcttattccccatgttaataaaataatgtatttgtatagtcgagctactattaaaaaaaaaattatttttgtttgtcgtggtgtatgaaatggctacagtagctgccataacatgtatgttacattgtctttatgtaattattattcttagtcccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31198" stop="29870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30898" g_stop="30831" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="30170" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="599" r_length="531" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E304268" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30898" e_stop="30831"/>
          <exon e_start="30707" e_stop="30170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAA-TATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTA</genome_strand>
        <mrna_strand>GGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAACTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCACTCAATAAATAATTAAATTCCAGAATTTGA-GGG-GAG------AGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATTATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718877" ref_strand="+" ref_description="SGN-E718877 [FC06AD08]">
      <seq>aatcggccgaattgacatccttccatggttcacccttttcgcttaaaattttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33246" stop="30313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32962" g_stop="32866" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="371" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="550" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="704" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="789" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E718877" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32962" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCCCAATGAACACATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG</genome_strand>
        <mrna_strand>AATCGGCCGAAT--TGACATCCTTCCATGGTTCACCCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214269" ref_strand="+" ref_description="SGN-E214269 [cLEC-77-N11]">
      <seq>cgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtgggggaaaggggttcaccaatatcngaatggacgaacagacttttcttaatcacagagaaagagctgttgattacctatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33013" stop="30332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32713" g_stop="32452" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="441" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="595" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30830" i_stop="30710" i_length="121">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30709" g_stop="30632" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="672" r_length="77" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E214269" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32713" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30709" e_stop="30632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGAC-TTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCT</genome_strand>
        <mrna_strand>CGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGGAA.........................................................................................................................AGGGGTTCA-CCAATATCNGAATGGACGAACAGACTTTTCTTAATC-ACAGAGAAAGAGCTGTTGATTACCTATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721690" ref_strand="+" ref_description="SGN-E721690 [FC14DF02]">
      <seq>ttaaaattttattcttcaaattcagctttttcccctaatcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcaaacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33218" stop="30565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32918" g_stop="32866" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="329" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="508" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30865" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="628" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E721690" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32918" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAG</genome_strand>
        <mrna_strand>TTAAAATTTTATTCTTCAAATTCAGCTTTTTCCCCTAATCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAAACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287396" ref_strand="+" ref_description="SGN-E287396 [cLES-15-K2]">
      <seq>ttttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33212" stop="30632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32912" g_stop="32866" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="323" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="502" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30932" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="555" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E287396" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32912" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGC</genome_strand>
        <mrna_strand>TTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205014" ref_strand="+" ref_description="SGN-E205014 [cLEC-16-F9]">
      <seq>tcgcttaaaattttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33222" stop="30636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32922" g_stop="32866" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="333" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="512" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30936" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="561" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E205014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32922" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTC</genome_strand>
        <mrna_strand>TCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723750" ref_strand="+" ref_description="SGN-E723750 [FC21CH10]">
      <seq>ttcgcttaaaattttattcttcaaattcagctcccttagctattcttcactgattctgagaaaagatggcgtctaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacccagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcacccccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33223" stop="31345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32923" g_stop="32866" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="334" r_length="276" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="513" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E723750" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32923" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG</genome_strand>
        <mrna_strand>TTCGCTTAAAATTTTATTCTTCAAATTCAGCTCCCTTAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCTAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACCCAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCCCCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290110" ref_strand="+" ref_description="SGN-E290110 [cLET-5-N17]">
      <seq>attttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaagtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatnctttataatctctctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33213" stop="31351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32913" g_stop="32866" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="324" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31651" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="498" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E290110" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32913" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCT</genome_strand>
        <mrna_strand>ATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAA-GTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATNCTTTATAATCTCTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367510" ref_strand="+" ref_description="SGN-E367510 [cLPT-7-G10]">
      <seq>ttcaaccttttcgcttagaatttttttcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgactacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgcttctgaagaggaacgacagaaacaacagctccaatccattagtgcatcattggcgtcattgacacgagagacgggaccaaaagtggtgaaaggagacccggccaggcaagcggagacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33232" stop="31449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32932" g_stop="32866" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="343" r_length="276" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31749" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="420" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E367510" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32932" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGC</genome_strand>
        <mrna_strand>TTCAACCTTTTCGCTTAGAATTTTTTTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACTACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGCTTCTGAAGAGGAACGACAGAAACAACAGCTCCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGACCAAAAGTGGTGAAAGGAGACCCGGCCAGGCAAGCGGAGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367097" ref_strand="+" ref_description="SGN-E367097 [cLPT-5-I20]">
      <seq>ttcaaccttttcgcttagaatttttttcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-vfU47/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33232" stop="32208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32932" g_stop="32866" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32508" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="287" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-E367097" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32932" e_stop="32866"/>
          <exon e_start="32727" e_stop="32508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTA</genome_strand>
        <mrna_strand>TTCAACCTTTTCGCTTAGAATTTTTTTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>60</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5199" PGL_stop="4512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5199" e_stop="5148"/>
            <exon e_start="5036" e_stop="4512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5199" e_stop="5148" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="5147" i_stop="5037" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="5036" e_stop="4512" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5199" stop="5148"/>
              <exon start="5036" stop="4512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5199" stop="5148"/>
              <exon start="5036" stop="4700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCCTACTTCTGCAAGTCTCCCTTTAGATTCAAAACGTGATCCCAGAAGG : GATCCACGGCGCCTTGACCCAAGGCGAACAGCTGTCGCTGTTGAAGTATCACCACCGTTTGTTGCAGAACATAATATAAGTGCTACGCAATCTGCAATTCTGCAATCTGACATAAATCCTTCCAGTTCATCTAATATTGATATTGCAGTACCCTTGATGTCAAGTTCTGAATGTATGCCAATGACTTATCTGAAGATGGAAACTAACTCTATCACTGGTGAAAGTTCACCAGGACCAGTAGTCGGTTTGTTAGCTCCCAAAGAGGAAGGTCATGAGGAAGACCTGAATGAAGCTATTCCTGATCGCAAGTCGGATCCCACAATACATGTTCCACTATTATCTCCTGGCAAAGTAGAACCGGAATTGGTGCCAGAAATTCCATCTGAAGTTGGAGTAACTAATGAAATTTACTCTCCTTTGTTAGAAACAGATCAACTTTCTCCCCCTATATCAACTGCTGCAACTCCTGAAGATGCATGTGAGGACTTGCCTGCACTTCCGCCATTCATCGAACTGACTGATGAG</gDNA_template>
            <first_frame> N  A  Y  F  C  K  S  P  F  R  F  K  T  *  S  Q  K   : G  S  T  A  P  *  P  K  A  N  S  C  R  C  *  S  I  T  T  V  C  C  R  T  *  Y  K  C  Y  A  I  C  N  S  A  I  *  H  K  S  F  Q  F  I  *  Y  *  Y  C  S  T  L  D  V  K  F  *  M  Y  A  N  D  L  S  E  D  G  N  *  L  Y  H  W  *  K  F  T  R  T  S  S  R  F  V  S  S  Q  R  G  R  S  *  G  R  P  E  *  S  Y  S  *  S  Q  V  G  S  H  N  T  C  S  T  I  I  S  W  Q  S  R  T  G  I  G  A  R  N  S  I  *  S  W  S  N  *  *  N  L  L  S  F  V  R  N  R  S  T  F  S  P  Y  I  N  C  C  N  S  *  R  C  M  *  G  L  A  C  T  S  A  I  H  R  T  D  *  *  </first_frame>
            <second_frame>  M  P  T  S  A  S  L  P  L  D  S  K  R  D  P  R  R  :  D  P  R  R  L  D  P  R  R  T  A  V  A  V  E  V  S  P  P  F  V  A  E  H  N  I  S  A  T  Q  S  A  I  L  Q  S  D  I  N  P  S  S  S  S  N  I  D  I  A  V  P  L  M  S  S  S  E  C  M  P  M  T  Y  L  K  M  E  T  N  S  I  T  G  E  S  S  P  G  P  V  V  G  L  L  A  P  K  E  E  G  H  E  E  D  L  N  E  A  I  P  D  R  K  S  D  P  T  I  H  V  P  L  L  S  P  G  K  V  E  P  E  L  V  P  E  I  P  S  E  V  G  V  T  N  E  I  Y  S  P  L  L  E  T  D  Q  L  S  P  P  I  S  T  A  A  T  P  E  D  A  C  E  D  L  P  A  L  P  P  F  I  E  L  T  D  E </second_frame>
            <third_frame>   C  L  L  L  Q  V  S  L  *  I  Q  N  V  I  P  E  G :   I  H  G  A  L  T  Q  G  E  Q  L  S  L  L  K  Y  H  H  R  L  L  Q  N  I  I  *  V  L  R  N  L  Q  F  C  N  L  T  *  I  L  P  V  H  L  I  L  I  L  Q  Y  P  *  C  Q  V  L  N  V  C  Q  *  L  I  *  R  W  K  L  T  L  S  L  V  K  V  H  Q  D  Q  *  S  V  C  *  L  P  K  R  K  V  M  R  K  T  *  M  K  L  F  L  I  A  S  R  I  P  Q  Y  M  F  H  Y  Y  L  L  A  K  *  N  R  N  W  C  Q  K  F  H  L  K  L  E  *  L  M  K  F  T  L  L  C  *  K  Q  I  N  F  L  P  L  Y  Q  L  L  Q  L  L  K  M  H  V  R  T  C  L  H  F  R  H  S  S  N  *  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5198" stop="5148"/>
                    <exon start="5036" stop="4512"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPTSASLPLDSKRDPRRDPRRLDPRRTAVAVEVSPPFVAEHNISATQSAILQSDINPSSSSNIDIAVPLMSSSECMPMTYLKMETNSITGESSPGPVVGLLAPKEEGHEEDLNEAIPDRKSDPTIHVPLLSPGKVEPELVPEIPSEVGVTNEIYSPLLETDQLSPPISTAATPEDACEDLPALPPFIELTDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12235" PGL_stop="12873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12235" e_stop="12873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="12235" e_stop="12873" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12235" stop="12754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12249" stop="12873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATCCAGGGGGAAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATCAAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTTTTTCTGGCAAACTTAAAAAATACTTTTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</gDNA_template>
            <first_frame> V  Y  P  G  G  K  P  C  *  K  L  D  Y  L  G  N  K  K  C  V  N  V  T  K  N  S  N  T  L  S  N  N  T  W  K  C  Q  T  L  Q  G  Y  D  A  V  C  T  I  *  E  I  K  I  C  *  T  L  M  L  S  S  K  C  T  V  L  G  *  *  L  V  Q  T  V  L  I  P  N  G  V  T  N  L  S  T  A  *  S  T  I  C  Q  S  C  G  N  Q  L  T  F  T  S  V  I  *  T  I  S  S  A  F  Q  A  K  C  H  F  N  S  T  L  K  S  W  A  H  A  A  I  T  A  K  I  S  S  *  T  *  T  T  A  I  T  K  H  L  S  T  L  H  K  F  K  V  I  N  Q  T  A  V  T  A  K  I  L  E  S  E  V  L  F  G  W  A  I  W  D  L  L  R  G  Y  D  K  G  S  S  E  *  F  F  L  A  N  L  K  N  T  F  G  R  D  H  C  H  N  C  Q  L  L  T  E  N </first_frame>
            <second_frame>  F  I  Q  G  E  N  P  V  E  N  *  I  I  W  V  I  R  S  V  S  M  L  Q  K  I  A  I  H  Y  Q  T  I  L  G  S  V  R  H  Y  K  V  M  M  P  Y  V  Q  F  K  R  S  K  F  A  K  L  *  C  C  L  R  N  V  Q  C  L  V  N  N  L  S  K  Q  F  L  S  Q  M  A  *  Q  I  Y  P  P  L  N  L  P  S  V  N  L  V  E  I  S  *  L  L  H  L  L  S  E  P  S  V  Q  H  S  K  Q  N  A  I  L  T  P  R  *  K  A  G  L  M  L  Q  *  Q  Q  K  *  A  V  E  L  E  L  Q  P  L  P  S  I  C  Q  L  S  I  N  S  K  *  *  I  K  Q  Q  S  L  P  K  F  W  S  Q  K  S  Y  L  A  G  Q  Y  G  I  Y  *  E  V  M  T  K  D  H  Q  S  N  F  F  W  Q  T  *  K  I  L  L  A  G  I  T  A  I  I  A  S  Y  *  Q  K   </second_frame>
            <third_frame>   L  S  R  G  K  T  L  L  K  I  R  L  S  G  *  *  E  V  C  Q  C  Y  K  K  *  Q  Y  I  I  K  Q  Y  L  E  V  S  D  T  T  R  L  *  C  R  M  Y  N  L  R  D  Q  N  L  L  N  F  N  V  V  F  E  M  Y  S  A  W  L  I  T  C  P  N  S  S  Y  P  K  W  R  D  K  F  I  H  R  L  I  Y  H  L  S  I  L  W  K  S  A  N  F  Y  I  C  Y  L  N  H  Q  F  S  I  P  S  K  M  P  F  *  L  H  V  K  K  L  G  S  C  C  N  N  S  K  N  K  Q  L  N  L  N  Y  S  H  Y  Q  A  S  V  N  S  P  *  I  Q  S  N  K  S  N  S  S  H  C  Q  N  F  G  V  R  S  L  I  W  L  G  N  M  G  F  T  E  R  L  *  Q  R  I  I  R  V  I  F  S  G  K  L  K  K  Y  F  W  Q  G  S  L  P  *  L  P  V  T  D  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12363" stop="12587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRMYNLRDQNLLNFNVVFEMYSAWLITCPNSSYPKWRDKFIHRLIYHLSILWKSANFYICYLNHQFSIPSKMPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19684" PGL_stop="17083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19684" e_stop="19376"/>
            <exon e_start="18867" e_stop="18708"/>
            <exon e_start="17172" e_stop="17083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.955"/>
          <exon-intron don_prob="0.659" acc_prob="0.782" e_score="0.981"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="19684" e_stop="19376" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19375" i_stop="18868" i_length="508"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="18867" e_stop="18708" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.659" acc_prob="0.782">
            <gDNA_intron_boundary i_start="18707" i_stop="17173" i_length="1535"/>
          </intron>
          <exon e_serial="3" e_score="0.922">
            <gDNA_exon_boundary e_start="17172" e_stop="17083" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19684" stop="19376"/>
              <exon start="18867" stop="18708"/>
              <exon start="17172" stop="17083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGCGGCGGAGGACGGTGAAGTTTCGGTTATTACTCCGGTTTGTTCAAAACCCTAAGTATAAGTAAACCCTAAGCTACACATTTGTTTTTGTGAAGAGACCTTAACATGGCTGGACCAATTCGGGAGCAAGCTCTACCGCTACTCGCGTCCGCTAACAACCACGGTGATTTGTCAGTAAAACTATCTTCGTTGAAGCAATTGAAAGATGTATTGTTATCGGCGGAGCCATCTCAAGTTGCTGAGCTTCTCTCTTATTTAATTGACCTTCAGTCTTCACCTGAAAGTCTCTTACGCAAAGGCCTCATTGA : GGTAATTGAGGCGGTTGGGATGAAAGCAAAGGAACATTTGTTGGTATTAATGCCCGTATTATTTGCATGCTTAAAAGATATGAATTCTATGGTGGCAAAGCAATCAGTTATATCTGGCATGAAAATCTTTTGTGGTGTATTGGAGGAATTATCATCTCAG : TTTCACCGGCACGGTATAGTTGAAAGGTGGCTTGAAGAGCTCTGGACTTGGATGGTCAAATTCAAGGATACTGTCGTTGGAATTATTTTT</gDNA_template>
            <first_frame> R  R  R  R  T  V  K  F  R  L  L  L  R  F  V  Q  N  P  K  Y  K  *  T  L  S  Y  T  F  V  F  V  K  R  P  *  H  G  W  T  N  S  G  A  S  S  T  A  T  R  V  R  *  Q  P  R  *  F  V  S  K  T  I  F  V  E  A  I  E  R  C  I  V  I  G  G  A  I  S  S  C  *  A  S  L  L  F  N  *  P  S  V  F  T  *  K  S  L  T  Q  R  P  H  *  :  G  N  *  G  G  W  D  E  S  K  G  T  F  V  G  I  N  A  R  I  I  C  M  L  K  R  Y  E  F  Y  G  G  K  A  I  S  Y  I  W  H  E  N  L  L  W  C  I  G  G  I  I  I  S   : V  S  P  A  R  Y  S  *  K  V  A  *  R  A  L  D  L  D  G  Q  I  Q  G  Y  C  R  W  N  Y  F  </first_frame>
            <second_frame>  G  G  G  G  R  *  S  F  G  Y  Y  S  G  L  F  K  T  L  S  I  S  K  P  *  A  T  H  L  F  L  *  R  D  L  N  M  A  G  P  I  R  E  Q  A  L  P  L  L  A  S  A  N  N  H  G  D  L  S  V  K  L  S  S  L  K  Q  L  K  D  V  L  L  S  A  E  P  S  Q  V  A  E  L  L  S  Y  L  I  D  L  Q  S  S  P  E  S  L  L  R  K  G  L  I  E :   V  I  E  A  V  G  M  K  A  K  E  H  L  L  V  L  M  P  V  L  F  A  C  L  K  D  M  N  S  M  V  A  K  Q  S  V  I  S  G  M  K  I  F  C  G  V  L  E  E  L  S  S  Q  :  F  H  R  H  G  I  V  E  R  W  L  E  E  L  W  T  W  M  V  K  F  K  D  T  V  V  G  I  I  F </second_frame>
            <third_frame>   A  A  E  D  G  E  V  S  V  I  T  P  V  C  S  K  P  *  V  *  V  N  P  K  L  H  I  C  F  C  E  E  T  L  T  W  L  D  Q  F  G  S  K  L  Y  R  Y  S  R  P  L  T  T  T  V  I  C  Q  *  N  Y  L  R  *  S  N  *  K  M  Y  C  Y  R  R  S  H  L  K  L  L  S  F  S  L  I  *  L  T  F  S  L  H  L  K  V  S  Y  A  K  A  S  L   : R  *  L  R  R  L  G  *  K  Q  R  N  I  C  W  Y  *  C  P  Y  Y  L  H  A  *  K  I  *  I  L  W  W  Q  S  N  Q  L  Y  L  A  *  K  S  F  V  V  Y  W  R  N  Y  H  L  S :   F  T  G  T  V  *  L  K  G  G  L  K  S  S  G  L  G  W  S  N  S  R  I  L  S  L  E  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19590" stop="19376"/>
                    <exon start="18867" stop="18708"/>
                    <exon start="17172" stop="17083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDLNMAGPIREQALPLLASANNHGDLSVKLSSLKQLKDVLLSAEPSQVAELLSYLIDLQSSPESLLRKGLIEVIEAVGMKAKEHLLVLMPVLFACLKDMNSMVAKQSVISGMKIFCGVLEELSSQFHRHGIVERWLEELWTWMVKFKDTVVGIIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23854" PGL_stop="25602"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23854" e_stop="24235"/>
            <exon e_start="24547" e_stop="24608"/>
            <exon e_start="25173" e_stop="25602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23854" e_stop="24235" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24547" e_stop="24608" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.781">
            <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="25173" e_stop="25602" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23854" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23869" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23869" stop="24166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23873" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23875" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23875" stop="24235"/>
              <exon start="24547" stop="24570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23879" stop="24187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23880" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23881" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24037" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24072" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24079" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24084" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24084" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24172" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24568" stop="24608"/>
              <exon start="25173" stop="25557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25193" stop="25557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAGCTTGTATCTGCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG : ATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTG : CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATAATGTCAAAGCCTCGTGAAACCTGAACATTGAGATACA</gDNA_template>
            <first_frame> T  K  L  V  S  A  I  V  I  K  I  L  R  Q  F  R  D  G  G  L  G  S  E  Y  Q  I  N  P  Y  T  D  P  F  V  N  N  Q  S  W  S  T  *  R  R  G  M  D  T  A  A  E  G  R  I  Q  G  S  N  R  L  Y  I  N  E  Q  I  Q  R  *  *  L  V  P  Y  I  C  G  *  S  *  R  Y  S  L  E  G  E  V  L  V  C  A  *  P  S  Q  V  R  V  *  P  P  V  *  Y  P  C  Y  L  P  C  Y  R  S  *  T  *  V  A  *  T  *  W  Q  D  *  K   : D  V  Q  R  R  E  N  M  L  D  R  A  F  Q  A  A  M  G  K  E  L  :  P  Q  I  W  H  C  T  R  A  L  F  G  S  C  T  M  A  C  S  *  D  S  C  S  C  *  F  W  H  D  *  T  Q  R  *  C  G  H  I  Q  *  I  L  T  R  G  *  F  L  A  *  W  N  L  I  T  K  I  K  L  *  T  *  W  S  Y  L  K  V  *  F  S  P  H  F  E  E  S  *  F  H  V  M  *  A  G  *  T  R  L  F  E  M  Q  L  S  H  L  L  I  Y  F  N  V  L  Y  A  L  K  F  T  R  T  N  D  A  L  P  F  N  L  *  I  I  L  R  R  L  S  F  I  M  S  K  P  R  E  T  *  T  L  R  Y  </first_frame>
            <second_frame>  Q  S  L  Y  L  P  L  L  S  K  F  S  G  N  S  E  M  E  G  W  D  P  S  T  K  S  T  L  T  Q  I  P  L  L  T  I  K  A  G  P  R  D  G  A  A  W  T  Q  R  L  K  E  E  Y  K  A  L  I  A  Y  T  S  M  N  K  S  K  D  N  D  W  F  R  I  S  A  A  N  P  E  G  T  R  W  K  G  K  C  W  Y  V  H  N  L  L  K  Y  E  F  D  L  Q  F  D  I  P  V  T  Y  P  A  T  A  P  E  L  E  L  P  E  L  D  G  K  T  E  K  :  M  Y  R  G  G  K  I  C  L  T  V  H  F  K  P  L  W  A  K  N  C :   P  R  F  G  I  A  H  A  L  C  L  G  L  A  P  W  L  A  A  E  I  P  V  L  V  D  S  G  M  I  K  H  K  D  D  V  A  T  S  S  E  S  *  Q  G  D  D  F  *  H  D  G  T  *  S  P  R  *  N  C  K  H  N  G  V  T  *  K  C  N  F  P  L  T  L  R  S  H  S  F  M  L  C  K  P  G  E  P  G  S  L  R  C  N  C  H  I  C  *  F  I  L  T  C  F  M  P  S  N  L  L  G  L  M  M  L  F  L  L  I  Y  E  S  Y  *  G  G  *  V  S  *  C  Q  S  L  V  K  P  E  H  *  D  T </second_frame>
            <third_frame>   K  A  C  I  C  H  C  Y  Q  N  S  P  A  I  P  R  W  R  V  G  I  R  V  P  N  Q  P  L  H  R  S  L  C  *  Q  S  K  L  V  H  V  T  A  R  H  G  H  S  G  *  R  K  N  T  R  L  *  S  P  I  H  Q  *  T  N  P  K  I  M  I  G  S  V  Y  L  R  L  I  L  K  V  L  V  G  R  G  S  V  G  M  C  I  T  F  S  S  T  S  L  T  S  S  L  I  S  L  L  L  T  L  L  P  L  L  N  L  S  C  L  N  L  M  A  R  L  K  R :   C  T  E  E  G  K  Y  A  *  P  C  I  S  S  R  Y  G  Q  R  I   : A  P  D  L  A  L  H  T  R  F  V  W  V  L  H  H  G  L  Q  L  R  F  L  F  L  L  I  L  A  *  L  N  T  K  M  M  W  P  H  P  V  N  L  D  K  G  M  I  F  S  M  M  E  P  N  H  Q  D  K  T  V  N  I  M  E  L  L  E  S  V  I  F  P  S  L  *  G  V  I  V  S  C  Y  V  S  R  V  N  P  A  L  *  D  A  T  V  T  S  V  D  L  F  *  R  A  L  C  P  Q  I  Y  S  D  *  *  C  S  S  F  *  F  M  N  H  I  E  E  A  K  F  H  N  V  K  A  S  *  N  L  N  I  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23855" stop="24235"/>
                    <exon start="24547" stop="24608"/>
                    <exon start="25173" stop="25302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLYLPLLSKFSGNSEMEGWDPSTKSTLTQIPLLTIKAGPRDGAAWTQRLKEEYKALIAYTSMNKSKDNDWFRISAANPEGTRWKGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPELDGKTEKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPVLVDSGMIKHKDDVATSSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32962" PGL_stop="27153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32962" e_stop="32866"/>
            <exon e_start="32727" e_stop="32452"/>
            <exon e_start="31825" e_stop="31647"/>
            <exon e_start="30984" e_stop="30831"/>
            <exon e_start="30707" e_stop="30623"/>
            <exon e_start="29524" e_stop="29424"/>
            <exon e_start="29211" e_stop="28913"/>
            <exon e_start="28771" e_stop="28598"/>
            <exon e_start="28507" e_stop="28442"/>
            <exon e_start="28348" e_stop="28170"/>
            <exon e_start="28081" e_stop="27912"/>
            <exon e_start="27830" e_stop="27662"/>
            <exon e_start="27575" e_stop="27153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.453" acc_prob="0.997" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.994"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32962" e_stop="32866" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32727" e_stop="32452" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31825" e_stop="31647" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="30984" e_stop="30831" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30707" e_stop="30623" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29524" e_stop="29424" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.865">
            <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="29211" e_stop="28913" e_length="299"/>
          </exon>
          <intron i_serial="7" don_prob="0.453" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28771" e_stop="28598" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28507" e_stop="28442" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.926" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="28348" e_stop="28170" e_length="179"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="28081" e_stop="27912" e_length="170"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="27830" e_stop="27662" e_length="169"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="0.929">
            <gDNA_exon_boundary e_start="27575" e_stop="27153" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32962" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32944" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="29205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32944" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32936" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32926" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32923" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32922" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32918" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32913" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32912" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30936" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30920" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="29032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30849" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30844" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30648" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29459" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29155" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="28034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29043" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29043" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28944" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27912"/>
              <exon start="27830" stop="27768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28472" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27978" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611988" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27739" stop="27662"/>
              <exon start="27575" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27739" stop="27662"/>
              <exon start="27575" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGCCCCAATGAACACATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG : AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG : TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG : AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG : GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT : GTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG : GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG : TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG : AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG : GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG : TTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT : TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGATTAGCCAGAAAACATGTGTAATATTATTTTGTGTGTTACATTTTATGTGTTATTGGTCCGGAAGGAGGTTTCACATCCATGAATCTTTGTTCTTTATTCTTGTTTTTATTCCATTTGGGATCGTGTTTGTTTTCTGGTGAGGTTGAGGCGGAGGTTGTTATTGTAACTTTCATTCACTTGTGCTGTAATATTTTCAGTCAATAATGAA</gDNA_template>
            <first_frame> N  C  P  N  E  H  I  L  P  W  F  N  L  F  A  *  N  F  I  L  Q  I  Q  L  F  Q  L  F  F  T  D  S   : E  K  R  W  R  R  T  E  S  E  M  E  N  S  V  L  I  T  R  G  G  L  G  C  R  R  S  R  H  R  R  Q  R  M  K  T  W  F  A  M  T  T  V  Q  R  R  *  K  L  R  R  W  R  N  C  I  L  F  R  R  R  N  R  R  R  L  L  R  S  S  P  L  M  Y  S  A  L  P  F  L  K  R  N  D  R  N  N  S  C  N  P  L   : V  H  H  W  R  H  *  H  E  R  R  G  Q  K  W  *  K  E  T  Q  Q  G  K  R  R  R  Q  R  C  N  N  L  F  I  T  T  T  P  L  P  L  T  S  V  T  V  A  S  S  S  P  T  S  F  I  I  S  L  L  L  :  S  C  M  S  K  L  S  S  M  R  R  D  H  S  S  R  R  A  V  L  *  P  H  F  P  E  P  K  L  A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : R  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R :   C  L  *  M  I  S  S  S  T  G  I  Q  T  I  V  S  K  L  E  L  Y  L  P  E  P  I  T  P  C  S  C  T  T   : C  V  S  D  P  L  Q  K  S  W  R  I  L  V  L  R  T  S  Q  F  T  M  L  V  N  S  H  V  T  V  T  P  T  I  *  L  P  P  L  A  *  T  S  I  L  L  G  G  K  W  S  S  L  A  H  S  M  L  G  K  *  R  K  V  F  S  G  *  C  T  I  *  C  L  S  A  K  F  S  L  Y  T  L  A  A  I  W  E  K  K  E  M  *  P  S  S  L  D  Y  Q  :  E  L  G  R  Q  H  C  L  L  I  T  T  G  T  *  S  E  M  M  N  T  A  G  V  I  M  V  S  Q  T  L  K  E  V  A  M  P  N  A  *  T  L  Q  G  R  R  S  L  I  S  G  M  P  S  S  L  A  L  :  C  W  K  T  W  F  L  K  N  I  P  E  K  W  I  I  Q  T  N  L  *  Q  :  R  T  P  G  Q  H  I  Q  L  N  T  S  Q  M  L  K  Y  H  A  L  V  L  I  Q  R  M  S  F  S  L  H  V  M  H  S  A  C  F  H  Q  S  A  N  *  T  W  H  R  Q  C  T  T  S  S  V  A  T  Q  L  W :   W  Q  E  P  K  M  V  L  R  S  L  Q  Q  H  F  Q  H  V  S  V  Q  H  L  S  C  F  I  Q  P  N  M  Q  P  C  W  L  R  R  C  *  N  M  E  L  Q  D  G  L  *  T  L  A  G  Q  V  E   : V  M  D  Q  A  A  E  S  S  *  H  T  L  G  R  S  S  M  P  S  T  P  A  I  F  *  K  Q  N  T  R  R  P  R  Y  L  G  W  R  F  Q  L  H  L  R  E  Y  L  P  R  F  W  T  P  *  T  L :   G  P  T  R  R  H  T  R  I  P  C  *  S  W  E  A  Y  L  G  R  I  L  R  C  S  Q  T  T  R  L  E  V  I  A  T  *  L  R  R  S  W  Q  L  V  Q  T  S  N  *  R  R  I  C  L  S  D  G  L  A  K  Y  D  F  K  I  S  K  E  K  N  K  I  S  Q  K  T  C  V  I  L  F  C  V  L  H  F  M  C  Y  W  S  G  R  R  F  H  I  H  E  S  L  F  F  I  L  V  F  I  P  F  G  I  V  F  V  F  W  *  G  *  G  G  G  C  Y  C  N  F  H  S  L  V  L  *  Y  F  Q  S  I  M   </first_frame>
            <second_frame>  I  A  P  M  N  T  S  F  H  G  S  T  F  S  L  K  I  L  F  F  K  F  S  F  F  S  Y  S  S  L  I  L  :  R  K  D  G  V  E  R  S  R  K  W  R  I  Q  F  *  *  Q  E  E  D  W  A  A  E  D  P  D  T  E  D  R  G  *  K  R  G  L  P  *  R  Q  C  N  A  G  E  S  S  D  A  G  G  I  A  F  S  S  E  E  E  I  G  A  D  Y  S  D  Q  V  P  S  C  I  R  R  C  R  F  *  R  G  T  T  E  T  T  A  A  I  H  *  :  C  I  I  G  V  I  D  T  R  D  G  A  K  S  G  E  R  R  P  S  K  A  S  G  D  A  K  G  A  T  T  C  S  S  P  P  H  P  C  P  *  H  Q  *  Q  W  P  Q  V  H  P  H  P  L  *  S  L  S  C  * :   V  V  *  A  S  Y  Q  V  *  E  G  I  I  H  H  V  E  R  C  F  S  H  T  F  R  S  Q  N  W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E   : G  V  C  E  *  S  V  P  Q  L  G  S  K  Q  S  Y  Q  S  *  N  C  I  C  Q  S  L  S  L  L  V  H  A  Q  H  :  V  Y  P  T  H  S  R  R  A  G  G  F  W  Y  S  G  L  H  N  L  Q  C  W  S  I  P  M  *  P  L  H  P  L  Y  D  F  L  H  *  H  R  H  Q  S  C  *  E  G  N  G  H  P  W  H  T  V  C  W  G  N  E  E  R  S  F  R  G  N  A  L  S  N  A  *  A  P  N  S  L  S  T  L  W  L  Q  Y  G  K  R  R  R  C  S  P  L  L  W  I  I  R :   N  W  E  D  N  T  V  Y  *  S  Q  P  V  P  D  R  R  *  *  T  L  L  E  *  S  W  C  L  K  H  *  R  R  L  L  C  Q  M  H  R  P  C  K  G  E  G  A  *  Y  L  E  C  H  Q  V  W  H  C :   A  G  K  R  G  F  *  R  T  Y  P  R  S  G  L  Y  R  Q  I  C  N  R :   E  H  P  G  S  I  S  N  *  I  H  P  K  C  *  N  T  M  R  W  S  S  S  K  E  C  H  S  P  C  M  *  C  I  R  R  A  S  T  S  Q  Q  I  E  L  G  T  D  N  V  P  L  H  Q  W  L  H  S  F   : G  G  R  N  R  R  W  Y  *  G  A  Y  S  N  I  F  S  M  F  R  C  S  I  Y  H  A  S  S  N  Q  I  C  S  H  A  G  *  E  D  A  E  T  W  S  Y  R  M  A  C  E  H  W  L  V  R  W  K  :  L  W  I  R  Q  P  N  Q  V  S  I  H  *  E  D  H  R  C  H  P  L  R  R  S  S  E  S  R  I  Q  E  D  R  G  I  W  A  G  D  S  N  C  T  *  G  S  T  F  R  D  S  G  P  R  E  H   : L  A  R  Q  E  G  T  Q  G  Y  P  V  E  A  G  R  P  I  *  E  E  F  *  G  V  H  K  L  Q  D  W  K  *  *  Q  P  D  *  G  D  P  G  S  W  S  K  L  L  I  E  E  G  F  A  *  V  M  V  W  Q  N  M  T  L  K  Y  Q  K  R  K  I  R  L  A  R  K  H  V  *  Y  Y  F  V  C  Y  I  L  C  V  I  G  P  E  G  G  F  T  S  M  N  L  C  S  L  F  L  F  L  F  H  L  G  S  C  L  F  S  G  E  V  E  A  E  V  V  I  V  T  F  I  H  L  C  C  N  I  F  S  Q  *  *  </second_frame>
            <third_frame>   L  P  Q  *  T  H  P  S  M  V  Q  P  F  R  L  K  F  Y  S  S  N  S  A  F  S  A  I  L  H  *  F  * :   E  K  M  A  S  N  G  V  G  N  G  E  F  S  F  D  N  K  R  R  T  G  L  P  K  I  Q  T  Q  K  T  E  D  E  N  V  V  C  H  D  D  S  A  T  P  V  K  A  Q  T  L  E  E  L  H  S  L  Q  K  K  K  S  A  P  T  T  P  I  K  S  P  H  V  F  G  V  A  V  S  E  E  E  R  Q  K  Q  Q  L  Q  S  I  S :   A  S  L  A  S  L  T  R  E  T  G  P  K  V  V  K  G  D  P  A  R  Q  A  E  T  P  K  V  Q  Q  P  V  H  H  H  H  T  P  A  L  N  I  S  D  S  G  L  K  F  T  H  I  L  Y  N  L  S  P  A   : E  L  Y  E  Q  A  I  K  Y  E  K  G  S  F  I  T  S  S  G  A  L  A  T  L  S  G  A  K  T  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  :  V  F  V  N  D  Q  F  L  N  W  D  P  N  N  R  I  K  V  R  I  V  S  A  R  A  Y  H  S  L  F  M  H  N  M :   C  I  R  P  T  P  E  E  L  E  D  F  G  T  P  D  F  T  I  Y  N  A  G  Q  F  P  C  N  R  Y  T  H  Y  M  T  S  S  T  S  I  D  I  N  L  A  R  R  E  M  V  I  L  G  T  Q  Y  A  G  E  M  K  K  G  L  F  G  V  M  H  Y  L  M  P  K  R  Q  I  L  S  L  H  S  G  C  N  M  G  K  E  G  D  V  A  L  F  F  G  L  S   : G  T  G  K  T  T  L  S  T  D  H  N  R  Y  L  I  G  D  D  E  H  C  W  S  D  H  G  V  S  N  I  E  G  G  C  Y  A  K  C  I  D  L  A  R  E  K  E  P  D  I  W  N  A  I  K  F  G  T   : V  L  E  N  V  V  F  E  E  H  T  R  E  V  D  Y  T  D  K  S  V  T   : E  N  T  R  A  A  Y  P  I  E  Y  I  P  N  A  K  I  P  C  V  G  P  H  P  K  N  V  I  L  L  A  C  D  A  F  G  V  L  P  P  V  S  K  L  N  L  A  Q  T  M  Y  H  F  I  S  G  Y  T  A  L  :  V  A  G  T  E  D  G  I  K  E  P  T  A  T  F  S  A  C  F  G  A  A  F  I  M  L  H  P  T  K  Y  A  A  M  L  A  E  K  M  L  K  H  G  A  T  G  W  L  V  N  T  G  W  S  G  G  S :   Y  G  S  G  S  R  I  K  L  A  Y  T  R  K  I  I  D  A  I  H  S  G  D  L  L  K  A  E  Y  K  K  T  E  V  F  G  L  E  I  P  T  A  L  E  G  V  P  S  E  I  L  D  P  V  N  T  :  W  P  D  K  K  A  H  K  D  T  L  L  K  L  G  G  L  F  R  K  N  F  E  V  F  T  N  Y  K  I  G  S  D  S  N  L  T  E  E  I  L  A  A  G  P  N  F  *  L  K  K  D  L  P  E  *  W  F  G  K  I  *  L  *  N  I  K  R  E  K  *  D  *  P  E  N  M  C  N  I  I  L  C  V  T  F  Y  V  L  L  V  R  K  E  V  S  H  P  *  I  F  V  L  Y  S  C  F  Y  S  I  W  D  R  V  C  F  L  V  R  L  R  R  R  L  L  L  *  L  S  F  T  C  A  V  I  F  S  V  N  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32726" stop="32452"/>
                    <exon start="31825" stop="31647"/>
                    <exon start="30984" stop="30831"/>
                    <exon start="30707" stop="30623"/>
                    <exon start="29524" stop="29424"/>
                    <exon start="29211" stop="28913"/>
                    <exon start="28771" stop="28598"/>
                    <exon start="28507" stop="28442"/>
                    <exon start="28348" stop="28170"/>
                    <exon start="28081" stop="27912"/>
                    <exon start="27830" stop="27662"/>
                    <exon start="27575" stop="27432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1992</number_coding_nucleotides>
                  <number_encoded_amino_acids>664</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASNGVGNGEFSFDNKRRTGLPKIQTQKTEDENVVCHDDSATPVKAQTLEELHSLQKKKSAPTTPIKSPHVFGVAVSEEERQKQQLQSISASLASLTRETGPKVVKGDPARQAETPKVQQPVHHHHTPALNISDSGLKFTHILYNLSPAELYEQAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVRDETTEDDLWWGKGSPNIEMDEQTFLINRERAVDYLCSLEKVFVNDQFLNWDPNNRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARREMVILGTQYAGEMKKGLFGVMHYLMPKRQILSLHSGCNMGKEGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWSDHGVSNIEGGCYAKCIDLAREKEPDIWNAIKFGTVLENVVFEEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMLKHGATGWLVNTGWSGGSYGSGSRIKLAYTRKIIDAIHSGDLLKAEYKKTEVFGLEIPTALEGVPSEILDPVNTWPDKKAHKDTLLKLGGLFRKNFEVFTNYKIGSDSNLTEEILAAGPNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27427" stop="27221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICLSDGLAKYDFKISKEKNKISQKTCVILFCVLHFMCYWSGRRFHIHESLFFILVFIPFGIVFVFW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32932" e_stop="32866"/>
            <exon e_start="32727" e_stop="32452"/>
            <exon e_start="31825" e_stop="31647"/>
            <exon e_start="30984" e_stop="30831"/>
            <exon e_start="30709" e_stop="30623"/>
            <exon e_start="29524" e_stop="29424"/>
            <exon e_start="29211" e_stop="28913"/>
            <exon e_start="28771" e_stop="28598"/>
            <exon e_start="28507" e_stop="28442"/>
            <exon e_start="28348" e_stop="28170"/>
            <exon e_start="28081" e_stop="27912"/>
            <exon e_start="27830" e_stop="27662"/>
            <exon e_start="27575" e_stop="27153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.923"/>
          <exon-intron don_prob="0.994" acc_prob="0.865" e_score="0.881"/>
          <exon-intron don_prob="0.453" acc_prob="0.997" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.994"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32932" e_stop="32866" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32727" e_stop="32452" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31825" e_stop="31647" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="30984" e_stop="30831" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30830" i_stop="30710" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="0.923">
            <gDNA_exon_boundary e_start="30709" e_stop="30623" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098"/>
          </intron>
          <exon e_serial="6" e_score="0.881">
            <gDNA_exon_boundary e_start="29524" e_stop="29424" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.865">
            <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="29211" e_stop="28913" e_length="299"/>
          </exon>
          <intron i_serial="7" don_prob="0.453" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28771" e_stop="28598" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28507" e_stop="28442" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.926" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="28348" e_stop="28170" e_length="179"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="28081" e_stop="27912" e_length="170"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="27830" e_stop="27662" e_length="169"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="0.929">
            <gDNA_exon_boundary e_start="27575" e_stop="27153" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32923" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32922" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32918" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32913" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32912" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32713" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30709" stop="30632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30648" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29459" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29155" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="28034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29043" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29043" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28944" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27912"/>
              <exon start="27830" stop="27768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28472" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27978" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611988" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27739" stop="27662"/>
              <exon start="27575" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27739" stop="27662"/>
              <exon start="27575" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG : AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG : TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG : AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : AGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG : GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT : GTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG : GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG : TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG : AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG : GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG : TTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT : TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGATTAGCCAGAAAACATGTGTAATATTATTTTGTGTGTTACATTTTATGTGTTATTGGTCCGGAAGGAGGTTTCACATCCATGAATCTTTGTTCTTTATTCTTGTTTTTATTCCATTTGGGATCGTGTTTGTTTTCTGGTGAGGTTGAGGCGGAGGTTGTTATTGTAACTTTCATTCACTTGTGCTGTAATATTTTCAGTCAATAATGAA</gDNA_template>
            <first_frame> F  N  L  F  A  *  N  F  I  L  Q  I  Q  L  F  Q  L  F  F  T  D  S   : E  K  R  W  R  R  T  E  S  E  M  E  N  S  V  L  I  T  R  G  G  L  G  C  R  R  S  R  H  R  R  Q  R  M  K  T  W  F  A  M  T  T  V  Q  R  R  *  K  L  R  R  W  R  N  C  I  L  F  R  R  R  N  R  R  R  L  L  R  S  S  P  L  M  Y  S  A  L  P  F  L  K  R  N  D  R  N  N  S  C  N  P  L   : V  H  H  W  R  H  *  H  E  R  R  G  Q  K  W  *  K  E  T  Q  Q  G  K  R  R  R  Q  R  C  N  N  L  F  I  T  T  T  P  L  P  L  T  S  V  T  V  A  S  S  S  P  T  S  F  I  I  S  L  L  L  :  S  C  M  S  K  L  S  S  M  R  R  D  H  S  S  R  R  A  V  L  *  P  H  F  P  E  P  K  L  A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : K  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E   : G  V  C  E  *  S  V  P  Q  L  G  S  K  Q  S  Y  Q  S  *  N  C  I  C  Q  S  L  S  L  L  V  H  A  Q  H  :  V  Y  P  T  H  S  R  R  A  G  G  F  W  Y  S  G  L  H  N  L  Q  C  W  S  I  P  M  *  P  L  H  P  L  Y  D  F  L  H  *  H  R  H  Q  S  C  *  E  G  N  G  H  P  W  H  T  V  C  W  G  N  E  E  R  S  F  R  G  N  A  L  S  N  A  *  A  P  N  S  L  S  T  L  W  L  Q  Y  G  K  R  R  R  C  S  P  L  L  W  I  I  R :   N  W  E  D  N  T  V  Y  *  S  Q  P  V  P  D  R  R  *  *  T  L  L  E  *  S  W  C  L  K  H  *  R  R  L  L  C  Q  M  H  R  P  C  K  G  E  G  A  *  Y  L  E  C  H  Q  V  W  H  C :   A  G  K  R  G  F  *  R  T  Y  P  R  S  G  L  Y  R  Q  I  C  N  R :   E  H  P  G  S  I  S  N  *  I  H  P  K  C  *  N  T  M  R  W  S  S  S  K  E  C  H  S  P  C  M  *  C  I  R  R  A  S  T  S  Q  Q  I  E  L  G  T  D  N  V  P  L  H  Q  W  L  H  S  F   : G  G  R  N  R  R  W  Y  *  G  A  Y  S  N  I  F  S  M  F  R  C  S  I  Y  H  A  S  S  N  Q  I  C  S  H  A  G  *  E  D  A  E  T  W  S  Y  R  M  A  C  E  H  W  L  V  R  W  K  :  L  W  I  R  Q  P  N  Q  V  S  I  H  *  E  D  H  R  C  H  P  L  R  R  S  S  E  S  R  I  Q  E  D  R  G  I  W  A  G  D  S  N  C  T  *  G  S  T  F  R  D  S  G  P  R  E  H   : L  A  R  Q  E  G  T  Q  G  Y  P  V  E  A  G  R  P  I  *  E  E  F  *  G  V  H  K  L  Q  D  W  K  *  *  Q  P  D  *  G  D  P  G  S  W  S  K  L  L  I  E  E  G  F  A  *  V  M  V  W  Q  N  M  T  L  K  Y  Q  K  R  K  I  R  L  A  R  K  H  V  *  Y  Y  F  V  C  Y  I  L  C  V  I  G  P  E  G  G  F  T  S  M  N  L  C  S  L  F  L  F  L  F  H  L  G  S  C  L  F  S  G  E  V  E  A  E  V  V  I  V  T  F  I  H  L  C  C  N  I  F  S  Q  *  *  </first_frame>
            <second_frame>  S  T  F  S  L  K  I  L  F  F  K  F  S  F  F  S  Y  S  S  L  I  L  :  R  K  D  G  V  E  R  S  R  K  W  R  I  Q  F  *  *  Q  E  E  D  W  A  A  E  D  P  D  T  E  D  R  G  *  K  R  G  L  P  *  R  Q  C  N  A  G  E  S  S  D  A  G  G  I  A  F  S  S  E  E  E  I  G  A  D  Y  S  D  Q  V  P  S  C  I  R  R  C  R  F  *  R  G  T  T  E  T  T  A  A  I  H  *  :  C  I  I  G  V  I  D  T  R  D  G  A  K  S  G  E  R  R  P  S  K  A  S  G  D  A  K  G  A  T  T  C  S  S  P  P  H  P  C  P  *  H  Q  *  Q  W  P  Q  V  H  P  H  P  L  *  S  L  S  C  * :   V  V  *  A  S  Y  Q  V  *  E  G  I  I  H  H  V  E  R  C  F  S  H  T  F  R  S  Q  N  W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  R  G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  :  V  F  V  N  D  Q  F  L  N  W  D  P  N  N  R  I  K  V  R  I  V  S  A  R  A  Y  H  S  L  F  M  H  N  M :   C  I  R  P  T  P  E  E  L  E  D  F  G  T  P  D  F  T  I  Y  N  A  G  Q  F  P  C  N  R  Y  T  H  Y  M  T  S  S  T  S  I  D  I  N  L  A  R  R  E  M  V  I  L  G  T  Q  Y  A  G  E  M  K  K  G  L  F  G  V  M  H  Y  L  M  P  K  R  Q  I  L  S  L  H  S  G  C  N  M  G  K  E  G  D  V  A  L  F  F  G  L  S   : G  T  G  K  T  T  L  S  T  D  H  N  R  Y  L  I  G  D  D  E  H  C  W  S  D  H  G  V  S  N  I  E  G  G  C  Y  A  K  C  I  D  L  A  R  E  K  E  P  D  I  W  N  A  I  K  F  G  T   : V  L  E  N  V  V  F  E  E  H  T  R  E  V  D  Y  T  D  K  S  V  T   : E  N  T  R  A  A  Y  P  I  E  Y  I  P  N  A  K  I  P  C  V  G  P  H  P  K  N  V  I  L  L  A  C  D  A  F  G  V  L  P  P  V  S  K  L  N  L  A  Q  T  M  Y  H  F  I  S  G  Y  T  A  L  :  V  A  G  T  E  D  G  I  K  E  P  T  A  T  F  S  A  C  F  G  A  A  F  I  M  L  H  P  T  K  Y  A  A  M  L  A  E  K  M  L  K  H  G  A  T  G  W  L  V  N  T  G  W  S  G  G  S :   Y  G  S  G  S  R  I  K  L  A  Y  T  R  K  I  I  D  A  I  H  S  G  D  L  L  K  A  E  Y  K  K  T  E  V  F  G  L  E  I  P  T  A  L  E  G  V  P  S  E  I  L  D  P  V  N  T  :  W  P  D  K  K  A  H  K  D  T  L  L  K  L  G  G  L  F  R  K  N  F  E  V  F  T  N  Y  K  I  G  S  D  S  N  L  T  E  E  I  L  A  A  G  P  N  F  *  L  K  K  D  L  P  E  *  W  F  G  K  I  *  L  *  N  I  K  R  E  K  *  D  *  P  E  N  M  C  N  I  I  L  C  V  T  F  Y  V  L  L  V  R  K  E  V  S  H  P  *  I  F  V  L  Y  S  C  F  Y  S  I  W  D  R  V  C  F  L  V  R  L  R  R  R  L  L  L  *  L  S  F  T  C  A  V  I  F  S  V  N  N  E </second_frame>
            <third_frame>   Q  P  F  R  L  K  F  Y  S  S  N  S  A  F  S  A  I  L  H  *  F  * :   E  K  M  A  S  N  G  V  G  N  G  E  F  S  F  D  N  K  R  R  T  G  L  P  K  I  Q  T  Q  K  T  E  D  E  N  V  V  C  H  D  D  S  A  T  P  V  K  A  Q  T  L  E  E  L  H  S  L  Q  K  K  K  S  A  P  T  T  P  I  K  S  P  H  V  F  G  V  A  V  S  E  E  E  R  Q  K  Q  Q  L  Q  S  I  S :   A  S  L  A  S  L  T  R  E  T  G  P  K  V  V  K  G  D  P  A  R  Q  A  E  T  P  K  V  Q  Q  P  V  H  H  H  H  T  P  A  L  N  I  S  D  S  G  L  K  F  T  H  I  L  Y  N  L  S  P  A   : E  L  Y  E  Q  A  I  K  Y  E  K  G  S  F  I  T  S  S  G  A  L  A  T  L  S  G  A  K  T  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R :   C  L  *  M  I  S  S  S  T  G  I  Q  T  I  V  S  K  L  E  L  Y  L  P  E  P  I  T  P  C  S  C  T  T   : C  V  S  D  P  L  Q  K  S  W  R  I  L  V  L  R  T  S  Q  F  T  M  L  V  N  S  H  V  T  V  T  P  T  I  *  L  P  P  L  A  *  T  S  I  L  L  G  G  K  W  S  S  L  A  H  S  M  L  G  K  *  R  K  V  F  S  G  *  C  T  I  *  C  L  S  A  K  F  S  L  Y  T  L  A  A  I  W  E  K  K  E  M  *  P  S  S  L  D  Y  Q  :  E  L  G  R  Q  H  C  L  L  I  T  T  G  T  *  S  E  M  M  N  T  A  G  V  I  M  V  S  Q  T  L  K  E  V  A  M  P  N  A  *  T  L  Q  G  R  R  S  L  I  S  G  M  P  S  S  L  A  L  :  C  W  K  T  W  F  L  K  N  I  P  E  K  W  I  I  Q  T  N  L  *  Q  :  R  T  P  G  Q  H  I  Q  L  N  T  S  Q  M  L  K  Y  H  A  L  V  L  I  Q  R  M  S  F  S  L  H  V  M  H  S  A  C  F  H  Q  S  A  N  *  T  W  H  R  Q  C  T  T  S  S  V  A  T  Q  L  W :   W  Q  E  P  K  M  V  L  R  S  L  Q  Q  H  F  Q  H  V  S  V  Q  H  L  S  C  F  I  Q  P  N  M  Q  P  C  W  L  R  R  C  *  N  M  E  L  Q  D  G  L  *  T  L  A  G  Q  V  E   : V  M  D  Q  A  A  E  S  S  *  H  T  L  G  R  S  S  M  P  S  T  P  A  I  F  *  K  Q  N  T  R  R  P  R  Y  L  G  W  R  F  Q  L  H  L  R  E  Y  L  P  R  F  W  T  P  *  T  L :   G  P  T  R  R  H  T  R  I  P  C  *  S  W  E  A  Y  L  G  R  I  L  R  C  S  Q  T  T  R  L  E  V  I  A  T  *  L  R  R  S  W  Q  L  V  Q  T  S  N  *  R  R  I  C  L  S  D  G  L  A  K  Y  D  F  K  I  S  K  E  K  N  K  I  S  Q  K  T  C  V  I  L  F  C  V  L  H  F  M  C  Y  W  S  G  R  R  F  H  I  H  E  S  L  F  F  I  L  V  F  I  P  F  G  I  V  F  V  F  W  *  G  *  G  G  G  C  Y  C  N  F  H  S  L  V  L  *  Y  F  Q  S  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30851" stop="30831"/>
                    <exon start="30709" stop="30623"/>
                    <exon start="29524" stop="29424"/>
                    <exon start="29211" stop="28913"/>
                    <exon start="28771" stop="28598"/>
                    <exon start="28507" stop="28442"/>
                    <exon start="28348" stop="28170"/>
                    <exon start="28081" stop="27912"/>
                    <exon start="27830" stop="27662"/>
                    <exon start="27575" stop="27432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1407</number_coding_nucleotides>
                  <number_encoded_amino_acids>469</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRPLVGKRGSPNIEMDEQTFLINRERAVDYLCSLEKVFVNDQFLNWDPNNRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARREMVILGTQYAGEMKKGLFGVMHYLMPKRQILSLHSGCNMGKEGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWSDHGVSNIEGGCYAKCIDLAREKEPDIWNAIKFGTVLENVVFEEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMLKHGATGWLVNTGWSGGSYGSGSRIKLAYTRKIIDAIHSGDLLKAEYKKTEVFGLEIPTALEGVPSEILDPVNTWPDKKAHKDTLLKLGGLFRKNFEVFTNYKIGSDSNLTEEILAAGPNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27427" stop="27221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICLSDGLAKYDFKISKEKNKISQKTCVILFCVLHFMCYWSGRRFHIHESLFFILVFIPFGIVFVFW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31778" stop="31647"/>
                    <exon start="30984" stop="30922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KETQQGKRRRQRCNNLFITTTPLPLTSVTVASSSPTSFIISLLLSCMSKLSSMRRDHSSRRAVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32962" e_stop="32866"/>
            <exon e_start="32727" e_stop="32452"/>
            <exon e_start="31825" e_stop="31647"/>
            <exon e_start="30984" e_stop="30831"/>
            <exon e_start="30707" e_stop="30623"/>
            <exon e_start="29524" e_stop="29424"/>
            <exon e_start="28771" e_stop="28727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32962" e_stop="32866" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32727" e_stop="32452" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31825" e_stop="31647" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="30984" e_stop="30831" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30707" e_stop="30623" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29524" e_stop="29424" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28771" e_stop="28727" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32962" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32944" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32936" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32923" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32922" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32918" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32913" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32912" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31695" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="28771" stop="28727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30936" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGCCCCAATGAACACATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG : AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG : TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG : AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG : GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT : GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGA</gDNA_template>
            <first_frame> N  C  P  N  E  H  I  L  P  W  F  N  L  F  A  *  N  F  I  L  Q  I  Q  L  F  Q  L  F  F  T  D  S   : E  K  R  W  R  R  T  E  S  E  M  E  N  S  V  L  I  T  R  G  G  L  G  C  R  R  S  R  H  R  R  Q  R  M  K  T  W  F  A  M  T  T  V  Q  R  R  *  K  L  R  R  W  R  N  C  I  L  F  R  R  R  N  R  R  R  L  L  R  S  S  P  L  M  Y  S  A  L  P  F  L  K  R  N  D  R  N  N  S  C  N  P  L   : V  H  H  W  R  H  *  H  E  R  R  G  Q  K  W  *  K  E  T  Q  Q  G  K  R  R  R  Q  R  C  N  N  L  F  I  T  T  T  P  L  P  L  T  S  V  T  V  A  S  S  S  P  T  S  F  I  I  S  L  L  L  :  S  C  M  S  K  L  S  S  M  R  R  D  H  S  S  R  R  A  V  L  *  P  H  F  P  E  P  K  L  A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : R  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R :   C  L  *  M  I  S  S  S  T  G  I  Q  T  I  V  S  K  L  E  L  Y  L  P  E  P  I  T  P  C  S  C  T  T   : *  T  G  K  T  T  L  S  T  D  H  N  R  Y  L  </first_frame>
            <second_frame>  I  A  P  M  N  T  S  F  H  G  S  T  F  S  L  K  I  L  F  F  K  F  S  F  F  S  Y  S  S  L  I  L  :  R  K  D  G  V  E  R  S  R  K  W  R  I  Q  F  *  *  Q  E  E  D  W  A  A  E  D  P  D  T  E  D  R  G  *  K  R  G  L  P  *  R  Q  C  N  A  G  E  S  S  D  A  G  G  I  A  F  S  S  E  E  E  I  G  A  D  Y  S  D  Q  V  P  S  C  I  R  R  C  R  F  *  R  G  T  T  E  T  T  A  A  I  H  *  :  C  I  I  G  V  I  D  T  R  D  G  A  K  S  G  E  R  R  P  S  K  A  S  G  D  A  K  G  A  T  T  C  S  S  P  P  H  P  C  P  *  H  Q  *  Q  W  P  Q  V  H  P  H  P  L  *  S  L  S  C  * :   V  V  *  A  S  Y  Q  V  *  E  G  I  I  H  H  V  E  R  C  F  S  H  T  F  R  S  Q  N  W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E   : G  V  C  E  *  S  V  P  Q  L  G  S  K  Q  S  Y  Q  S  *  N  C  I  C  Q  S  L  S  L  L  V  H  A  Q  H  :  E  L  G  R  Q  H  C  L  L  I  T  T  G  T  * </second_frame>
            <third_frame>   L  P  Q  *  T  H  P  S  M  V  Q  P  F  R  L  K  F  Y  S  S  N  S  A  F  S  A  I  L  H  *  F  * :   E  K  M  A  S  N  G  V  G  N  G  E  F  S  F  D  N  K  R  R  T  G  L  P  K  I  Q  T  Q  K  T  E  D  E  N  V  V  C  H  D  D  S  A  T  P  V  K  A  Q  T  L  E  E  L  H  S  L  Q  K  K  K  S  A  P  T  T  P  I  K  S  P  H  V  F  G  V  A  V  S  E  E  E  R  Q  K  Q  Q  L  Q  S  I  S :   A  S  L  A  S  L  T  R  E  T  G  P  K  V  V  K  G  D  P  A  R  Q  A  E  T  P  K  V  Q  Q  P  V  H  H  H  H  T  P  A  L  N  I  S  D  S  G  L  K  F  T  H  I  L  Y  N  L  S  P  A   : E  L  Y  E  Q  A  I  K  Y  E  K  G  S  F  I  T  S  S  G  A  L  A  T  L  S  G  A  K  T  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  :  V  F  V  N  D  Q  F  L  N  W  D  P  N  N  R  I  K  V  R  I  V  S  A  R  A  Y  H  S  L  F  M  H  N  M :   N  W  E  D  N  T  V  Y  *  S  Q  P  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32726" stop="32452"/>
                    <exon start="31825" stop="31647"/>
                    <exon start="30984" stop="30831"/>
                    <exon start="30707" stop="30623"/>
                    <exon start="29524" stop="29424"/>
                    <exon start="28771" stop="28744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASNGVGNGEFSFDNKRRTGLPKIQTQKTEDENVVCHDDSATPVKAQTLEELHSLQKKKSAPTTPIKSPHVFGVAVSEEERQKQQLQSISASLASLTRETGPKVVKGDPARQAETPKVQQPVHHHHTPALNISDSGLKFTHILYNLSPAELYEQAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVRDETTEDDLWWGKGSPNIEMDEQTFLINRERAVDYLCSLEKVFVNDQFLNWDPNNRIKVRIVSARAYHSLFMHNMNWEDNTVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="32962" e_stop="32866"/>
            <exon e_start="32727" e_stop="32452"/>
            <exon e_start="31825" e_stop="31647"/>
            <exon e_start="30984" e_stop="30831"/>
            <exon e_start="30707" e_stop="29947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="0.970"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="0.994"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="32962" e_stop="32866" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32727" e_stop="32452" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31825" e_stop="31647" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="30984" e_stop="30831" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="30707" e_stop="29947" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32962" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32923" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32922" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32918" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32913" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32912" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30899" stop="30831"/>
              <exon start="30707" stop="29947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30898" stop="30831"/>
              <exon start="30707" stop="30170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGCCCCAATGAACACATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG : AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG : TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG : AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATC</gDNA_template>
            <first_frame> N  C  P  N  E  H  I  L  P  W  F  N  L  F  A  *  N  F  I  L  Q  I  Q  L  F  Q  L  F  F  T  D  S   : E  K  R  W  R  R  T  E  S  E  M  E  N  S  V  L  I  T  R  G  G  L  G  C  R  R  S  R  H  R  R  Q  R  M  K  T  W  F  A  M  T  T  V  Q  R  R  *  K  L  R  R  W  R  N  C  I  L  F  R  R  R  N  R  R  R  L  L  R  S  S  P  L  M  Y  S  A  L  P  F  L  K  R  N  D  R  N  N  S  C  N  P  L   : V  H  H  W  R  H  *  H  E  R  R  G  Q  K  W  *  K  E  T  Q  Q  G  K  R  R  R  Q  R  C  N  N  L  F  I  T  T  T  P  L  P  L  T  S  V  T  V  A  S  S  S  P  T  S  F  I  I  S  L  L  L  :  S  C  M  S  K  L  S  S  M  R  R  D  H  S  S  R  R  A  V  L  *  P  H  F  P  E  P  K  L  A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : R  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R  Y  V  K  Q  Y  Y  H  F  I  S  L  K  S  A  S  V  I  I  F  L  D  A  L  K  L  S  *  S  C  *  C  Q  R  L  *  K  L  C  I  C  Y  V  S  P  L  L  S  A  A  A  S  Y  H  V  Y  F  L  S  *  K  N  M  *  L  V  P  H  *  N  N  I  S  Q  *  I  I  K  F  Q  N  L  R  G  E  T  N  S  H  L  V  I  L  *  *  S  K  G  V  S  Y  S  P  C  *  *  N  N  V  F  V  *  S  S  Y  Y  *  K  K  N  I  F  V  C  R  G  V  *  N  G  Y  S  S  C  H  N  M  Y  V  T  L  S  L  C  N  Y  Y  S  *  S  H  *  R  N  F  V  I  Q  F  L  S  *  F  M  G  L  I  M  A  T  R  H  S  C  L  W  *  N  G  I  F  L  I  F  P  *  E  W  I  C  H  N  N  V  S  V  *  P  L  I  N  M  Y  T  C  S  T  T  N  L  H  *  V  L  V  P  I  C  V  S  T  T  Y  K  L  I </first_frame>
            <second_frame>  I  A  P  M  N  T  S  F  H  G  S  T  F  S  L  K  I  L  F  F  K  F  S  F  F  S  Y  S  S  L  I  L  :  R  K  D  G  V  E  R  S  R  K  W  R  I  Q  F  *  *  Q  E  E  D  W  A  A  E  D  P  D  T  E  D  R  G  *  K  R  G  L  P  *  R  Q  C  N  A  G  E  S  S  D  A  G  G  I  A  F  S  S  E  E  E  I  G  A  D  Y  S  D  Q  V  P  S  C  I  R  R  C  R  F  *  R  G  T  T  E  T  T  A  A  I  H  *  :  C  I  I  G  V  I  D  T  R  D  G  A  K  S  G  E  R  R  P  S  K  A  S  G  D  A  K  G  A  T  T  C  S  S  P  P  H  P  C  P  *  H  Q  *  Q  W  P  Q  V  H  P  H  P  L  *  S  L  S  C  * :   V  V  *  A  S  Y  Q  V  *  E  G  I  I  H  H  V  E  R  C  F  S  H  T  F  R  S  Q  N  W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E  G  M  L  N  N  I  I  I  S  F  H  *  S  L  L  P  L  S  F  F  *  M  R  *  S  Y  P  K  V  V  N  V  N  G  Y  R  N  Y  A  Y  V  M  F  P  P  C  L  V  L  P  R  H  T  M  F  I  F  L  V  K  R  T  C  N  *  Y  L  I  K  I  I  S  V  N  K  *  L  N  S  R  I  *  G  E  R  Q  I  V  I  L  S  F  F  D  N  L  K  A  C  L  I  P  H  V  N  K  I  M  Y  L  Y  S  R  A  T  I  K  K  K  I  F  L  F  V  V  V  Y  E  M  A  T  V  A  A  I  T  C  M  L  H  C  L  Y  V  I  I  I  L  S  P  I  R  E  I  L  *  S  N  F  C  H  D  S  W  A  *  L  W  L  Q  D  T  P  V  Y  G  E  T  E  F  S  S  S  S  P  R  N  G  Y  V  T  I  T  Y  L  S  S  L  *  *  I  C  T  H  V  L  Q  Q  T  C  T  E  F  W  C  Q  Y  A  Y  L  L  H  T  N  L   </second_frame>
            <third_frame>   L  P  Q  *  T  H  P  S  M  V  Q  P  F  R  L  K  F  Y  S  S  N  S  A  F  S  A  I  L  H  *  F  * :   E  K  M  A  S  N  G  V  G  N  G  E  F  S  F  D  N  K  R  R  T  G  L  P  K  I  Q  T  Q  K  T  E  D  E  N  V  V  C  H  D  D  S  A  T  P  V  K  A  Q  T  L  E  E  L  H  S  L  Q  K  K  K  S  A  P  T  T  P  I  K  S  P  H  V  F  G  V  A  V  S  E  E  E  R  Q  K  Q  Q  L  Q  S  I  S :   A  S  L  A  S  L  T  R  E  T  G  P  K  V  V  K  G  D  P  A  R  Q  A  E  T  P  K  V  Q  Q  P  V  H  H  H  H  T  P  A  L  N  I  S  D  S  G  L  K  F  T  H  I  L  Y  N  L  S  P  A   : E  L  Y  E  Q  A  I  K  Y  E  K  G  S  F  I  T  S  S  G  A  L  A  T  L  S  G  A  K  T  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  V  C  *  T  I  L  S  F  H  F  T  K  V  C  F  R  Y  H  F  F  R  C  A  K  V  I  L  K  L  L  M  S  T  V  I  E  T  M  H  M  L  C  F  P  L  A  *  C  C  R  V  I  P  C  L  F  S  *  L  K  E  H  V  I  S  T  S  L  K  *  Y  Q  S  I  N  N  *  I  P  E  F  E  G  R  D  K  *  S  S  C  H  S  L  I  I  *  R  R  V  L  F  P  M  L  I  K  *  C  I  C  I  V  E  L  L  L  K  K  K  Y  F  C  L  S  W  C  M  K  W  L  Q  *  L  P  *  H  V  C  Y  I  V  F  M  *  L  L  F  L  V  P  L  E  K  F  C  D  P  I  S  V  M  I  H  G  P  N  Y  G  Y  K  T  L  L  F  M  V  K  R  N  F  P  H  L  P  L  G  M  D  M  S  Q  *  R  I  C  L  A  F  N  K  Y  V  H  M  F  Y  N  K  L  A  L  S  F  G  A  N  M  R  I  Y  Y  I  Q  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32726" stop="32452"/>
                    <exon start="31825" stop="31647"/>
                    <exon start="30984" stop="30831"/>
                    <exon start="30707" stop="30614"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASNGVGNGEFSFDNKRRTGLPKIQTQKTEDENVVCHDDSATPVKAQTLEELHSLQKKKSAPTTPIKSPHVFGVAVSEEERQKQQLQSISASLASLTRETGPKVVKGDPARQAETPKVQQPVHHHHTPALNISDSGLKFTHILYNLSPAELYEQAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVRDETTEDDLWWGKGSPNIEMDEQTFLINRERAVDYLCSLEKVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30377" stop="30156"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GERQIVILSFFDNLKACLIPHVNKIMYLYSRATIKKKIFLFVVVYEMATVAAITCMLHCLYVIIILSPIREIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="28637" e_stop="27912"/>
            <exon e_start="27830" e_stop="27662"/>
            <exon e_start="27575" e_stop="27153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.983"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.947"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="28637" e_stop="27912" e_length="726"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="27830" e_stop="27662" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="27575" e_stop="27153" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28637" stop="28100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28348" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27978" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611988" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27739" stop="27662"/>
              <exon start="27575" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27739" stop="27662"/>
              <exon start="27575" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG : TTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT : TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGATTAGCCAGAAAACATGTGTAATATTATTTTGTGTGTTACATTTTATGTGTTATTGGTCCGGAAGGAGGTTTCACATCCATGAATCTTTGTTCTTTATTCTTGTTTTTATTCCATTTGGGATCGTGTTTGTTTTCTGGTGAGGTTGAGGCGGAGGTTGTTATTGTAACTTTCATTCACTTGTGCTGTAATATTTTCAGTCAATAATGAA</gDNA_template>
            <first_frame> K  E  P  D  I  W  N  A  I  K  F  G  T  G  T  F  *  F  R  L  D  H  L  D  V  I  S  C  Q  V  T  G  *  S  Q  L  N  N  F  T  L  Y  A  V  L  E  N  V  V  F  E  E  H  T  R  E  V  D  Y  T  D  K  S  V  T  G  N  *  C  *  I  E  Q  R  F  S  S  Q  S  L  E  S  I  D  V  A  L  W  L  *  W  Y  G  L  I  A  E  N  T  R  A  A  Y  P  I  E  Y  I  P  N  A  K  I  P  C  V  G  P  H  P  K  N  V  I  L  L  A  C  D  A  F  G  V  L  P  P  V  S  K  L  N  L  A  Q  T  M  Y  H  F  I  S  G  Y  T  A  L  V  C  A  H  K  I  *  C  L  T  Y  Y  I  *  T  F  K  M  *  C  K  D  Y  C  F  K  H  F  T  G  G  R  N  R  R  W  Y  *  G  A  Y  S  N  I  F  S  M  F  R  C  S  I  Y  H  A  S  S  N  Q  I  C  S  H  A  G  *  E  D  A  E  T  W  S  Y  R  M  A  C  E  H  W  L  V  R  W  K  :  L  W  I  R  Q  P  N  Q  V  S  I  H  *  E  D  H  R  C  H  P  L  R  R  S  S  E  S  R  I  Q  E  D  R  G  I  W  A  G  D  S  N  C  T  *  G  S  T  F  R  D  S  G  P  R  E  H   : L  A  R  Q  E  G  T  Q  G  Y  P  V  E  A  G  R  P  I  *  E  E  F  *  G  V  H  K  L  Q  D  W  K  *  *  Q  P  D  *  G  D  P  G  S  W  S  K  L  L  I  E  E  G  F  A  *  V  M  V  W  Q  N  M  T  L  K  Y  Q  K  R  K  I  R  L  A  R  K  H  V  *  Y  Y  F  V  C  Y  I  L  C  V  I  G  P  E  G  G  F  T  S  M  N  L  C  S  L  F  L  F  L  F  H  L  G  S  C  L  F  S  G  E  V  E  A  E  V  V  I  V  T  F  I  H  L  C  C  N  I  F  S  Q  *  *  </first_frame>
            <second_frame>  R  S  L  I  S  G  M  P  S  S  L  A  L  V  L  S  D  S  D  L  I  I  L  M  L  F  P  A  K  L  Q  G  E  A  N  L  I  I  L  R  S  M  Q  C  W  K  T  W  F  L  K  N  I  P  E  K  W  I  I  Q  T  N  L  *  Q  V  T  S  V  E  S  N  R  D  F  H  L  K  V  L  N  Q  L  M  L  L  Y  G  Y  N  G  M  V  *  L  Q  R  T  P  G  Q  H  I  Q  L  N  T  S  Q  M  L  K  Y  H  A  L  V  L  I  Q  R  M  S  F  S  L  H  V  M  H  S  A  C  F  H  Q  S  A  N  *  T  W  H  R  Q  C  T  T  S  S  V  A  T  Q  L  W  Y  V  L  T  K  S  D  A  S  H  I  T  F  E  L  S  R  C  D  V  K  T  I  A  S  N  I  S  Q  V  A  G  T  E  D  G  I  K  E  P  T  A  T  F  S  A  C  F  G  A  A  F  I  M  L  H  P  T  K  Y  A  A  M  L  A  E  K  M  L  K  H  G  A  T  G  W  L  V  N  T  G  W  S  G  G  S :   Y  G  S  G  S  R  I  K  L  A  Y  T  R  K  I  I  D  A  I  H  S  G  D  L  L  K  A  E  Y  K  K  T  E  V  F  G  L  E  I  P  T  A  L  E  G  V  P  S  E  I  L  D  P  V  N  T  :  W  P  D  K  K  A  H  K  D  T  L  L  K  L  G  G  L  F  R  K  N  F  E  V  F  T  N  Y  K  I  G  S  D  S  N  L  T  E  E  I  L  A  A  G  P  N  F  *  L  K  K  D  L  P  E  *  W  F  G  K  I  *  L  *  N  I  K  R  E  K  *  D  *  P  E  N  M  C  N  I  I  L  C  V  T  F  Y  V  L  L  V  R  K  E  V  S  H  P  *  I  F  V  L  Y  S  C  F  Y  S  I  W  D  R  V  C  F  L  V  R  L  R  R  R  L  L  L  *  L  S  F  T  C  A  V  I  F  S  V  N  N  E </second_frame>
            <third_frame>   G  A  *  Y  L  E  C  H  Q  V  W  H  W  Y  F  L  I  P  T  *  S  S  *  C  Y  F  L  P  S  Y  R  V  K  P  T  *  *  F  Y  A  L  C  S  A  G  K  R  G  F  *  R  T  Y  P  R  S  G  L  Y  R  Q  I  C  N  R  *  L  V  L  N  R  T  E  I  F  I  S  K  S  *  I  N  *  C  C  S  M  A  I  M  V  W  F  D  C  R  E  H  P  G  S  I  S  N  *  I  H  P  K  C  *  N  T  M  R  W  S  S  S  K  E  C  H  S  P  C  M  *  C  I  R  R  A  S  T  S  Q  Q  I  E  L  G  T  D  N  V  P  L  H  Q  W  L  H  S  F  G  M  C  S  Q  N  L  M  P  H  I  L  H  L  N  F  Q  D  V  M  *  R  L  L  L  Q  T  F  H  R  W  Q  E  P  K  M  V  L  R  S  L  Q  Q  H  F  Q  H  V  S  V  Q  H  L  S  C  F  I  Q  P  N  M  Q  P  C  W  L  R  R  C  *  N  M  E  L  Q  D  G  L  *  T  L  A  G  Q  V  E   : V  M  D  Q  A  A  E  S  S  *  H  T  L  G  R  S  S  M  P  S  T  P  A  I  F  *  K  Q  N  T  R  R  P  R  Y  L  G  W  R  F  Q  L  H  L  R  E  Y  L  P  R  F  W  T  P  *  T  L :   G  P  T  R  R  H  T  R  I  P  C  *  S  W  E  A  Y  L  G  R  I  L  R  C  S  Q  T  T  R  L  E  V  I  A  T  *  L  R  R  S  W  Q  L  V  Q  T  S  N  *  R  R  I  C  L  S  D  G  L  A  K  Y  D  F  K  I  S  K  E  K  N  K  I  S  Q  K  T  C  V  I  L  F  C  V  L  H  F  M  C  Y  W  S  G  R  R  F  H  I  H  E  S  L  F  F  I  L  V  F  I  P  F  G  I  V  F  V  F  W  *  G  *  G  G  G  C  Y  C  N  F  H  S  L  V  L  *  Y  F  Q  S  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28216" stop="27912"/>
                    <exon start="27830" stop="27662"/>
                    <exon start="27575" stop="27432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWHRQCTTSSVATQLWYVLTKSDASHITFELSRCDVKTIASNISQVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMLKHGATGWLVNTGWSGGSYGSGSRIKLAYTRKIIDAIHSGDLLKAEYKKTEVFGLEIPTALEGVPSEILDPVNTWPDKKAHKDTLLKLGGLFRKNFEVFTNYKIGSDSNLTEEILAAGPNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27427" stop="27221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICLSDGLAKYDFKISKEKNKISQKTCVILFCVLHFMCYWSGRRFHIHESLFFILVFIPFGIVFVFW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="32932" e_stop="32866"/>
            <exon e_start="32727" e_stop="32452"/>
            <exon e_start="30984" e_stop="30831"/>
            <exon e_start="30707" e_stop="30623"/>
            <exon e_start="29524" e_stop="29424"/>
            <exon e_start="28771" e_stop="28705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="0.970"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="32932" e_stop="32866" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32727" e_stop="32452" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32451" i_stop="30985" i_length="1467"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="30984" e_stop="30831" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30707" e_stop="30623" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29524" e_stop="29424" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28771" e_stop="28705" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32932" stop="32866"/>
              <exon start="32727" stop="32508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32625" stop="32452"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="28771" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32579" stop="32452"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="28771" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32579" stop="32452"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="28771" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30936" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG : AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG : AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG : GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT : GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTG</gDNA_template>
            <first_frame> F  N  L  F  A  *  N  F  I  L  Q  I  Q  L  F  Q  L  F  F  T  D  S   : E  K  R  W  R  R  T  E  S  E  M  E  N  S  V  L  I  T  R  G  G  L  G  C  R  R  S  R  H  R  R  Q  R  M  K  T  W  F  A  M  T  T  V  Q  R  R  *  K  L  R  R  W  R  N  C  I  L  F  R  R  R  N  R  R  R  L  L  R  S  S  P  L  M  Y  S  A  L  P  F  L  K  R  N  D  R  N  N  S  C  N  P  L   : E  L  Y  E  Q  A  I  K  Y  E  K  G  S  F  I  T  S  S  G  A  L  A  T  L  S  G  A  K  T  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  :  V  F  V  N  D  Q  F  L  N  W  D  P  N  N  R  I  K  V  R  I  V  S  A  R  A  Y  H  S  L  F  M  H  N  M :   N  W  E  D  N  T  V  Y  *  S  Q  P  V  P  D  R  R  *  *  T  L  L </first_frame>
            <second_frame>  S  T  F  S  L  K  I  L  F  F  K  F  S  F  F  S  Y  S  S  L  I  L  :  R  K  D  G  V  E  R  S  R  K  W  R  I  Q  F  *  *  Q  E  E  D  W  A  A  E  D  P  D  T  E  D  R  G  *  K  R  G  L  P  *  R  Q  C  N  A  G  E  S  S  D  A  G  G  I  A  F  S  S  E  E  E  I  G  A  D  Y  S  D  Q  V  P  S  C  I  R  R  C  R  F  *  R  G  T  T  E  T  T  A  A  I  H  *  :  S  C  M  S  K  L  S  S  M  R  R  D  H  S  S  R  R  A  V  L  *  P  H  F  P  E  P  K  L  A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : R  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R :   C  L  *  M  I  S  S  S  T  G  I  Q  T  I  V  S  K  L  E  L  Y  L  P  E  P  I  T  P  C  S  C  T  T   : *  T  G  K  T  T  L  S  T  D  H  N  R  Y  L  I  G  D  D  E  H  C   </second_frame>
            <third_frame>   Q  P  F  R  L  K  F  Y  S  S  N  S  A  F  S  A  I  L  H  *  F  * :   E  K  M  A  S  N  G  V  G  N  G  E  F  S  F  D  N  K  R  R  T  G  L  P  K  I  Q  T  Q  K  T  E  D  E  N  V  V  C  H  D  D  S  A  T  P  V  K  A  Q  T  L  E  E  L  H  S  L  Q  K  K  K  S  A  P  T  T  P  I  K  S  P  H  V  F  G  V  A  V  S  E  E  E  R  Q  K  Q  Q  L  Q  S  I  R :   V  V  *  A  S  Y  Q  V  *  E  G  I  I  H  H  V  E  R  C  F  S  H  T  F  R  S  Q  N  W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E   : G  V  C  E  *  S  V  P  Q  L  G  S  K  Q  S  Y  Q  S  *  N  C  I  C  Q  S  L  S  L  L  V  H  A  Q  H  :  E  L  G  R  Q  H  C  L  L  I  T  T  G  T  *  S  E  M  M  N  T  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32587" stop="32452"/>
                    <exon start="30984" stop="30831"/>
                    <exon start="30707" stop="30623"/>
                    <exon start="29524" stop="29424"/>
                    <exon start="28771" stop="28744"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRRWRNCILFRRRNRRRLLRSSPLMYSALPFLKRNDRNNSCNPLELYEQAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVRDETTEDDLWWGKGSPNIEMDEQTFLINRERAVDYLCSLEKVFVNDQFLNWDPNNRIKVRIVSARAYHSLFMHNMNWEDNTVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27294" PGL_stop="27754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27294" e_stop="27577"/>
            <exon e_start="27664" e_stop="27754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.683" acc_prob="0.936" e_score="0.982"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="27294" e_stop="27577" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.683" acc_prob="0.936">
            <gDNA_intron_boundary i_start="27578" i_stop="27663" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="27664" e_stop="27754" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27294" stop="27577"/>
              <exon start="27664" stop="27754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTTCCGGACCAATAACACATAAAATGTAACACACAAAATAATATTACACATGTTTTCTGGCTAATCTTATTTTTCTCTTTTGATATTTTAAAGTCATATTTTGCCAAACCATCACTCAGGCAAATCCTTCTTCAATTAGAAGTTTGGACCAGCTGCCAGGATCTCCTCAGTCAGGTTGCTATCACTTCCAATCTTGTAGTTTGTGAACACCTCAAAATTCTTCCTAAATAGGCCTCCCAGCTTCAACAGGGTATCCTTGTGTGCCTTCTTGTCGGGCCACT : TGTTCACGGGGTCCAGAATCTCGGAAGGTACTCCCTCAAGTGCAGTTGGAATCTCCAGCCCAAATACCTCGGTCTTCTTGTATTCTGCTTT</gDNA_template>
            <first_frame> L  L  P  D  Q  *  H  I  K  C  N  T  Q  N  N  I  T  H  V  F  W  L  I  L  F  F  S  F  D  I  L  K  S  Y  F  A  K  P  S  L  R  Q  I  L  L  Q  L  E  V  W  T  S  C  Q  D  L  L  S  Q  V  A  I  T  S  N  L  V  V  C  E  H  L  K  I  L  P  K  *  A  S  Q  L  Q  Q  G  I  L  V  C  L  L  V  G  P  L :   V  H  G  V  Q  N  L  G  R  Y  S  L  K  C  S  W  N  L  Q  P  K  Y  L  G  L  L  V  F  C  F </first_frame>
            <second_frame>  S  F  R  T  N  N  T  *  N  V  T  H  K  I  I  L  H  M  F  S  G  *  S  Y  F  S  L  L  I  F  *  S  H  I  L  P  N  H  H  S  G  K  S  F  F  N  *  K  F  G  P  A  A  R  I  S  S  V  R  L  L  S  L  P  I  L  *  F  V  N  T  S  K  F  F  L  N  R  P  P  S  F  N  R  V  S  L  C  A  F  L  S  G  H   : L  F  T  G  S  R  I  S  E  G  T  P  S  S  A  V  G  I  S  S  P  N  T  S  V  F  L  Y  S  A   </second_frame>
            <third_frame>   P  S  G  P  I  T  H  K  M  *  H  T  K  *  Y  Y  T  C  F  L  A  N  L  I  F  L  F  *  Y  F  K  V  I  F  C  Q  T  I  T  Q  A  N  P  S  S  I  R  S  L  D  Q  L  P  G  S  P  Q  S  G  C  Y  H  F  Q  S  C  S  L  *  T  P  Q  N  S  S  *  I  G  L  P  A  S  T  G  Y  P  C  V  P  S  C  R  A  T  :  C  S  R  G  P  E  S  R  K  V  L  P  Q  V  Q  L  E  S  P  A  Q  I  P  R  S  S  C  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27312" stop="27527"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIKCNTQNNITHVFWLILFFSFDILKSYFAKPSLRQILLQLEVWTSCQDLLSQVAITSNLVVCEHLKILPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 67 chains have been computed
$ 
$ memory statistics:
$ 129088 bytes spliced alignments in total
$ 60 spliced alignments have been stored
$ 2151 bytes was the average size of a spliced alignment
$ 14184 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2364 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 70 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 22:57:52
-->
